2023-05-12T16:20:32,512 Created temporary directory: /tmp/pip-build-tracker-ip_j713k 2023-05-12T16:20:32,515 Initialized build tracking at /tmp/pip-build-tracker-ip_j713k 2023-05-12T16:20:32,516 Created build tracker: /tmp/pip-build-tracker-ip_j713k 2023-05-12T16:20:32,516 Entered build tracker: /tmp/pip-build-tracker-ip_j713k 2023-05-12T16:20:32,517 Created temporary directory: /tmp/pip-wheel-r4k5pjag 2023-05-12T16:20:32,526 Created temporary directory: /tmp/pip-ephem-wheel-cache-qg1poo10 2023-05-12T16:20:32,581 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-12T16:20:32,589 2 location(s) to search for versions of sprint2: 2023-05-12T16:20:32,589 * https://pypi.org/simple/sprint2/ 2023-05-12T16:20:32,589 * https://www.piwheels.org/simple/sprint2/ 2023-05-12T16:20:32,590 Fetching project page and analyzing links: https://pypi.org/simple/sprint2/ 2023-05-12T16:20:32,591 Getting page https://pypi.org/simple/sprint2/ 2023-05-12T16:20:32,595 Found index url https://pypi.org/simple/ 2023-05-12T16:20:32,791 Fetched page https://pypi.org/simple/sprint2/ as application/vnd.pypi.simple.v1+json 2023-05-12T16:20:32,793 Skipping link: No binaries permitted for sprint2: https://files.pythonhosted.org/packages/6a/1d/10ad9eea5b64b137eda214055faf93a3a56a8233fd6e7291965889c1f352/sprint2-0.1-py2.py3-none-any.whl (from https://pypi.org/simple/sprint2/) 2023-05-12T16:20:32,794 Found link https://files.pythonhosted.org/packages/50/e1/81407c6373b310014c25062fb269d8d2dd2bb647da90648c88b92b88bbf3/sprint2-0.1.tar.gz (from https://pypi.org/simple/sprint2/), version: 0.1 2023-05-12T16:20:32,795 Fetching project page and analyzing links: https://www.piwheels.org/simple/sprint2/ 2023-05-12T16:20:32,796 Getting page https://www.piwheels.org/simple/sprint2/ 2023-05-12T16:20:32,798 Found index url https://www.piwheels.org/simple/ 2023-05-12T16:20:33,364 Fetched page https://www.piwheels.org/simple/sprint2/ as text/html 2023-05-12T16:20:33,366 Skipping link: No binaries permitted for sprint2: https://www.piwheels.org/simple/sprint2/sprint2-0.1-py3-none-any.whl#sha256=5b465fade186e6565a2998662c101d20a4b46458fc88ab1f9f27eb0663bf0143 (from https://www.piwheels.org/simple/sprint2/) 2023-05-12T16:20:33,367 Skipping link: not a file: https://www.piwheels.org/simple/sprint2/ 2023-05-12T16:20:33,368 Skipping link: not a file: https://pypi.org/simple/sprint2/ 2023-05-12T16:20:33,397 Given no hashes to check 1 links for project 'sprint2': discarding no candidates 2023-05-12T16:20:33,425 Collecting sprint2==0.1 2023-05-12T16:20:33,429 Created temporary directory: /tmp/pip-unpack-puu_78ep 2023-05-12T16:20:33,606 Downloading sprint2-0.1.tar.gz (27 kB) 2023-05-12T16:20:33,743 Added sprint2==0.1 from https://files.pythonhosted.org/packages/50/e1/81407c6373b310014c25062fb269d8d2dd2bb647da90648c88b92b88bbf3/sprint2-0.1.tar.gz to build tracker '/tmp/pip-build-tracker-ip_j713k' 2023-05-12T16:20:33,747 Running setup.py (path:/tmp/pip-wheel-r4k5pjag/sprint2_1e07fc16de334d828c7239923f3d357f/setup.py) egg_info for package sprint2 2023-05-12T16:20:33,748 Created temporary directory: /tmp/pip-pip-egg-info-kydrmw32 2023-05-12T16:20:33,749 Preparing metadata (setup.py): started 2023-05-12T16:20:33,751 Running command python setup.py egg_info 2023-05-12T16:20:35,198 running egg_info 2023-05-12T16:20:35,202 creating /tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info 2023-05-12T16:20:35,260 writing /tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info/PKG-INFO 2023-05-12T16:20:35,264 writing dependency_links to /tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info/dependency_links.txt 2023-05-12T16:20:35,268 writing entry points to /tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info/entry_points.txt 2023-05-12T16:20:35,271 writing requirements to /tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info/requires.txt 2023-05-12T16:20:35,273 writing top-level names to /tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info/top_level.txt 2023-05-12T16:20:35,275 writing manifest file '/tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info/SOURCES.txt' 2023-05-12T16:20:35,459 reading manifest file '/tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info/SOURCES.txt' 2023-05-12T16:20:35,467 writing manifest file '/tmp/pip-pip-egg-info-kydrmw32/sprint2.egg-info/SOURCES.txt' 2023-05-12T16:20:35,588 Preparing metadata (setup.py): finished with status 'done' 2023-05-12T16:20:35,600 Source in /tmp/pip-wheel-r4k5pjag/sprint2_1e07fc16de334d828c7239923f3d357f has version 0.1, which satisfies requirement sprint2==0.1 from https://files.pythonhosted.org/packages/50/e1/81407c6373b310014c25062fb269d8d2dd2bb647da90648c88b92b88bbf3/sprint2-0.1.tar.gz 2023-05-12T16:20:35,602 Removed sprint2==0.1 from https://files.pythonhosted.org/packages/50/e1/81407c6373b310014c25062fb269d8d2dd2bb647da90648c88b92b88bbf3/sprint2-0.1.tar.gz from build tracker '/tmp/pip-build-tracker-ip_j713k' 2023-05-12T16:20:35,612 Created temporary directory: /tmp/pip-unpack-n9rnia6h 2023-05-12T16:20:35,614 Building wheels for collected packages: sprint2 2023-05-12T16:20:35,622 Created temporary directory: /tmp/pip-wheel-u3h0rwdi 2023-05-12T16:20:35,623 Building wheel for sprint2 (setup.py): started 2023-05-12T16:20:35,625 Destination directory: /tmp/pip-wheel-u3h0rwdi 2023-05-12T16:20:35,626 Running command python setup.py bdist_wheel 2023-05-12T16:20:37,518 running bdist_wheel 2023-05-12T16:20:37,711 running build 2023-05-12T16:20:37,711 running build_py 2023-05-12T16:20:37,774 creating build 2023-05-12T16:20:37,774 creating build/lib 2023-05-12T16:20:37,776 creating build/lib/MaskAGref 2023-05-12T16:20:37,778 copying MaskAGref/MaskAGref.py -> build/lib/MaskAGref 2023-05-12T16:20:37,783 copying MaskAGref/__init__.py -> build/lib/MaskAGref 2023-05-12T16:20:37,787 creating build/lib/getRES 2023-05-12T16:20:37,789 copying getRES/step1_SNVcalling.py -> build/lib/getRES 2023-05-12T16:20:37,796 copying getRES/__init__.py -> build/lib/getRES 2023-05-12T16:20:37,800 copying getRES/step2_annotation_based.py -> build/lib/getRES 2023-05-12T16:20:37,805 copying getRES/step3_dsRNA_based.py -> build/lib/getRES 2023-05-12T16:20:37,812 creating build/lib/getDsRNA 2023-05-12T16:20:37,813 copying getDsRNA/step1_transcript_blat.py -> build/lib/getDsRNA 2023-05-12T16:20:37,818 copying getDsRNA/step6_dsRNA.py -> build/lib/getDsRNA 2023-05-12T16:20:37,822 copying getDsRNA/step5_merge_dsRNA.py -> build/lib/getDsRNA 2023-05-12T16:20:37,826 copying getDsRNA/__init__.py -> build/lib/getDsRNA 2023-05-12T16:20:37,830 copying getDsRNA/step2_transcript_dspair.py -> build/lib/getDsRNA 2023-05-12T16:20:37,834 copying getDsRNA/step3_bedtools_sorted_rmLC.py -> build/lib/getDsRNA 2023-05-12T16:20:37,838 copying getDsRNA/step4_combine_by_chr.py -> build/lib/getDsRNA 2023-05-12T16:20:37,913 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-12T16:20:37,914 !! 2023-05-12T16:20:37,915 ******************************************************************************** 2023-05-12T16:20:37,915 Please avoid running ``setup.py`` directly. 2023-05-12T16:20:37,915 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-12T16:20:37,916 other standards-based tools. 2023-05-12T16:20:37,916 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-12T16:20:37,917 ******************************************************************************** 2023-05-12T16:20:37,917 !! 2023-05-12T16:20:37,918 self.initialize_options() 2023-05-12T16:20:37,973 installing to build/bdist.linux-armv7l/wheel 2023-05-12T16:20:37,974 running install 2023-05-12T16:20:38,034 running install_lib 2023-05-12T16:20:38,096 creating build/bdist.linux-armv7l 2023-05-12T16:20:38,097 creating build/bdist.linux-armv7l/wheel 2023-05-12T16:20:38,100 creating build/bdist.linux-armv7l/wheel/MaskAGref 2023-05-12T16:20:38,102 copying build/lib/MaskAGref/MaskAGref.py -> build/bdist.linux-armv7l/wheel/MaskAGref 2023-05-12T16:20:38,107 copying build/lib/MaskAGref/__init__.py -> build/bdist.linux-armv7l/wheel/MaskAGref 2023-05-12T16:20:38,113 creating build/bdist.linux-armv7l/wheel/getRES 2023-05-12T16:20:38,114 copying build/lib/getRES/step1_SNVcalling.py -> build/bdist.linux-armv7l/wheel/getRES 2023-05-12T16:20:38,121 copying build/lib/getRES/__init__.py -> build/bdist.linux-armv7l/wheel/getRES 2023-05-12T16:20:38,126 copying build/lib/getRES/step2_annotation_based.py -> build/bdist.linux-armv7l/wheel/getRES 2023-05-12T16:20:38,131 copying build/lib/getRES/step3_dsRNA_based.py -> build/bdist.linux-armv7l/wheel/getRES 2023-05-12T16:20:38,137 creating build/bdist.linux-armv7l/wheel/getDsRNA 2023-05-12T16:20:38,139 copying build/lib/getDsRNA/step1_transcript_blat.py -> build/bdist.linux-armv7l/wheel/getDsRNA 2023-05-12T16:20:38,144 copying build/lib/getDsRNA/step6_dsRNA.py -> build/bdist.linux-armv7l/wheel/getDsRNA 2023-05-12T16:20:38,147 copying build/lib/getDsRNA/step5_merge_dsRNA.py -> build/bdist.linux-armv7l/wheel/getDsRNA 2023-05-12T16:20:38,152 copying build/lib/getDsRNA/__init__.py -> build/bdist.linux-armv7l/wheel/getDsRNA 2023-05-12T16:20:38,155 copying build/lib/getDsRNA/step2_transcript_dspair.py -> build/bdist.linux-armv7l/wheel/getDsRNA 2023-05-12T16:20:38,160 copying build/lib/getDsRNA/step3_bedtools_sorted_rmLC.py -> build/bdist.linux-armv7l/wheel/getDsRNA 2023-05-12T16:20:38,163 copying build/lib/getDsRNA/step4_combine_by_chr.py -> build/bdist.linux-armv7l/wheel/getDsRNA 2023-05-12T16:20:38,167 running install_egg_info 2023-05-12T16:20:38,328 running egg_info 2023-05-12T16:20:38,385 writing sprint2.egg-info/PKG-INFO 2023-05-12T16:20:38,389 writing dependency_links to sprint2.egg-info/dependency_links.txt 2023-05-12T16:20:38,393 writing entry points to sprint2.egg-info/entry_points.txt 2023-05-12T16:20:38,395 writing requirements to sprint2.egg-info/requires.txt 2023-05-12T16:20:38,397 writing top-level names to sprint2.egg-info/top_level.txt 2023-05-12T16:20:38,461 reading manifest file 'sprint2.egg-info/SOURCES.txt' 2023-05-12T16:20:38,472 writing manifest file 'sprint2.egg-info/SOURCES.txt' 2023-05-12T16:20:38,474 Copying sprint2.egg-info to build/bdist.linux-armv7l/wheel/sprint2-0.1-py3.7.egg-info 2023-05-12T16:20:38,497 running install_scripts 2023-05-12T16:20:38,534 creating build/bdist.linux-armv7l/wheel/sprint2-0.1.dist-info/WHEEL 2023-05-12T16:20:38,539 creating '/tmp/pip-wheel-u3h0rwdi/sprint2-0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-12T16:20:38,545 adding 'MaskAGref/MaskAGref.py' 2023-05-12T16:20:38,548 adding 'MaskAGref/__init__.py' 2023-05-12T16:20:38,552 adding 'getDsRNA/__init__.py' 2023-05-12T16:20:38,557 adding 'getDsRNA/step1_transcript_blat.py' 2023-05-12T16:20:38,561 adding 'getDsRNA/step2_transcript_dspair.py' 2023-05-12T16:20:38,565 adding 'getDsRNA/step3_bedtools_sorted_rmLC.py' 2023-05-12T16:20:38,569 adding 'getDsRNA/step4_combine_by_chr.py' 2023-05-12T16:20:38,573 adding 'getDsRNA/step5_merge_dsRNA.py' 2023-05-12T16:20:38,576 adding 'getDsRNA/step6_dsRNA.py' 2023-05-12T16:20:38,581 adding 'getRES/__init__.py' 2023-05-12T16:20:38,592 adding 'getRES/step1_SNVcalling.py' 2023-05-12T16:20:38,600 adding 'getRES/step2_annotation_based.py' 2023-05-12T16:20:38,606 adding 'getRES/step3_dsRNA_based.py' 2023-05-12T16:20:38,611 adding 'sprint2-0.1.dist-info/METADATA' 2023-05-12T16:20:38,613 adding 'sprint2-0.1.dist-info/WHEEL' 2023-05-12T16:20:38,615 adding 'sprint2-0.1.dist-info/entry_points.txt' 2023-05-12T16:20:38,616 adding 'sprint2-0.1.dist-info/top_level.txt' 2023-05-12T16:20:38,618 adding 'sprint2-0.1.dist-info/RECORD' 2023-05-12T16:20:38,622 removing build/bdist.linux-armv7l/wheel 2023-05-12T16:20:38,783 Building wheel for sprint2 (setup.py): finished with status 'done' 2023-05-12T16:20:38,791 Created wheel for sprint2: filename=sprint2-0.1-py3-none-any.whl size=32150 sha256=b565f1cc1cfaf90dfed6a7f2304bb4ed754093bea13f1c344b1b47d380625e59 2023-05-12T16:20:38,793 Stored in directory: /tmp/pip-ephem-wheel-cache-qg1poo10/wheels/3b/1f/46/e3838fafb5a7ce7203a7680943cd09c902f23e367ee78ae892 2023-05-12T16:20:38,823 Successfully built sprint2 2023-05-12T16:20:38,832 Removed build tracker: '/tmp/pip-build-tracker-ip_j713k'