2023-05-13T06:41:59,769 Created temporary directory: /tmp/pip-build-tracker-fh4bo_tg 2023-05-13T06:41:59,772 Initialized build tracking at /tmp/pip-build-tracker-fh4bo_tg 2023-05-13T06:41:59,772 Created build tracker: /tmp/pip-build-tracker-fh4bo_tg 2023-05-13T06:41:59,773 Entered build tracker: /tmp/pip-build-tracker-fh4bo_tg 2023-05-13T06:41:59,774 Created temporary directory: /tmp/pip-wheel-33qefhdn 2023-05-13T06:41:59,783 Created temporary directory: /tmp/pip-ephem-wheel-cache-_67nw2x_ 2023-05-13T06:41:59,846 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-13T06:41:59,855 2 location(s) to search for versions of sequana: 2023-05-13T06:41:59,855 * https://pypi.org/simple/sequana/ 2023-05-13T06:41:59,855 * https://www.piwheels.org/simple/sequana/ 2023-05-13T06:41:59,856 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2023-05-13T06:41:59,858 Getting page https://pypi.org/simple/sequana/ 2023-05-13T06:41:59,862 Found index url https://pypi.org/simple/ 2023-05-13T06:42:00,213 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2023-05-13T06:42:00,254 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.2 2023-05-13T06:42:00,255 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.3 2023-05-13T06:42:00,256 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.0 2023-05-13T06:42:00,257 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz (from https://pypi.org/simple/sequana/), 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https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2023-05-13T06:42:00,279 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2023-05-13T06:42:00,280 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2023-05-13T06:42:00,281 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2023-05-13T06:42:00,282 Found link 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https://files.pythonhosted.org/packages/9f/48/3b9effb1920f07143a86c1e6e5d7c1a7bc2ff51c32ebf5823bb4e4512ce6/sequana-0.13.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.13.2 2023-05-13T06:42:00,316 Found link https://files.pythonhosted.org/packages/49/60/8f18bb5e3810e9a920660fd004dbf6732ebdb277980c67c872cda1a710e8/sequana-0.14.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.0 2023-05-13T06:42:00,316 Found link https://files.pythonhosted.org/packages/89/da/2b2cbc7011b549eab9e7cad1bd6380939f760ef1ad189a8a8c8bd13c1416/sequana-0.14.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.1 2023-05-13T06:42:00,317 Found link https://files.pythonhosted.org/packages/05/c4/d113f6b8b8266e64fdbce7c645dc100e177e62b65f5de91c1ed0edd69f7c/sequana-0.14.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.2 2023-05-13T06:42:00,318 Found link https://files.pythonhosted.org/packages/0e/66/cca72effbb41d5ff34f2fc49e3b4ddc804245547df2f2e57ab7e534a52c0/sequana-0.14.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.3 2023-05-13T06:42:00,319 Found link https://files.pythonhosted.org/packages/28/9c/16feabf3ddcf6c2ecd71eebfba708d6f7c875af4a3584fecd2cbbef8f434/sequana-0.14.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.4 2023-05-13T06:42:00,320 Found link https://files.pythonhosted.org/packages/6d/74/98493274ca25359800e8f4ca53f49e968ef1a1c0d47fc5eaeb40f09829b2/sequana-0.14.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.5 2023-05-13T06:42:00,320 Found link https://files.pythonhosted.org/packages/f8/80/d0d913a03f6e7bf8d9b77812d9bc834793478d41f80bc483a91bbb70a58b/sequana-0.14.6.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.6 2023-05-13T06:42:00,321 Found link https://files.pythonhosted.org/packages/4f/9f/8802f849199c88d3f52625b9792bbb38e91dc59d6586c6b784f2c8352019/sequana-0.15.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.0 2023-05-13T06:42:00,322 Found link https://files.pythonhosted.org/packages/bd/1a/5efc8a202063ba6f1dfc30eb8440e434a1d91aa0e0434c8d9cc735db5c1c/sequana-0.15.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.1 2023-05-13T06:42:00,323 Fetching project page and analyzing links: https://www.piwheels.org/simple/sequana/ 2023-05-13T06:42:00,324 Getting page https://www.piwheels.org/simple/sequana/ 2023-05-13T06:42:00,327 Found index url https://www.piwheels.org/simple/ 2023-05-13T06:42:00,707 Fetched page https://www.piwheels.org/simple/sequana/ as text/html 2023-05-13T06:42:00,765 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.15.1-py3-none-any.whl#sha256=f32a8101b80d241c24935b0659789f820e7424d00ddc7badaf6a112917566885 (from 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2023-05-13T06:42:00,799 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.5.0-py3-none-any.whl#sha256=410e59d0dddfb9c8977a537b6aaeb53c664ffe5934aec53b30dda9c317a48b38 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,799 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.2-py3-none-any.whl#sha256=7972b2552d679935fa79ea6fb51b0465efc24cb36547875633f9ac334aebcb8d (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,800 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.1-py3-none-any.whl#sha256=4b67e3ac6f5e54aa37b0da900d08a73ec9f5517735d2ae91fb038acab735a773 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,801 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.0-py3-none-any.whl#sha256=3080e21d1193e999b07f07f7227c3e70af6a9655e9c706bbfb1d6be64be0e71f (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,801 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.3.0-py3-none-any.whl#sha256=784c45559b3813a77c854c88c7f87f069fc80854dab49c4ce554d9e8d955bfee (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,802 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.1-py3-none-any.whl#sha256=6c243101661c5b7e001970929b3f0854775ff25ec464016bac56bed727d1af42 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,802 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.0-py3-none-any.whl#sha256=3f93bab506968797bfa09bd546a7890f00035664062d87d06c5cc0cae18ae47d (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,803 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.21-py3-none-any.whl#sha256=39c81be55199636ec0613bef138ee06c6484b7fe1fe77cfecd372a3c757a1060 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,804 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.20-py3-none-any.whl#sha256=443bc96ad7fb6fd2e4f68246cd5e0d14513ec95d0b41dcad255eff04d5ec5448 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,804 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.19-py3-none-any.whl#sha256=072add6f657fd5ba0c484c282d0eae596f1b81bbbe5d73d01ee428afd896b26e (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,805 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.18-py3-none-any.whl#sha256=325c4e727752bdcd6411fc583c6c67f5c153ccefe6a6fa61a5bb136c4cacb24f (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,806 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.17.1-py3-none-any.whl#sha256=42ab5898af408588dff9d91d1e90f24ce831d1fc6c6298c2ab58efd248995a84 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,807 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.16-py3-none-any.whl#sha256=8f1f80eb30386474322cbc9cb6d8ccb98397b4ebefa290886f2631f3b3540d56 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,807 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.15-py3-none-any.whl#sha256=d285757bc8a46c7b331b3a27a79a559517e57b337e0d1381e8049e125f91b558 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,808 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.14-py3-none-any.whl#sha256=ced50d95b3a00f2f8103c06a1cb6bb4097d8d4a08c461bf26525f6afe8ff75e0 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,809 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.13-py3-none-any.whl#sha256=d79163ff3005e50c03bd3d241bd28c77fc27b149ca3cafcaac73dd11f3da756a (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,809 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.12-py3-none-any.whl#sha256=3f04e8007283308a1ca403222a81dfa0b39e862fc4b273b877ac7c0515aa1bed (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,810 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.11-py3-none-any.whl#sha256=0514b5d913fc13bc5bd0581143c312ce0e8962bd493655d11666cd1ffc4cae27 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,811 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.10-py3-none-any.whl#sha256=407656fa50b3fc2277e6d63fcd545fc4e9c13092a89a2a5cc782f84d008725b5 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,811 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.9-py3-none-any.whl#sha256=d388a5c84fd9f1adb5094860b47e54b8ec1fc5dd60da99b5b7a4bd92471e1e5b (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,812 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.8-py3-none-any.whl#sha256=25d68d94847d23aecd8d532f01ab95b7a8318fb5dc9ad5bbc87731b0968dc4ea (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,812 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.7-py3-none-any.whl#sha256=ccad69fd14b518346bb120b0790f15e4e949a563a0b1e560b9410a9d10d00f42 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,813 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.6-py3-none-any.whl#sha256=610326506e644e9df180931d8a20a48852a8196ba9c4d0e9aa6d1acb88d4e615 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,814 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.5-py3-none-any.whl#sha256=6fba4d02c27c802f9371c940699ef0ece1e24bffb7553bcb9720cc07ca2a66aa (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,814 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.4-py3-none-any.whl#sha256=8f3002523e9b7584a718eb2f1282a811eee489863f47e56aff0094be65fd04d0 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,815 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,816 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,817 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,818 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,818 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2023-05-13T06:42:00,819 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2023-05-13T06:42:00,820 Skipping link: not a file: https://pypi.org/simple/sequana/ 2023-05-13T06:42:00,887 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2023-05-13T06:42:00,921 Collecting sequana==0.15.1 2023-05-13T06:42:00,926 Created temporary directory: /tmp/pip-unpack-bhv44gqk 2023-05-13T06:42:01,126 Downloading sequana-0.15.1.tar.gz (1.6 MB) 2023-05-13T06:42:03,550 Added sequana==0.15.1 from https://files.pythonhosted.org/packages/bd/1a/5efc8a202063ba6f1dfc30eb8440e434a1d91aa0e0434c8d9cc735db5c1c/sequana-0.15.1.tar.gz to build tracker '/tmp/pip-build-tracker-fh4bo_tg' 2023-05-13T06:42:03,556 Running setup.py (path:/tmp/pip-wheel-33qefhdn/sequana_a4b1599d4c5b45dc982464c87e541059/setup.py) egg_info for package sequana 2023-05-13T06:42:03,558 Created temporary directory: /tmp/pip-pip-egg-info-dzyy7fkv 2023-05-13T06:42:03,559 Preparing metadata (setup.py): started 2023-05-13T06:42:03,561 Running command python setup.py egg_info 2023-05-13T06:42:05,578 running egg_info 2023-05-13T06:42:05,581 creating /tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info 2023-05-13T06:42:05,651 writing /tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info/PKG-INFO 2023-05-13T06:42:05,660 writing dependency_links to /tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info/dependency_links.txt 2023-05-13T06:42:05,666 writing entry points to /tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info/entry_points.txt 2023-05-13T06:42:05,671 writing requirements to /tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info/requires.txt 2023-05-13T06:42:05,673 writing top-level names to /tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info/top_level.txt 2023-05-13T06:42:05,676 writing manifest file '/tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info/SOURCES.txt' 2023-05-13T06:42:06,471 reading manifest file '/tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info/SOURCES.txt' 2023-05-13T06:42:06,476 reading manifest template 'MANIFEST.in' 2023-05-13T06:42:06,483 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-05-13T06:42:06,488 warning: no previously-included files matching '*pyc' found under directory '*' 2023-05-13T06:42:06,878 warning: no files found matching 'test/requirements*txt' 2023-05-13T06:42:06,883 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-05-13T06:42:06,887 warning: no previously-included files matching '*' found under directory 'test' 2023-05-13T06:42:06,890 warning: no previously-included files matching '*' found under directory 'doc' 2023-05-13T06:42:06,893 warning: no previously-included files found matching 'sequana/rm2.py' 2023-05-13T06:42:06,894 adding license file 'LICENSE' 2023-05-13T06:42:06,935 writing manifest file '/tmp/pip-pip-egg-info-dzyy7fkv/sequana.egg-info/SOURCES.txt' 2023-05-13T06:42:07,068 Preparing metadata (setup.py): finished with status 'done' 2023-05-13T06:42:07,086 Source in /tmp/pip-wheel-33qefhdn/sequana_a4b1599d4c5b45dc982464c87e541059 has version 0.15.1, which satisfies requirement sequana==0.15.1 from https://files.pythonhosted.org/packages/bd/1a/5efc8a202063ba6f1dfc30eb8440e434a1d91aa0e0434c8d9cc735db5c1c/sequana-0.15.1.tar.gz 2023-05-13T06:42:07,088 Removed sequana==0.15.1 from https://files.pythonhosted.org/packages/bd/1a/5efc8a202063ba6f1dfc30eb8440e434a1d91aa0e0434c8d9cc735db5c1c/sequana-0.15.1.tar.gz from build tracker '/tmp/pip-build-tracker-fh4bo_tg' 2023-05-13T06:42:07,104 Created temporary directory: /tmp/pip-unpack-jkyjcq37 2023-05-13T06:42:07,106 Building wheels for collected packages: sequana 2023-05-13T06:42:07,115 Created temporary directory: /tmp/pip-wheel-w5dabnjt 2023-05-13T06:42:07,116 Building wheel for sequana (setup.py): started 2023-05-13T06:42:07,119 Destination directory: /tmp/pip-wheel-w5dabnjt 2023-05-13T06:42:07,119 Running command python setup.py bdist_wheel 2023-05-13T06:42:09,471 running bdist_wheel 2023-05-13T06:42:09,682 running build 2023-05-13T06:42:09,682 running build_py 2023-05-13T06:42:09,766 creating build 2023-05-13T06:42:09,767 creating build/lib 2023-05-13T06:42:09,769 creating build/lib/sequana 2023-05-13T06:42:09,771 copying sequana/bamtools.py -> build/lib/sequana 2023-05-13T06:42:09,779 copying sequana/criteria.py -> build/lib/sequana 2023-05-13T06:42:09,784 copying sequana/vst.py -> build/lib/sequana 2023-05-13T06:42:09,788 copying sequana/salmon.py -> build/lib/sequana 2023-05-13T06:42:09,792 copying sequana/idr.py -> build/lib/sequana 2023-05-13T06:42:09,797 copying sequana/cnv.py -> build/lib/sequana 2023-05-13T06:42:09,801 copying sequana/frip.py -> build/lib/sequana 2023-05-13T06:42:09,805 copying sequana/cpg_islands.py -> build/lib/sequana 2023-05-13T06:42:09,809 copying sequana/iem.py -> build/lib/sequana 2023-05-13T06:42:09,814 copying sequana/bedtools.py -> build/lib/sequana 2023-05-13T06:42:09,823 copying sequana/mgi.py -> build/lib/sequana 2023-05-13T06:42:09,827 copying sequana/mh.py -> build/lib/sequana 2023-05-13T06:42:09,832 copying sequana/kegg.py -> build/lib/sequana 2023-05-13T06:42:09,836 copying sequana/canu_scanner.py -> build/lib/sequana 2023-05-13T06:42:09,841 copying sequana/demultiplex.py -> build/lib/sequana 2023-05-13T06:42:09,846 copying sequana/lazy.py -> build/lib/sequana 2023-05-13T06:42:09,850 copying sequana/taxonomy.py -> build/lib/sequana 2023-05-13T06:42:09,856 copying sequana/lazyimports.py -> build/lib/sequana 2023-05-13T06:42:09,861 copying sequana/codon.py -> build/lib/sequana 2023-05-13T06:42:09,865 copying sequana/iuapc.py -> build/lib/sequana 2023-05-13T06:42:09,870 copying sequana/mixture.py -> build/lib/sequana 2023-05-13T06:42:09,874 copying sequana/find_motif.py -> build/lib/sequana 2023-05-13T06:42:09,879 copying sequana/pacbio.py -> build/lib/sequana 2023-05-13T06:42:09,886 copying sequana/compare.py -> build/lib/sequana 2023-05-13T06:42:09,912 copying sequana/sniffer.py -> build/lib/sequana 2023-05-13T06:42:09,920 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2023-05-13T06:42:09,926 copying sequana/misc.py -> build/lib/sequana 2023-05-13T06:42:09,930 copying sequana/ribodesigner.py -> build/lib/sequana 2023-05-13T06:42:09,934 copying sequana/vcf_filter.py -> build/lib/sequana 2023-05-13T06:42:09,941 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2023-05-13T06:42:09,945 copying sequana/snpeff.py -> build/lib/sequana 2023-05-13T06:42:09,950 copying sequana/gff3.py -> build/lib/sequana 2023-05-13T06:42:09,956 copying sequana/phantom.py -> build/lib/sequana 2023-05-13T06:42:09,961 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2023-05-13T06:42:09,966 copying sequana/vcftools.py -> build/lib/sequana 2023-05-13T06:42:09,971 copying sequana/fastqc.py -> build/lib/sequana 2023-05-13T06:42:09,976 copying sequana/tools.py -> build/lib/sequana 2023-05-13T06:42:09,981 copying sequana/featurecounts.py -> build/lib/sequana 2023-05-13T06:42:09,987 copying sequana/summary.py -> build/lib/sequana 2023-05-13T06:42:09,992 copying sequana/homer.py -> build/lib/sequana 2023-05-13T06:42:09,996 copying sequana/trf.py -> build/lib/sequana 2023-05-13T06:42:10,001 copying sequana/genbank.py -> build/lib/sequana 2023-05-13T06:42:10,006 copying sequana/kmer.py -> build/lib/sequana 2023-05-13T06:42:10,010 copying sequana/assembly.py -> build/lib/sequana 2023-05-13T06:42:10,014 copying sequana/fastq.py -> build/lib/sequana 2023-05-13T06:42:10,021 copying sequana/bed.py -> build/lib/sequana 2023-05-13T06:42:10,025 copying sequana/itol.py -> build/lib/sequana 2023-05-13T06:42:10,030 copying sequana/fasta.py -> build/lib/sequana 2023-05-13T06:42:10,035 copying sequana/sequence.py -> build/lib/sequana 2023-05-13T06:42:10,042 copying sequana/databases.py -> build/lib/sequana 2023-05-13T06:42:10,048 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2023-05-13T06:42:10,052 copying sequana/isoseq.py -> build/lib/sequana 2023-05-13T06:42:10,058 copying sequana/gtf_fixer.py -> build/lib/sequana 2023-05-13T06:42:10,062 copying sequana/datatools.py -> build/lib/sequana 2023-05-13T06:42:10,066 copying sequana/macs3.py -> build/lib/sequana 2023-05-13T06:42:10,071 copying sequana/stats.py -> build/lib/sequana 2023-05-13T06:42:10,075 copying sequana/rnadiff.py -> build/lib/sequana 2023-05-13T06:42:10,082 copying sequana/running_median.py -> build/lib/sequana 2023-05-13T06:42:10,086 copying sequana/protein.py -> build/lib/sequana 2023-05-13T06:42:10,090 copying sequana/contigs.py -> build/lib/sequana 2023-05-13T06:42:10,095 copying sequana/cigar.py -> build/lib/sequana 2023-05-13T06:42:10,100 copying sequana/phred.py -> build/lib/sequana 2023-05-13T06:42:10,105 copying sequana/coverage.py -> build/lib/sequana 2023-05-13T06:42:10,110 copying sequana/__init__.py -> build/lib/sequana 2023-05-13T06:42:10,114 copying sequana/errors.py -> build/lib/sequana 2023-05-13T06:42:10,118 copying sequana/krona.py -> build/lib/sequana 2023-05-13T06:42:10,124 creating build/lib/sequana/kraken 2023-05-13T06:42:10,126 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2023-05-13T06:42:10,132 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2023-05-13T06:42:10,139 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2023-05-13T06:42:10,144 creating build/lib/sequana/scripts 2023-05-13T06:42:10,146 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2023-05-13T06:42:10,152 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2023-05-13T06:42:10,157 copying sequana/scripts/common.py -> build/lib/sequana/scripts 2023-05-13T06:42:10,161 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2023-05-13T06:42:10,166 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2023-05-13T06:42:10,171 creating build/lib/sequana/plots 2023-05-13T06:42:10,173 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2023-05-13T06:42:10,178 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2023-05-13T06:42:10,182 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2023-05-13T06:42:10,187 creating build/lib/sequana/resources 2023-05-13T06:42:10,189 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2023-05-13T06:42:10,195 creating build/lib/sequana/enrichment 2023-05-13T06:42:10,197 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,202 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,207 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,213 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,218 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,222 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,227 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,231 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,236 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2023-05-13T06:42:10,243 creating build/lib/sequana/viz 2023-05-13T06:42:10,245 copying sequana/viz/core.py -> build/lib/sequana/viz 2023-05-13T06:42:10,249 copying sequana/viz/mds.py -> build/lib/sequana/viz 2023-05-13T06:42:10,253 copying sequana/viz/anova.py -> build/lib/sequana/viz 2023-05-13T06:42:10,257 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2023-05-13T06:42:10,262 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2023-05-13T06:42:10,266 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2023-05-13T06:42:10,272 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2023-05-13T06:42:10,278 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2023-05-13T06:42:10,283 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2023-05-13T06:42:10,287 copying sequana/viz/pca.py -> build/lib/sequana/viz 2023-05-13T06:42:10,292 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2023-05-13T06:42:10,296 copying sequana/viz/venn.py -> build/lib/sequana/viz 2023-05-13T06:42:10,301 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2023-05-13T06:42:10,305 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2023-05-13T06:42:10,309 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2023-05-13T06:42:10,313 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2023-05-13T06:42:10,318 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2023-05-13T06:42:10,321 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2023-05-13T06:42:10,329 creating build/lib/sequana/modules_report 2023-05-13T06:42:10,331 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,336 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,341 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,345 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,350 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,355 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,359 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,363 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,368 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,372 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,377 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,383 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,387 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,392 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,396 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,400 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,405 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,410 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,415 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,421 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,425 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2023-05-13T06:42:10,432 creating build/lib/sequana/multiqc 2023-05-13T06:42:10,434 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,439 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,444 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,448 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,453 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,458 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,462 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,466 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,471 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,476 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,481 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,485 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2023-05-13T06:42:10,491 creating build/lib/sequana/rules 2023-05-13T06:42:10,493 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2023-05-13T06:42:10,498 creating build/lib/sequana/utils 2023-05-13T06:42:10,500 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2023-05-13T06:42:10,505 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2023-05-13T06:42:10,509 copying sequana/utils/config.py -> build/lib/sequana/utils 2023-05-13T06:42:10,513 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2023-05-13T06:42:10,518 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2023-05-13T06:42:10,522 copying sequana/utils/tree.py -> build/lib/sequana/utils 2023-05-13T06:42:10,526 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2023-05-13T06:42:10,533 creating build/lib/sequana/scripts/main 2023-05-13T06:42:10,535 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,540 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,544 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,548 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,554 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,558 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,562 copying sequana/scripts/main/variants_comparison.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,567 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,571 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,576 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,580 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,584 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,589 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,593 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,597 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,601 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,605 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,609 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,613 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,618 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,622 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,626 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,629 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2023-05-13T06:42:10,635 creating build/lib/sequana/resources/js 2023-05-13T06:42:10,636 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2023-05-13T06:42:10,641 creating build/lib/sequana/resources/testing 2023-05-13T06:42:10,643 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2023-05-13T06:42:10,648 creating build/lib/sequana/resources/data 2023-05-13T06:42:10,650 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2023-05-13T06:42:10,655 creating build/lib/sequana/resources/canvas 2023-05-13T06:42:10,658 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2023-05-13T06:42:10,663 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2023-05-13T06:42:10,666 creating build/lib/sequana/resources/templates 2023-05-13T06:42:10,669 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2023-05-13T06:42:10,674 creating build/lib/sequana/resources/snpeff 2023-05-13T06:42:10,676 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2023-05-13T06:42:10,681 creating build/lib/sequana/resources/examples 2023-05-13T06:42:10,682 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2023-05-13T06:42:10,687 creating build/lib/sequana/resources/css 2023-05-13T06:42:10,689 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2023-05-13T06:42:10,693 creating build/lib/sequana/resources/images 2023-05-13T06:42:10,695 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2023-05-13T06:42:10,700 creating build/lib/sequana/resources/doc 2023-05-13T06:42:10,701 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2023-05-13T06:42:10,706 creating build/lib/sequana/resources/doc/rnaseq_0 2023-05-13T06:42:10,708 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2023-05-13T06:42:10,713 creating build/lib/sequana/resources/doc/rnadiff_compare 2023-05-13T06:42:10,714 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2023-05-13T06:42:10,719 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-05-13T06:42:10,721 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-05-13T06:42:10,726 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-05-13T06:42:10,728 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-05-13T06:42:10,733 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-05-13T06:42:10,734 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-05-13T06:42:10,739 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-05-13T06:42:10,741 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-05-13T06:42:10,746 creating build/lib/sequana/rules/SnpEff 2023-05-13T06:42:10,748 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2023-05-13T06:42:10,752 creating build/lib/sequana/rules/Pacbio 2023-05-13T06:42:10,754 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2023-05-13T06:42:10,759 creating build/lib/sequana/rules/codecs 2023-05-13T06:42:10,761 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2023-05-13T06:42:10,765 creating build/lib/sequana/rules/picard-tools 2023-05-13T06:42:10,768 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2023-05-13T06:42:10,773 creating build/lib/sequana/rules/sambamba 2023-05-13T06:42:10,774 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2023-05-13T06:42:10,779 creating build/lib/sequana/rules/idr 2023-05-13T06:42:10,781 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2023-05-13T06:42:10,786 creating build/lib/sequana/rules/deeptools 2023-05-13T06:42:10,788 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2023-05-13T06:42:11,246 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2023-05-13T06:42:11,251 copying sequana/rules/README.rst -> build/lib/sequana/rules 2023-05-13T06:42:11,255 creating build/lib/sequana/rules/bed_to_gff 2023-05-13T06:42:11,258 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2023-05-13T06:42:11,262 creating build/lib/sequana/rules/DupRadar 2023-05-13T06:42:11,264 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2023-05-13T06:42:11,269 creating build/lib/sequana/rules/fastq_screen_report 2023-05-13T06:42:11,271 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2023-05-13T06:42:11,276 creating build/lib/sequana/rules/SARTools 2023-05-13T06:42:11,278 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2023-05-13T06:42:11,283 creating build/lib/sequana/rules/dag 2023-05-13T06:42:11,285 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2023-05-13T06:42:11,290 creating build/lib/sequana/rules/freebayes_vcf_filter 2023-05-13T06:42:11,292 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2023-05-13T06:42:11,296 creating build/lib/sequana/rules/fastp 2023-05-13T06:42:11,298 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2023-05-13T06:42:11,302 creating build/lib/sequana/rules/fastq_screen 2023-05-13T06:42:11,307 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2023-05-13T06:42:11,313 creating build/lib/sequana/rules/rnaseqc 2023-05-13T06:42:11,315 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2023-05-13T06:42:11,320 creating build/lib/sequana/rules/rulegraph 2023-05-13T06:42:11,322 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2023-05-13T06:42:11,326 creating build/lib/sequana/rules/igvtools 2023-05-13T06:42:11,329 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2023-05-13T06:42:11,334 creating build/lib/sequana/rules/copy_multiple_files 2023-05-13T06:42:11,335 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2023-05-13T06:42:11,340 creating build/lib/sequana/rules/indel_realigner 2023-05-13T06:42:11,342 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2023-05-13T06:42:11,346 creating build/lib/sequana/rules/cutadapt 2023-05-13T06:42:11,348 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2023-05-13T06:42:11,353 creating build/lib/sequana/rules/prokka 2023-05-13T06:42:11,355 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2023-05-13T06:42:11,360 creating build/lib/sequana/rules/revcomp_rule 2023-05-13T06:42:11,362 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2023-05-13T06:42:11,366 creating build/lib/sequana/rules/extract_fasta_from_bed 2023-05-13T06:42:11,368 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2023-05-13T06:42:11,373 creating build/lib/sequana/rules/samtools_depth 2023-05-13T06:42:11,375 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2023-05-13T06:42:11,380 creating build/lib/sequana/rules/miRNA_count_dynamic 2023-05-13T06:42:11,382 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2023-05-13T06:42:11,386 creating build/lib/sequana/rules/bamCoverage 2023-05-13T06:42:11,388 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2023-05-13T06:42:11,393 creating build/lib/sequana/rules/summary_pipeline 2023-05-13T06:42:11,395 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2023-05-13T06:42:11,400 creating build/lib/sequana/rules/multiqc2 2023-05-13T06:42:11,402 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2023-05-13T06:42:11,406 creating build/lib/sequana/rules/spades_get_fastq 2023-05-13T06:42:11,408 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2023-05-13T06:42:11,412 creating build/lib/sequana/rules/multiqc 2023-05-13T06:42:11,414 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2023-05-13T06:42:11,419 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-05-13T06:42:11,421 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-05-13T06:42:11,425 creating build/lib/sequana/rules/salmon_mapping 2023-05-13T06:42:11,427 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2023-05-13T06:42:11,432 creating build/lib/sequana/rules/bwa_bam_to_fastq 2023-05-13T06:42:11,434 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2023-05-13T06:42:11,438 creating build/lib/sequana/rules/fastqc 2023-05-13T06:42:11,440 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2023-05-13T06:42:11,445 creating build/lib/sequana/rules/freebayes_bcf_filter 2023-05-13T06:42:11,446 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2023-05-13T06:42:11,451 creating build/lib/sequana/rules/spikes_counting 2023-05-13T06:42:11,453 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2023-05-13T06:42:11,458 creating build/lib/sequana/rules/format_contigs 2023-05-13T06:42:11,460 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2023-05-13T06:42:11,464 creating build/lib/sequana/rules/salmon_index 2023-05-13T06:42:11,466 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2023-05-13T06:42:11,471 creating build/lib/sequana/rules/freebayes 2023-05-13T06:42:11,473 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2023-05-13T06:42:11,478 creating build/lib/sequana/rules/pacbio_quality 2023-05-13T06:42:11,480 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2023-05-13T06:42:11,484 creating build/lib/sequana/rules/bam_quality_filter 2023-05-13T06:42:11,486 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2023-05-13T06:42:11,491 creating build/lib/sequana/rules/samtools_sort 2023-05-13T06:42:11,493 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2023-05-13T06:42:11,498 creating build/lib/sequana/rules/fastq_sampling 2023-05-13T06:42:11,500 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2023-05-13T06:42:11,505 creating build/lib/sequana/rules/kraken 2023-05-13T06:42:11,506 creating build/lib/sequana/rules/kraken/1.0 2023-05-13T06:42:11,508 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2023-05-13T06:42:11,513 creating build/lib/sequana/rules/kraken/2.0 2023-05-13T06:42:11,515 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2023-05-13T06:42:11,520 creating build/lib/sequana/rules/kraken/1.1 2023-05-13T06:42:11,522 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2023-05-13T06:42:11,528 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-05-13T06:42:11,530 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-05-13T06:42:11,535 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-05-13T06:42:11,537 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-05-13T06:42:11,541 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2023-05-13T06:42:11,543 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2023-05-13T06:42:11,548 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-05-13T06:42:11,550 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-05-13T06:42:11,555 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2023-05-13T06:42:11,557 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2023-05-13T06:42:11,562 creating build/lib/sequana/rules/codecs/fastq_to_gz 2023-05-13T06:42:11,563 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2023-05-13T06:42:11,568 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2023-05-13T06:42:11,570 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2023-05-13T06:42:11,575 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2023-05-13T06:42:11,577 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2023-05-13T06:42:11,582 creating build/lib/sequana/rules/codecs/gz_to_fastq 2023-05-13T06:42:11,584 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2023-05-13T06:42:11,589 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-05-13T06:42:11,591 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-05-13T06:42:11,595 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-05-13T06:42:11,597 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-05-13T06:42:11,602 creating build/lib/sequana/rules/multiqc/2.0 2023-05-13T06:42:11,604 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2023-05-13T06:42:11,609 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-05-13T06:42:11,611 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-05-13T06:42:11,616 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-05-13T06:42:11,618 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-05-13T06:42:11,623 creating build/lib/sequana/rules/picard-tools/add_read_group 2023-05-13T06:42:11,625 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2023-05-13T06:42:11,630 creating build/lib/sequana/rules/picard-tools/reorderSam 2023-05-13T06:42:11,632 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2023-05-13T06:42:11,636 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2023-05-13T06:42:11,638 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2023-05-13T06:42:11,643 creating build/lib/sequana/rules/sambamba/sambamba_filter 2023-05-13T06:42:11,645 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2023-05-13T06:42:11,650 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2023-05-13T06:42:11,652 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2023-05-13T06:42:11,657 creating build/lib/sequana/rules/idr/stats_peakCalling 2023-05-13T06:42:11,659 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2023-05-13T06:42:11,663 creating build/lib/sequana/rules/idr/preIDR_dynamic 2023-05-13T06:42:11,665 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2023-05-13T06:42:11,671 creating build/lib/sequana/rules/idr/compute_idr 2023-05-13T06:42:11,673 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2023-05-13T06:42:11,680 creating build/lib/sequana/rules/idr/select_peaks 2023-05-13T06:42:11,682 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2023-05-13T06:42:11,687 creating build/lib/sequana/rules/idr/intersectionApproach 2023-05-13T06:42:11,689 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2023-05-13T06:42:11,694 creating build/lib/sequana/rules/idr/metrics_peaks 2023-05-13T06:42:11,696 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2023-05-13T06:42:11,702 creating build/lib/sequana/rules/idr/union_peaks 2023-05-13T06:42:11,704 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2023-05-13T06:42:11,709 creating build/lib/sequana/rules/deeptools/multiBamSummary 2023-05-13T06:42:11,711 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2023-05-13T06:42:11,716 creating build/lib/sequana/rules/deeptools/plotCorrelation 2023-05-13T06:42:11,719 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2023-05-13T06:42:11,724 creating build/lib/sequana/rules/deeptools/plotCoverage 2023-05-13T06:42:11,726 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2023-05-13T06:42:11,732 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-05-13T06:42:11,733 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-05-13T06:42:11,738 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-05-13T06:42:11,740 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-05-13T06:42:11,742 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-05-13T06:42:11,747 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-05-13T06:42:11,755 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-05-13T06:42:11,757 creating build/lib/sequana/rules/SnpEff/snpeff 2023-05-13T06:42:11,758 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-05-13T06:42:11,759 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-05-13T06:42:11,763 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-05-13T06:42:11,765 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-05-13T06:42:11,770 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,774 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,779 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,799 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,808 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,819 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,825 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,830 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,836 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,846 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,851 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,862 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,869 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2023-05-13T06:42:11,886 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,891 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,895 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,900 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,904 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,942 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,946 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,951 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,955 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,960 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,964 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,970 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,974 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2023-05-13T06:42:11,979 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:12,002 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2023-05-13T06:42:12,032 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2023-05-13T06:42:12,037 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2023-05-13T06:42:12,042 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2023-05-13T06:42:12,049 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2023-05-13T06:42:12,054 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2023-05-13T06:42:12,061 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2023-05-13T06:42:12,068 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2023-05-13T06:42:12,096 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2023-05-13T06:42:12,116 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2023-05-13T06:42:12,121 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2023-05-13T06:42:12,132 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2023-05-13T06:42:12,146 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2023-05-13T06:42:12,150 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2023-05-13T06:42:12,156 copying sequana/resources/templates/vcf_diff.html -> build/lib/sequana/resources/templates 2023-05-13T06:42:12,161 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2023-05-13T06:42:12,165 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2023-05-13T06:42:12,170 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2023-05-13T06:42:12,176 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2023-05-13T06:42:12,181 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2023-05-13T06:42:12,187 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2023-05-13T06:42:12,193 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2023-05-13T06:42:12,199 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2023-05-13T06:42:12,204 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2023-05-13T06:42:12,209 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2023-05-13T06:42:12,213 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2023-05-13T06:42:12,228 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2023-05-13T06:42:12,233 copying sequana/resources/images/logo_256x256.png -> build/lib/sequana/resources/images 2023-05-13T06:42:12,243 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2023-05-13T06:42:12,247 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2023-05-13T06:42:12,394 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-13T06:42:12,394 !! 2023-05-13T06:42:12,396 ******************************************************************************** 2023-05-13T06:42:12,396 Please avoid running ``setup.py`` directly. 2023-05-13T06:42:12,397 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-13T06:42:12,397 other standards-based tools. 2023-05-13T06:42:12,398 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-13T06:42:12,398 ******************************************************************************** 2023-05-13T06:42:12,399 !! 2023-05-13T06:42:12,400 self.initialize_options() 2023-05-13T06:42:12,466 installing to build/bdist.linux-armv7l/wheel 2023-05-13T06:42:12,467 running install 2023-05-13T06:42:12,530 running install_lib 2023-05-13T06:42:12,606 creating build/bdist.linux-armv7l 2023-05-13T06:42:12,607 creating build/bdist.linux-armv7l/wheel 2023-05-13T06:42:12,613 creating build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,615 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,624 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,629 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,633 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,639 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,643 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,647 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,652 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,655 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,660 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,669 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2023-05-13T06:42:12,671 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-05-13T06:42:12,676 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-05-13T06:42:12,683 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-05-13T06:42:12,686 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,691 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,695 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,699 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,704 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,708 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,712 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,718 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2023-05-13T06:42:12,719 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-05-13T06:42:12,724 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-05-13T06:42:12,729 copying build/lib/sequana/scripts/common.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-05-13T06:42:12,734 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,736 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,740 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,744 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,748 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,752 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,756 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,760 copying build/lib/sequana/scripts/main/variants_comparison.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,765 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,768 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,773 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,776 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,781 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,785 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,789 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,792 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,796 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,800 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,804 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,808 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,812 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,816 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,821 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,824 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-05-13T06:42:12,828 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-05-13T06:42:12,834 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-05-13T06:42:12,837 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,843 creating build/bdist.linux-armv7l/wheel/sequana/plots 2023-05-13T06:42:12,845 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-05-13T06:42:12,850 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-05-13T06:42:12,854 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-05-13T06:42:12,857 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,862 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,866 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,871 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,876 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,882 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:12,888 creating build/bdist.linux-armv7l/wheel/sequana/resources 2023-05-13T06:42:12,891 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:12,893 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:12,898 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:12,901 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:12,919 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:12,928 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,149 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,154 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,159 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,165 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,174 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,177 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,185 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,192 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,208 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-05-13T06:42:13,213 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,214 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,219 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,222 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,260 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,264 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,268 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,271 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,275 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,279 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,284 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,288 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,292 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,295 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,317 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,340 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,344 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,348 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,352 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,357 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-05-13T06:42:13,367 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,379 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,390 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,394 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,399 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,405 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,433 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,439 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,450 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,463 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-05-13T06:42:13,468 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-05-13T06:42:13,470 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-05-13T06:42:13,475 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-05-13T06:42:13,481 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-05-13T06:42:13,482 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-05-13T06:42:13,486 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-05-13T06:42:13,491 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-05-13T06:42:13,496 copying build/lib/sequana/resources/templates/vcf_diff.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-05-13T06:42:13,500 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-05-13T06:42:13,504 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-05-13T06:42:13,509 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-05-13T06:42:13,511 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-05-13T06:42:13,516 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-05-13T06:42:13,520 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-05-13T06:42:13,522 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-05-13T06:42:13,528 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-05-13T06:42:13,532 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-05-13T06:42:13,537 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-05-13T06:42:13,541 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-05-13T06:42:13,543 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-05-13T06:42:13,548 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-05-13T06:42:13,553 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-05-13T06:42:13,558 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-05-13T06:42:13,562 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-05-13T06:42:13,574 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-05-13T06:42:13,579 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-05-13T06:42:13,581 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-05-13T06:42:13,585 copying build/lib/sequana/resources/images/logo_256x256.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-05-13T06:42:13,595 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-05-13T06:42:13,599 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-05-13T06:42:13,606 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-05-13T06:42:13,611 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-05-13T06:42:13,614 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-05-13T06:42:13,618 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-05-13T06:42:13,621 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-05-13T06:42:13,623 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-05-13T06:42:13,628 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-05-13T06:42:13,630 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-05-13T06:42:13,636 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-05-13T06:42:13,638 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-05-13T06:42:13,642 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-05-13T06:42:13,645 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-05-13T06:42:13,649 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-05-13T06:42:13,651 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-05-13T06:42:13,655 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-05-13T06:42:13,659 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2023-05-13T06:42:13,664 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,666 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,670 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,676 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,682 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,687 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,691 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,696 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,700 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,705 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-05-13T06:42:13,710 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,715 creating build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,717 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,722 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,726 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,730 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,735 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,740 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,744 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,751 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,756 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,760 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,765 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,770 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,774 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,778 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,782 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,786 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,790 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,794 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-05-13T06:42:13,810 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,811 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,822 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,822 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,828 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,830 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,837 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,840 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,845 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,858 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,863 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,867 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,873 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,879 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,883 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,888 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,893 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,897 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,902 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,907 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,918 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,925 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,929 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-05-13T06:42:13,933 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,937 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,941 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,946 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,951 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,955 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,961 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,965 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,971 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,975 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,980 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,985 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:13,991 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:13,993 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:13,998 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,002 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,007 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,012 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,017 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,021 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,025 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,029 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,033 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,037 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,041 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,046 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-05-13T06:42:14,050 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,055 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,059 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,063 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,068 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,072 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,077 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,084 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,091 creating build/bdist.linux-armv7l/wheel/sequana/rules 2023-05-13T06:42:14,094 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-05-13T06:42:14,096 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-05-13T06:42:14,102 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-05-13T06:42:14,104 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-05-13T06:42:14,110 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-05-13T06:42:14,112 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-05-13T06:42:14,118 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2023-05-13T06:42:14,120 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2023-05-13T06:42:14,126 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2023-05-13T06:42:14,128 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2023-05-13T06:42:14,133 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2023-05-13T06:42:14,136 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-05-13T06:42:14,138 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-05-13T06:42:14,143 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-05-13T06:42:14,145 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-05-13T06:42:14,151 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-05-13T06:42:14,153 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-05-13T06:42:14,159 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-05-13T06:42:14,162 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-05-13T06:42:14,165 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-05-13T06:42:14,167 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-05-13T06:42:14,173 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-05-13T06:42:14,174 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-05-13T06:42:14,180 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2023-05-13T06:42:14,183 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-05-13T06:42:14,185 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-05-13T06:42:14,190 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-05-13T06:42:14,192 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-05-13T06:42:14,197 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-05-13T06:42:14,199 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-05-13T06:42:14,203 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-05-13T06:42:14,208 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2023-05-13T06:42:14,210 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2023-05-13T06:42:14,215 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2023-05-13T06:42:14,217 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2023-05-13T06:42:14,222 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-05-13T06:42:14,224 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-05-13T06:42:14,230 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-05-13T06:42:14,232 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-05-13T06:42:14,236 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-05-13T06:42:14,238 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-05-13T06:42:14,243 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2023-05-13T06:42:14,245 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2023-05-13T06:42:14,251 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-05-13T06:42:14,252 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-05-13T06:42:14,258 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2023-05-13T06:42:14,260 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2023-05-13T06:42:14,265 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-05-13T06:42:14,267 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-05-13T06:42:14,273 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-05-13T06:42:14,276 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-05-13T06:42:14,278 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-05-13T06:42:14,283 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-05-13T06:42:14,285 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-05-13T06:42:14,298 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-05-13T06:42:14,300 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-05-13T06:42:14,305 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-05-13T06:42:14,307 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-05-13T06:42:14,312 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-05-13T06:42:14,314 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-05-13T06:42:14,320 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-05-13T06:42:14,321 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-05-13T06:42:14,327 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-05-13T06:42:14,329 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-05-13T06:42:14,334 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-05-13T06:42:14,336 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-05-13T06:42:14,342 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-05-13T06:42:14,343 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-05-13T06:42:14,351 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-05-13T06:42:14,361 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-05-13T06:42:14,365 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-05-13T06:42:14,366 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-05-13T06:42:14,366 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-05-13T06:42:14,370 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-05-13T06:42:14,372 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-05-13T06:42:14,376 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-05-13T06:42:14,381 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-05-13T06:42:14,383 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-05-13T06:42:14,388 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-05-13T06:42:14,390 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-05-13T06:42:14,395 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2023-05-13T06:42:14,397 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2023-05-13T06:42:14,402 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-05-13T06:42:14,404 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-05-13T06:42:14,410 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-05-13T06:42:14,412 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-05-13T06:42:14,417 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-05-13T06:42:14,419 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-05-13T06:42:14,424 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2023-05-13T06:42:14,426 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2023-05-13T06:42:14,431 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-05-13T06:42:14,433 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-05-13T06:42:14,438 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2023-05-13T06:42:14,439 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2023-05-13T06:42:14,445 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2023-05-13T06:42:14,447 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2023-05-13T06:42:14,452 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-05-13T06:42:14,454 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-05-13T06:42:14,459 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-05-13T06:42:14,461 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-05-13T06:42:14,467 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-05-13T06:42:14,470 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-05-13T06:42:14,472 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-05-13T06:42:14,478 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-05-13T06:42:14,480 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-05-13T06:42:14,485 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-05-13T06:42:14,488 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-05-13T06:42:14,493 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-05-13T06:42:14,495 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-05-13T06:42:14,500 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-05-13T06:42:14,502 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-05-13T06:42:14,507 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-05-13T06:42:14,512 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-05-13T06:42:14,514 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-05-13T06:42:14,523 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2023-05-13T06:42:14,523 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2023-05-13T06:42:14,528 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-05-13T06:42:14,530 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-05-13T06:42:14,535 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-05-13T06:42:14,537 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-05-13T06:42:14,542 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-05-13T06:42:14,544 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-05-13T06:42:14,549 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-05-13T06:42:14,551 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-05-13T06:42:14,556 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2023-05-13T06:42:14,559 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2023-05-13T06:42:14,564 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-05-13T06:42:14,566 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-05-13T06:42:14,571 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2023-05-13T06:42:14,574 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2023-05-13T06:42:14,576 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2023-05-13T06:42:14,582 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2023-05-13T06:42:14,584 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2023-05-13T06:42:14,588 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2023-05-13T06:42:14,592 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-05-13T06:42:14,594 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-05-13T06:42:14,600 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-05-13T06:42:14,603 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-05-13T06:42:14,605 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-05-13T06:42:14,610 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-05-13T06:42:14,612 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-05-13T06:42:14,619 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-05-13T06:42:14,620 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-05-13T06:42:14,626 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-05-13T06:42:14,628 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-05-13T06:42:14,633 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-05-13T06:42:14,635 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-05-13T06:42:14,640 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-05-13T06:42:14,642 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-05-13T06:42:14,648 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-05-13T06:42:14,650 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-05-13T06:42:14,655 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-05-13T06:42:14,659 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-05-13T06:42:14,661 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-05-13T06:42:14,667 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-05-13T06:42:14,669 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-05-13T06:42:14,673 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-05-13T06:42:14,678 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-05-13T06:42:14,681 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-05-13T06:42:14,683 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-05-13T06:42:14,688 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-05-13T06:42:14,690 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-05-13T06:42:14,696 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-05-13T06:42:14,698 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-05-13T06:42:14,703 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-05-13T06:42:14,705 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-05-13T06:42:14,709 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-05-13T06:42:14,712 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,717 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,722 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,729 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,735 creating build/bdist.linux-armv7l/wheel/sequana/utils 2023-05-13T06:42:14,737 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-05-13T06:42:14,741 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-05-13T06:42:14,745 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-05-13T06:42:14,749 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-05-13T06:42:14,754 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-05-13T06:42:14,758 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-05-13T06:42:14,763 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-05-13T06:42:14,766 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,772 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,778 copying build/lib/sequana/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,782 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,786 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,791 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,795 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,803 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,822 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,827 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,832 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,838 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,843 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,849 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,853 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,858 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2023-05-13T06:42:14,862 running install_egg_info 2023-05-13T06:42:15,039 running egg_info 2023-05-13T06:42:15,107 writing sequana.egg-info/PKG-INFO 2023-05-13T06:42:15,113 writing dependency_links to sequana.egg-info/dependency_links.txt 2023-05-13T06:42:15,120 writing entry points to sequana.egg-info/entry_points.txt 2023-05-13T06:42:15,124 writing requirements to sequana.egg-info/requires.txt 2023-05-13T06:42:15,128 writing top-level names to sequana.egg-info/top_level.txt 2023-05-13T06:42:15,659 reading manifest file 'sequana.egg-info/SOURCES.txt' 2023-05-13T06:42:15,688 reading manifest template 'MANIFEST.in' 2023-05-13T06:42:15,696 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-05-13T06:42:15,701 warning: no previously-included files matching '*pyc' found under directory '*' 2023-05-13T06:42:16,866 warning: no files found matching 'test/requirements*txt' 2023-05-13T06:42:16,871 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-05-13T06:42:16,875 warning: no previously-included files matching '*' found under directory 'test' 2023-05-13T06:42:16,878 warning: no previously-included files matching '*' found under directory 'doc' 2023-05-13T06:42:16,882 warning: no previously-included files found matching 'sequana/rm2.py' 2023-05-13T06:42:16,882 adding license file 'LICENSE' 2023-05-13T06:42:16,946 writing manifest file 'sequana.egg-info/SOURCES.txt' 2023-05-13T06:42:16,950 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.15.1-py3.7.egg-info 2023-05-13T06:42:16,982 running install_scripts 2023-05-13T06:42:17,115 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-05-13T06:42:17,125 creating build/bdist.linux-armv7l/wheel/sequana-0.15.1.dist-info/WHEEL 2023-05-13T06:42:17,130 creating '/tmp/pip-wheel-w5dabnjt/sequana-0.15.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-13T06:42:17,136 adding 'sequana/__init__.py' 2023-05-13T06:42:17,141 adding 'sequana/assembly.py' 2023-05-13T06:42:17,160 adding 'sequana/bamtools.py' 2023-05-13T06:42:17,165 adding 'sequana/bed.py' 2023-05-13T06:42:17,189 adding 'sequana/bedtools.py' 2023-05-13T06:42:17,194 adding 'sequana/canu_scanner.py' 2023-05-13T06:42:17,199 adding 'sequana/cigar.py' 2023-05-13T06:42:17,202 adding 'sequana/cnv.py' 2023-05-13T06:42:17,205 adding 'sequana/codon.py' 2023-05-13T06:42:17,211 adding 'sequana/compare.py' 2023-05-13T06:42:17,215 adding 'sequana/contigs.py' 2023-05-13T06:42:17,220 adding 'sequana/coverage.py' 2023-05-13T06:42:17,223 adding 'sequana/cpg_islands.py' 2023-05-13T06:42:17,226 adding 'sequana/criteria.py' 2023-05-13T06:42:17,233 adding 'sequana/databases.py' 2023-05-13T06:42:17,236 adding 'sequana/datatools.py' 2023-05-13T06:42:17,240 adding 'sequana/demultiplex.py' 2023-05-13T06:42:17,243 adding 'sequana/errors.py' 2023-05-13T06:42:17,248 adding 'sequana/fasta.py' 2023-05-13T06:42:17,253 adding 'sequana/fasta_gff_correction.py' 2023-05-13T06:42:17,266 adding 'sequana/fastq.py' 2023-05-13T06:42:17,270 adding 'sequana/fastqc.py' 2023-05-13T06:42:17,276 adding 'sequana/featurecounts.py' 2023-05-13T06:42:17,280 adding 'sequana/find_motif.py' 2023-05-13T06:42:17,285 adding 'sequana/freebayes_bcf_filter.py' 2023-05-13T06:42:17,290 adding 'sequana/freebayes_vcf_filter.py' 2023-05-13T06:42:17,293 adding 'sequana/frip.py' 2023-05-13T06:42:17,296 adding 'sequana/genbank.py' 2023-05-13T06:42:17,304 adding 'sequana/gff3.py' 2023-05-13T06:42:17,313 adding 'sequana/gtf_fixer.py' 2023-05-13T06:42:17,316 adding 'sequana/homer.py' 2023-05-13T06:42:17,320 adding 'sequana/idr.py' 2023-05-13T06:42:17,324 adding 'sequana/iem.py' 2023-05-13T06:42:17,332 adding 'sequana/isoseq.py' 2023-05-13T06:42:17,336 adding 'sequana/itol.py' 2023-05-13T06:42:17,339 adding 'sequana/iuapc.py' 2023-05-13T06:42:17,342 adding 'sequana/kegg.py' 2023-05-13T06:42:17,345 adding 'sequana/kmer.py' 2023-05-13T06:42:17,348 adding 'sequana/krona.py' 2023-05-13T06:42:17,351 adding 'sequana/lazy.py' 2023-05-13T06:42:17,354 adding 'sequana/lazyimports.py' 2023-05-13T06:42:17,359 adding 'sequana/macs3.py' 2023-05-13T06:42:17,362 adding 'sequana/mgi.py' 2023-05-13T06:42:17,365 adding 'sequana/mh.py' 2023-05-13T06:42:17,368 adding 'sequana/misc.py' 2023-05-13T06:42:17,373 adding 'sequana/mixture.py' 2023-05-13T06:42:17,385 adding 'sequana/pacbio.py' 2023-05-13T06:42:17,390 adding 'sequana/pacbio_amplicon.py' 2023-05-13T06:42:17,396 adding 'sequana/phantom.py' 2023-05-13T06:42:17,400 adding 'sequana/phred.py' 2023-05-13T06:42:17,403 adding 'sequana/protein.py' 2023-05-13T06:42:17,408 adding 'sequana/ribodesigner.py' 2023-05-13T06:42:17,423 adding 'sequana/rnadiff.py' 2023-05-13T06:42:17,428 adding 'sequana/running_median.py' 2023-05-13T06:42:17,432 adding 'sequana/salmon.py' 2023-05-13T06:42:17,442 adding 'sequana/sequence.py' 2023-05-13T06:42:17,445 adding 'sequana/sniffer.py' 2023-05-13T06:42:17,450 adding 'sequana/snpeff.py' 2023-05-13T06:42:17,454 adding 'sequana/stats.py' 2023-05-13T06:42:17,457 adding 'sequana/summary.py' 2023-05-13T06:42:17,463 adding 'sequana/taxonomy.py' 2023-05-13T06:42:17,470 adding 'sequana/tools.py' 2023-05-13T06:42:17,474 adding 'sequana/trf.py' 2023-05-13T06:42:17,479 adding 'sequana/vcf_filter.py' 2023-05-13T06:42:17,484 adding 'sequana/vcftools.py' 2023-05-13T06:42:17,487 adding 'sequana/vst.py' 2023-05-13T06:42:17,490 adding 'sequana/enrichment/__init__.py' 2023-05-13T06:42:17,493 adding 'sequana/enrichment/gsea.py' 2023-05-13T06:42:17,501 adding 'sequana/enrichment/kegg.py' 2023-05-13T06:42:17,504 adding 'sequana/enrichment/mart.py' 2023-05-13T06:42:17,507 adding 'sequana/enrichment/ontology.py' 2023-05-13T06:42:17,513 adding 'sequana/enrichment/panther.py' 2023-05-13T06:42:17,519 adding 'sequana/enrichment/plot_go_terms.py' 2023-05-13T06:42:17,523 adding 'sequana/enrichment/quickgo.py' 2023-05-13T06:42:17,528 adding 'sequana/enrichment/uniprot_enrichment.py' 2023-05-13T06:42:17,531 adding 'sequana/kraken/__init__.py' 2023-05-13T06:42:17,546 adding 'sequana/kraken/analysis.py' 2023-05-13T06:42:17,551 adding 'sequana/kraken/multikraken.py' 2023-05-13T06:42:17,554 adding 'sequana/modules_report/__init__.py' 2023-05-13T06:42:17,557 adding 'sequana/modules_report/bamqc.py' 2023-05-13T06:42:17,562 adding 'sequana/modules_report/base_module.py' 2023-05-13T06:42:17,565 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2023-05-13T06:42:17,573 adding 'sequana/modules_report/coverage.py' 2023-05-13T06:42:17,580 adding 'sequana/modules_report/cutadapt.py' 2023-05-13T06:42:17,584 adding 'sequana/modules_report/fastq_stats.py' 2023-05-13T06:42:17,587 adding 'sequana/modules_report/fastqc.py' 2023-05-13T06:42:17,590 adding 'sequana/modules_report/joint_calling.py' 2023-05-13T06:42:17,594 adding 'sequana/modules_report/kegg_enrichment.py' 2023-05-13T06:42:17,599 adding 'sequana/modules_report/kraken.py' 2023-05-13T06:42:17,604 adding 'sequana/modules_report/multi_summary.py' 2023-05-13T06:42:17,608 adding 'sequana/modules_report/pacbio_input_bam.py' 2023-05-13T06:42:17,612 adding 'sequana/modules_report/panther_enrichment.py' 2023-05-13T06:42:17,616 adding 'sequana/modules_report/phix.py' 2023-05-13T06:42:17,619 adding 'sequana/modules_report/quast.py' 2023-05-13T06:42:17,625 adding 'sequana/modules_report/rnadiff.py' 2023-05-13T06:42:17,630 adding 'sequana/modules_report/summary.py' 2023-05-13T06:42:17,633 adding 'sequana/modules_report/trf.py' 2023-05-13T06:42:17,637 adding 'sequana/modules_report/uniprot_enrichment.py' 2023-05-13T06:42:17,641 adding 'sequana/modules_report/variant_calling.py' 2023-05-13T06:42:17,645 adding 'sequana/multiqc/__init__.py' 2023-05-13T06:42:17,649 adding 'sequana/multiqc/bamtools_stats.py' 2023-05-13T06:42:17,652 adding 'sequana/multiqc/config.py' 2023-05-13T06:42:17,656 adding 'sequana/multiqc/coverage.py' 2023-05-13T06:42:17,660 adding 'sequana/multiqc/isoseq.py' 2023-05-13T06:42:17,663 adding 'sequana/multiqc/isoseq_qc.py' 2023-05-13T06:42:17,668 adding 'sequana/multiqc/kraken.py' 2023-05-13T06:42:17,671 adding 'sequana/multiqc/laa.py' 2023-05-13T06:42:17,675 adding 'sequana/multiqc/multiqc_config.yaml' 2023-05-13T06:42:17,678 adding 'sequana/multiqc/pacbio_amplicon.py' 2023-05-13T06:42:17,682 adding 'sequana/multiqc/pacbio_qc.py' 2023-05-13T06:42:17,685 adding 'sequana/multiqc/plots.py' 2023-05-13T06:42:17,689 adding 'sequana/multiqc/quality_control.py' 2023-05-13T06:42:17,692 adding 'sequana/plots/__init__.py' 2023-05-13T06:42:17,696 adding 'sequana/plots/canvasjs_base.py' 2023-05-13T06:42:17,700 adding 'sequana/plots/canvasjs_linegraph.py' 2023-05-13T06:42:17,703 adding 'sequana/resources/__init__.py' 2023-05-13T06:42:17,706 adding 'sequana/resources/canvas/__init__.py' 2023-05-13T06:42:17,709 adding 'sequana/resources/canvas/bar.py' 2023-05-13T06:42:17,713 adding 'sequana/resources/css/__init__.py' 2023-05-13T06:42:17,738 adding 'sequana/resources/css/bootstrap.min.css' 2023-05-13T06:42:17,743 adding 'sequana/resources/css/buttons.dataTables.min.css' 2023-05-13T06:42:17,748 adding 'sequana/resources/css/jquery.dataTables.min.css' 2023-05-13T06:42:17,751 adding 'sequana/resources/css/jquery.dropdown.min.css' 2023-05-13T06:42:17,754 adding 'sequana/resources/css/report.css' 2023-05-13T06:42:17,792 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2023-05-13T06:42:17,831 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2023-05-13T06:42:17,836 adding 'sequana/resources/data/README.rst' 2023-05-13T06:42:17,839 adding 'sequana/resources/data/__init__.py' 2023-05-13T06:42:17,992 adding 'sequana/resources/data/kegg.csv' 2023-05-13T06:42:18,020 adding 'sequana/resources/data/measles.fa' 2023-05-13T06:42:18,024 adding 'sequana/resources/data/panther.csv' 2023-05-13T06:42:18,031 adding 'sequana/resources/data/phiX174.fa' 2023-05-13T06:42:18,185 adding 'sequana/resources/data/virus.bed' 2023-05-13T06:42:18,194 adding 'sequana/resources/doc/__init__.py' 2023-05-13T06:42:18,198 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2023-05-13T06:42:18,201 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2023-05-13T06:42:18,205 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2023-05-13T06:42:18,208 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2023-05-13T06:42:18,211 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2023-05-13T06:42:18,215 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2023-05-13T06:42:18,218 adding 'sequana/resources/examples/README.rst' 2023-05-13T06:42:18,220 adding 'sequana/resources/examples/__init__.py' 2023-05-13T06:42:18,226 adding 'sequana/resources/examples/test.fastq.gz' 2023-05-13T06:42:18,230 adding 'sequana/resources/examples/test_kraken.out' 2023-05-13T06:42:18,243 adding 'sequana/resources/images/Institut_Pasteur.png' 2023-05-13T06:42:18,247 adding 'sequana/resources/images/__init__.py' 2023-05-13T06:42:18,270 adding 'sequana/resources/images/logo_256x256.png' 2023-05-13T06:42:18,275 adding 'sequana/resources/images/no_data.jpg' 2023-05-13T06:42:18,279 adding 'sequana/resources/images/no_data.png' 2023-05-13T06:42:18,282 adding 'sequana/resources/js/__init__.py' 2023-05-13T06:42:18,293 adding 'sequana/resources/js/bootstrap.min.js' 2023-05-13T06:42:18,301 adding 'sequana/resources/js/buttons.html5.min.js' 2023-05-13T06:42:18,304 adding 'sequana/resources/js/buttons.print.min.js' 2023-05-13T06:42:18,360 adding 'sequana/resources/js/canvasjs.min.js' 2023-05-13T06:42:18,371 adding 'sequana/resources/js/dataTables.buttons.min.js' 2023-05-13T06:42:18,476 adding 'sequana/resources/js/jquery-2.1.1.js' 2023-05-13T06:42:18,512 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2023-05-13T06:42:18,545 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2023-05-13T06:42:18,578 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2023-05-13T06:42:18,613 adding 'sequana/resources/js/jquery.dataTables.min.js' 2023-05-13T06:42:18,618 adding 'sequana/resources/js/jquery.dropdown.min.js' 2023-05-13T06:42:18,621 adding 'sequana/resources/js/jquery.tocPlugin.js' 2023-05-13T06:42:18,626 adding 'sequana/resources/js/papaparse.min.js' 2023-05-13T06:42:18,630 adding 'sequana/resources/snpeff/__init__.py' 2023-05-13T06:42:18,634 adding 'sequana/resources/snpeff/snpEff.config' 2023-05-13T06:42:18,638 adding 'sequana/resources/templates/__init__.py' 2023-05-13T06:42:18,641 adding 'sequana/resources/templates/base.html' 2023-05-13T06:42:18,644 adding 'sequana/resources/templates/joint_calling.html' 2023-05-13T06:42:18,648 adding 'sequana/resources/templates/rnadiff_light_template.R' 2023-05-13T06:42:18,651 adding 'sequana/resources/templates/standard.html' 2023-05-13T06:42:18,655 adding 'sequana/resources/templates/vcf_diff.html' 2023-05-13T06:42:18,659 adding 'sequana/resources/testing/README.rst' 2023-05-13T06:42:18,662 adding 'sequana/resources/testing/__init__.py' 2023-05-13T06:42:18,666 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2023-05-13T06:42:18,686 adding 'sequana/resources/testing/test.fasta' 2023-05-13T06:42:18,718 adding 'sequana/resources/testing/test_blast_ebi.xml' 2023-05-13T06:42:18,729 adding 'sequana/resources/testing/test_blast_local.xml' 2023-05-13T06:42:18,812 adding 'sequana/resources/testing/test_coverage.csv' 2023-05-13T06:42:18,821 adding 'sequana/resources/testing/test_dag.ann.dot' 2023-05-13T06:42:18,824 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2023-05-13T06:42:18,826 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2023-05-13T06:42:18,829 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2023-05-13T06:42:18,832 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2023-05-13T06:42:18,835 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2023-05-13T06:42:18,838 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2023-05-13T06:42:18,840 adding 'sequana/resources/testing/test_index_mapper.csv' 2023-05-13T06:42:18,843 adding 'sequana/resources/testing/test_kraken.out.summary' 2023-05-13T06:42:18,846 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2023-05-13T06:42:19,434 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2023-05-13T06:42:19,452 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2023-05-13T06:42:19,456 adding 'sequana/rules/README.rst' 2023-05-13T06:42:19,460 adding 'sequana/rules/__init__.py' 2023-05-13T06:42:19,464 adding 'sequana/rules/DupRadar/DupRadar.rules' 2023-05-13T06:42:19,469 adding 'sequana/rules/Pacbio/__init__.py' 2023-05-13T06:42:19,474 adding 'sequana/rules/SARTools/SARTools.rules' 2023-05-13T06:42:19,478 adding 'sequana/rules/SnpEff/__init__.py' 2023-05-13T06:42:19,483 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2023-05-13T06:42:19,488 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2023-05-13T06:42:19,494 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2023-05-13T06:42:19,498 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2023-05-13T06:42:19,503 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2023-05-13T06:42:19,508 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2023-05-13T06:42:19,512 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2023-05-13T06:42:19,517 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2023-05-13T06:42:19,521 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2023-05-13T06:42:19,525 adding 'sequana/rules/codecs/__init__.py' 2023-05-13T06:42:19,529 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2023-05-13T06:42:19,533 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2023-05-13T06:42:19,536 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2023-05-13T06:42:19,540 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2023-05-13T06:42:19,544 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2023-05-13T06:42:19,548 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2023-05-13T06:42:19,552 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2023-05-13T06:42:19,556 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2023-05-13T06:42:19,559 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2023-05-13T06:42:19,563 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2023-05-13T06:42:19,567 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2023-05-13T06:42:19,571 adding 'sequana/rules/cutadapt/cutadapt.rules' 2023-05-13T06:42:19,575 adding 'sequana/rules/dag/dag.rules' 2023-05-13T06:42:19,579 adding 'sequana/rules/deeptools/__init__.py' 2023-05-13T06:42:19,583 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2023-05-13T06:42:19,587 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2023-05-13T06:42:19,590 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2023-05-13T06:42:19,594 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2023-05-13T06:42:19,598 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2023-05-13T06:42:19,602 adding 'sequana/rules/fastp/fastp.rules' 2023-05-13T06:42:19,606 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2023-05-13T06:42:19,610 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2023-05-13T06:42:19,614 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2023-05-13T06:42:19,618 adding 'sequana/rules/fastqc/fastqc.rules' 2023-05-13T06:42:19,622 adding 'sequana/rules/format_contigs/format_contigs.rules' 2023-05-13T06:42:19,626 adding 'sequana/rules/freebayes/freebayes.rules' 2023-05-13T06:42:19,630 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2023-05-13T06:42:19,634 adding 'sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2023-05-13T06:42:19,638 adding 'sequana/rules/idr/__init__.py' 2023-05-13T06:42:19,642 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2023-05-13T06:42:19,646 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2023-05-13T06:42:19,650 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2023-05-13T06:42:19,655 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2023-05-13T06:42:19,659 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2023-05-13T06:42:19,663 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2023-05-13T06:42:19,667 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2023-05-13T06:42:19,671 adding 'sequana/rules/igvtools/igvtools.rules' 2023-05-13T06:42:19,675 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2023-05-13T06:42:19,679 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2023-05-13T06:42:19,684 adding 'sequana/rules/kraken/1.0/kraken.rules' 2023-05-13T06:42:19,688 adding 'sequana/rules/kraken/1.1/kraken.rules' 2023-05-13T06:42:19,692 adding 'sequana/rules/kraken/2.0/kraken.rules' 2023-05-13T06:42:19,696 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2023-05-13T06:42:19,700 adding 'sequana/rules/multiqc/multiqc.rules' 2023-05-13T06:42:19,704 adding 'sequana/rules/multiqc/2.0/multiqc.rules' 2023-05-13T06:42:19,708 adding 'sequana/rules/multiqc2/multiqc2.rules' 2023-05-13T06:42:19,712 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2023-05-13T06:42:19,715 adding 'sequana/rules/picard-tools/__init__.py' 2023-05-13T06:42:19,719 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2023-05-13T06:42:19,723 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2023-05-13T06:42:19,727 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2023-05-13T06:42:19,731 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2023-05-13T06:42:19,735 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2023-05-13T06:42:19,739 adding 'sequana/rules/prokka/prokka.rules' 2023-05-13T06:42:19,743 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2023-05-13T06:42:19,746 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2023-05-13T06:42:19,750 adding 'sequana/rules/rulegraph/rulegraph.rules' 2023-05-13T06:42:19,754 adding 'sequana/rules/salmon_index/salmon_index.rules' 2023-05-13T06:42:19,758 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2023-05-13T06:42:19,762 adding 'sequana/rules/sambamba/__init__.py' 2023-05-13T06:42:19,766 adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' 2023-05-13T06:42:19,770 adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' 2023-05-13T06:42:19,774 adding 'sequana/rules/samtools_depth/samtools_depth.rules' 2023-05-13T06:42:19,778 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2023-05-13T06:42:19,781 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2023-05-13T06:42:19,785 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2023-05-13T06:42:19,789 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2023-05-13T06:42:19,793 adding 'sequana/scripts/__init__.py' 2023-05-13T06:42:19,795 adding 'sequana/scripts/common.py' 2023-05-13T06:42:19,802 adding 'sequana/scripts/coverage.py' 2023-05-13T06:42:19,806 adding 'sequana/scripts/substractor.py' 2023-05-13T06:42:19,818 adding 'sequana/scripts/taxonomy.py' 2023-05-13T06:42:19,822 adding 'sequana/scripts/main/__init__.py' 2023-05-13T06:42:19,825 adding 'sequana/scripts/main/biomart.py' 2023-05-13T06:42:19,829 adding 'sequana/scripts/main/enrichment_kegg.py' 2023-05-13T06:42:19,833 adding 'sequana/scripts/main/enrichment_panther.py' 2023-05-13T06:42:19,836 adding 'sequana/scripts/main/enrichment_uniprot.py' 2023-05-13T06:42:19,840 adding 'sequana/scripts/main/fasta.py' 2023-05-13T06:42:19,843 adding 'sequana/scripts/main/fastq.py' 2023-05-13T06:42:19,846 adding 'sequana/scripts/main/feature_count.py' 2023-05-13T06:42:19,849 adding 'sequana/scripts/main/gff_to_gtf.py' 2023-05-13T06:42:19,851 adding 'sequana/scripts/main/gff_to_light_gff.py' 2023-05-13T06:42:19,854 adding 'sequana/scripts/main/gtf_fixer.py' 2023-05-13T06:42:19,858 adding 'sequana/scripts/main/lane_merging.py' 2023-05-13T06:42:19,862 adding 'sequana/scripts/main/main.py' 2023-05-13T06:42:19,865 adding 'sequana/scripts/main/mapping.py' 2023-05-13T06:42:19,869 adding 'sequana/scripts/main/ribodesigner.py' 2023-05-13T06:42:19,874 adding 'sequana/scripts/main/rnadiff.py' 2023-05-13T06:42:19,878 adding 'sequana/scripts/main/rnaseq_compare.py' 2023-05-13T06:42:19,880 adding 'sequana/scripts/main/salmon.py' 2023-05-13T06:42:19,883 adding 'sequana/scripts/main/samplesheet.py' 2023-05-13T06:42:19,886 adding 'sequana/scripts/main/summary.py' 2023-05-13T06:42:19,889 adding 'sequana/scripts/main/taxonomy.py' 2023-05-13T06:42:19,893 adding 'sequana/scripts/main/utils.py' 2023-05-13T06:42:19,896 adding 'sequana/scripts/main/variants_comparison.py' 2023-05-13T06:42:19,900 adding 'sequana/utils/__init__.py' 2023-05-13T06:42:19,903 adding 'sequana/utils/config.py' 2023-05-13T06:42:19,908 adding 'sequana/utils/datatables_js.py' 2023-05-13T06:42:19,912 adding 'sequana/utils/df2html.py' 2023-05-13T06:42:19,915 adding 'sequana/utils/pandas.py' 2023-05-13T06:42:19,918 adding 'sequana/utils/singleton.py' 2023-05-13T06:42:19,922 adding 'sequana/utils/tree.py' 2023-05-13T06:42:19,926 adding 'sequana/viz/__init__.py' 2023-05-13T06:42:19,930 adding 'sequana/viz/anova.py' 2023-05-13T06:42:19,933 adding 'sequana/viz/boxplot.py' 2023-05-13T06:42:19,937 adding 'sequana/viz/clusterisation.py' 2023-05-13T06:42:19,941 adding 'sequana/viz/core.py' 2023-05-13T06:42:19,947 adding 'sequana/viz/corrplot.py' 2023-05-13T06:42:19,951 adding 'sequana/viz/dendogram.py' 2023-05-13T06:42:19,958 adding 'sequana/viz/heatmap.py' 2023-05-13T06:42:19,962 adding 'sequana/viz/hinton.py' 2023-05-13T06:42:19,966 adding 'sequana/viz/hist2d.py' 2023-05-13T06:42:19,970 adding 'sequana/viz/imshow.py' 2023-05-13T06:42:19,973 adding 'sequana/viz/isomap.py' 2023-05-13T06:42:19,976 adding 'sequana/viz/linkage.py' 2023-05-13T06:42:19,980 adding 'sequana/viz/mds.py' 2023-05-13T06:42:19,984 adding 'sequana/viz/pca.py' 2023-05-13T06:42:19,988 adding 'sequana/viz/scatter.py' 2023-05-13T06:42:19,992 adding 'sequana/viz/venn.py' 2023-05-13T06:42:19,996 adding 'sequana/viz/volcano.py' 2023-05-13T06:42:20,001 adding 'sequana-0.15.1.dist-info/LICENSE' 2023-05-13T06:42:20,006 adding 'sequana-0.15.1.dist-info/METADATA' 2023-05-13T06:42:20,009 adding 'sequana-0.15.1.dist-info/WHEEL' 2023-05-13T06:42:20,011 adding 'sequana-0.15.1.dist-info/entry_points.txt' 2023-05-13T06:42:20,013 adding 'sequana-0.15.1.dist-info/top_level.txt' 2023-05-13T06:42:20,022 adding 'sequana-0.15.1.dist-info/RECORD' 2023-05-13T06:42:20,105 removing build/bdist.linux-armv7l/wheel 2023-05-13T06:42:20,523 Building wheel for sequana (setup.py): finished with status 'done' 2023-05-13T06:42:20,583 Created wheel for sequana: filename=sequana-0.15.1-py3-none-any.whl size=1767788 sha256=43612181d3ff25c9a27e5535cd943d94f1aff52436c27a4d0dbf18ed1b67acf0 2023-05-13T06:42:20,586 Stored in directory: /tmp/pip-ephem-wheel-cache-_67nw2x_/wheels/20/b3/0f/230c5ef6f91ac86be7df84df1d88a2b7819f2a742e7734b0b2 2023-05-13T06:42:20,650 Successfully built sequana 2023-05-13T06:42:20,795 Removed build tracker: '/tmp/pip-build-tracker-fh4bo_tg'