2023-05-13T08:21:47,000 Created temporary directory: /tmp/pip-build-tracker-dirwutie 2023-05-13T08:21:47,003 Initialized build tracking at /tmp/pip-build-tracker-dirwutie 2023-05-13T08:21:47,004 Created build tracker: /tmp/pip-build-tracker-dirwutie 2023-05-13T08:21:47,004 Entered build tracker: /tmp/pip-build-tracker-dirwutie 2023-05-13T08:21:47,005 Created temporary directory: /tmp/pip-wheel-64rgvk29 2023-05-13T08:21:47,014 Created temporary directory: /tmp/pip-ephem-wheel-cache-_jzogh3b 2023-05-13T08:21:47,065 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-13T08:21:47,073 2 location(s) to search for versions of gillespy2: 2023-05-13T08:21:47,073 * https://pypi.org/simple/gillespy2/ 2023-05-13T08:21:47,073 * https://www.piwheels.org/simple/gillespy2/ 2023-05-13T08:21:47,074 Fetching project page and analyzing links: https://pypi.org/simple/gillespy2/ 2023-05-13T08:21:47,075 Getting page https://pypi.org/simple/gillespy2/ 2023-05-13T08:21:47,080 Found index url https://pypi.org/simple/ 2023-05-13T08:21:47,267 Fetched page https://pypi.org/simple/gillespy2/ as application/vnd.pypi.simple.v1+json 2023-05-13T08:21:47,310 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/4f/7c/cf969b647190a481b0fe6d4dec8038b50aac1dca54d60568183169fd0dfc/gillespy2-1.0.1-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,310 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/14/d2/153f864b374c1ba9a75365a8b12cab0d5cf1c9abb205d1671dc236dc35c2/gillespy2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,311 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/30/b2/20ac91683f66e836f1f70aeb87a4806edb0be18a6c7b6c879769013e1836/gillespy2-1.0.3-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,311 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/6f/00/5ea431a005d8bd53d51eee7adae9a053a1c720880a7f8dab4698d15cea5a/gillespy2-1.0.4-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,312 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/77/3d/7abb603ea023914052b17df17f0146cb2c9a61c026474e7d640a561ba23c/gillespy2-1.0.5-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,312 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/ca/2f/c07c6acd5044488be8178935103c38eb4075b34fdd2f1b1eff14f25e07c2/gillespy2-1.1.0-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,313 Found link https://files.pythonhosted.org/packages/f9/95/387af07191b0d2bf4280fbb8144b46416d62dbf6c9210f926b570c8482ec/gillespy2-1.1.0.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.1.0 2023-05-13T08:21:47,314 Skipping link: No binaries permitted for 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https://files.pythonhosted.org/packages/a2/db/0006159e7f1937d4ea9a562de8ea32fbdb46f7c9259cb419c12da2da530d/gillespy2-1.2.2-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,319 Found link https://files.pythonhosted.org/packages/e1/4a/be1b6120606307089a9f751a9b16ff9673984ebaeb7b0171dddd98d7f9be/gillespy2-1.2.2.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.2.2 2023-05-13T08:21:47,320 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/b5/f9/5607f0e1df75cc680ab90ad95e769720b40281ae584e0e0815ffac89c11d/gillespy2-1.2.3-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,321 Found link https://files.pythonhosted.org/packages/e8/8e/3f54414dd9e9c28c7d56eaccefcb73ea2bf53806f5be3f20d6475879ced0/gillespy2-1.2.3.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.2.3 2023-05-13T08:21:47,321 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/7f/d4/6c8047fbc003516fa406820fb1ed4f05107a70a13ac895c4b7335ecd6323/gillespy2-1.3.0-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,322 Found link https://files.pythonhosted.org/packages/79/63/a807a7e7f924ffa9dbca7acd9ae334ad0746586fac65b70ff104d2fcf54c/gillespy2-1.3.0.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.3.0 2023-05-13T08:21:47,322 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/4c/3f/2bc9762967f53b577ac00c9f56404984454cc053381a1991ae9f44718854/gillespy2-1.3.1-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,323 Found link https://files.pythonhosted.org/packages/c0/e3/93e318b7f96d12a874a4eacaf281b726dcd1e6e40a29bf72457f3fdcdfb3/gillespy2-1.3.1.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.3.1 2023-05-13T08:21:47,324 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/51/ce/c21bad66a087b04e4a58214499a3811978ef1478f6fe489aa19e9b0e22a2/gillespy2-1.3.2-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,324 Found link https://files.pythonhosted.org/packages/08/2c/0f8a714a41462ac0451c4a36c702481d46c71291cf804ec6c2f0415a622e/gillespy2-1.3.2.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.3.2 2023-05-13T08:21:47,325 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/13/12/3cd26b0f849f77f45e46896b330321ecda3cac1b4cc7e24863ec0c4be6dc/gillespy2-1.3.3-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,325 Found link https://files.pythonhosted.org/packages/72/bf/3f701a7317c718cdaaaec1e9cca9c22e6c5d2016336a9d2f93540be182e4/gillespy2-1.3.3.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.3.3 2023-05-13T08:21:47,326 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/78/a1/1bb5164cde1fc65173384b97ac99addd88718187f71b81053cce81d1806f/gillespy2-1.3.4-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,327 Found link https://files.pythonhosted.org/packages/c2/d5/769abe4221234e219d357628e4f7ee3c2793af91c4a14cfa257847a658b0/gillespy2-1.3.4.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.3.4 2023-05-13T08:21:47,327 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/c2/c8/f1a7932fd29f1469fe9a8aebaec6ab381776d7c2e2737f60498a172fdd39/gillespy2-1.4.0-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,328 Found link https://files.pythonhosted.org/packages/40/6f/049f33511b30f433f5cd3cb085826ff29efa43e6c640c1140406bebd5b81/gillespy2-1.4.0.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.4.0 2023-05-13T08:21:47,328 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/26/82/4b147f4237352951887eac51b814d71427fc16b30a2c8e8ee6ff066b88ee/gillespy2-1.4.1-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,329 Found link https://files.pythonhosted.org/packages/94/5a/26d5c6177400b0f5a1d8e06ab2e5878923badab8dda4400159c5977f8a66/gillespy2-1.4.1.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.4.1 2023-05-13T08:21:47,330 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/52/2b/6af2475c557bed34d45c14217e7ef04d6b3cb20aa992e31e32b9d301000c/gillespy2-1.4.2-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,330 Found link https://files.pythonhosted.org/packages/88/9e/8789afcd068a20867f789af5bc0c78b75417c5f7fbf09f3c6c26b4caf71e/gillespy2-1.4.2.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.4.2 2023-05-13T08:21:47,331 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/58/3c/b4fea9c0017f36c8f45b5fd74a50f1d1acec39d134f3862ca26b4dea2619/gillespy2-1.5.0-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,331 Found link https://files.pythonhosted.org/packages/9c/dc/4342508f38f059a91448d7857c35f44ed3ff8e447b1787fc01f407870383/gillespy2-1.5.0.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.5.0 2023-05-13T08:21:47,332 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/50/3d/1dd9fbad5938b1e8e32bf7f2f7aa8ed3b1967857b9f09a93d5d1e68ca837/gillespy2-1.5.1-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,333 Found link https://files.pythonhosted.org/packages/5a/7c/fac8fc3a04ca1cb0be5496a45bd864a9191b9d26ab7e2e0d1abbf1f8e743/gillespy2-1.5.1.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.5.1 2023-05-13T08:21:47,333 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/9e/17/be51491dc3b17f0e913cdb11d03b319e4e6a717250fbcb64f4b4c9cfa11d/gillespy2-1.5.2-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,334 Found link https://files.pythonhosted.org/packages/d3/25/d9c8ce4da5de4166ebfd3667c7f2bacc5a1098d34a90c40e9f2219eaf6e1/gillespy2-1.5.2.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.5.2 2023-05-13T08:21:47,334 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/c6/17/0425bc4820e4798faf272698fa7a64530144108d2868e1673015e835d37f/gillespy2-1.5.3-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,335 Found link https://files.pythonhosted.org/packages/9d/e9/d6664c5fd0084aa2048361d8416d5420d735da38547a3ecb57ccd6b93548/gillespy2-1.5.3.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.5.3 2023-05-13T08:21:47,336 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/b8/ae/0e6095586a62359311ea3f327d859e7ca3f4086edaa1a24708e6a994d966/gillespy2-1.5.4-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,336 Found link https://files.pythonhosted.org/packages/fc/5f/51cbb77a15f5fc5d180584b251882a7607a37fed65d3e2955d2edc4d8d7a/gillespy2-1.5.4.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.5.4 2023-05-13T08:21:47,337 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/f1/68/1e835eef81486f8f3884c50ee622736dd5a9cced7a6903e79348cb06e157/gillespy2-1.5.5-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2023-05-13T08:21:47,337 Found link https://files.pythonhosted.org/packages/bf/85/edd59ed45d3a73f28d782126eb079e2a99e0c6d8ad3cb6d95edfc9650c97/gillespy2-1.5.5.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.5.5 2023-05-13T08:21:47,338 Skipping link: No binaries permitted for gillespy2: 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https://www.piwheels.org/simple/gillespy2/gillespy2-1.2-py3-none-any.whl#sha256=c073782d0ea9c774b994bee32321a4ba7d301f241645da5451db98e631bd6c76 (from https://www.piwheels.org/simple/gillespy2/) 2023-05-13T08:21:47,668 Skipping link: No binaries permitted for gillespy2: https://www.piwheels.org/simple/gillespy2/gillespy2-1.1.2-py3-none-any.whl#sha256=e45f9ed6127abdabf3c2bfe84be74d596418aaff60864bdd69adb1185b169ff1 (from https://www.piwheels.org/simple/gillespy2/) 2023-05-13T08:21:47,668 Skipping link: No binaries permitted for gillespy2: https://www.piwheels.org/simple/gillespy2/gillespy2-1.1.1-py3-none-any.whl#sha256=5099c3463c652f1c08e76db9ef752928ca3ed8411130053116c73ee73414feed (from https://www.piwheels.org/simple/gillespy2/) 2023-05-13T08:21:47,669 Skipping link: No binaries permitted for gillespy2: https://www.piwheels.org/simple/gillespy2/gillespy2-1.1.0-py3-none-any.whl#sha256=9dbc5bd93d132cf612a3c19b177f55f8d42520693a2d65c1e3181f5dafd8f4e4 (from https://www.piwheels.org/simple/gillespy2/) 2023-05-13T08:21:47,669 Skipping link: not a file: https://www.piwheels.org/simple/gillespy2/ 2023-05-13T08:21:47,670 Skipping link: not a file: https://pypi.org/simple/gillespy2/ 2023-05-13T08:21:47,717 Given no hashes to check 1 links for project 'gillespy2': discarding no candidates 2023-05-13T08:21:47,749 Collecting gillespy2==1.8.2 2023-05-13T08:21:47,754 Created temporary directory: /tmp/pip-unpack-dmqttfdo 2023-05-13T08:21:47,848 Downloading gillespy2-1.8.2.tar.gz (307 kB) 2023-05-13T08:21:48,756 Added gillespy2==1.8.2 from https://files.pythonhosted.org/packages/10/f8/706955fff52d39a281396f204646908117edd0471d3d630f8394f8e8aba5/gillespy2-1.8.2.tar.gz to build tracker '/tmp/pip-build-tracker-dirwutie' 2023-05-13T08:21:48,759 Running setup.py (path:/tmp/pip-wheel-64rgvk29/gillespy2_bd7dd7a5a17e4e43b36413c110ea2ca2/setup.py) egg_info for package gillespy2 2023-05-13T08:21:48,761 Created temporary directory: /tmp/pip-pip-egg-info-e0kqjmi3 2023-05-13T08:21:48,761 Preparing metadata (setup.py): started 2023-05-13T08:21:48,763 Running command python setup.py egg_info 2023-05-13T08:21:50,928 running egg_info 2023-05-13T08:21:50,931 creating /tmp/pip-pip-egg-info-e0kqjmi3/gillespy2.egg-info 2023-05-13T08:21:50,989 writing /tmp/pip-pip-egg-info-e0kqjmi3/gillespy2.egg-info/PKG-INFO 2023-05-13T08:21:50,995 writing dependency_links to /tmp/pip-pip-egg-info-e0kqjmi3/gillespy2.egg-info/dependency_links.txt 2023-05-13T08:21:50,999 writing requirements to /tmp/pip-pip-egg-info-e0kqjmi3/gillespy2.egg-info/requires.txt 2023-05-13T08:21:51,002 writing top-level names to /tmp/pip-pip-egg-info-e0kqjmi3/gillespy2.egg-info/top_level.txt 2023-05-13T08:21:51,004 writing manifest file '/tmp/pip-pip-egg-info-e0kqjmi3/gillespy2.egg-info/SOURCES.txt' 2023-05-13T08:21:51,226 reading manifest file '/tmp/pip-pip-egg-info-e0kqjmi3/gillespy2.egg-info/SOURCES.txt' 2023-05-13T08:21:51,229 reading manifest template 'MANIFEST.in' 2023-05-13T08:21:51,320 adding license file 'LICENSE' 2023-05-13T08:21:51,341 writing manifest file '/tmp/pip-pip-egg-info-e0kqjmi3/gillespy2.egg-info/SOURCES.txt' 2023-05-13T08:21:51,344 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-05-13T08:21:51,344 !! 2023-05-13T08:21:51,345 ******************************************************************************** 2023-05-13T08:21:51,345 Usage of dash-separated 'description-file' will not be supported in future 2023-05-13T08:21:51,346 versions. Please use the underscore name 'description_file' instead. 2023-05-13T08:21:51,347 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-05-13T08:21:51,347 or your builds will no longer be supported. 2023-05-13T08:21:51,348 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-05-13T08:21:51,349 ******************************************************************************** 2023-05-13T08:21:51,350 !! 2023-05-13T08:21:51,350 opt = self.warn_dash_deprecation(opt, section) 2023-05-13T08:21:51,351 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'extras_requires' 2023-05-13T08:21:51,351 warnings.warn(msg) 2023-05-13T08:21:51,505 Preparing metadata (setup.py): finished with status 'done' 2023-05-13T08:21:51,520 Source in /tmp/pip-wheel-64rgvk29/gillespy2_bd7dd7a5a17e4e43b36413c110ea2ca2 has version 1.8.2, which satisfies requirement gillespy2==1.8.2 from https://files.pythonhosted.org/packages/10/f8/706955fff52d39a281396f204646908117edd0471d3d630f8394f8e8aba5/gillespy2-1.8.2.tar.gz 2023-05-13T08:21:51,522 Removed gillespy2==1.8.2 from https://files.pythonhosted.org/packages/10/f8/706955fff52d39a281396f204646908117edd0471d3d630f8394f8e8aba5/gillespy2-1.8.2.tar.gz from build tracker '/tmp/pip-build-tracker-dirwutie' 2023-05-13T08:21:51,535 Created temporary directory: /tmp/pip-unpack-pnbveah8 2023-05-13T08:21:51,536 Building wheels for collected packages: gillespy2 2023-05-13T08:21:51,545 Created temporary directory: /tmp/pip-wheel-jyi7e9xj 2023-05-13T08:21:51,546 Building wheel for gillespy2 (setup.py): started 2023-05-13T08:21:51,548 Destination directory: /tmp/pip-wheel-jyi7e9xj 2023-05-13T08:21:51,548 Running command python setup.py bdist_wheel 2023-05-13T08:21:53,383 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-05-13T08:21:53,385 !! 2023-05-13T08:21:53,386 ******************************************************************************** 2023-05-13T08:21:53,386 Usage of dash-separated 'description-file' will not be supported in future 2023-05-13T08:21:53,386 versions. Please use the underscore name 'description_file' instead. 2023-05-13T08:21:53,387 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-05-13T08:21:53,387 or your builds will no longer be supported. 2023-05-13T08:21:53,388 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-05-13T08:21:53,388 ******************************************************************************** 2023-05-13T08:21:53,389 !! 2023-05-13T08:21:53,389 opt = self.warn_dash_deprecation(opt, section) 2023-05-13T08:21:53,465 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'extras_requires' 2023-05-13T08:21:53,466 warnings.warn(msg) 2023-05-13T08:21:53,785 running bdist_wheel 2023-05-13T08:21:54,534 running build 2023-05-13T08:21:54,534 running build_py 2023-05-13T08:21:54,606 creating build 2023-05-13T08:21:54,607 creating build/lib 2023-05-13T08:21:54,608 creating build/lib/gillespy2 2023-05-13T08:21:54,611 copying gillespy2/__version__.py -> build/lib/gillespy2 2023-05-13T08:21:54,614 copying gillespy2/__init__.py -> build/lib/gillespy2 2023-05-13T08:21:54,619 creating build/lib/gillespy2/solvers 2023-05-13T08:21:54,621 copying gillespy2/solvers/__init__.py -> build/lib/gillespy2/solvers 2023-05-13T08:21:54,626 creating build/lib/gillespy2/stochss 2023-05-13T08:21:54,628 copying gillespy2/stochss/__init__.py -> build/lib/gillespy2/stochss 2023-05-13T08:21:54,632 copying gillespy2/stochss/StochSSexport.py -> build/lib/gillespy2/stochss 2023-05-13T08:21:54,638 creating build/lib/gillespy2/sbml 2023-05-13T08:21:54,640 copying gillespy2/sbml/__init__.py -> build/lib/gillespy2/sbml 2023-05-13T08:21:54,645 copying gillespy2/sbml/SBMLexport.py -> build/lib/gillespy2/sbml 2023-05-13T08:21:54,650 copying gillespy2/sbml/SBMLimport.py -> build/lib/gillespy2/sbml 2023-05-13T08:21:54,658 creating build/lib/gillespy2/core 2023-05-13T08:21:54,661 copying gillespy2/core/timespan.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,666 copying gillespy2/core/assignmentrule.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,670 copying gillespy2/core/raterule.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,674 copying gillespy2/core/parameter.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,678 copying gillespy2/core/sortableobject.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,682 copying gillespy2/core/gillespyError.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,685 copying gillespy2/core/liveGraphing.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,690 copying gillespy2/core/species.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,695 copying gillespy2/core/results.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,701 copying gillespy2/core/jsonify.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,706 copying gillespy2/core/__init__.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,709 copying gillespy2/core/events.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,714 copying gillespy2/core/functiondefinition.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,718 copying gillespy2/core/model.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,725 copying gillespy2/core/gillespySolver.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,729 copying gillespy2/core/cleanup.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,733 copying gillespy2/core/reaction.py -> build/lib/gillespy2/core 2023-05-13T08:21:54,740 creating build/lib/gillespy2/solvers/utilities 2023-05-13T08:21:54,742 copying gillespy2/solvers/utilities/cpp_support_test.py -> build/lib/gillespy2/solvers/utilities 2023-05-13T08:21:54,746 copying gillespy2/solvers/utilities/__init__.py -> build/lib/gillespy2/solvers/utilities 2023-05-13T08:21:54,749 copying gillespy2/solvers/utilities/solverutils.py -> build/lib/gillespy2/solvers/utilities 2023-05-13T08:21:54,754 copying gillespy2/solvers/utilities/Tau.py -> build/lib/gillespy2/solvers/utilities 2023-05-13T08:21:54,760 creating build/lib/gillespy2/solvers/cpp 2023-05-13T08:21:54,762 copying gillespy2/solvers/cpp/tau_leaping_c_solver.py -> build/lib/gillespy2/solvers/cpp 2023-05-13T08:21:54,768 copying gillespy2/solvers/cpp/ssa_c_solver.py -> build/lib/gillespy2/solvers/cpp 2023-05-13T08:21:54,773 copying gillespy2/solvers/cpp/c_decoder.py -> build/lib/gillespy2/solvers/cpp 2023-05-13T08:21:54,778 copying gillespy2/solvers/cpp/tau_hybrid_c_solver.py -> build/lib/gillespy2/solvers/cpp 2023-05-13T08:21:54,783 copying gillespy2/solvers/cpp/__init__.py -> build/lib/gillespy2/solvers/cpp 2023-05-13T08:21:54,787 copying gillespy2/solvers/cpp/ode_c_solver.py -> build/lib/gillespy2/solvers/cpp 2023-05-13T08:21:54,793 copying gillespy2/solvers/cpp/c_solver.py -> build/lib/gillespy2/solvers/cpp 2023-05-13T08:21:54,799 creating build/lib/gillespy2/solvers/numpy 2023-05-13T08:21:54,802 copying gillespy2/solvers/numpy/tau_hybrid_solver.py -> build/lib/gillespy2/solvers/numpy 2023-05-13T08:21:54,810 copying gillespy2/solvers/numpy/CLE_solver.py -> build/lib/gillespy2/solvers/numpy 2023-05-13T08:21:54,816 copying gillespy2/solvers/numpy/__init__.py -> build/lib/gillespy2/solvers/numpy 2023-05-13T08:21:54,821 copying gillespy2/solvers/numpy/ode_solver.py -> build/lib/gillespy2/solvers/numpy 2023-05-13T08:21:54,826 copying gillespy2/solvers/numpy/tau_leaping_solver.py -> build/lib/gillespy2/solvers/numpy 2023-05-13T08:21:54,832 copying gillespy2/solvers/numpy/ssa_solver.py -> build/lib/gillespy2/solvers/numpy 2023-05-13T08:21:54,839 creating build/lib/gillespy2/solvers/cpp/build 2023-05-13T08:21:54,842 copying gillespy2/solvers/cpp/build/template_gen.py -> build/lib/gillespy2/solvers/cpp/build 2023-05-13T08:21:54,848 copying gillespy2/solvers/cpp/build/__init__.py -> build/lib/gillespy2/solvers/cpp/build 2023-05-13T08:21:54,852 copying gillespy2/solvers/cpp/build/make.py -> build/lib/gillespy2/solvers/cpp/build 2023-05-13T08:21:54,857 copying gillespy2/solvers/cpp/build/expression.py -> build/lib/gillespy2/solvers/cpp/build 2023-05-13T08:21:54,863 copying gillespy2/solvers/cpp/build/build_engine.py -> build/lib/gillespy2/solvers/cpp/build 2023-05-13T08:21:54,868 running egg_info 2023-05-13T08:21:54,989 writing gillespy2.egg-info/PKG-INFO 2023-05-13T08:21:54,994 writing dependency_links to gillespy2.egg-info/dependency_links.txt 2023-05-13T08:21:54,999 writing requirements to gillespy2.egg-info/requires.txt 2023-05-13T08:21:55,002 writing top-level names to gillespy2.egg-info/top_level.txt 2023-05-13T08:21:55,106 reading manifest file 'gillespy2.egg-info/SOURCES.txt' 2023-05-13T08:21:55,144 reading manifest template 'MANIFEST.in' 2023-05-13T08:21:55,244 adding license file 'LICENSE' 2023-05-13T08:21:55,273 writing manifest file 'gillespy2.egg-info/SOURCES.txt' 2023-05-13T08:21:55,281 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base' is absent from the `packages` configuration. 2023-05-13T08:21:55,281 !! 2023-05-13T08:21:55,282 ******************************************************************************** 2023-05-13T08:21:55,282 ############################ 2023-05-13T08:21:55,282 # Package would be ignored # 2023-05-13T08:21:55,283 ############################ 2023-05-13T08:21:55,283 Python recognizes 'gillespy2.solvers.cpp.c_base' as an importable package[^1], 2023-05-13T08:21:55,283 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,284 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,284 package, please make sure that 'gillespy2.solvers.cpp.c_base' is explicitly added 2023-05-13T08:21:55,284 to the `packages` configuration field. 2023-05-13T08:21:55,285 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,285 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,285 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,286 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,287 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,287 If you don't want 'gillespy2.solvers.cpp.c_base' to be distributed and are 2023-05-13T08:21:55,288 already explicitly excluding 'gillespy2.solvers.cpp.c_base' via 2023-05-13T08:21:55,288 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,288 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,289 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,289 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,290 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,291 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,291 even if it does not contain any `.py` files. 2023-05-13T08:21:55,291 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,292 directory, all directories are treated like packages. 2023-05-13T08:21:55,292 ******************************************************************************** 2023-05-13T08:21:55,293 !! 2023-05-13T08:21:55,293 check.warn(importable) 2023-05-13T08:21:55,293 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.Sundials' is absent from the `packages` configuration. 2023-05-13T08:21:55,294 !! 2023-05-13T08:21:55,294 ******************************************************************************** 2023-05-13T08:21:55,295 ############################ 2023-05-13T08:21:55,295 # Package would be ignored # 2023-05-13T08:21:55,295 ############################ 2023-05-13T08:21:55,295 Python recognizes 'gillespy2.solvers.cpp.c_base.Sundials' as an importable package[^1], 2023-05-13T08:21:55,296 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,296 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,297 package, please make sure that 'gillespy2.solvers.cpp.c_base.Sundials' is explicitly added 2023-05-13T08:21:55,297 to the `packages` configuration field. 2023-05-13T08:21:55,298 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,298 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,299 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,299 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,300 If you don't want 'gillespy2.solvers.cpp.c_base.Sundials' to be distributed and are 2023-05-13T08:21:55,300 already explicitly excluding 'gillespy2.solvers.cpp.c_base.Sundials' via 2023-05-13T08:21:55,301 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,301 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,301 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,302 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,302 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,303 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,304 even if it does not contain any `.py` files. 2023-05-13T08:21:55,304 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,304 directory, all directories are treated like packages. 2023-05-13T08:21:55,304 ******************************************************************************** 2023-05-13T08:21:55,305 !! 2023-05-13T08:21:55,305 check.warn(importable) 2023-05-13T08:21:55,306 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.Sundials.include' is absent from the `packages` configuration. 2023-05-13T08:21:55,306 !! 2023-05-13T08:21:55,306 ******************************************************************************** 2023-05-13T08:21:55,307 ############################ 2023-05-13T08:21:55,307 # Package would be ignored # 2023-05-13T08:21:55,307 ############################ 2023-05-13T08:21:55,308 Python recognizes 'gillespy2.solvers.cpp.c_base.Sundials.include' as an importable package[^1], 2023-05-13T08:21:55,308 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,309 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,309 package, please make sure that 'gillespy2.solvers.cpp.c_base.Sundials.include' is explicitly added 2023-05-13T08:21:55,309 to the `packages` configuration field. 2023-05-13T08:21:55,310 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,310 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,310 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,311 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,312 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,312 If you don't want 'gillespy2.solvers.cpp.c_base.Sundials.include' to be distributed and are 2023-05-13T08:21:55,313 already explicitly excluding 'gillespy2.solvers.cpp.c_base.Sundials.include' via 2023-05-13T08:21:55,313 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,313 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,313 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,314 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,316 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,316 even if it does not contain any `.py` files. 2023-05-13T08:21:55,316 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,316 directory, all directories are treated like packages. 2023-05-13T08:21:55,317 ******************************************************************************** 2023-05-13T08:21:55,317 !! 2023-05-13T08:21:55,318 check.warn(importable) 2023-05-13T08:21:55,318 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.Sundials.src' is absent from the `packages` configuration. 2023-05-13T08:21:55,318 !! 2023-05-13T08:21:55,319 ******************************************************************************** 2023-05-13T08:21:55,319 ############################ 2023-05-13T08:21:55,320 # Package would be ignored # 2023-05-13T08:21:55,320 ############################ 2023-05-13T08:21:55,320 Python recognizes 'gillespy2.solvers.cpp.c_base.Sundials.src' as an importable package[^1], 2023-05-13T08:21:55,321 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,321 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,322 package, please make sure that 'gillespy2.solvers.cpp.c_base.Sundials.src' is explicitly added 2023-05-13T08:21:55,322 to the `packages` configuration field. 2023-05-13T08:21:55,322 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,323 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,323 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,324 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,325 If you don't want 'gillespy2.solvers.cpp.c_base.Sundials.src' to be distributed and are 2023-05-13T08:21:55,325 already explicitly excluding 'gillespy2.solvers.cpp.c_base.Sundials.src' via 2023-05-13T08:21:55,325 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,326 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,326 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,326 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,327 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,328 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,328 even if it does not contain any `.py` files. 2023-05-13T08:21:55,328 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,329 directory, all directories are treated like packages. 2023-05-13T08:21:55,329 ******************************************************************************** 2023-05-13T08:21:55,330 !! 2023-05-13T08:21:55,330 check.warn(importable) 2023-05-13T08:21:55,330 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.Tau' is absent from the `packages` configuration. 2023-05-13T08:21:55,331 !! 2023-05-13T08:21:55,331 ******************************************************************************** 2023-05-13T08:21:55,332 ############################ 2023-05-13T08:21:55,332 # Package would be ignored # 2023-05-13T08:21:55,332 ############################ 2023-05-13T08:21:55,332 Python recognizes 'gillespy2.solvers.cpp.c_base.Tau' as an importable package[^1], 2023-05-13T08:21:55,333 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,333 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,334 package, please make sure that 'gillespy2.solvers.cpp.c_base.Tau' is explicitly added 2023-05-13T08:21:55,334 to the `packages` configuration field. 2023-05-13T08:21:55,334 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,335 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,336 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,336 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,337 If you don't want 'gillespy2.solvers.cpp.c_base.Tau' to be distributed and are 2023-05-13T08:21:55,337 already explicitly excluding 'gillespy2.solvers.cpp.c_base.Tau' via 2023-05-13T08:21:55,338 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,338 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,338 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,339 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,339 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,340 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,340 even if it does not contain any `.py` files. 2023-05-13T08:21:55,341 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,341 directory, all directories are treated like packages. 2023-05-13T08:21:55,341 ******************************************************************************** 2023-05-13T08:21:55,342 !! 2023-05-13T08:21:55,342 check.warn(importable) 2023-05-13T08:21:55,342 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' is absent from the `packages` configuration. 2023-05-13T08:21:55,343 !! 2023-05-13T08:21:55,343 ******************************************************************************** 2023-05-13T08:21:55,344 ############################ 2023-05-13T08:21:55,344 # Package would be ignored # 2023-05-13T08:21:55,344 ############################ 2023-05-13T08:21:55,344 Python recognizes 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' as an importable package[^1], 2023-05-13T08:21:55,345 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,345 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,346 package, please make sure that 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' is explicitly added 2023-05-13T08:21:55,346 to the `packages` configuration field. 2023-05-13T08:21:55,347 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,347 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,347 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,348 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,349 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,349 If you don't want 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' to be distributed and are 2023-05-13T08:21:55,350 already explicitly excluding 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' via 2023-05-13T08:21:55,350 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,350 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,351 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,352 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,352 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,353 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,354 even if it does not contain any `.py` files. 2023-05-13T08:21:55,354 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,354 directory, all directories are treated like packages. 2023-05-13T08:21:55,355 ******************************************************************************** 2023-05-13T08:21:55,355 !! 2023-05-13T08:21:55,355 check.warn(importable) 2023-05-13T08:21:55,356 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' is absent from the `packages` configuration. 2023-05-13T08:21:55,356 !! 2023-05-13T08:21:55,357 ******************************************************************************** 2023-05-13T08:21:55,357 ############################ 2023-05-13T08:21:55,358 # Package would be ignored # 2023-05-13T08:21:55,358 ############################ 2023-05-13T08:21:55,359 Python recognizes 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' as an importable package[^1], 2023-05-13T08:21:55,359 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,360 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,360 package, please make sure that 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' is explicitly added 2023-05-13T08:21:55,360 to the `packages` configuration field. 2023-05-13T08:21:55,361 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,361 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,362 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,362 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,363 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,364 If you don't want 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' to be distributed and are 2023-05-13T08:21:55,364 already explicitly excluding 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' via 2023-05-13T08:21:55,365 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,365 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,365 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,366 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,367 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,368 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,369 even if it does not contain any `.py` files. 2023-05-13T08:21:55,369 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,370 directory, all directories are treated like packages. 2023-05-13T08:21:55,370 ******************************************************************************** 2023-05-13T08:21:55,371 !! 2023-05-13T08:21:55,371 check.warn(importable) 2023-05-13T08:21:55,371 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' is absent from the `packages` configuration. 2023-05-13T08:21:55,372 !! 2023-05-13T08:21:55,372 ******************************************************************************** 2023-05-13T08:21:55,373 ############################ 2023-05-13T08:21:55,373 # Package would be ignored # 2023-05-13T08:21:55,373 ############################ 2023-05-13T08:21:55,374 Python recognizes 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' as an importable package[^1], 2023-05-13T08:21:55,375 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,376 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,376 package, please make sure that 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' is explicitly added 2023-05-13T08:21:55,376 to the `packages` configuration field. 2023-05-13T08:21:55,377 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,377 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,378 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,379 If you don't want 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' to be distributed and are 2023-05-13T08:21:55,380 already explicitly excluding 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' via 2023-05-13T08:21:55,380 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,381 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,381 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,381 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,382 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,383 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,384 even if it does not contain any `.py` files. 2023-05-13T08:21:55,384 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,384 directory, all directories are treated like packages. 2023-05-13T08:21:55,385 ******************************************************************************** 2023-05-13T08:21:55,385 !! 2023-05-13T08:21:55,386 check.warn(importable) 2023-05-13T08:21:55,386 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' is absent from the `packages` configuration. 2023-05-13T08:21:55,387 !! 2023-05-13T08:21:55,388 ******************************************************************************** 2023-05-13T08:21:55,388 ############################ 2023-05-13T08:21:55,388 # Package would be ignored # 2023-05-13T08:21:55,389 ############################ 2023-05-13T08:21:55,389 Python recognizes 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' as an importable package[^1], 2023-05-13T08:21:55,389 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,390 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,390 package, please make sure that 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' is explicitly added 2023-05-13T08:21:55,391 to the `packages` configuration field. 2023-05-13T08:21:55,391 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,392 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,392 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,393 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,394 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,394 If you don't want 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' to be distributed and are 2023-05-13T08:21:55,394 already explicitly excluding 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' via 2023-05-13T08:21:55,395 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,395 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,395 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,396 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,397 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,398 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,398 even if it does not contain any `.py` files. 2023-05-13T08:21:55,398 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,399 directory, all directories are treated like packages. 2023-05-13T08:21:55,399 ******************************************************************************** 2023-05-13T08:21:55,400 !! 2023-05-13T08:21:55,400 check.warn(importable) 2023-05-13T08:21:55,401 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'gillespy2.solvers.cpp.c_base.template' is absent from the `packages` configuration. 2023-05-13T08:21:55,401 !! 2023-05-13T08:21:55,402 ******************************************************************************** 2023-05-13T08:21:55,402 ############################ 2023-05-13T08:21:55,402 # Package would be ignored # 2023-05-13T08:21:55,402 ############################ 2023-05-13T08:21:55,403 Python recognizes 'gillespy2.solvers.cpp.c_base.template' as an importable package[^1], 2023-05-13T08:21:55,403 but it is absent from setuptools' `packages` configuration. 2023-05-13T08:21:55,404 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T08:21:55,404 package, please make sure that 'gillespy2.solvers.cpp.c_base.template' is explicitly added 2023-05-13T08:21:55,404 to the `packages` configuration field. 2023-05-13T08:21:55,405 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T08:21:55,405 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T08:21:55,406 instead of `find_packages(...)`/`find:`). 2023-05-13T08:21:55,406 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T08:21:55,407 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T08:21:55,408 If you don't want 'gillespy2.solvers.cpp.c_base.template' to be distributed and are 2023-05-13T08:21:55,409 already explicitly excluding 'gillespy2.solvers.cpp.c_base.template' via 2023-05-13T08:21:55,409 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T08:21:55,409 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T08:21:55,410 combination with a more fine grained `package-data` configuration. 2023-05-13T08:21:55,411 You can read more about "package data files" on setuptools documentation page: 2023-05-13T08:21:55,411 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T08:21:55,412 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T08:21:55,412 even if it does not contain any `.py` files. 2023-05-13T08:21:55,413 On the other hand, currently there is no concept of package data 2023-05-13T08:21:55,414 directory, all directories are treated like packages. 2023-05-13T08:21:55,414 ******************************************************************************** 2023-05-13T08:21:55,415 !! 2023-05-13T08:21:55,415 check.warn(importable) 2023-05-13T08:21:55,415 creating build/lib/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:55,416 copying gillespy2/solvers/cpp/c_base/SConscript -> build/lib/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:55,416 copying gillespy2/solvers/cpp/c_base/arg_parser.cpp -> build/lib/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:55,416 copying gillespy2/solvers/cpp/c_base/arg_parser.h -> build/lib/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:55,417 copying gillespy2/solvers/cpp/c_base/model.cpp -> build/lib/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:55,417 copying gillespy2/solvers/cpp/c_base/model.h -> build/lib/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:55,417 creating build/lib/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:55,418 copying gillespy2/solvers/cpp/c_base/Sundials/LICENSE -> build/lib/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:55,418 copying gillespy2/solvers/cpp/c_base/Sundials/NOTICE -> build/lib/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:55,418 copying gillespy2/solvers/cpp/c_base/Sundials/README.md -> build/lib/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:55,419 copying gillespy2/solvers/cpp/c_base/Sundials/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:55,419 creating build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,419 copying gillespy2/solvers/cpp/c_base/Sundials/include/cvode.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,420 copying gillespy2/solvers/cpp/c_base/Sundials/include/cvode_ls.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,420 copying gillespy2/solvers/cpp/c_base/Sundials/include/cvode_proj.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,422 copying gillespy2/solvers/cpp/c_base/Sundials/include/cvode_spils.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,426 copying gillespy2/solvers/cpp/c_base/Sundials/include/nvector_serial.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,432 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_band.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,437 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_config.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,442 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_direct.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,447 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_iterative.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,452 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_linearsolver.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,457 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_math.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,462 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_matrix.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,467 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nonlinearsolver.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,472 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,478 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector_senswrapper.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,482 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_types.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,487 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_version.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,491 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunlinsol_spgmr.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,496 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_band.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,500 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_dense.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,505 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_sparse.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,509 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunnonlinsol_newton.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:55,514 creating build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,516 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,527 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_direct.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,531 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_fused_stubs.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,536 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_impl.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,542 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_io.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,548 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,554 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls_impl.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,559 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_nls.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,564 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,569 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj_impl.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,573 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_spils.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,578 copying gillespy2/solvers/cpp/c_base/Sundials/src/nvector_serial.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,584 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_band.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,589 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_debug.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,593 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_iterative.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,598 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_linearsolver.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,603 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_math.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,607 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_matrix.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,612 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nonlinearsolver.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,616 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,622 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector_senswrapper.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,627 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_band.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,632 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_dense.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,639 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_spgmr.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,645 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_band.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,651 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_dense.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,656 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_fixedpoint.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,662 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_newton.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:55,667 creating build/lib/gillespy2/solvers/cpp/c_base/Tau 2023-05-13T08:21:55,668 copying gillespy2/solvers/cpp/c_base/Tau/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/Tau 2023-05-13T08:21:55,673 copying gillespy2/solvers/cpp/c_base/Tau/tau.cpp -> build/lib/gillespy2/solvers/cpp/c_base/Tau 2023-05-13T08:21:55,678 copying gillespy2/solvers/cpp/c_base/Tau/tau.h -> build/lib/gillespy2/solvers/cpp/c_base/Tau 2023-05-13T08:21:55,682 creating build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:55,684 copying gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESimulation.cpp -> build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:55,688 copying gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.cpp -> build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:55,694 copying gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.h -> build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:55,698 copying gillespy2/solvers/cpp/c_base/ode_cpp_solver/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:55,702 creating build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:55,704 copying gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:55,708 copying gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASimulation.cpp -> build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:55,712 copying gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.cpp -> build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:55,717 copying gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.h -> build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:55,721 creating build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,722 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,728 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,733 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,737 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSimulation.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,741 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,747 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,751 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,756 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,760 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,765 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:55,770 creating build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:55,772 copying gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:55,776 copying gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSimulation.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:55,780 copying gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:55,785 copying gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:55,789 creating build/lib/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:55,791 copying gillespy2/solvers/cpp/c_base/template/template.cpp -> build/lib/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:55,796 copying gillespy2/solvers/cpp/c_base/template/template.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:55,800 copying gillespy2/solvers/cpp/c_base/template/template_defaults.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:55,804 copying gillespy2/solvers/cpp/c_base/template/template_definitions.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:55,808 copying gillespy2/solvers/cpp/c_base/template/template_opts.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:55,812 copying gillespy2/solvers/cpp/c_base/template/template_params.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:55,816 copying gillespy2/solvers/cpp/build/SConstruct -> build/lib/gillespy2/solvers/cpp/build 2023-05-13T08:21:55,893 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-13T08:21:55,894 !! 2023-05-13T08:21:55,894 ******************************************************************************** 2023-05-13T08:21:55,895 Please avoid running ``setup.py`` directly. 2023-05-13T08:21:55,895 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-13T08:21:55,895 other standards-based tools. 2023-05-13T08:21:55,896 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-13T08:21:55,896 ******************************************************************************** 2023-05-13T08:21:55,897 !! 2023-05-13T08:21:55,897 self.initialize_options() 2023-05-13T08:21:55,954 installing to build/bdist.linux-armv7l/wheel 2023-05-13T08:21:55,955 running install 2023-05-13T08:21:56,015 running install_lib 2023-05-13T08:21:56,078 creating build/bdist.linux-armv7l 2023-05-13T08:21:56,079 creating build/bdist.linux-armv7l/wheel 2023-05-13T08:21:56,083 creating build/bdist.linux-armv7l/wheel/gillespy2 2023-05-13T08:21:56,086 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers 2023-05-13T08:21:56,089 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/utilities 2023-05-13T08:21:56,091 copying build/lib/gillespy2/solvers/utilities/cpp_support_test.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/utilities 2023-05-13T08:21:56,095 copying build/lib/gillespy2/solvers/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/utilities 2023-05-13T08:21:56,098 copying build/lib/gillespy2/solvers/utilities/solverutils.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/utilities 2023-05-13T08:21:56,103 copying build/lib/gillespy2/solvers/utilities/Tau.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/utilities 2023-05-13T08:21:56,107 copying build/lib/gillespy2/solvers/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers 2023-05-13T08:21:56,112 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2023-05-13T08:21:56,114 copying build/lib/gillespy2/solvers/cpp/tau_leaping_c_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2023-05-13T08:21:56,119 copying build/lib/gillespy2/solvers/cpp/ssa_c_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2023-05-13T08:21:56,123 copying build/lib/gillespy2/solvers/cpp/c_decoder.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2023-05-13T08:21:56,128 copying build/lib/gillespy2/solvers/cpp/tau_hybrid_c_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2023-05-13T08:21:56,133 copying build/lib/gillespy2/solvers/cpp/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2023-05-13T08:21:56,138 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:56,140 copying build/lib/gillespy2/solvers/cpp/c_base/arg_parser.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:56,144 copying build/lib/gillespy2/solvers/cpp/c_base/SConscript -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:56,148 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:56,150 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/SConscript -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:56,154 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/README.md -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:56,158 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/NOTICE -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:56,162 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/LICENSE -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials 2023-05-13T08:21:56,167 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,169 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/cvode_ls.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,174 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunnonlinsol_newton.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,179 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_band.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,183 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_sparse.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,188 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/cvode_proj.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,192 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/nvector_serial.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,196 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_band.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,201 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_direct.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,206 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/cvode_spils.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,211 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nonlinearsolver.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,215 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_linearsolver.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,220 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,225 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_config.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,229 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_matrix.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,233 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_dense.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,237 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_types.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,241 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_version.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,245 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/cvode.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,249 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_iterative.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,254 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunlinsol_spgmr.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,258 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_math.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,263 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector_senswrapper.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2023-05-13T08:21:56,269 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,271 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_dense.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,276 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_dense.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,280 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_matrix.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,284 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_math.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,287 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_direct.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,291 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_iterative.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,295 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_spgmr.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,301 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/nvector_serial.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,308 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls_impl.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,312 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_band.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,317 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_band.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,321 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_band.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,325 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_fixedpoint.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,330 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_io.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,336 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,343 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_fused_stubs.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,347 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_debug.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,350 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nonlinearsolver.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,355 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,373 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_spils.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,377 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_linearsolver.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,381 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_nls.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,385 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,396 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_newton.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,401 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,406 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj_impl.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,410 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector_senswrapper.c -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,414 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_impl.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2023-05-13T08:21:56,421 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:56,423 copying build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/SConscript -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:56,427 copying build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:56,431 copying build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSimulation.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:56,434 copying build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2023-05-13T08:21:56,439 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,441 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,445 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/SConscript -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,449 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,453 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,458 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,464 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,468 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,474 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,479 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSimulation.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,483 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2023-05-13T08:21:56,488 copying build/lib/gillespy2/solvers/cpp/c_base/arg_parser.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:56,494 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:56,495 copying build/lib/gillespy2/solvers/cpp/c_base/template/template.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:56,499 copying build/lib/gillespy2/solvers/cpp/c_base/template/template_defaults.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:56,503 copying build/lib/gillespy2/solvers/cpp/c_base/template/template_opts.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:56,506 copying build/lib/gillespy2/solvers/cpp/c_base/template/template_definitions.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:56,510 copying build/lib/gillespy2/solvers/cpp/c_base/template/template_params.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:56,514 copying build/lib/gillespy2/solvers/cpp/c_base/template/template.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/template 2023-05-13T08:21:56,518 copying build/lib/gillespy2/solvers/cpp/c_base/model.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:56,524 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:56,525 copying build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver/SConscript -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:56,529 copying build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:56,533 copying build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:56,537 copying build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESimulation.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2023-05-13T08:21:56,542 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:56,543 copying build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SConscript -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:56,547 copying build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASimulation.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:56,551 copying build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:56,554 copying build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2023-05-13T08:21:56,559 copying build/lib/gillespy2/solvers/cpp/c_base/model.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base 2023-05-13T08:21:56,564 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Tau 2023-05-13T08:21:56,566 copying build/lib/gillespy2/solvers/cpp/c_base/Tau/SConscript -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Tau 2023-05-13T08:21:56,569 copying build/lib/gillespy2/solvers/cpp/c_base/Tau/tau.h -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Tau 2023-05-13T08:21:56,573 copying build/lib/gillespy2/solvers/cpp/c_base/Tau/tau.cpp -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Tau 2023-05-13T08:21:56,577 copying build/lib/gillespy2/solvers/cpp/ode_c_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2023-05-13T08:21:56,582 copying build/lib/gillespy2/solvers/cpp/c_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2023-05-13T08:21:56,587 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/build 2023-05-13T08:21:56,589 copying build/lib/gillespy2/solvers/cpp/build/template_gen.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/build 2023-05-13T08:21:56,594 copying build/lib/gillespy2/solvers/cpp/build/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/build 2023-05-13T08:21:56,597 copying build/lib/gillespy2/solvers/cpp/build/make.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/build 2023-05-13T08:21:56,602 copying build/lib/gillespy2/solvers/cpp/build/expression.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/build 2023-05-13T08:21:56,607 copying build/lib/gillespy2/solvers/cpp/build/build_engine.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/build 2023-05-13T08:21:56,611 copying build/lib/gillespy2/solvers/cpp/build/SConstruct -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/build 2023-05-13T08:21:56,616 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/numpy 2023-05-13T08:21:56,617 copying build/lib/gillespy2/solvers/numpy/tau_hybrid_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/numpy 2023-05-13T08:21:56,625 copying build/lib/gillespy2/solvers/numpy/CLE_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/numpy 2023-05-13T08:21:56,631 copying build/lib/gillespy2/solvers/numpy/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/numpy 2023-05-13T08:21:56,634 copying build/lib/gillespy2/solvers/numpy/ode_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/numpy 2023-05-13T08:21:56,639 copying build/lib/gillespy2/solvers/numpy/tau_leaping_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/numpy 2023-05-13T08:21:56,645 copying build/lib/gillespy2/solvers/numpy/ssa_solver.py -> build/bdist.linux-armv7l/wheel/gillespy2/solvers/numpy 2023-05-13T08:21:56,651 creating build/bdist.linux-armv7l/wheel/gillespy2/stochss 2023-05-13T08:21:56,653 copying build/lib/gillespy2/stochss/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2/stochss 2023-05-13T08:21:56,657 copying build/lib/gillespy2/stochss/StochSSexport.py -> build/bdist.linux-armv7l/wheel/gillespy2/stochss 2023-05-13T08:21:56,661 copying build/lib/gillespy2/__version__.py -> build/bdist.linux-armv7l/wheel/gillespy2 2023-05-13T08:21:56,668 creating build/bdist.linux-armv7l/wheel/gillespy2/sbml 2023-05-13T08:21:56,671 copying build/lib/gillespy2/sbml/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2/sbml 2023-05-13T08:21:56,675 copying build/lib/gillespy2/sbml/SBMLexport.py -> build/bdist.linux-armv7l/wheel/gillespy2/sbml 2023-05-13T08:21:56,680 copying build/lib/gillespy2/sbml/SBMLimport.py -> build/bdist.linux-armv7l/wheel/gillespy2/sbml 2023-05-13T08:21:56,685 copying build/lib/gillespy2/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2 2023-05-13T08:21:56,690 creating build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,692 copying build/lib/gillespy2/core/timespan.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,696 copying build/lib/gillespy2/core/assignmentrule.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,699 copying build/lib/gillespy2/core/raterule.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,703 copying build/lib/gillespy2/core/parameter.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,707 copying build/lib/gillespy2/core/sortableobject.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,710 copying build/lib/gillespy2/core/gillespyError.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,714 copying build/lib/gillespy2/core/liveGraphing.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,718 copying build/lib/gillespy2/core/species.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,722 copying build/lib/gillespy2/core/results.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,728 copying build/lib/gillespy2/core/jsonify.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,732 copying build/lib/gillespy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,736 copying build/lib/gillespy2/core/events.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,740 copying build/lib/gillespy2/core/functiondefinition.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,744 copying build/lib/gillespy2/core/model.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,751 copying build/lib/gillespy2/core/gillespySolver.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,756 copying build/lib/gillespy2/core/cleanup.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,759 copying build/lib/gillespy2/core/reaction.py -> build/bdist.linux-armv7l/wheel/gillespy2/core 2023-05-13T08:21:56,764 running install_egg_info 2023-05-13T08:21:56,826 Copying gillespy2.egg-info to build/bdist.linux-armv7l/wheel/gillespy2-1.8.2-py3.7.egg-info 2023-05-13T08:21:56,847 running install_scripts 2023-05-13T08:21:56,886 creating build/bdist.linux-armv7l/wheel/gillespy2-1.8.2.dist-info/WHEEL 2023-05-13T08:21:56,891 creating '/tmp/pip-wheel-jyi7e9xj/gillespy2-1.8.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-13T08:21:56,896 adding 'gillespy2/__init__.py' 2023-05-13T08:21:56,899 adding 'gillespy2/__version__.py' 2023-05-13T08:21:56,903 adding 'gillespy2/core/__init__.py' 2023-05-13T08:21:56,906 adding 'gillespy2/core/assignmentrule.py' 2023-05-13T08:21:56,909 adding 'gillespy2/core/cleanup.py' 2023-05-13T08:21:56,913 adding 'gillespy2/core/events.py' 2023-05-13T08:21:56,916 adding 'gillespy2/core/functiondefinition.py' 2023-05-13T08:21:56,919 adding 'gillespy2/core/gillespyError.py' 2023-05-13T08:21:56,923 adding 'gillespy2/core/gillespySolver.py' 2023-05-13T08:21:56,927 adding 'gillespy2/core/jsonify.py' 2023-05-13T08:21:56,932 adding 'gillespy2/core/liveGraphing.py' 2023-05-13T08:21:56,952 adding 'gillespy2/core/model.py' 2023-05-13T08:21:56,961 adding 'gillespy2/core/parameter.py' 2023-05-13T08:21:56,964 adding 'gillespy2/core/raterule.py' 2023-05-13T08:21:56,973 adding 'gillespy2/core/reaction.py' 2023-05-13T08:21:56,997 adding 'gillespy2/core/results.py' 2023-05-13T08:21:57,051 adding 'gillespy2/core/sortableobject.py' 2023-05-13T08:21:57,054 adding 'gillespy2/core/species.py' 2023-05-13T08:21:57,058 adding 'gillespy2/core/timespan.py' 2023-05-13T08:21:57,062 adding 'gillespy2/sbml/SBMLexport.py' 2023-05-13T08:21:57,068 adding 'gillespy2/sbml/SBMLimport.py' 2023-05-13T08:21:57,071 adding 'gillespy2/sbml/__init__.py' 2023-05-13T08:21:57,075 adding 'gillespy2/solvers/__init__.py' 2023-05-13T08:21:57,079 adding 'gillespy2/solvers/cpp/__init__.py' 2023-05-13T08:21:57,083 adding 'gillespy2/solvers/cpp/c_decoder.py' 2023-05-13T08:21:57,088 adding 'gillespy2/solvers/cpp/c_solver.py' 2023-05-13T08:21:57,092 adding 'gillespy2/solvers/cpp/ode_c_solver.py' 2023-05-13T08:21:57,096 adding 'gillespy2/solvers/cpp/ssa_c_solver.py' 2023-05-13T08:21:57,101 adding 'gillespy2/solvers/cpp/tau_hybrid_c_solver.py' 2023-05-13T08:21:57,106 adding 'gillespy2/solvers/cpp/tau_leaping_c_solver.py' 2023-05-13T08:21:57,110 adding 'gillespy2/solvers/cpp/build/SConstruct' 2023-05-13T08:21:57,113 adding 'gillespy2/solvers/cpp/build/__init__.py' 2023-05-13T08:21:57,117 adding 'gillespy2/solvers/cpp/build/build_engine.py' 2023-05-13T08:21:57,122 adding 'gillespy2/solvers/cpp/build/expression.py' 2023-05-13T08:21:57,126 adding 'gillespy2/solvers/cpp/build/make.py' 2023-05-13T08:21:57,132 adding 'gillespy2/solvers/cpp/build/template_gen.py' 2023-05-13T08:21:57,136 adding 'gillespy2/solvers/cpp/c_base/SConscript' 2023-05-13T08:21:57,139 adding 'gillespy2/solvers/cpp/c_base/arg_parser.cpp' 2023-05-13T08:21:57,142 adding 'gillespy2/solvers/cpp/c_base/arg_parser.h' 2023-05-13T08:21:57,146 adding 'gillespy2/solvers/cpp/c_base/model.cpp' 2023-05-13T08:21:57,151 adding 'gillespy2/solvers/cpp/c_base/model.h' 2023-05-13T08:21:57,155 adding 'gillespy2/solvers/cpp/c_base/Sundials/LICENSE' 2023-05-13T08:21:57,157 adding 'gillespy2/solvers/cpp/c_base/Sundials/NOTICE' 2023-05-13T08:21:57,160 adding 'gillespy2/solvers/cpp/c_base/Sundials/README.md' 2023-05-13T08:21:57,163 adding 'gillespy2/solvers/cpp/c_base/Sundials/SConscript' 2023-05-13T08:21:57,168 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/cvode.h' 2023-05-13T08:21:57,171 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/cvode_ls.h' 2023-05-13T08:21:57,174 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/cvode_proj.h' 2023-05-13T08:21:57,177 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/cvode_spils.h' 2023-05-13T08:21:57,181 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/nvector_serial.h' 2023-05-13T08:21:57,184 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_band.h' 2023-05-13T08:21:57,187 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_config.h' 2023-05-13T08:21:57,192 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_direct.h' 2023-05-13T08:21:57,197 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_iterative.h' 2023-05-13T08:21:57,201 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_linearsolver.h' 2023-05-13T08:21:57,204 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_math.h' 2023-05-13T08:21:57,207 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_matrix.h' 2023-05-13T08:21:57,211 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nonlinearsolver.h' 2023-05-13T08:21:57,215 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector.h' 2023-05-13T08:21:57,219 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector_senswrapper.h' 2023-05-13T08:21:57,222 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_types.h' 2023-05-13T08:21:57,225 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_version.h' 2023-05-13T08:21:57,228 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunlinsol_spgmr.h' 2023-05-13T08:21:57,232 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_band.h' 2023-05-13T08:21:57,235 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_dense.h' 2023-05-13T08:21:57,238 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_sparse.h' 2023-05-13T08:21:57,241 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunnonlinsol_newton.h' 2023-05-13T08:21:57,284 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode.c' 2023-05-13T08:21:57,290 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_direct.c' 2023-05-13T08:21:57,293 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_fused_stubs.c' 2023-05-13T08:21:57,302 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_impl.h' 2023-05-13T08:21:57,308 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_io.c' 2023-05-13T08:21:57,324 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls.c' 2023-05-13T08:21:57,329 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls_impl.h' 2023-05-13T08:21:57,333 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_nls.c' 2023-05-13T08:21:57,338 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj.c' 2023-05-13T08:21:57,341 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj_impl.h' 2023-05-13T08:21:57,344 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_spils.c' 2023-05-13T08:21:57,353 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/nvector_serial.c' 2023-05-13T08:21:57,358 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_band.c' 2023-05-13T08:21:57,361 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_debug.h' 2023-05-13T08:21:57,365 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_iterative.c' 2023-05-13T08:21:57,368 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_linearsolver.c' 2023-05-13T08:21:57,371 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_math.c' 2023-05-13T08:21:57,375 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_matrix.c' 2023-05-13T08:21:57,378 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nonlinearsolver.c' 2023-05-13T08:21:57,383 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector.c' 2023-05-13T08:21:57,388 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector_senswrapper.c' 2023-05-13T08:21:57,392 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_band.c' 2023-05-13T08:21:57,395 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_dense.c' 2023-05-13T08:21:57,402 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_spgmr.c' 2023-05-13T08:21:57,407 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_band.c' 2023-05-13T08:21:57,411 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_dense.c' 2023-05-13T08:21:57,418 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_fixedpoint.c' 2023-05-13T08:21:57,423 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_newton.c' 2023-05-13T08:21:57,427 adding 'gillespy2/solvers/cpp/c_base/Tau/SConscript' 2023-05-13T08:21:57,431 adding 'gillespy2/solvers/cpp/c_base/Tau/tau.cpp' 2023-05-13T08:21:57,434 adding 'gillespy2/solvers/cpp/c_base/Tau/tau.h' 2023-05-13T08:21:57,438 adding 'gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESimulation.cpp' 2023-05-13T08:21:57,442 adding 'gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.cpp' 2023-05-13T08:21:57,444 adding 'gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.h' 2023-05-13T08:21:57,447 adding 'gillespy2/solvers/cpp/c_base/ode_cpp_solver/SConscript' 2023-05-13T08:21:57,451 adding 'gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SConscript' 2023-05-13T08:21:57,454 adding 'gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASimulation.cpp' 2023-05-13T08:21:57,457 adding 'gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.cpp' 2023-05-13T08:21:57,459 adding 'gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.h' 2023-05-13T08:21:57,467 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.cpp' 2023-05-13T08:21:57,472 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.h' 2023-05-13T08:21:57,474 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/SConscript' 2023-05-13T08:21:57,477 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSimulation.cpp' 2023-05-13T08:21:57,484 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.cpp' 2023-05-13T08:21:57,487 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.h' 2023-05-13T08:21:57,490 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.cpp' 2023-05-13T08:21:57,493 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.h' 2023-05-13T08:21:57,498 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.cpp' 2023-05-13T08:21:57,502 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.h' 2023-05-13T08:21:57,506 adding 'gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/SConscript' 2023-05-13T08:21:57,509 adding 'gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSimulation.cpp' 2023-05-13T08:21:57,513 adding 'gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.cpp' 2023-05-13T08:21:57,515 adding 'gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.h' 2023-05-13T08:21:57,520 adding 'gillespy2/solvers/cpp/c_base/template/template.cpp' 2023-05-13T08:21:57,523 adding 'gillespy2/solvers/cpp/c_base/template/template.h' 2023-05-13T08:21:57,526 adding 'gillespy2/solvers/cpp/c_base/template/template_defaults.h' 2023-05-13T08:21:57,529 adding 'gillespy2/solvers/cpp/c_base/template/template_definitions.h' 2023-05-13T08:21:57,531 adding 'gillespy2/solvers/cpp/c_base/template/template_opts.h' 2023-05-13T08:21:57,534 adding 'gillespy2/solvers/cpp/c_base/template/template_params.h' 2023-05-13T08:21:57,542 adding 'gillespy2/solvers/numpy/CLE_solver.py' 2023-05-13T08:21:57,545 adding 'gillespy2/solvers/numpy/__init__.py' 2023-05-13T08:21:57,549 adding 'gillespy2/solvers/numpy/ode_solver.py' 2023-05-13T08:21:57,555 adding 'gillespy2/solvers/numpy/ssa_solver.py' 2023-05-13T08:21:57,574 adding 'gillespy2/solvers/numpy/tau_hybrid_solver.py' 2023-05-13T08:21:57,581 adding 'gillespy2/solvers/numpy/tau_leaping_solver.py' 2023-05-13T08:21:57,586 adding 'gillespy2/solvers/utilities/Tau.py' 2023-05-13T08:21:57,589 adding 'gillespy2/solvers/utilities/__init__.py' 2023-05-13T08:21:57,592 adding 'gillespy2/solvers/utilities/cpp_support_test.py' 2023-05-13T08:21:57,595 adding 'gillespy2/solvers/utilities/solverutils.py' 2023-05-13T08:21:57,600 adding 'gillespy2/stochss/StochSSexport.py' 2023-05-13T08:21:57,603 adding 'gillespy2/stochss/__init__.py' 2023-05-13T08:21:57,620 adding 'gillespy2-1.8.2.dist-info/LICENSE' 2023-05-13T08:21:57,626 adding 'gillespy2-1.8.2.dist-info/METADATA' 2023-05-13T08:21:57,628 adding 'gillespy2-1.8.2.dist-info/WHEEL' 2023-05-13T08:21:57,630 adding 'gillespy2-1.8.2.dist-info/top_level.txt' 2023-05-13T08:21:57,636 adding 'gillespy2-1.8.2.dist-info/RECORD' 2023-05-13T08:21:57,657 removing build/bdist.linux-armv7l/wheel 2023-05-13T08:21:57,938 Building wheel for gillespy2 (setup.py): finished with status 'done' 2023-05-13T08:21:57,956 Created wheel for gillespy2: filename=gillespy2-1.8.2-py3-none-any.whl size=398666 sha256=d16639f7ebb651815c8293d44c7ae115275c269042501e2812e8a6ce1331b328 2023-05-13T08:21:57,959 Stored in directory: /tmp/pip-ephem-wheel-cache-_jzogh3b/wheels/3c/e8/f8/3c3f648b61ad60d4876f0cee3fe06fc01a7dc0cb4e88523245 2023-05-13T08:21:58,002 Successfully built gillespy2 2023-05-13T08:21:58,039 Removed build tracker: '/tmp/pip-build-tracker-dirwutie'