2023-05-12T12:48:41,774 Created temporary directory: /tmp/pip-build-tracker-6equt8in
2023-05-12T12:48:41,777 Initialized build tracking at /tmp/pip-build-tracker-6equt8in
2023-05-12T12:48:41,778 Created build tracker: /tmp/pip-build-tracker-6equt8in
2023-05-12T12:48:41,778 Entered build tracker: /tmp/pip-build-tracker-6equt8in
2023-05-12T12:48:41,780 Created temporary directory: /tmp/pip-wheel-vh6drk5i
2023-05-12T12:48:41,788 Created temporary directory: /tmp/pip-ephem-wheel-cache-s_oysgts
2023-05-12T12:48:41,839 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-12T12:48:41,847 2 location(s) to search for versions of openduck:
2023-05-12T12:48:41,847 * https://pypi.org/simple/openduck/
2023-05-12T12:48:41,847 * https://www.piwheels.org/simple/openduck/
2023-05-12T12:48:41,849 Fetching project page and analyzing links: https://pypi.org/simple/openduck/
2023-05-12T12:48:41,850 Getting page https://pypi.org/simple/openduck/
2023-05-12T12:48:41,853 Found index url https://pypi.org/simple/
2023-05-12T12:48:42,075 Fetched page https://pypi.org/simple/openduck/ as application/vnd.pypi.simple.v1+json
2023-05-12T12:48:42,078   Skipping link: No binaries permitted for openduck: https://files.pythonhosted.org/packages/53/ea/7a5934879e734e8d233fd50a08d0412504619e9c0c951e13354c00a2e84c/openduck-0.2.0.dev0-py3-none-any.whl (from https://pypi.org/simple/openduck/)
2023-05-12T12:48:42,079   Found link https://files.pythonhosted.org/packages/3d/b1/b1659d2131cbf3b20f3ac6f7c47a9ee8a807ddb293ba919ae18b501dc4c1/openduck-0.2.0.dev0.tar.gz (from https://pypi.org/simple/openduck/), version: 0.2.0.dev0
2023-05-12T12:48:42,080 Fetching project page and analyzing links: https://www.piwheels.org/simple/openduck/
2023-05-12T12:48:42,080 Getting page https://www.piwheels.org/simple/openduck/
2023-05-12T12:48:42,082 Found index url https://www.piwheels.org/simple/
2023-05-12T12:48:42,312 Fetched page https://www.piwheels.org/simple/openduck/ as text/html
2023-05-12T12:48:42,315   Skipping link: No binaries permitted for openduck: https://www.piwheels.org/simple/openduck/openduck-0.2.0.dev0-py3-none-any.whl#sha256=26f70d59b7951b85a2e1989dee2d474d324aeee9dfb5e27959f38251a844ccbf (from https://www.piwheels.org/simple/openduck/)
2023-05-12T12:48:42,315 Skipping link: not a file: https://www.piwheels.org/simple/openduck/
2023-05-12T12:48:42,316 Skipping link: not a file: https://pypi.org/simple/openduck/
2023-05-12T12:48:42,345 Given no hashes to check 1 links for project 'openduck': discarding no candidates
2023-05-12T12:48:42,372 Collecting openduck==0.2.0.dev0
2023-05-12T12:48:42,377   Created temporary directory: /tmp/pip-unpack-uqixeh42
2023-05-12T12:48:42,573   Downloading openduck-0.2.0.dev0.tar.gz (62 kB)
2023-05-12T12:48:42,896   Added openduck==0.2.0.dev0 from https://files.pythonhosted.org/packages/3d/b1/b1659d2131cbf3b20f3ac6f7c47a9ee8a807ddb293ba919ae18b501dc4c1/openduck-0.2.0.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-6equt8in'
2023-05-12T12:48:42,900   Running setup.py (path:/tmp/pip-wheel-vh6drk5i/openduck_8c319bd95c0c484895602f21c48ad762/setup.py) egg_info for package openduck
2023-05-12T12:48:42,901   Created temporary directory: /tmp/pip-pip-egg-info-i0fkib4_
2023-05-12T12:48:42,902   Preparing metadata (setup.py): started
2023-05-12T12:48:42,904   Running command python setup.py egg_info
2023-05-12T12:48:44,394   ['duck', 'scripts', 'duck.steps', 'duck.utils']
2023-05-12T12:48:44,396   running egg_info
2023-05-12T12:48:44,397   creating /tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info
2023-05-12T12:48:44,456   writing /tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info/PKG-INFO
2023-05-12T12:48:44,460   writing dependency_links to /tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info/dependency_links.txt
2023-05-12T12:48:44,463   writing entry points to /tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info/entry_points.txt
2023-05-12T12:48:44,466   writing requirements to /tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info/requires.txt
2023-05-12T12:48:44,469   writing top-level names to /tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info/top_level.txt
2023-05-12T12:48:44,471   writing manifest file '/tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info/SOURCES.txt'
2023-05-12T12:48:44,670   reading manifest file '/tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info/SOURCES.txt'
2023-05-12T12:48:44,673   adding license file 'LICENSE'
2023-05-12T12:48:44,682   writing manifest file '/tmp/pip-pip-egg-info-i0fkib4_/openduck.egg-info/SOURCES.txt'
2023-05-12T12:48:44,802   Preparing metadata (setup.py): finished with status 'done'
2023-05-12T12:48:44,816   Source in /tmp/pip-wheel-vh6drk5i/openduck_8c319bd95c0c484895602f21c48ad762 has version 0.2.0.dev0, which satisfies requirement openduck==0.2.0.dev0 from https://files.pythonhosted.org/packages/3d/b1/b1659d2131cbf3b20f3ac6f7c47a9ee8a807ddb293ba919ae18b501dc4c1/openduck-0.2.0.dev0.tar.gz
2023-05-12T12:48:44,817   Removed openduck==0.2.0.dev0 from https://files.pythonhosted.org/packages/3d/b1/b1659d2131cbf3b20f3ac6f7c47a9ee8a807ddb293ba919ae18b501dc4c1/openduck-0.2.0.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-6equt8in'
2023-05-12T12:48:44,828 Created temporary directory: /tmp/pip-unpack-qutmp0mt
2023-05-12T12:48:44,829 Building wheels for collected packages: openduck
2023-05-12T12:48:44,838   Created temporary directory: /tmp/pip-wheel-3t3iokw2
2023-05-12T12:48:44,839   Building wheel for openduck (setup.py): started
2023-05-12T12:48:44,841   Destination directory: /tmp/pip-wheel-3t3iokw2
2023-05-12T12:48:44,841   Running command python setup.py bdist_wheel
2023-05-12T12:48:45,939   ['duck', 'scripts', 'duck.steps', 'duck.utils']
2023-05-12T12:48:46,789   running bdist_wheel
2023-05-12T12:48:46,965   running build
2023-05-12T12:48:46,966   running build_py
2023-05-12T12:48:47,029   creating build
2023-05-12T12:48:47,030   creating build/lib
2023-05-12T12:48:47,032   creating build/lib/duck
2023-05-12T12:48:47,034   copying duck/__init__.py -> build/lib/duck
2023-05-12T12:48:47,039   creating build/lib/scripts
2023-05-12T12:48:47,041   copying scripts/openduck.py -> build/lib/scripts
2023-05-12T12:48:47,049   copying scripts/__init__.py -> build/lib/scripts
2023-05-12T12:48:47,052   copying scripts/duck_analysis_visualisation.py -> build/lib/scripts
2023-05-12T12:48:47,058   creating build/lib/duck/steps
2023-05-12T12:48:47,060   copying duck/steps/steered_md.py -> build/lib/duck/steps
2023-05-12T12:48:47,065   copying duck/steps/chunk.py -> build/lib/duck/steps
2023-05-12T12:48:47,070   copying duck/steps/parametrize.py -> build/lib/duck/steps
2023-05-12T12:48:47,074   copying duck/steps/__init__.py -> build/lib/duck/steps
2023-05-12T12:48:47,077   copying duck/steps/prepare_mmgbsa.py -> build/lib/duck/steps
2023-05-12T12:48:47,081   copying duck/steps/equlibrate.py -> build/lib/duck/steps
2023-05-12T12:48:47,085   copying duck/steps/prepare.py -> build/lib/duck/steps
2023-05-12T12:48:47,089   copying duck/steps/normal_md.py -> build/lib/duck/steps
2023-05-12T12:48:47,095   creating build/lib/duck/utils
2023-05-12T12:48:47,097   copying duck/utils/vmd_template.py -> build/lib/duck/utils
2023-05-12T12:48:47,101   copying duck/utils/amber_inputs.py -> build/lib/duck/utils
2023-05-12T12:48:47,106   copying duck/utils/get_from_fragalysis.py -> build/lib/duck/utils
2023-05-12T12:48:47,109   copying duck/utils/__init__.py -> build/lib/duck/utils
2023-05-12T12:48:47,112   copying duck/utils/duck_stuff.py -> build/lib/duck/utils
2023-05-12T12:48:47,116   copying duck/utils/analysis_and_report.py -> build/lib/duck/utils
2023-05-12T12:48:47,122   copying duck/utils/cal_ints.py -> build/lib/duck/utils
2023-05-12T12:48:47,126   copying duck/utils/gen_system.py -> build/lib/duck/utils
2023-05-12T12:48:47,130   copying duck/utils/check_system.py -> build/lib/duck/utils
2023-05-12T12:48:47,145   creating build/lib/duck/parameters
2023-05-12T12:48:47,147   copying duck/parameters/tip3p.offxml -> build/lib/duck/parameters
2023-05-12T12:48:47,152   copying duck/parameters/smirnoff99Frosst.offxml -> build/lib/duck/parameters
2023-05-12T12:48:47,158   creating build/lib/duck/parameters/waters
2023-05-12T12:48:47,160   copying duck/parameters/waters/tip3p.prmtop -> build/lib/duck/parameters/waters
2023-05-12T12:48:47,165   copying duck/parameters/waters/spce.prmtop -> build/lib/duck/parameters/waters
2023-05-12T12:48:47,170   copying duck/parameters/waters/tip4pew.prmtop -> build/lib/duck/parameters/waters
2023-05-12T12:48:47,174   copying duck/parameters/waters/water.pdb -> build/lib/duck/parameters/waters
2023-05-12T12:48:47,179   copying duck/parameters/waters/tip3p.inpcrd -> build/lib/duck/parameters/waters
2023-05-12T12:48:47,183   copying duck/parameters/waters/spce.inpcrd -> build/lib/duck/parameters/waters
2023-05-12T12:48:47,186   copying duck/parameters/waters/tip4pew.inpcrd -> build/lib/duck/parameters/waters
2023-05-12T12:48:47,190   creating build/lib/duck/parameters/tleap
2023-05-12T12:48:47,192   copying duck/parameters/tleap/leaprc.protein.ff14SB -> build/lib/duck/parameters/tleap
2023-05-12T12:48:47,196   copying duck/parameters/tleap/leaprc.ff14SB.redq -> build/lib/duck/parameters/tleap
2023-05-12T12:48:47,201   creating build/lib/duck/templates
2023-05-12T12:48:47,202   creating build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,204   copying duck/templates/amber_inputs/md.in -> build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,208   copying duck/templates/amber_inputs/dist_duck.rst -> build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,212   copying duck/templates/amber_inputs/heating.in -> build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,217   copying duck/templates/amber_inputs/min.in -> build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,221   copying duck/templates/amber_inputs/equilibration.in -> build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,225   copying duck/templates/amber_inputs/first_heating.in -> build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,229   copying duck/templates/amber_inputs/dist_md.rst -> build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,233   copying duck/templates/amber_inputs/smd.in -> build/lib/duck/templates/amber_inputs
2023-05-12T12:48:47,237   creating build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,239   copying duck/templates/queueing_templates/commands.txt -> build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,244   copying duck/templates/queueing_templates/local.q -> build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,248   copying duck/templates/queueing_templates/functions.txt -> build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,252   copying duck/templates/queueing_templates/getWqbValues.py -> build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,256   copying duck/templates/queueing_templates/SGE_array.q -> build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,260   copying duck/templates/queueing_templates/Slurm.q -> build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,264   copying duck/templates/queueing_templates/SGE.q -> build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,268   copying duck/templates/queueing_templates/Slurm_array.q -> build/lib/duck/templates/queueing_templates
2023-05-12T12:48:47,346   /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-05-12T12:48:47,346   !!

2023-05-12T12:48:47,347           ********************************************************************************
2023-05-12T12:48:47,347           Please avoid running ``setup.py`` directly.
2023-05-12T12:48:47,348           Instead, use pypa/build, pypa/installer, pypa/build or
2023-05-12T12:48:47,348           other standards-based tools.

2023-05-12T12:48:47,349           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-05-12T12:48:47,349           ********************************************************************************

2023-05-12T12:48:47,350   !!
2023-05-12T12:48:47,350     self.initialize_options()
2023-05-12T12:48:47,407   installing to build/bdist.linux-armv7l/wheel
2023-05-12T12:48:47,407   running install
2023-05-12T12:48:47,466   running install_lib
2023-05-12T12:48:47,529   creating build/bdist.linux-armv7l
2023-05-12T12:48:47,530   creating build/bdist.linux-armv7l/wheel
2023-05-12T12:48:47,534   creating build/bdist.linux-armv7l/wheel/duck
2023-05-12T12:48:47,538   creating build/bdist.linux-armv7l/wheel/duck/templates
2023-05-12T12:48:47,541   creating build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,543   copying build/lib/duck/templates/queueing_templates/commands.txt -> build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,548   copying build/lib/duck/templates/queueing_templates/local.q -> build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,552   copying build/lib/duck/templates/queueing_templates/functions.txt -> build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,556   copying build/lib/duck/templates/queueing_templates/getWqbValues.py -> build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,560   copying build/lib/duck/templates/queueing_templates/SGE_array.q -> build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,564   copying build/lib/duck/templates/queueing_templates/Slurm.q -> build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,568   copying build/lib/duck/templates/queueing_templates/SGE.q -> build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,572   copying build/lib/duck/templates/queueing_templates/Slurm_array.q -> build/bdist.linux-armv7l/wheel/duck/templates/queueing_templates
2023-05-12T12:48:47,577   creating build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,579   copying build/lib/duck/templates/amber_inputs/md.in -> build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,583   copying build/lib/duck/templates/amber_inputs/dist_duck.rst -> build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,587   copying build/lib/duck/templates/amber_inputs/heating.in -> build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,591   copying build/lib/duck/templates/amber_inputs/min.in -> build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,595   copying build/lib/duck/templates/amber_inputs/equilibration.in -> build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,599   copying build/lib/duck/templates/amber_inputs/first_heating.in -> build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,603   copying build/lib/duck/templates/amber_inputs/dist_md.rst -> build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,606   copying build/lib/duck/templates/amber_inputs/smd.in -> build/bdist.linux-armv7l/wheel/duck/templates/amber_inputs
2023-05-12T12:48:47,611   creating build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,613   copying build/lib/duck/steps/steered_md.py -> build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,618   copying build/lib/duck/steps/chunk.py -> build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,622   copying build/lib/duck/steps/parametrize.py -> build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,627   copying build/lib/duck/steps/__init__.py -> build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,630   copying build/lib/duck/steps/prepare_mmgbsa.py -> build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,633   copying build/lib/duck/steps/equlibrate.py -> build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,638   copying build/lib/duck/steps/prepare.py -> build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,641   copying build/lib/duck/steps/normal_md.py -> build/bdist.linux-armv7l/wheel/duck/steps
2023-05-12T12:48:47,647   creating build/bdist.linux-armv7l/wheel/duck/parameters
2023-05-12T12:48:47,650   creating build/bdist.linux-armv7l/wheel/duck/parameters/tleap
2023-05-12T12:48:47,652   copying build/lib/duck/parameters/tleap/leaprc.protein.ff14SB -> build/bdist.linux-armv7l/wheel/duck/parameters/tleap
2023-05-12T12:48:47,656   copying build/lib/duck/parameters/tleap/leaprc.ff14SB.redq -> build/bdist.linux-armv7l/wheel/duck/parameters/tleap
2023-05-12T12:48:47,660   copying build/lib/duck/parameters/tip3p.offxml -> build/bdist.linux-armv7l/wheel/duck/parameters
2023-05-12T12:48:47,664   creating build/bdist.linux-armv7l/wheel/duck/parameters/waters
2023-05-12T12:48:47,666   copying build/lib/duck/parameters/waters/tip3p.prmtop -> build/bdist.linux-armv7l/wheel/duck/parameters/waters
2023-05-12T12:48:47,671   copying build/lib/duck/parameters/waters/spce.prmtop -> build/bdist.linux-armv7l/wheel/duck/parameters/waters
2023-05-12T12:48:47,675   copying build/lib/duck/parameters/waters/tip4pew.prmtop -> build/bdist.linux-armv7l/wheel/duck/parameters/waters
2023-05-12T12:48:47,679   copying build/lib/duck/parameters/waters/water.pdb -> build/bdist.linux-armv7l/wheel/duck/parameters/waters
2023-05-12T12:48:47,683   copying build/lib/duck/parameters/waters/tip3p.inpcrd -> build/bdist.linux-armv7l/wheel/duck/parameters/waters
2023-05-12T12:48:47,686   copying build/lib/duck/parameters/waters/spce.inpcrd -> build/bdist.linux-armv7l/wheel/duck/parameters/waters
2023-05-12T12:48:47,689   copying build/lib/duck/parameters/waters/tip4pew.inpcrd -> build/bdist.linux-armv7l/wheel/duck/parameters/waters
2023-05-12T12:48:47,693   copying build/lib/duck/parameters/smirnoff99Frosst.offxml -> build/bdist.linux-armv7l/wheel/duck/parameters
2023-05-12T12:48:47,699   copying build/lib/duck/__init__.py -> build/bdist.linux-armv7l/wheel/duck
2023-05-12T12:48:47,704   creating build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,706   copying build/lib/duck/utils/vmd_template.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,712   copying build/lib/duck/utils/amber_inputs.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,717   copying build/lib/duck/utils/get_from_fragalysis.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,721   copying build/lib/duck/utils/__init__.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,724   copying build/lib/duck/utils/duck_stuff.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,728   copying build/lib/duck/utils/analysis_and_report.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,733   copying build/lib/duck/utils/cal_ints.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,737   copying build/lib/duck/utils/gen_system.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,742   copying build/lib/duck/utils/check_system.py -> build/bdist.linux-armv7l/wheel/duck/utils
2023-05-12T12:48:47,746   creating build/bdist.linux-armv7l/wheel/scripts
2023-05-12T12:48:47,748   copying build/lib/scripts/openduck.py -> build/bdist.linux-armv7l/wheel/scripts
2023-05-12T12:48:47,755   copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts
2023-05-12T12:48:47,758   copying build/lib/scripts/duck_analysis_visualisation.py -> build/bdist.linux-armv7l/wheel/scripts
2023-05-12T12:48:47,763   running install_egg_info
2023-05-12T12:48:47,913   running egg_info
2023-05-12T12:48:47,969   writing openduck.egg-info/PKG-INFO
2023-05-12T12:48:47,973   writing dependency_links to openduck.egg-info/dependency_links.txt
2023-05-12T12:48:47,978   writing entry points to openduck.egg-info/entry_points.txt
2023-05-12T12:48:47,981   writing requirements to openduck.egg-info/requires.txt
2023-05-12T12:48:47,984   writing top-level names to openduck.egg-info/top_level.txt
2023-05-12T12:48:48,062   reading manifest file 'openduck.egg-info/SOURCES.txt'
2023-05-12T12:48:48,070   adding license file 'LICENSE'
2023-05-12T12:48:48,081   writing manifest file 'openduck.egg-info/SOURCES.txt'
2023-05-12T12:48:48,084   Copying openduck.egg-info to build/bdist.linux-armv7l/wheel/openduck-0.2.0.dev0-py3.7.egg-info
2023-05-12T12:48:48,108   running install_scripts
2023-05-12T12:48:48,145   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-05-12T12:48:48,155   creating build/bdist.linux-armv7l/wheel/openduck-0.2.0.dev0.dist-info/WHEEL
2023-05-12T12:48:48,160   creating '/tmp/pip-wheel-3t3iokw2/openduck-0.2.0.dev0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-05-12T12:48:48,166   adding 'duck/__init__.py'
2023-05-12T12:48:48,177   adding 'duck/parameters/smirnoff99Frosst.offxml'
2023-05-12T12:48:48,182   adding 'duck/parameters/tip3p.offxml'
2023-05-12T12:48:48,187   adding 'duck/parameters/tleap/leaprc.ff14SB.redq'
2023-05-12T12:48:48,191   adding 'duck/parameters/tleap/leaprc.protein.ff14SB'
2023-05-12T12:48:48,195   adding 'duck/parameters/waters/spce.inpcrd'
2023-05-12T12:48:48,199   adding 'duck/parameters/waters/spce.prmtop'
2023-05-12T12:48:48,203   adding 'duck/parameters/waters/tip3p.inpcrd'
2023-05-12T12:48:48,206   adding 'duck/parameters/waters/tip3p.prmtop'
2023-05-12T12:48:48,210   adding 'duck/parameters/waters/tip4pew.inpcrd'
2023-05-12T12:48:48,213   adding 'duck/parameters/waters/tip4pew.prmtop'
2023-05-12T12:48:48,217   adding 'duck/parameters/waters/water.pdb'
2023-05-12T12:48:48,221   adding 'duck/steps/__init__.py'
2023-05-12T12:48:48,227   adding 'duck/steps/chunk.py'
2023-05-12T12:48:48,232   adding 'duck/steps/equlibrate.py'
2023-05-12T12:48:48,236   adding 'duck/steps/normal_md.py'
2023-05-12T12:48:48,241   adding 'duck/steps/parametrize.py'
2023-05-12T12:48:48,244   adding 'duck/steps/prepare.py'
2023-05-12T12:48:48,247   adding 'duck/steps/prepare_mmgbsa.py'
2023-05-12T12:48:48,252   adding 'duck/steps/steered_md.py'
2023-05-12T12:48:48,257   adding 'duck/templates/amber_inputs/dist_duck.rst'
2023-05-12T12:48:48,261   adding 'duck/templates/amber_inputs/dist_md.rst'
2023-05-12T12:48:48,264   adding 'duck/templates/amber_inputs/equilibration.in'
2023-05-12T12:48:48,267   adding 'duck/templates/amber_inputs/first_heating.in'
2023-05-12T12:48:48,270   adding 'duck/templates/amber_inputs/heating.in'
2023-05-12T12:48:48,273   adding 'duck/templates/amber_inputs/md.in'
2023-05-12T12:48:48,276   adding 'duck/templates/amber_inputs/min.in'
2023-05-12T12:48:48,299   adding 'duck/templates/amber_inputs/smd.in'
2023-05-12T12:48:48,304   adding 'duck/templates/queueing_templates/SGE.q'
2023-05-12T12:48:48,307   adding 'duck/templates/queueing_templates/SGE_array.q'
2023-05-12T12:48:48,310   adding 'duck/templates/queueing_templates/Slurm.q'
2023-05-12T12:48:48,313   adding 'duck/templates/queueing_templates/Slurm_array.q'
2023-05-12T12:48:48,317   adding 'duck/templates/queueing_templates/commands.txt'
2023-05-12T12:48:48,320   adding 'duck/templates/queueing_templates/functions.txt'
2023-05-12T12:48:48,324   adding 'duck/templates/queueing_templates/getWqbValues.py'
2023-05-12T12:48:48,327   adding 'duck/templates/queueing_templates/local.q'
2023-05-12T12:48:48,331   adding 'duck/utils/__init__.py'
2023-05-12T12:48:48,336   adding 'duck/utils/amber_inputs.py'
2023-05-12T12:48:48,345   adding 'duck/utils/analysis_and_report.py'
2023-05-12T12:48:48,349   adding 'duck/utils/cal_ints.py'
2023-05-12T12:48:48,353   adding 'duck/utils/check_system.py'
2023-05-12T12:48:48,357   adding 'duck/utils/duck_stuff.py'
2023-05-12T12:48:48,360   adding 'duck/utils/gen_system.py'
2023-05-12T12:48:48,364   adding 'duck/utils/get_from_fragalysis.py'
2023-05-12T12:48:48,368   adding 'duck/utils/vmd_template.py'
2023-05-12T12:48:48,374   adding 'scripts/__init__.py'
2023-05-12T12:48:48,379   adding 'scripts/duck_analysis_visualisation.py'
2023-05-12T12:48:48,393   adding 'scripts/openduck.py'
2023-05-12T12:48:48,398   adding 'openduck-0.2.0.dev0.dist-info/LICENSE'
2023-05-12T12:48:48,401   adding 'openduck-0.2.0.dev0.dist-info/METADATA'
2023-05-12T12:48:48,403   adding 'openduck-0.2.0.dev0.dist-info/WHEEL'
2023-05-12T12:48:48,405   adding 'openduck-0.2.0.dev0.dist-info/entry_points.txt'
2023-05-12T12:48:48,406   adding 'openduck-0.2.0.dev0.dist-info/top_level.txt'
2023-05-12T12:48:48,409   adding 'openduck-0.2.0.dev0.dist-info/RECORD'
2023-05-12T12:48:48,415   removing build/bdist.linux-armv7l/wheel
2023-05-12T12:48:48,599   Building wheel for openduck (setup.py): finished with status 'done'
2023-05-12T12:48:48,608   Created wheel for openduck: filename=openduck-0.2.0.dev0-py3-none-any.whl size=77595 sha256=75d47d83000805b42bf4994deb4e5c82b29a479089cad773b7fb9dfcd3c04e0a
2023-05-12T12:48:48,611   Stored in directory: /tmp/pip-ephem-wheel-cache-s_oysgts/wheels/75/ed/23/694cc5e380b2aaf8f6aabf32c9422120e20cd7788e284ab5ed
2023-05-12T12:48:48,641 Successfully built openduck
2023-05-12T12:48:48,653 Removed build tracker: '/tmp/pip-build-tracker-6equt8in'