2023-05-12T12:22:17,321 Created temporary directory: /tmp/pip-build-tracker-x1_8t5oe
2023-05-12T12:22:17,324 Initialized build tracking at /tmp/pip-build-tracker-x1_8t5oe
2023-05-12T12:22:17,324 Created build tracker: /tmp/pip-build-tracker-x1_8t5oe
2023-05-12T12:22:17,325 Entered build tracker: /tmp/pip-build-tracker-x1_8t5oe
2023-05-12T12:22:17,326 Created temporary directory: /tmp/pip-wheel-t6linmrk
2023-05-12T12:22:17,335 Created temporary directory: /tmp/pip-ephem-wheel-cache-3mypbxw6
2023-05-12T12:22:17,387 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-12T12:22:17,395 2 location(s) to search for versions of dendropy:
2023-05-12T12:22:17,395 * https://pypi.org/simple/dendropy/
2023-05-12T12:22:17,395 * https://www.piwheels.org/simple/dendropy/
2023-05-12T12:22:17,396 Fetching project page and analyzing links: https://pypi.org/simple/dendropy/
2023-05-12T12:22:17,397 Getting page https://pypi.org/simple/dendropy/
2023-05-12T12:22:17,401 Found index url https://pypi.org/simple/
2023-05-12T12:22:17,586 Fetched page https://pypi.org/simple/dendropy/ as application/vnd.pypi.simple.v1+json
2023-05-12T12:22:17,599   Found link https://files.pythonhosted.org/packages/03/48/8379b3e170d60052da7ccf3387549af17d46808a39062fbb234df3038fa0/DendroPy-3.7.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.0
2023-05-12T12:22:17,600   Found link https://files.pythonhosted.org/packages/17/0a/914df0e24dc378acdd9cb1705c1fcfcf15dd1da8992de567a4cce85bc31e/DendroPy-3.7.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.1
2023-05-12T12:22:17,601   Found link https://files.pythonhosted.org/packages/a2/f5/5c4fb1cde35799eeacb35ac289c271371a0c0fd3197548fab7e184900cc7/DendroPy-3.8.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.0
2023-05-12T12:22:17,601   Found link https://files.pythonhosted.org/packages/95/73/7b1084d03e025b27c79342d6935810969edb86677ef3e5eb1f9e5aec1e6f/DendroPy-3.8.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.1
2023-05-12T12:22:17,602   Found link https://files.pythonhosted.org/packages/18/2e/141c0d6a99905b9be3256aae6a87504f14853b20e40a6d89c7c4c465769d/DendroPy-3.9.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.9.0
2023-05-12T12:22:17,603   Found link https://files.pythonhosted.org/packages/7e/08/a968b51274c8476084521f97af4e8fadd09a6b42a727141f502cc33767c5/DendroPy-3.10.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.0
2023-05-12T12:22:17,604   Found link https://files.pythonhosted.org/packages/3a/26/552efe612d37cff025f1dd1350eb643edd6dda1cb628d7cbe572e343a049/DendroPy-3.10.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.1
2023-05-12T12:22:17,604   Found link https://files.pythonhosted.org/packages/0f/3e/5549b668d04241c77c8f5b26f0c94a87ad93b6b9089fc6bcd510eba5d5f4/DendroPy-3.11.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.11.0
2023-05-12T12:22:17,605   Found link https://files.pythonhosted.org/packages/43/22/69b7713b094697f8a432abe96c44a155519ef67b3c31221de32f4c3d5fa5/DendroPy-3.12.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.0
2023-05-12T12:22:17,606   Found link https://files.pythonhosted.org/packages/5f/ae/14c92b087632944149cca61ec8daf41eee0083d0fad30c9248edb7e227d2/DendroPy-3.12.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.2
2023-05-12T12:22:17,606   Found link https://files.pythonhosted.org/packages/3d/c0/e0a20d1cf4b268757842a03f36452095fccb8eae5ebd541548e29c6ca1e3/DendroPy-3.12.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.3
2023-05-12T12:22:17,607   Found link https://files.pythonhosted.org/packages/f0/d3/e0180bf1a8d599b8f847ab7a1b19fe4d7a95b3613c57b57108e2a48bb59f/DendroPy-4.0.0.rc1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0.rc1
2023-05-12T12:22:17,608   Found link https://files.pythonhosted.org/packages/55/dd/0d59b7bde4b230fadb999bc84cc45668a53733cb63e4aacf7e6ab4a9e175/DendroPy-4.0.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0
2023-05-12T12:22:17,608   Found link https://files.pythonhosted.org/packages/52/ba/02652626ed0d56afadc990e6540d998217831d856170ff0c68c3afbef866/DendroPy-4.0.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.1
2023-05-12T12:22:17,609   Found link https://files.pythonhosted.org/packages/62/10/117c87b76f5f84d4559bd7ad25af04f11369ef8267f3c8e7d62769efc85d/DendroPy-4.0.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.2
2023-05-12T12:22:17,610   Found link https://files.pythonhosted.org/packages/66/0b/72ca62a6e87ddb9b70cac2cf1fc199ca00127fc168c52bcbcbf30cfb5947/DendroPy-4.0.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.3
2023-05-12T12:22:17,610   Found link https://files.pythonhosted.org/packages/65/3a/19556a58c560de488dffbf3c7fe7c9ed34c1a6223f0dfe971224a42aaf39/DendroPy-4.1.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.1.0
2023-05-12T12:22:17,611   Found link https://files.pythonhosted.org/packages/e6/5a/d48c8d3f8100efd5eb6e6142f28bf1c13200e08882e59596369035ebc138/DendroPy-4.2.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.2.0
2023-05-12T12:22:17,612   Found link https://files.pythonhosted.org/packages/58/14/d4559893d72675b322c1d60229ef3490bc5c2f5b28c5cc339956aaf8f507/DendroPy-4.3.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.3.0
2023-05-12T12:22:17,612   Found link https://files.pythonhosted.org/packages/f5/21/17e4fbb1c2a68421eec43930b1e118660c7483229f1b28ba4402e8856884/DendroPy-4.4.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.4.0
2023-05-12T12:22:17,613   Found link https://files.pythonhosted.org/packages/e0/f3/222e939e250e71234031d182e58704fff1c3296140f91f70d7ef8b3e17a6/DendroPy-4.5.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.1
2023-05-12T12:22:17,614   Found link https://files.pythonhosted.org/packages/f9/10/125c181b1d97ffc4661a60ec897cfe058dc46cb53900d807819464c3510f/DendroPy-4.5.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.2
2023-05-12T12:22:17,614   Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/b0/c0/841e46da39a4dae07a5cd4e7a1c9472acbdd623f820b125b5995dd342c9a/DendroPy-4.6.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/)
2023-05-12T12:22:17,615   Found link https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.0
2023-05-12T12:22:17,616 Fetching project page and analyzing links: https://www.piwheels.org/simple/dendropy/
2023-05-12T12:22:17,617 Getting page https://www.piwheels.org/simple/dendropy/
2023-05-12T12:22:17,619 Found index url https://www.piwheels.org/simple/
2023-05-12T12:22:17,883 Fetched page https://www.piwheels.org/simple/dendropy/ as text/html
2023-05-12T12:22:17,894   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.0-py3-none-any.whl#sha256=bda03c9aad06b96e4d28081b172809f7f0755aa99e3ed7275407576889751e33 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,895   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.2-py3-none-any.whl#sha256=7492efc1d60e0d280a9effe9093dd14da694300275c2dbc2c3cd116390521bc3 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,895   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.1-py3-none-any.whl#sha256=0113d22b31642c3c63327d0eab46f2aff2079181bb537c2007796802874bed73 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,896   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.4.0-py3-none-any.whl#sha256=04bb1c1125a9435d6f61e956aaa59a6789d16640f9371e367f6182331570eeb9 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,896   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.3.0-py3-none-any.whl#sha256=b762edba2a883b8a9549d498742e7ffe9126f33855d270fc0fa42c0ffd77e224 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,897   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.2.0-py3-none-any.whl#sha256=b708e09e2b790f482496fd2e17b5159e212994a6d7d234771e2c9e5e208aa55e (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,897   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.1.0-py3-none-any.whl#sha256=1b13aa093d01409bfb95728a68dbff117529dc40cd5ac6fa4d4fc30756ef5357 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,898   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.3-py3-none-any.whl#sha256=eea9ba2017437bada349db5b12b6d9c8c6dfcbfea1832bac2a862b3c5503ceb3 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,898   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.2-py3-none-any.whl#sha256=81648919d17fb5fdc36f4053aff572b4a2d358a189d2462e15aab8760eb71d1a (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,899   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.1-py3-none-any.whl#sha256=4ba8a912afd561e3116cdfbcd6c168cafc69eec3339bfdb79858e93000402410 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,899   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0-py3-none-any.whl#sha256=4687108db4e411473e5ccce4ec9a99fc10ad22b8da4c6e817154202a3e6cc0e9 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,900   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0rc1-py3-none-any.whl#sha256=0310d7072108356c0655941033b16778503a2c6ec2d84ac1eeb88a41eb92a543 (from https://www.piwheels.org/simple/dendropy/)
2023-05-12T12:22:17,900 Skipping link: not a file: https://www.piwheels.org/simple/dendropy/
2023-05-12T12:22:17,901 Skipping link: not a file: https://pypi.org/simple/dendropy/
2023-05-12T12:22:17,938 Given no hashes to check 1 links for project 'dendropy': discarding no candidates
2023-05-12T12:22:17,967 Collecting dendropy==4.6.0
2023-05-12T12:22:17,972   Created temporary directory: /tmp/pip-unpack-_apmcmh3
2023-05-12T12:22:18,161   Downloading DendroPy-4.6.0.tar.gz (15.2 MB)
2023-05-12T12:22:32,872   Added dendropy==4.6.0 from https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-x1_8t5oe'
2023-05-12T12:22:32,877   Running setup.py (path:/tmp/pip-wheel-t6linmrk/dendropy_790dd111d6304bc1a4f3b7419c0346c1/setup.py) egg_info for package dendropy
2023-05-12T12:22:32,878   Created temporary directory: /tmp/pip-pip-egg-info-6nszfwe2
2023-05-12T12:22:32,879   Preparing metadata (setup.py): started
2023-05-12T12:22:32,881   Running command python setup.py egg_info
2023-05-12T12:22:34,393   running egg_info
2023-05-12T12:22:34,397   creating /tmp/pip-pip-egg-info-6nszfwe2/DendroPy.egg-info
2023-05-12T12:22:34,451   writing /tmp/pip-pip-egg-info-6nszfwe2/DendroPy.egg-info/PKG-INFO
2023-05-12T12:22:34,457   writing dependency_links to /tmp/pip-pip-egg-info-6nszfwe2/DendroPy.egg-info/dependency_links.txt
2023-05-12T12:22:34,461   writing requirements to /tmp/pip-pip-egg-info-6nszfwe2/DendroPy.egg-info/requires.txt
2023-05-12T12:22:34,464   writing top-level names to /tmp/pip-pip-egg-info-6nszfwe2/DendroPy.egg-info/top_level.txt
2023-05-12T12:22:34,466   writing manifest file '/tmp/pip-pip-egg-info-6nszfwe2/DendroPy.egg-info/SOURCES.txt'
2023-05-12T12:22:34,737   reading manifest file '/tmp/pip-pip-egg-info-6nszfwe2/DendroPy.egg-info/SOURCES.txt'
2023-05-12T12:22:34,741   reading manifest template 'MANIFEST.in'
2023-05-12T12:22:34,743   -setup.py: DendroPy version 4.6.0
2023-05-12T12:22:34,744   -setup.py: using setuptools ('/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py')
2023-05-12T12:22:34,744   -setup.py: searching for packages
2023-05-12T12:22:34,745   -setup.py: packages identified:
2023-05-12T12:22:34,745              - dendropy
2023-05-12T12:22:34,746              - dendropy.datamodel
2023-05-12T12:22:34,746              - dendropy.legacy
2023-05-12T12:22:34,746              - dendropy.dataio
2023-05-12T12:22:34,747              - dendropy.model
2023-05-12T12:22:34,747              - dendropy.simulate
2023-05-12T12:22:34,748              - dendropy.utility
2023-05-12T12:22:34,748              - dendropy.calculate
2023-05-12T12:22:34,748              - dendropy.interop
2023-05-12T12:22:34,749              - dendropy.mathlib
2023-05-12T12:22:34,749              - dendropy.datamodel.treemodel
2023-05-12T12:22:34,750              - dendropy.utility.libexec
2023-05-12T12:22:34,750   -setup.py: scripts identified:
2023-05-12T12:22:34,751              - applications/sumtrees/sumtrees.py
2023-05-12T12:22:34,751              - applications/sumlabels/sumlabels.py
2023-05-12T12:22:34,752              - applications/dendropy-format/dendropy-format
2023-05-12T12:22:34,752   -setup.py: setuptools command extensions are available
2023-05-12T12:22:34,752   warning: no files found matching 'doc/Makefile'
2023-05-12T12:22:34,753   warning: no files found matching '*' under directory 'doc/source'
2023-05-12T12:22:35,194   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2023-05-12T12:22:35,199   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2023-05-12T12:22:35,203   warning: no previously-included files matching '.gitignore' found anywhere in distribution
2023-05-12T12:22:35,208   warning: no previously-included files matching '.gitattributes' found anywhere in distribution
2023-05-12T12:22:35,212   warning: no previously-included files matching '.idea' found anywhere in distribution
2023-05-12T12:22:35,216   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2023-05-12T12:22:35,217   adding license file 'LICENSE.rst'
2023-05-12T12:22:35,217   adding license file 'AUTHORS.rst'
2023-05-12T12:22:35,284   writing manifest file '/tmp/pip-pip-egg-info-6nszfwe2/DendroPy.egg-info/SOURCES.txt'
2023-05-12T12:22:35,411   Preparing metadata (setup.py): finished with status 'done'
2023-05-12T12:22:35,424   Source in /tmp/pip-wheel-t6linmrk/dendropy_790dd111d6304bc1a4f3b7419c0346c1 has version 4.6.0, which satisfies requirement dendropy==4.6.0 from https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz
2023-05-12T12:22:35,426   Removed dendropy==4.6.0 from https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-x1_8t5oe'
2023-05-12T12:22:35,438 Created temporary directory: /tmp/pip-unpack-knvk8n7a
2023-05-12T12:22:35,439 Building wheels for collected packages: dendropy
2023-05-12T12:22:35,448   Created temporary directory: /tmp/pip-wheel-hwdvfjcu
2023-05-12T12:22:35,449   Building wheel for dendropy (setup.py): started
2023-05-12T12:22:35,451   Destination directory: /tmp/pip-wheel-hwdvfjcu
2023-05-12T12:22:35,451   Running command python setup.py bdist_wheel
2023-05-12T12:22:36,549   -setup.py: DendroPy version 4.6.0
2023-05-12T12:22:36,550   -setup.py: using setuptools ('/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py')
2023-05-12T12:22:36,550   -setup.py: searching for packages
2023-05-12T12:22:36,562   -setup.py: packages identified:
2023-05-12T12:22:36,563              - dendropy
2023-05-12T12:22:36,563              - dendropy.datamodel
2023-05-12T12:22:36,563              - dendropy.legacy
2023-05-12T12:22:36,564              - dendropy.dataio
2023-05-12T12:22:36,564              - dendropy.model
2023-05-12T12:22:36,565              - dendropy.simulate
2023-05-12T12:22:36,565              - dendropy.utility
2023-05-12T12:22:36,565              - dendropy.calculate
2023-05-12T12:22:36,566              - dendropy.interop
2023-05-12T12:22:36,566              - dendropy.mathlib
2023-05-12T12:22:36,566              - dendropy.datamodel.treemodel
2023-05-12T12:22:36,567              - dendropy.utility.libexec
2023-05-12T12:22:36,567   -setup.py: scripts identified:
2023-05-12T12:22:36,568              - applications/sumtrees/sumtrees.py
2023-05-12T12:22:36,568              - applications/sumlabels/sumlabels.py
2023-05-12T12:22:36,568              - applications/dendropy-format/dendropy-format
2023-05-12T12:22:36,569   -setup.py: setuptools command extensions are available
2023-05-12T12:22:37,356   running bdist_wheel
2023-05-12T12:22:37,526   running build
2023-05-12T12:22:37,527   running build_py
2023-05-12T12:22:37,589   creating build
2023-05-12T12:22:37,590   creating build/lib
2023-05-12T12:22:37,592   creating build/lib/dendropy
2023-05-12T12:22:37,594   copying src/dendropy/__init__.py -> build/lib/dendropy
2023-05-12T12:22:37,598   copying src/dendropy/__main__.py -> build/lib/dendropy
2023-05-12T12:22:37,604   creating build/lib/dendropy/datamodel
2023-05-12T12:22:37,605   copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel
2023-05-12T12:22:37,611   copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel
2023-05-12T12:22:37,618   copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel
2023-05-12T12:22:37,626   copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel
2023-05-12T12:22:37,632   copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel
2023-05-12T12:22:37,643   copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel
2023-05-12T12:22:37,646   copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel
2023-05-12T12:22:37,657   creating build/lib/dendropy/legacy
2023-05-12T12:22:37,659   copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,663   copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,667   copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,670   copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,674   copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,678   copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,682   copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,686   copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,689   copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,692   copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,696   copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,699   copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,703   copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,707   copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy
2023-05-12T12:22:37,715   creating build/lib/dendropy/dataio
2023-05-12T12:22:37,716   copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,720   copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,725   copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,729   copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,733   copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,736   copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,741   copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,746   copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,751   copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,756   copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,762   copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,766   copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,771   copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,775   copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,780   copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,784   copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,787   copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,794   copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,799   copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,803   copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio
2023-05-12T12:22:37,810   creating build/lib/dendropy/model
2023-05-12T12:22:37,812   copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model
2023-05-12T12:22:37,816   copying src/dendropy/model/discrete.py -> build/lib/dendropy/model
2023-05-12T12:22:37,821   copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model
2023-05-12T12:22:37,833   copying src/dendropy/model/__init__.py -> build/lib/dendropy/model
2023-05-12T12:22:37,836   copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model
2023-05-12T12:22:37,843   copying src/dendropy/model/continuous.py -> build/lib/dendropy/model
2023-05-12T12:22:37,848   copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model
2023-05-12T12:22:37,853   copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model
2023-05-12T12:22:37,857   copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model
2023-05-12T12:22:37,861   copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model
2023-05-12T12:22:37,869   creating build/lib/dendropy/simulate
2023-05-12T12:22:37,871   copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate
2023-05-12T12:22:37,874   copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate
2023-05-12T12:22:37,879   copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate
2023-05-12T12:22:37,882   copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate
2023-05-12T12:22:37,888   creating build/lib/dendropy/utility
2023-05-12T12:22:37,890   copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,895   copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,899   copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,902   copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,906   copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,910   copying src/dendropy/utility/error.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,914   copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,918   copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,921   copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,925   copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,930   copying src/dendropy/utility/container.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,936   copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,940   copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,943   copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,947   copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,950   copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,954   copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,958   copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility
2023-05-12T12:22:37,963   creating build/lib/dendropy/calculate
2023-05-12T12:22:37,965   copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate
2023-05-12T12:22:37,969   copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate
2023-05-12T12:22:37,973   copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate
2023-05-12T12:22:37,981   copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate
2023-05-12T12:22:37,985   copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate
2023-05-12T12:22:37,989   copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate
2023-05-12T12:22:37,994   copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate
2023-05-12T12:22:37,998   copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate
2023-05-12T12:22:38,002   copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate
2023-05-12T12:22:38,006   copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate
2023-05-12T12:22:38,012   copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate
2023-05-12T12:22:38,016   copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate
2023-05-12T12:22:38,022   creating build/lib/dendropy/interop
2023-05-12T12:22:38,023   copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,027   copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,031   copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,036   copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,039   copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,044   copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,048   copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,053   copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,056   copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,061   copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,067   copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,070   copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,076   copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,080   copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop
2023-05-12T12:22:38,086   creating build/lib/dendropy/mathlib
2023-05-12T12:22:38,088   copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib
2023-05-12T12:22:38,092   copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib
2023-05-12T12:22:38,095   copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib
2023-05-12T12:22:38,098   copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib
2023-05-12T12:22:38,103   creating build/lib/dendropy/datamodel/treemodel
2023-05-12T12:22:38,105   copying src/dendropy/datamodel/treemodel/_bipartition.py -> build/lib/dendropy/datamodel/treemodel
2023-05-12T12:22:38,110   copying src/dendropy/datamodel/treemodel/_tree.py -> build/lib/dendropy/datamodel/treemodel
2023-05-12T12:22:38,123   copying src/dendropy/datamodel/treemodel/_node.py -> build/lib/dendropy/datamodel/treemodel
2023-05-12T12:22:38,130   copying src/dendropy/datamodel/treemodel/__init__.py -> build/lib/dendropy/datamodel/treemodel
2023-05-12T12:22:38,134   copying src/dendropy/datamodel/treemodel/_edge.py -> build/lib/dendropy/datamodel/treemodel
2023-05-12T12:22:38,139   creating build/lib/dendropy/utility/libexec
2023-05-12T12:22:38,141   copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec
2023-05-12T12:22:38,145   running egg_info
2023-05-12T12:22:38,290   writing src/DendroPy.egg-info/PKG-INFO
2023-05-12T12:22:38,295   writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
2023-05-12T12:22:38,299   deleting src/DendroPy.egg-info/entry_points.txt
2023-05-12T12:22:38,301   writing requirements to src/DendroPy.egg-info/requires.txt
2023-05-12T12:22:38,303   writing top-level names to src/DendroPy.egg-info/top_level.txt
2023-05-12T12:22:38,391   reading manifest file 'src/DendroPy.egg-info/SOURCES.txt'
2023-05-12T12:22:38,446   reading manifest template 'MANIFEST.in'
2023-05-12T12:22:38,448   warning: no files found matching 'doc/Makefile'
2023-05-12T12:22:38,448   warning: no files found matching '*' under directory 'doc/source'
2023-05-12T12:22:38,860   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2023-05-12T12:22:38,870   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2023-05-12T12:22:38,877   warning: no previously-included files matching '.gitignore' found anywhere in distribution
2023-05-12T12:22:38,885   warning: no previously-included files matching '.gitattributes' found anywhere in distribution
2023-05-12T12:22:38,892   warning: no previously-included files matching '.idea' found anywhere in distribution
2023-05-12T12:22:38,899   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2023-05-12T12:22:38,900   adding license file 'LICENSE.rst'
2023-05-12T12:22:38,900   adding license file 'AUTHORS.rst'
2023-05-12T12:22:38,999   writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
2023-05-12T12:22:39,097   running build_scripts
2023-05-12T12:22:39,098   creating build/scripts-3.7
2023-05-12T12:22:39,101   copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.7
2023-05-12T12:22:39,116   copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.7
2023-05-12T12:22:39,121   copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.7
2023-05-12T12:22:39,124   changing mode of build/scripts-3.7/sumtrees.py from 644 to 755
2023-05-12T12:22:39,125   changing mode of build/scripts-3.7/sumlabels.py from 644 to 755
2023-05-12T12:22:39,126   changing mode of build/scripts-3.7/dendropy-format from 644 to 755
2023-05-12T12:22:39,190   /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-05-12T12:22:39,191   !!

2023-05-12T12:22:39,192           ********************************************************************************
2023-05-12T12:22:39,192           Please avoid running ``setup.py`` directly.
2023-05-12T12:22:39,192           Instead, use pypa/build, pypa/installer, pypa/build or
2023-05-12T12:22:39,193           other standards-based tools.

2023-05-12T12:22:39,193           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-05-12T12:22:39,194           ********************************************************************************

2023-05-12T12:22:39,194   !!
2023-05-12T12:22:39,195     self.initialize_options()
2023-05-12T12:22:39,250   installing to build/bdist.linux-armv7l/wheel
2023-05-12T12:22:39,251   running install
2023-05-12T12:22:39,312   running install_lib
2023-05-12T12:22:39,373   creating build/bdist.linux-armv7l
2023-05-12T12:22:39,373   creating build/bdist.linux-armv7l/wheel
2023-05-12T12:22:39,377   creating build/bdist.linux-armv7l/wheel/dendropy
2023-05-12T12:22:39,380   creating build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-05-12T12:22:39,382   copying build/lib/dendropy/datamodel/datasetmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-05-12T12:22:39,390   creating build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-05-12T12:22:39,392   copying build/lib/dendropy/datamodel/treemodel/_bipartition.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-05-12T12:22:39,398   copying build/lib/dendropy/datamodel/treemodel/_tree.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-05-12T12:22:39,413   copying build/lib/dendropy/datamodel/treemodel/_node.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-05-12T12:22:39,421   copying build/lib/dendropy/datamodel/treemodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-05-12T12:22:39,425   copying build/lib/dendropy/datamodel/treemodel/_edge.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-05-12T12:22:39,429   copying build/lib/dendropy/datamodel/charmatrixmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-05-12T12:22:39,437   copying build/lib/dendropy/datamodel/basemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-05-12T12:22:39,446   copying build/lib/dendropy/datamodel/charstatemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-05-12T12:22:39,453   copying build/lib/dendropy/datamodel/treecollectionmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-05-12T12:22:39,466   copying build/lib/dendropy/datamodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-05-12T12:22:39,469   copying build/lib/dendropy/datamodel/taxonmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-05-12T12:22:39,480   creating build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,481   copying build/lib/dendropy/legacy/treesplit.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,486   copying build/lib/dendropy/legacy/treemanip.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,490   copying build/lib/dendropy/legacy/seqmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,493   copying build/lib/dendropy/legacy/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,498   copying build/lib/dendropy/legacy/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,501   copying build/lib/dendropy/legacy/treecalc.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,506   copying build/lib/dendropy/legacy/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,510   copying build/lib/dendropy/legacy/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,514   copying build/lib/dendropy/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,517   copying build/lib/dendropy/legacy/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,521   copying build/lib/dendropy/legacy/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,524   copying build/lib/dendropy/legacy/seqsim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,528   copying build/lib/dendropy/legacy/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,533   copying build/lib/dendropy/legacy/ncbi.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-05-12T12:22:39,538   creating build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,540   copying build/lib/dendropy/dataio/fastawriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,544   copying build/lib/dendropy/dataio/nexusprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,549   copying build/lib/dendropy/dataio/nexusyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,553   copying build/lib/dendropy/dataio/nexmlyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,557   copying build/lib/dendropy/dataio/newickyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,560   copying build/lib/dendropy/dataio/tokenizer.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,565   copying build/lib/dendropy/dataio/phylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,569   copying build/lib/dendropy/dataio/nexmlwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,575   copying build/lib/dendropy/dataio/xmlprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,579   copying build/lib/dendropy/dataio/nexmlreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,585   copying build/lib/dendropy/dataio/fastareader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,589   copying build/lib/dendropy/dataio/newickreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,595   copying build/lib/dendropy/dataio/newick.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,599   copying build/lib/dendropy/dataio/nexuswriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,604   copying build/lib/dendropy/dataio/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,608   copying build/lib/dendropy/dataio/multiphylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,612   copying build/lib/dendropy/dataio/nexusreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,619   copying build/lib/dendropy/dataio/ioservice.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,624   copying build/lib/dendropy/dataio/phylipwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,629   copying build/lib/dendropy/dataio/newickwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-05-12T12:22:39,635   creating build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,637   copying build/lib/dendropy/model/multispeciescoalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,642   copying build/lib/dendropy/model/discrete.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,647   copying build/lib/dendropy/model/birthdeath.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,655   copying build/lib/dendropy/model/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,659   copying build/lib/dendropy/model/protractedspeciation.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,665   copying build/lib/dendropy/model/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,670   copying build/lib/dendropy/model/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,675   copying build/lib/dendropy/model/parsimony.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,680   copying build/lib/dendropy/model/treeshape.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,683   copying build/lib/dendropy/model/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-05-12T12:22:39,689   creating build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-05-12T12:22:39,691   copying build/lib/dendropy/simulate/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-05-12T12:22:39,695   copying build/lib/dendropy/simulate/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-05-12T12:22:39,700   copying build/lib/dendropy/simulate/charsim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-05-12T12:22:39,703   copying build/lib/dendropy/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-05-12T12:22:39,707   copying build/lib/dendropy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy
2023-05-12T12:22:39,713   creating build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,714   copying build/lib/dendropy/utility/messaging.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,719   copying build/lib/dendropy/utility/textprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,724   creating build/bdist.linux-armv7l/wheel/dendropy/utility/libexec
2023-05-12T12:22:39,726   copying build/lib/dendropy/utility/libexec/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility/libexec
2023-05-12T12:22:39,730   copying build/lib/dendropy/utility/bitprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,735   copying build/lib/dendropy/utility/urlio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,738   copying build/lib/dendropy/utility/timeprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,742   copying build/lib/dendropy/utility/error.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,746   copying build/lib/dendropy/utility/filesys.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,750   copying build/lib/dendropy/utility/deprecate.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,754   copying build/lib/dendropy/utility/cli.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,759   copying build/lib/dendropy/utility/bibtex.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,763   copying build/lib/dendropy/utility/container.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,769   copying build/lib/dendropy/utility/metavar.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,773   copying build/lib/dendropy/utility/constants.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,776   copying build/lib/dendropy/utility/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,780   copying build/lib/dendropy/utility/terminal.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,784   copying build/lib/dendropy/utility/vcsinfo.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,788   copying build/lib/dendropy/utility/processio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,792   copying build/lib/dendropy/utility/debug.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-05-12T12:22:39,796   creating build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,798   copying build/lib/dendropy/calculate/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,802   copying build/lib/dendropy/calculate/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,806   copying build/lib/dendropy/calculate/phylogeneticdistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,815   copying build/lib/dendropy/calculate/treescore.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,818   copying build/lib/dendropy/calculate/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,823   copying build/lib/dendropy/calculate/treemeasure.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,828   copying build/lib/dendropy/calculate/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,832   copying build/lib/dendropy/calculate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,836   copying build/lib/dendropy/calculate/profiledistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,840   copying build/lib/dendropy/calculate/treecompare.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,846   copying build/lib/dendropy/calculate/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,851   copying build/lib/dendropy/calculate/combinatorics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-05-12T12:22:39,855   creating build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,857   copying build/lib/dendropy/interop/ete.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,861   copying build/lib/dendropy/interop/seqgen.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,865   copying build/lib/dendropy/interop/rspr.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,870   copying build/lib/dendropy/interop/entrez.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,873   copying build/lib/dendropy/interop/rstats.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,878   copying build/lib/dendropy/interop/ape.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,882   copying build/lib/dendropy/interop/itol.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,887   copying build/lib/dendropy/interop/biopython.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,891   copying build/lib/dendropy/interop/gbif.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,895   copying build/lib/dendropy/interop/raxml.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,902   copying build/lib/dendropy/interop/muscle.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,905   copying build/lib/dendropy/interop/paup.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,911   copying build/lib/dendropy/interop/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,915   copying build/lib/dendropy/interop/genbank.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-05-12T12:22:39,921   copying build/lib/dendropy/__main__.py -> build/bdist.linux-armv7l/wheel/dendropy
2023-05-12T12:22:39,925   creating build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-05-12T12:22:39,927   copying build/lib/dendropy/mathlib/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-05-12T12:22:39,931   copying build/lib/dendropy/mathlib/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-05-12T12:22:39,935   copying build/lib/dendropy/mathlib/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-05-12T12:22:39,939   copying build/lib/dendropy/mathlib/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-05-12T12:22:39,942   running install_egg_info
2023-05-12T12:22:40,010   Copying src/DendroPy.egg-info to build/bdist.linux-armv7l/wheel/DendroPy-4.6.0-py3.7.egg-info
2023-05-12T12:22:40,036   running install_scripts
2023-05-12T12:22:40,039   creating build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.data
2023-05-12T12:22:40,039   creating build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.data/scripts
2023-05-12T12:22:40,042   copying build/scripts-3.7/dendropy-format -> build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.data/scripts
2023-05-12T12:22:40,046   copying build/scripts-3.7/sumtrees.py -> build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.data/scripts
2023-05-12T12:22:40,056   copying build/scripts-3.7/sumlabels.py -> build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.data/scripts
2023-05-12T12:22:40,059   changing mode of build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.data/scripts/dendropy-format to 755
2023-05-12T12:22:40,060   changing mode of build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.data/scripts/sumtrees.py to 755
2023-05-12T12:22:40,061   changing mode of build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.data/scripts/sumlabels.py to 755
2023-05-12T12:22:40,098   adding license file "LICENSE.rst" (matched pattern "LICEN[CS]E*")
2023-05-12T12:22:40,100   adding license file "AUTHORS.rst" (matched pattern "AUTHORS*")
2023-05-12T12:22:40,110   creating build/bdist.linux-armv7l/wheel/DendroPy-4.6.0.dist-info/WHEEL
2023-05-12T12:22:40,114   creating '/tmp/pip-wheel-hwdvfjcu/DendroPy-4.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-05-12T12:22:40,121   adding 'DendroPy-4.6.0.data/scripts/dendropy-format'
2023-05-12T12:22:40,126   adding 'DendroPy-4.6.0.data/scripts/sumlabels.py'
2023-05-12T12:22:40,152   adding 'DendroPy-4.6.0.data/scripts/sumtrees.py'
2023-05-12T12:22:40,162   adding 'dendropy/__init__.py'
2023-05-12T12:22:40,165   adding 'dendropy/__main__.py'
2023-05-12T12:22:40,169   adding 'dendropy/calculate/__init__.py'
2023-05-12T12:22:40,172   adding 'dendropy/calculate/combinatorics.py'
2023-05-12T12:22:40,174   adding 'dendropy/calculate/mathfn.py'
2023-05-12T12:22:40,190   adding 'dendropy/calculate/phylogeneticdistance.py'
2023-05-12T12:22:40,197   adding 'dendropy/calculate/popgenstat.py'
2023-05-12T12:22:40,201   adding 'dendropy/calculate/probability.py'
2023-05-12T12:22:40,206   adding 'dendropy/calculate/profiledistance.py'
2023-05-12T12:22:40,212   adding 'dendropy/calculate/statistics.py'
2023-05-12T12:22:40,221   adding 'dendropy/calculate/treecompare.py'
2023-05-12T12:22:40,226   adding 'dendropy/calculate/treemeasure.py'
2023-05-12T12:22:40,228   adding 'dendropy/calculate/treescore.py'
2023-05-12T12:22:40,233   adding 'dendropy/calculate/treesum.py'
2023-05-12T12:22:40,238   adding 'dendropy/dataio/__init__.py'
2023-05-12T12:22:40,242   adding 'dendropy/dataio/fastareader.py'
2023-05-12T12:22:40,245   adding 'dendropy/dataio/fastawriter.py'
2023-05-12T12:22:40,250   adding 'dendropy/dataio/ioservice.py'
2023-05-12T12:22:40,254   adding 'dendropy/dataio/multiphylipreader.py'
2023-05-12T12:22:40,256   adding 'dendropy/dataio/newick.py'
2023-05-12T12:22:40,265   adding 'dendropy/dataio/newickreader.py'
2023-05-12T12:22:40,271   adding 'dendropy/dataio/newickwriter.py'
2023-05-12T12:22:40,275   adding 'dendropy/dataio/newickyielder.py'
2023-05-12T12:22:40,285   adding 'dendropy/dataio/nexmlreader.py'
2023-05-12T12:22:40,294   adding 'dendropy/dataio/nexmlwriter.py'
2023-05-12T12:22:40,297   adding 'dendropy/dataio/nexmlyielder.py'
2023-05-12T12:22:40,303   adding 'dendropy/dataio/nexusprocessing.py'
2023-05-12T12:22:40,320   adding 'dendropy/dataio/nexusreader.py'
2023-05-12T12:22:40,329   adding 'dendropy/dataio/nexuswriter.py'
2023-05-12T12:22:40,333   adding 'dendropy/dataio/nexusyielder.py'
2023-05-12T12:22:40,338   adding 'dendropy/dataio/phylipreader.py'
2023-05-12T12:22:40,341   adding 'dendropy/dataio/phylipwriter.py'
2023-05-12T12:22:40,345   adding 'dendropy/dataio/tokenizer.py'
2023-05-12T12:22:40,349   adding 'dendropy/dataio/xmlprocessing.py'
2023-05-12T12:22:40,353   adding 'dendropy/datamodel/__init__.py'
2023-05-12T12:22:40,367   adding 'dendropy/datamodel/basemodel.py'
2023-05-12T12:22:40,390   adding 'dendropy/datamodel/charmatrixmodel.py'
2023-05-12T12:22:40,405   adding 'dendropy/datamodel/charstatemodel.py'
2023-05-12T12:22:40,412   adding 'dendropy/datamodel/datasetmodel.py'
2023-05-12T12:22:40,435   adding 'dendropy/datamodel/taxonmodel.py'
2023-05-12T12:22:40,467   adding 'dendropy/datamodel/treecollectionmodel.py'
2023-05-12T12:22:40,474   adding 'dendropy/datamodel/treemodel/__init__.py'
2023-05-12T12:22:40,481   adding 'dendropy/datamodel/treemodel/_bipartition.py'
2023-05-12T12:22:40,485   adding 'dendropy/datamodel/treemodel/_edge.py'
2023-05-12T12:22:40,502   adding 'dendropy/datamodel/treemodel/_node.py'
2023-05-12T12:22:40,549   adding 'dendropy/datamodel/treemodel/_tree.py'
2023-05-12T12:22:40,556   adding 'dendropy/interop/__init__.py'
2023-05-12T12:22:40,560   adding 'dendropy/interop/ape.py'
2023-05-12T12:22:40,563   adding 'dendropy/interop/biopython.py'
2023-05-12T12:22:40,566   adding 'dendropy/interop/entrez.py'
2023-05-12T12:22:40,568   adding 'dendropy/interop/ete.py'
2023-05-12T12:22:40,573   adding 'dendropy/interop/gbif.py'
2023-05-12T12:22:40,581   adding 'dendropy/interop/genbank.py'
2023-05-12T12:22:40,587   adding 'dendropy/interop/itol.py'
2023-05-12T12:22:40,589   adding 'dendropy/interop/muscle.py'
2023-05-12T12:22:40,599   adding 'dendropy/interop/paup.py'
2023-05-12T12:22:40,610   adding 'dendropy/interop/raxml.py'
2023-05-12T12:22:40,614   adding 'dendropy/interop/rspr.py'
2023-05-12T12:22:40,618   adding 'dendropy/interop/rstats.py'
2023-05-12T12:22:40,622   adding 'dendropy/interop/seqgen.py'
2023-05-12T12:22:40,626   adding 'dendropy/legacy/__init__.py'
2023-05-12T12:22:40,629   adding 'dendropy/legacy/coalescent.py'
2023-05-12T12:22:40,631   adding 'dendropy/legacy/continuous.py'
2023-05-12T12:22:40,636   adding 'dendropy/legacy/ncbi.py'
2023-05-12T12:22:40,639   adding 'dendropy/legacy/popgensim.py'
2023-05-12T12:22:40,641   adding 'dendropy/legacy/popgenstat.py'
2023-05-12T12:22:40,645   adding 'dendropy/legacy/reconcile.py'
2023-05-12T12:22:40,648   adding 'dendropy/legacy/seqmodel.py'
2023-05-12T12:22:40,651   adding 'dendropy/legacy/seqsim.py'
2023-05-12T12:22:40,654   adding 'dendropy/legacy/treecalc.py'
2023-05-12T12:22:40,657   adding 'dendropy/legacy/treemanip.py'
2023-05-12T12:22:40,660   adding 'dendropy/legacy/treesim.py'
2023-05-12T12:22:40,663   adding 'dendropy/legacy/treesplit.py'
2023-05-12T12:22:40,666   adding 'dendropy/legacy/treesum.py'
2023-05-12T12:22:40,670   adding 'dendropy/mathlib/__init__.py'
2023-05-12T12:22:40,672   adding 'dendropy/mathlib/mathfn.py'
2023-05-12T12:22:40,675   adding 'dendropy/mathlib/probability.py'
2023-05-12T12:22:40,677   adding 'dendropy/mathlib/statistics.py'
2023-05-12T12:22:40,681   adding 'dendropy/model/__init__.py'
2023-05-12T12:22:40,699   adding 'dendropy/model/birthdeath.py'
2023-05-12T12:22:40,711   adding 'dendropy/model/coalescent.py'
2023-05-12T12:22:40,718   adding 'dendropy/model/continuous.py'
2023-05-12T12:22:40,725   adding 'dendropy/model/discrete.py'
2023-05-12T12:22:40,730   adding 'dendropy/model/multispeciescoalescent.py'
2023-05-12T12:22:40,735   adding 'dendropy/model/parsimony.py'
2023-05-12T12:22:40,747   adding 'dendropy/model/protractedspeciation.py'
2023-05-12T12:22:40,755   adding 'dendropy/model/reconcile.py'
2023-05-12T12:22:40,758   adding 'dendropy/model/treeshape.py'
2023-05-12T12:22:40,762   adding 'dendropy/simulate/__init__.py'
2023-05-12T12:22:40,764   adding 'dendropy/simulate/charsim.py'
2023-05-12T12:22:40,769   adding 'dendropy/simulate/popgensim.py'
2023-05-12T12:22:40,772   adding 'dendropy/simulate/treesim.py'
2023-05-12T12:22:40,776   adding 'dendropy/utility/__init__.py'
2023-05-12T12:22:40,780   adding 'dendropy/utility/bibtex.py'
2023-05-12T12:22:40,783   adding 'dendropy/utility/bitprocessing.py'
2023-05-12T12:22:40,787   adding 'dendropy/utility/cli.py'
2023-05-12T12:22:40,789   adding 'dendropy/utility/constants.py'
2023-05-12T12:22:40,802   adding 'dendropy/utility/container.py'
2023-05-12T12:22:40,805   adding 'dendropy/utility/debug.py'
2023-05-12T12:22:40,808   adding 'dendropy/utility/deprecate.py'
2023-05-12T12:22:40,812   adding 'dendropy/utility/error.py'
2023-05-12T12:22:40,816   adding 'dendropy/utility/filesys.py'
2023-05-12T12:22:40,820   adding 'dendropy/utility/messaging.py'
2023-05-12T12:22:40,822   adding 'dendropy/utility/metavar.py'
2023-05-12T12:22:40,825   adding 'dendropy/utility/processio.py'
2023-05-12T12:22:40,828   adding 'dendropy/utility/terminal.py'
2023-05-12T12:22:40,833   adding 'dendropy/utility/textprocessing.py'
2023-05-12T12:22:40,836   adding 'dendropy/utility/timeprocessing.py'
2023-05-12T12:22:40,838   adding 'dendropy/utility/urlio.py'
2023-05-12T12:22:40,842   adding 'dendropy/utility/vcsinfo.py'
2023-05-12T12:22:40,846   adding 'dendropy/utility/libexec/__init__.py'
2023-05-12T12:22:40,848   adding 'DendroPy-4.6.0.dist-info/AUTHORS.rst'
2023-05-12T12:22:40,851   adding 'DendroPy-4.6.0.dist-info/LICENSE.rst'
2023-05-12T12:22:40,853   adding 'DendroPy-4.6.0.dist-info/METADATA'
2023-05-12T12:22:40,855   adding 'DendroPy-4.6.0.dist-info/WHEEL'
2023-05-12T12:22:40,857   adding 'DendroPy-4.6.0.dist-info/top_level.txt'
2023-05-12T12:22:40,859   adding 'DendroPy-4.6.0.dist-info/zip-safe'
2023-05-12T12:22:40,863   adding 'DendroPy-4.6.0.dist-info/RECORD'
2023-05-12T12:22:40,887   removing build/bdist.linux-armv7l/wheel
2023-05-12T12:22:41,104   Building wheel for dendropy (setup.py): finished with status 'done'
2023-05-12T12:22:41,125   Created wheel for dendropy: filename=DendroPy-4.6.0-py3-none-any.whl size=458403 sha256=967847ceda8c3c50c9c82bf0b17ad1cfed383857502a32878e1870fde0b9f662
2023-05-12T12:22:41,127   Stored in directory: /tmp/pip-ephem-wheel-cache-3mypbxw6/wheels/3e/eb/72/0f593fc3730a996db6c0b0ecf07a129ea4c49ec589a7994c89
2023-05-12T12:22:41,164 Successfully built dendropy
2023-05-12T12:22:41,211 Removed build tracker: '/tmp/pip-build-tracker-x1_8t5oe'