2023-04-20T08:59:11,574 Created temporary directory: /tmp/pip-ephem-wheel-cache-rb_mxqyo
2023-04-20T08:59:11,577 Created temporary directory: /tmp/pip-build-tracker-1veqai5q
2023-04-20T08:59:11,577 Initialized build tracking at /tmp/pip-build-tracker-1veqai5q
2023-04-20T08:59:11,577 Created build tracker: /tmp/pip-build-tracker-1veqai5q
2023-04-20T08:59:11,577 Entered build tracker: /tmp/pip-build-tracker-1veqai5q
2023-04-20T08:59:11,578 Created temporary directory: /tmp/pip-wheel-th406z_7
2023-04-20T08:59:11,583 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-04-20T08:59:11,586 Created temporary directory: /tmp/pip-ephem-wheel-cache-o299if8z
2023-04-20T08:59:11,610 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-04-20T08:59:11,613 2 location(s) to search for versions of scipion-em-emantomo:
2023-04-20T08:59:11,613 * https://pypi.org/simple/scipion-em-emantomo/
2023-04-20T08:59:11,613 * https://www.piwheels.org/simple/scipion-em-emantomo/
2023-04-20T08:59:11,614 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-emantomo/
2023-04-20T08:59:11,614 Getting page https://pypi.org/simple/scipion-em-emantomo/
2023-04-20T08:59:11,616 Found index url https://pypi.org/simple
2023-04-20T08:59:11,667 Fetched page https://pypi.org/simple/scipion-em-emantomo/ as application/vnd.pypi.simple.v1+json
2023-04-20T08:59:11,671   Found link https://files.pythonhosted.org/packages/ab/61/17d1217b3c3da144b7095ba596723929fdc18f16d35e3ae38f3db2f1679a/scipion-em-emantomo-3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.0.0
2023-04-20T08:59:11,672   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/e7/e7/43c0a6e62b0e1f08b20742ad33438df4978fc1f0da7044c1c76be1cf1cec/scipion_em_emantomo-3.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,672   Found link https://files.pythonhosted.org/packages/d9/41/ccdabf257f81d487988937d61333c025e187330c7cffe9559975ea025ca8/scipion-em-emantomo-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.0.1
2023-04-20T08:59:11,672   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/c5/00/efb9b1fc606ade87d30787120839506102b6330709c407f447e22abd0aae/scipion_em_emantomo-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,672   Found link https://files.pythonhosted.org/packages/d4/2e/297e86f8d3b89b16748bafb2af10a28982379aef4f130c4c3d2a6ead5456/scipion-em-emantomo-3.0.2.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.0.2
2023-04-20T08:59:11,673   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/7e/76/f8894d2194f874a45e951ff87c90b6aa571d27eb0295690253c80da44d04/scipion_em_emantomo-3.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,673   Found link https://files.pythonhosted.org/packages/86/fb/3a152dc88faa08186c288176c5d4af84f4f9afcadfe220aa40e3e749a88a/scipion-em-emantomo-3.0.3.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.0.3
2023-04-20T08:59:11,673   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/58/71/ba6f691fe0bacce41f79cd0b74ccdca28adcd2f3af5067e31dd6aecb72af/scipion_em_emantomo-3.0.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,673   Found link https://files.pythonhosted.org/packages/59/f7/ade6f7d9704a9f7cf52fccc637b3bc615652ce26194cbb59a363b7791b5e/scipion-em-emantomo-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.1.0
2023-04-20T08:59:11,674   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/b2/50/9c74d8a4333bbbaa4fb263eeb29b74c2edf130fe9b5bd77441412f9b2ebe/scipion_em_emantomo-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,674   Found link https://files.pythonhosted.org/packages/83/c1/027601a6e58a652b260fda67bc777c8a72e080d116e0160968d62405e7d2/scipion-em-emantomo-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.1.1
2023-04-20T08:59:11,674   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/5b/85/4a6116c449dcc15e58bb754c682b8a39639168f069aed35cd47f32167253/scipion_em_emantomo-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,674   Found link https://files.pythonhosted.org/packages/f9/a9/7d6f9caaec22e57f9c6f7894be8df1798a8328157087385f20fc22dd116a/scipion-em-emantomo-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.1.2
2023-04-20T08:59:11,675   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/07/e7/2f53ff0767ac85a1daccdb6db6a718af936e7d3c792eaf1c5d5d391227a3/scipion_em_emantomo-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,675   Found link https://files.pythonhosted.org/packages/44/32/d6c97314a1e8d6edf4f4a2cf1f4cb265f434080ec769f47c968e2ed20645/scipion-em-emantomo-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.1.3
2023-04-20T08:59:11,675   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/b6/e7/fe57c7d1d384f27169d137a6ea037a40040634c8bb0955fa5626ee0d2ede/scipion_em_emantomo-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,676 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-emantomo/
2023-04-20T08:59:11,676 Getting page https://www.piwheels.org/simple/scipion-em-emantomo/
2023-04-20T08:59:11,677 Found index url https://www.piwheels.org/simple
2023-04-20T08:59:11,832 Fetched page https://www.piwheels.org/simple/scipion-em-emantomo/ as text/html
2023-04-20T08:59:11,834   Skipping link: No binaries permitted for scipion-em-emantomo: https://www.piwheels.org/simple/scipion-em-emantomo/scipion_em_emantomo-3.0.2-py3-none-any.whl#sha256=02db47c238c36ed754a8dd869799e971fd50c9d7c541196f2ac8d338dc1eb9e7 (from https://www.piwheels.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,834   Skipping link: No binaries permitted for scipion-em-emantomo: https://www.piwheels.org/simple/scipion-em-emantomo/scipion_em_emantomo-3.0.1-py3-none-any.whl#sha256=e88fad1a12505a9a4abeda80fa62868c2a3d3640a68d8418c669c8a73d71f267 (from https://www.piwheels.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,834   Skipping link: No binaries permitted for scipion-em-emantomo: https://www.piwheels.org/simple/scipion-em-emantomo/scipion_em_emantomo-3.0.0-py3-none-any.whl#sha256=7e2853fb8c94d551df962a36fb759380f5838347cc5810e2ca4eb856027387c4 (from https://www.piwheels.org/simple/scipion-em-emantomo/)
2023-04-20T08:59:11,835 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-emantomo/
2023-04-20T08:59:11,835 Skipping link: not a file: https://pypi.org/simple/scipion-em-emantomo/
2023-04-20T08:59:11,854 Given no hashes to check 1 links for project 'scipion-em-emantomo': discarding no candidates
2023-04-20T08:59:11,871 Collecting scipion-em-emantomo==3.1.3
2023-04-20T08:59:11,873   Created temporary directory: /tmp/pip-unpack-nyneg0ko
2023-04-20T08:59:11,916   Downloading scipion-em-emantomo-3.1.3.tar.gz (131 kB)
2023-04-20T08:59:12,080   Added scipion-em-emantomo==3.1.3 from https://files.pythonhosted.org/packages/44/32/d6c97314a1e8d6edf4f4a2cf1f4cb265f434080ec769f47c968e2ed20645/scipion-em-emantomo-3.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-1veqai5q'
2023-04-20T08:59:12,081   Running setup.py (path:/tmp/pip-wheel-th406z_7/scipion-em-emantomo_d94c3662c262498ca33b792d993bceeb/setup.py) egg_info for package scipion-em-emantomo
2023-04-20T08:59:12,082   Created temporary directory: /tmp/pip-pip-egg-info-jr1r5t_c
2023-04-20T08:59:12,082   Preparing metadata (setup.py): started
2023-04-20T08:59:12,083   Running command python setup.py egg_info
2023-04-20T08:59:12,584   Traceback (most recent call last):
2023-04-20T08:59:12,584     File "<string>", line 2, in <module>
2023-04-20T08:59:12,585     File "<pip-setuptools-caller>", line 34, in <module>
2023-04-20T08:59:12,585     File "/tmp/pip-wheel-th406z_7/scipion-em-emantomo_d94c3662c262498ca33b792d993bceeb/setup.py", line 39, in <module>
2023-04-20T08:59:12,585       from emantomo import __version__
2023-04-20T08:59:12,585     File "/tmp/pip-wheel-th406z_7/scipion-em-emantomo_d94c3662c262498ca33b792d993bceeb/emantomo/__init__.py", line 31, in <module>
2023-04-20T08:59:12,585       import pwem
2023-04-20T08:59:12,586   ModuleNotFoundError: No module named 'pwem'
2023-04-20T08:59:12,632   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-04-20T08:59:12,650   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-04-20T08:59:12,650   exec(compile('"'"''"'"''"'"'
2023-04-20T08:59:12,650   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-04-20T08:59:12,650   #
2023-04-20T08:59:12,650   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-04-20T08:59:12,650   #   import from `distutils.core` to work with newer packaging standards.
2023-04-20T08:59:12,650   # - It provides a clear error message when setuptools is not installed.
2023-04-20T08:59:12,650   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-04-20T08:59:12,650   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-04-20T08:59:12,650   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-04-20T08:59:12,650   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-04-20T08:59:12,650   import os, sys, tokenize
2023-04-20T08:59:12,650   
2023-04-20T08:59:12,650   try:
2023-04-20T08:59:12,650       import setuptools
2023-04-20T08:59:12,650   except ImportError as error:
2023-04-20T08:59:12,650       print(
2023-04-20T08:59:12,650           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-04-20T08:59:12,650           "the build environment.",
2023-04-20T08:59:12,650           file=sys.stderr,
2023-04-20T08:59:12,650       )
2023-04-20T08:59:12,650       sys.exit(1)
2023-04-20T08:59:12,650   
2023-04-20T08:59:12,650   __file__ = %r
2023-04-20T08:59:12,650   sys.argv[0] = __file__
2023-04-20T08:59:12,650   
2023-04-20T08:59:12,650   if os.path.exists(__file__):
2023-04-20T08:59:12,650       filename = __file__
2023-04-20T08:59:12,650       with tokenize.open(__file__) as f:
2023-04-20T08:59:12,650           setup_py_code = f.read()
2023-04-20T08:59:12,650   else:
2023-04-20T08:59:12,650       filename = "<auto-generated setuptools caller>"
2023-04-20T08:59:12,650       setup_py_code = "from setuptools import setup; setup()"
2023-04-20T08:59:12,650   
2023-04-20T08:59:12,650   exec(compile(setup_py_code, filename, "exec"))
2023-04-20T08:59:12,650   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-th406z_7/scipion-em-emantomo_d94c3662c262498ca33b792d993bceeb/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-jr1r5t_c[/]
2023-04-20T08:59:12,650   [bold magenta]cwd[/]: /tmp/pip-wheel-th406z_7/scipion-em-emantomo_d94c3662c262498ca33b792d993bceeb/
2023-04-20T08:59:12,650   Preparing metadata (setup.py): finished with status 'error'
2023-04-20T08:59:12,652 ERROR: [present-rich] metadata generation failed
2023-04-20T08:59:12,657 Exception information:
2023-04-20T08:59:12,657 Traceback (most recent call last):
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-04-20T08:59:12,657     call_subprocess(
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-04-20T08:59:12,657     raise error
2023-04-20T08:59:12,657 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-04-20T08:59:12,657 
2023-04-20T08:59:12,657 The above exception was the direct cause of the following exception:
2023-04-20T08:59:12,657 
2023-04-20T08:59:12,657 Traceback (most recent call last):
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2023-04-20T08:59:12,657     status = run_func(*args)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2023-04-20T08:59:12,657     return func(self, options, args)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 170, in run
2023-04-20T08:59:12,657     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-04-20T08:59:12,657     result = self._result = resolver.resolve(
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve
2023-04-20T08:59:12,657     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve
2023-04-20T08:59:12,657     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria
2023-04-20T08:59:12,657     if not criterion.candidates:
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__
2023-04-20T08:59:12,657     return bool(self._sequence)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-04-20T08:59:12,657     return any(self)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-04-20T08:59:12,657     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-04-20T08:59:12,657     candidate = func()
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-04-20T08:59:12,657     self._link_candidate_cache[link] = LinkCandidate(
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__
2023-04-20T08:59:12,657     super().__init__(
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__
2023-04-20T08:59:12,657     self.dist = self._prepare()
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare
2023-04-20T08:59:12,657     dist = self._prepare_distribution()
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution
2023-04-20T08:59:12,657     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement
2023-04-20T08:59:12,657     return self._prepare_linked_requirement(req, parallel_builds)
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement
2023-04-20T08:59:12,657     dist = _get_prepared_distribution(
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-04-20T08:59:12,657     abstract_dist.prepare_distribution_metadata(
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-04-20T08:59:12,657     self.req.prepare_metadata()
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 545, in prepare_metadata
2023-04-20T08:59:12,657     self.metadata_directory = generate_metadata_legacy(
2023-04-20T08:59:12,657   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-04-20T08:59:12,657     raise MetadataGenerationFailed(package_details=details) from error
2023-04-20T08:59:12,657 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-04-20T08:59:12,668 Removed scipion-em-emantomo==3.1.3 from https://files.pythonhosted.org/packages/44/32/d6c97314a1e8d6edf4f4a2cf1f4cb265f434080ec769f47c968e2ed20645/scipion-em-emantomo-3.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-1veqai5q'
2023-04-20T08:59:12,669 Removed build tracker: '/tmp/pip-build-tracker-1veqai5q'