2023-05-13T14:39:05,456 Created temporary directory: /tmp/pip-build-tracker-c2f91og6 2023-05-13T14:39:05,459 Initialized build tracking at /tmp/pip-build-tracker-c2f91og6 2023-05-13T14:39:05,460 Created build tracker: /tmp/pip-build-tracker-c2f91og6 2023-05-13T14:39:05,460 Entered build tracker: /tmp/pip-build-tracker-c2f91og6 2023-05-13T14:39:05,461 Created temporary directory: /tmp/pip-wheel-l01r2yt1 2023-05-13T14:39:05,469 Created temporary directory: /tmp/pip-ephem-wheel-cache-2p1zm2hj 2023-05-13T14:39:05,521 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-13T14:39:05,529 2 location(s) to search for versions of kmergenetyper: 2023-05-13T14:39:05,529 * https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:39:05,529 * https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:39:05,530 Fetching project page and analyzing links: https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:39:05,531 Getting page https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:39:05,536 Found index url https://pypi.org/simple/ 2023-05-13T14:39:05,719 Fetched page https://pypi.org/simple/kmergenetyper/ as application/vnd.pypi.simple.v1+json 2023-05-13T14:39:05,728 Found link https://files.pythonhosted.org/packages/07/e1/32da0abd3e1a424d0dfdfababf8f55009a9070f094daba8269857c24b6fb/kmergenetyper-1.0.0.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.0 2023-05-13T14:39:05,729 Found link https://files.pythonhosted.org/packages/ef/4b/5da7fc6c85ee329fdbad2f7cd0c556baf9e43a19267f4693def6b0e9bf55/kmergenetyper-1.0.1.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.1 2023-05-13T14:39:05,729 Found link https://files.pythonhosted.org/packages/0c/ea/c9704184cd46f95e44d28df008c16492f8d116a0312a524a40dc33015ad4/kmergenetyper-1.0.2.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.2 2023-05-13T14:39:05,730 Found link https://files.pythonhosted.org/packages/05/8b/76626c85314fa93a971a8a1fd2b8b5d2e29819511dca49ae79cc1d81bf6e/kmergenetyper-1.0.3.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.3 2023-05-13T14:39:05,731 Found link https://files.pythonhosted.org/packages/43/78/c63fbd748d8a0ebe0451ec683eb39c2402c05cf366bf298b352eaaf05378/kmergenetyper-1.0.4.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.4 2023-05-13T14:39:05,732 Found link https://files.pythonhosted.org/packages/91/e7/399c3dc59073bec9c6ee33ea6b3c6b12d1cc23e1393fa0cc6e2c53fe7937/kmergenetyper-1.0.5.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.5 2023-05-13T14:39:05,732 Found link https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.6 2023-05-13T14:39:05,733 Found link https://files.pythonhosted.org/packages/f1/44/d05bf03b067d18bc15e9e57a6e114b876418bb8c83be502c712cef3a958a/kmergenetyper-1.0.7.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.7 2023-05-13T14:39:05,734 Found link https://files.pythonhosted.org/packages/e3/e7/127c1d33013b6176bd975ec56c2793b2888b903479794639d464251ebf17/kmergenetyper-1.0.8.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.8 2023-05-13T14:39:05,734 Found link https://files.pythonhosted.org/packages/5d/ae/321fdf636e730e328a51851060905d6ad88481ecfc38352aafe0bb250ef7/kmergenetyper-1.0.9.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.9 2023-05-13T14:39:05,735 Found link https://files.pythonhosted.org/packages/55/85/e138b090fcfdc379c7e6e06291249c0d11c1fc68c7f841f61c0f7f57a2c7/kmergenetyper-1.0.10.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.10 2023-05-13T14:39:05,736 Found link https://files.pythonhosted.org/packages/51/c4/176bfaed5541263924c240d450b6bf5c81c4f1441901b47960ec21eaed7b/kmergenetyper-1.0.11.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.11 2023-05-13T14:39:05,736 Found link https://files.pythonhosted.org/packages/d0/51/c73da5eb63d32adf7dd6bcc811fc3862bd0d8e1cdac86aa0df8b775cf4e2/kmergenetyper-1.0.12.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.12 2023-05-13T14:39:05,737 Found link https://files.pythonhosted.org/packages/42/78/df8483c2da802b63762585695071bfafaee487fccce55b8a1f578c67129b/kmergenetyper-1.0.13.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.13 2023-05-13T14:39:05,738 Fetching project page and analyzing links: https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:39:05,739 Getting page https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:39:05,741 Found index url https://www.piwheels.org/simple/ 2023-05-13T14:39:06,002 Fetched page https://www.piwheels.org/simple/kmergenetyper/ as text/html 2023-05-13T14:39:06,014 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.13-py3-none-any.whl#sha256=2927d3014e6850edf7e766ad61d2f543ecf96a47927314963509302a03a4d073 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,014 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.12-py3-none-any.whl#sha256=7d275bd21159e5ea1c5c4bd095935bd3a23bc092c1eb0ecc9b7c1920bb5e229c (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,015 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.11-py3-none-any.whl#sha256=46fc0aa5312b96b07ce4dca881f91f369c6e37eb57486d434058b6f0ca586376 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,016 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.10-py3-none-any.whl#sha256=fbda28384401aa2623e74a3fc083be3b1d67f6b7d44a05b493768828361f9ca9 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,016 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.9-py3-none-any.whl#sha256=9f0944eee3833c2e4dac880cbcef84d2344f385dc617ff50199ce556267bfa51 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,017 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.8-py3-none-any.whl#sha256=76cf8c5c5e4fbe86b1a27920802be0604fd45a6cc94cc96a92daae48225b7d98 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,017 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.7-py3-none-any.whl#sha256=bcc5f48a2e49e413f851d462683071f08e582ba2e79e4fea6566510c5a4b768a (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,018 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.6-py3-none-any.whl#sha256=ab143997e9a6010d7564b7eb332e30020e906dccb16109f80e7d9e7a4f7f522c (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,019 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.5-py3-none-any.whl#sha256=877e9f780151c571325541fd815a495ffc63a5d59a10bb71b900d649a52791b3 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,019 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.4-py3-none-any.whl#sha256=d48c366b8f5b9a584c25199de4ad637d9148de4f7e690cf89dbc99bc0bf3cd12 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,020 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.3-py3-none-any.whl#sha256=4da0dc59a822ade5f5437e73b699edf2efd0c1ced5911496db506d0f99f8c6fc (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,020 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.2-py3-none-any.whl#sha256=8647efa3afcd2812e0cddd6b46be8e62ba9cee51f8c364a62820efc5faf54b69 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,021 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.1-py3-none-any.whl#sha256=0ac6724b8b358e46144560e2fc69d753c7ebfa34243a55477bdb59221da645dd (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,021 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.0-py3-none-any.whl#sha256=f9349c95e0500e10963c0c41b8419305a344ceda1e21cd271ff2ac1b6e0652f6 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:39:06,022 Skipping link: not a file: https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:39:06,022 Skipping link: not a file: https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:39:06,059 Given no hashes to check 1 links for project 'kmergenetyper': discarding no candidates 2023-05-13T14:39:06,091 Collecting kmergenetyper==1.0.9 2023-05-13T14:39:06,095 Created temporary directory: /tmp/pip-unpack-12q8bqpu 2023-05-13T14:39:06,191 Downloading kmergenetyper-1.0.9.tar.gz (8.0 kB) 2023-05-13T14:39:06,277 Added kmergenetyper==1.0.9 from https://files.pythonhosted.org/packages/5d/ae/321fdf636e730e328a51851060905d6ad88481ecfc38352aafe0bb250ef7/kmergenetyper-1.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-c2f91og6' 2023-05-13T14:39:06,280 Running setup.py (path:/tmp/pip-wheel-l01r2yt1/kmergenetyper_3331816c736b44418242c947c314f684/setup.py) egg_info for package kmergenetyper 2023-05-13T14:39:06,282 Created temporary directory: /tmp/pip-pip-egg-info-_yglfzss 2023-05-13T14:39:06,282 Preparing metadata (setup.py): started 2023-05-13T14:39:06,284 Running command python setup.py egg_info 2023-05-13T14:39:07,835 running egg_info 2023-05-13T14:39:07,844 creating /tmp/pip-pip-egg-info-_yglfzss/kmergenetyper.egg-info 2023-05-13T14:39:07,907 writing /tmp/pip-pip-egg-info-_yglfzss/kmergenetyper.egg-info/PKG-INFO 2023-05-13T14:39:07,911 writing dependency_links to /tmp/pip-pip-egg-info-_yglfzss/kmergenetyper.egg-info/dependency_links.txt 2023-05-13T14:39:07,916 writing top-level names to /tmp/pip-pip-egg-info-_yglfzss/kmergenetyper.egg-info/top_level.txt 2023-05-13T14:39:07,919 writing manifest file '/tmp/pip-pip-egg-info-_yglfzss/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:39:08,185 reading manifest file '/tmp/pip-pip-egg-info-_yglfzss/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:39:08,188 adding license file 'LICENSE' 2023-05-13T14:39:08,193 writing manifest file '/tmp/pip-pip-egg-info-_yglfzss/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:39:08,314 Preparing metadata (setup.py): finished with status 'done' 2023-05-13T14:39:08,324 Source in /tmp/pip-wheel-l01r2yt1/kmergenetyper_3331816c736b44418242c947c314f684 has version 1.0.9, which satisfies requirement kmergenetyper==1.0.9 from https://files.pythonhosted.org/packages/5d/ae/321fdf636e730e328a51851060905d6ad88481ecfc38352aafe0bb250ef7/kmergenetyper-1.0.9.tar.gz 2023-05-13T14:39:08,327 Removed kmergenetyper==1.0.9 from https://files.pythonhosted.org/packages/5d/ae/321fdf636e730e328a51851060905d6ad88481ecfc38352aafe0bb250ef7/kmergenetyper-1.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-c2f91og6' 2023-05-13T14:39:08,336 Created temporary directory: /tmp/pip-unpack-0u294bvj 2023-05-13T14:39:08,338 Building wheels for collected packages: kmergenetyper 2023-05-13T14:39:08,346 Created temporary directory: /tmp/pip-wheel-4ku1cps7 2023-05-13T14:39:08,347 Building wheel for kmergenetyper (setup.py): started 2023-05-13T14:39:08,349 Destination directory: /tmp/pip-wheel-4ku1cps7 2023-05-13T14:39:08,350 Running command python setup.py bdist_wheel 2023-05-13T14:39:09,908 running bdist_wheel 2023-05-13T14:39:10,607 running build 2023-05-13T14:39:10,608 running build_py 2023-05-13T14:39:10,678 creating build 2023-05-13T14:39:10,679 creating build/lib 2023-05-13T14:39:10,681 creating build/lib/kmergenetyper 2023-05-13T14:39:10,683 copying kmergenetyper/kma.py -> build/lib/kmergenetyper 2023-05-13T14:39:10,688 copying kmergenetyper/typeGenes.py -> build/lib/kmergenetyper 2023-05-13T14:39:10,691 copying kmergenetyper/__init__.py -> build/lib/kmergenetyper 2023-05-13T14:39:10,694 copying kmergenetyper/version.py -> build/lib/kmergenetyper 2023-05-13T14:39:10,698 copying kmergenetyper/realignConsensus.py -> build/lib/kmergenetyper 2023-05-13T14:39:10,701 running egg_info 2023-05-13T14:39:10,850 writing kmergenetyper.egg-info/PKG-INFO 2023-05-13T14:39:10,854 writing dependency_links to kmergenetyper.egg-info/dependency_links.txt 2023-05-13T14:39:10,859 writing top-level names to kmergenetyper.egg-info/top_level.txt 2023-05-13T14:39:10,927 reading manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:39:10,930 adding license file 'LICENSE' 2023-05-13T14:39:10,936 writing manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:39:10,940 running build_scripts 2023-05-13T14:39:10,941 creating build/scripts-3.7 2023-05-13T14:39:10,943 copying and adjusting bin/kmergenetyper -> build/scripts-3.7 2023-05-13T14:39:10,946 changing mode of build/scripts-3.7/kmergenetyper from 644 to 755 2023-05-13T14:39:11,016 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-13T14:39:11,016 !! 2023-05-13T14:39:11,017 ******************************************************************************** 2023-05-13T14:39:11,017 Please avoid running ``setup.py`` directly. 2023-05-13T14:39:11,018 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-13T14:39:11,018 other standards-based tools. 2023-05-13T14:39:11,019 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-13T14:39:11,019 ******************************************************************************** 2023-05-13T14:39:11,020 !! 2023-05-13T14:39:11,020 self.initialize_options() 2023-05-13T14:39:11,080 installing to build/bdist.linux-armv7l/wheel 2023-05-13T14:39:11,081 running install 2023-05-13T14:39:11,140 running install_lib 2023-05-13T14:39:11,207 creating build/bdist.linux-armv7l 2023-05-13T14:39:11,207 creating build/bdist.linux-armv7l/wheel 2023-05-13T14:39:11,211 creating build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:39:11,213 copying build/lib/kmergenetyper/kma.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:39:11,217 copying build/lib/kmergenetyper/typeGenes.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:39:11,221 copying build/lib/kmergenetyper/__init__.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:39:11,224 copying build/lib/kmergenetyper/version.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:39:11,228 copying build/lib/kmergenetyper/realignConsensus.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:39:11,232 running install_egg_info 2023-05-13T14:39:11,307 Copying kmergenetyper.egg-info to build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.9-py3.7.egg-info 2023-05-13T14:39:11,324 running install_scripts 2023-05-13T14:39:11,327 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.9.data 2023-05-13T14:39:11,328 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.9.data/scripts 2023-05-13T14:39:11,330 copying build/scripts-3.7/kmergenetyper -> build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.9.data/scripts 2023-05-13T14:39:11,334 changing mode of build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.9.data/scripts/kmergenetyper to 755 2023-05-13T14:39:11,360 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.9.dist-info/WHEEL 2023-05-13T14:39:11,366 creating '/tmp/pip-wheel-4ku1cps7/kmergenetyper-1.0.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-13T14:39:11,371 adding 'kmergenetyper/__init__.py' 2023-05-13T14:39:11,374 adding 'kmergenetyper/kma.py' 2023-05-13T14:39:11,377 adding 'kmergenetyper/realignConsensus.py' 2023-05-13T14:39:11,380 adding 'kmergenetyper/typeGenes.py' 2023-05-13T14:39:11,382 adding 'kmergenetyper/version.py' 2023-05-13T14:39:11,387 adding 'kmergenetyper-1.0.9.data/scripts/kmergenetyper' 2023-05-13T14:39:11,394 adding 'kmergenetyper-1.0.9.dist-info/LICENSE' 2023-05-13T14:39:11,396 adding 'kmergenetyper-1.0.9.dist-info/METADATA' 2023-05-13T14:39:11,398 adding 'kmergenetyper-1.0.9.dist-info/WHEEL' 2023-05-13T14:39:11,400 adding 'kmergenetyper-1.0.9.dist-info/top_level.txt' 2023-05-13T14:39:11,402 adding 'kmergenetyper-1.0.9.dist-info/RECORD' 2023-05-13T14:39:11,405 removing build/bdist.linux-armv7l/wheel 2023-05-13T14:39:11,568 Building wheel for kmergenetyper (setup.py): finished with status 'done' 2023-05-13T14:39:11,576 Created wheel for kmergenetyper: filename=kmergenetyper-1.0.9-py3-none-any.whl size=9312 sha256=40f073c81e4978a692271b72407989b00fc9f270d6f1e7aca670d8447780a87f 2023-05-13T14:39:11,578 Stored in directory: /tmp/pip-ephem-wheel-cache-2p1zm2hj/wheels/07/ea/60/8e0d4ce4ebc6cb2128bc54580637dbd28952f67ec954970ebd 2023-05-13T14:39:11,604 Successfully built kmergenetyper 2023-05-13T14:39:11,610 Removed build tracker: '/tmp/pip-build-tracker-c2f91og6'