2023-05-13T14:40:41,691 Created temporary directory: /tmp/pip-build-tracker-ycrij3z3 2023-05-13T14:40:41,694 Initialized build tracking at /tmp/pip-build-tracker-ycrij3z3 2023-05-13T14:40:41,695 Created build tracker: /tmp/pip-build-tracker-ycrij3z3 2023-05-13T14:40:41,695 Entered build tracker: /tmp/pip-build-tracker-ycrij3z3 2023-05-13T14:40:41,696 Created temporary directory: /tmp/pip-wheel-etzk8fgs 2023-05-13T14:40:41,705 Created temporary directory: /tmp/pip-ephem-wheel-cache-krjs9uy0 2023-05-13T14:40:41,763 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-13T14:40:41,771 2 location(s) to search for versions of kmergenetyper: 2023-05-13T14:40:41,771 * https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:40:41,771 * https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:40:41,772 Fetching project page and analyzing links: https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:40:41,773 Getting page https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:40:41,777 Found index url https://pypi.org/simple/ 2023-05-13T14:40:41,888 Fetched page https://pypi.org/simple/kmergenetyper/ as application/vnd.pypi.simple.v1+json 2023-05-13T14:40:41,897 Found link https://files.pythonhosted.org/packages/07/e1/32da0abd3e1a424d0dfdfababf8f55009a9070f094daba8269857c24b6fb/kmergenetyper-1.0.0.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.0 2023-05-13T14:40:41,898 Found link https://files.pythonhosted.org/packages/ef/4b/5da7fc6c85ee329fdbad2f7cd0c556baf9e43a19267f4693def6b0e9bf55/kmergenetyper-1.0.1.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.1 2023-05-13T14:40:41,898 Found link https://files.pythonhosted.org/packages/0c/ea/c9704184cd46f95e44d28df008c16492f8d116a0312a524a40dc33015ad4/kmergenetyper-1.0.2.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.2 2023-05-13T14:40:41,899 Found link https://files.pythonhosted.org/packages/05/8b/76626c85314fa93a971a8a1fd2b8b5d2e29819511dca49ae79cc1d81bf6e/kmergenetyper-1.0.3.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.3 2023-05-13T14:40:41,900 Found link https://files.pythonhosted.org/packages/43/78/c63fbd748d8a0ebe0451ec683eb39c2402c05cf366bf298b352eaaf05378/kmergenetyper-1.0.4.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.4 2023-05-13T14:40:41,900 Found link https://files.pythonhosted.org/packages/91/e7/399c3dc59073bec9c6ee33ea6b3c6b12d1cc23e1393fa0cc6e2c53fe7937/kmergenetyper-1.0.5.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.5 2023-05-13T14:40:41,901 Found link https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.6 2023-05-13T14:40:41,902 Found link https://files.pythonhosted.org/packages/f1/44/d05bf03b067d18bc15e9e57a6e114b876418bb8c83be502c712cef3a958a/kmergenetyper-1.0.7.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.7 2023-05-13T14:40:41,903 Found link https://files.pythonhosted.org/packages/e3/e7/127c1d33013b6176bd975ec56c2793b2888b903479794639d464251ebf17/kmergenetyper-1.0.8.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.8 2023-05-13T14:40:41,903 Found link https://files.pythonhosted.org/packages/5d/ae/321fdf636e730e328a51851060905d6ad88481ecfc38352aafe0bb250ef7/kmergenetyper-1.0.9.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.9 2023-05-13T14:40:41,904 Found link https://files.pythonhosted.org/packages/55/85/e138b090fcfdc379c7e6e06291249c0d11c1fc68c7f841f61c0f7f57a2c7/kmergenetyper-1.0.10.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.10 2023-05-13T14:40:41,905 Found link https://files.pythonhosted.org/packages/51/c4/176bfaed5541263924c240d450b6bf5c81c4f1441901b47960ec21eaed7b/kmergenetyper-1.0.11.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.11 2023-05-13T14:40:41,905 Found link https://files.pythonhosted.org/packages/d0/51/c73da5eb63d32adf7dd6bcc811fc3862bd0d8e1cdac86aa0df8b775cf4e2/kmergenetyper-1.0.12.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.12 2023-05-13T14:40:41,906 Found link https://files.pythonhosted.org/packages/42/78/df8483c2da802b63762585695071bfafaee487fccce55b8a1f578c67129b/kmergenetyper-1.0.13.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.13 2023-05-13T14:40:41,907 Fetching project page and analyzing links: https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:40:41,908 Getting page https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:40:41,910 Found index url https://www.piwheels.org/simple/ 2023-05-13T14:40:42,120 Fetched page https://www.piwheels.org/simple/kmergenetyper/ as text/html 2023-05-13T14:40:42,129 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.9-py3-none-any.whl#sha256=40f073c81e4978a692271b72407989b00fc9f270d6f1e7aca670d8447780a87f (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,130 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.8-py3-none-any.whl#sha256=76cf8c5c5e4fbe86b1a27920802be0604fd45a6cc94cc96a92daae48225b7d98 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,130 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.7-py3-none-any.whl#sha256=bcc5f48a2e49e413f851d462683071f08e582ba2e79e4fea6566510c5a4b768a (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,131 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.6-py3-none-any.whl#sha256=ab143997e9a6010d7564b7eb332e30020e906dccb16109f80e7d9e7a4f7f522c (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,131 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.5-py3-none-any.whl#sha256=877e9f780151c571325541fd815a495ffc63a5d59a10bb71b900d649a52791b3 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,132 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.4-py3-none-any.whl#sha256=d48c366b8f5b9a584c25199de4ad637d9148de4f7e690cf89dbc99bc0bf3cd12 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,132 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.3-py3-none-any.whl#sha256=4da0dc59a822ade5f5437e73b699edf2efd0c1ced5911496db506d0f99f8c6fc (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,133 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.2-py3-none-any.whl#sha256=8647efa3afcd2812e0cddd6b46be8e62ba9cee51f8c364a62820efc5faf54b69 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,133 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.1-py3-none-any.whl#sha256=0ac6724b8b358e46144560e2fc69d753c7ebfa34243a55477bdb59221da645dd (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,134 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.0-py3-none-any.whl#sha256=f9349c95e0500e10963c0c41b8419305a344ceda1e21cd271ff2ac1b6e0652f6 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:40:42,134 Skipping link: not a file: https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:40:42,135 Skipping link: not a file: https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:40:42,169 Given no hashes to check 1 links for project 'kmergenetyper': discarding no candidates 2023-05-13T14:40:42,198 Collecting kmergenetyper==1.0.10 2023-05-13T14:40:42,202 Created temporary directory: /tmp/pip-unpack-s8kj8ek_ 2023-05-13T14:40:42,298 Downloading kmergenetyper-1.0.10.tar.gz (8.0 kB) 2023-05-13T14:40:42,384 Added kmergenetyper==1.0.10 from https://files.pythonhosted.org/packages/55/85/e138b090fcfdc379c7e6e06291249c0d11c1fc68c7f841f61c0f7f57a2c7/kmergenetyper-1.0.10.tar.gz to build tracker '/tmp/pip-build-tracker-ycrij3z3' 2023-05-13T14:40:42,389 Running setup.py (path:/tmp/pip-wheel-etzk8fgs/kmergenetyper_f0079db62a4e4118bdfba818cae4ba8f/setup.py) egg_info for package kmergenetyper 2023-05-13T14:40:42,390 Created temporary directory: /tmp/pip-pip-egg-info-4a91yxan 2023-05-13T14:40:42,391 Preparing metadata (setup.py): started 2023-05-13T14:40:42,393 Running command python setup.py egg_info 2023-05-13T14:40:43,899 running egg_info 2023-05-13T14:40:43,909 creating /tmp/pip-pip-egg-info-4a91yxan/kmergenetyper.egg-info 2023-05-13T14:40:43,967 writing /tmp/pip-pip-egg-info-4a91yxan/kmergenetyper.egg-info/PKG-INFO 2023-05-13T14:40:43,971 writing dependency_links to /tmp/pip-pip-egg-info-4a91yxan/kmergenetyper.egg-info/dependency_links.txt 2023-05-13T14:40:43,977 writing top-level names to /tmp/pip-pip-egg-info-4a91yxan/kmergenetyper.egg-info/top_level.txt 2023-05-13T14:40:43,980 writing manifest file '/tmp/pip-pip-egg-info-4a91yxan/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:40:44,238 reading manifest file '/tmp/pip-pip-egg-info-4a91yxan/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:40:44,241 adding license file 'LICENSE' 2023-05-13T14:40:44,245 writing manifest file '/tmp/pip-pip-egg-info-4a91yxan/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:40:44,366 Preparing metadata (setup.py): finished with status 'done' 2023-05-13T14:40:44,377 Source in /tmp/pip-wheel-etzk8fgs/kmergenetyper_f0079db62a4e4118bdfba818cae4ba8f has version 1.0.10, which satisfies requirement kmergenetyper==1.0.10 from https://files.pythonhosted.org/packages/55/85/e138b090fcfdc379c7e6e06291249c0d11c1fc68c7f841f61c0f7f57a2c7/kmergenetyper-1.0.10.tar.gz 2023-05-13T14:40:44,379 Removed kmergenetyper==1.0.10 from https://files.pythonhosted.org/packages/55/85/e138b090fcfdc379c7e6e06291249c0d11c1fc68c7f841f61c0f7f57a2c7/kmergenetyper-1.0.10.tar.gz from build tracker '/tmp/pip-build-tracker-ycrij3z3' 2023-05-13T14:40:44,393 Created temporary directory: /tmp/pip-unpack-j2eeuat5 2023-05-13T14:40:44,394 Building wheels for collected packages: kmergenetyper 2023-05-13T14:40:44,403 Created temporary directory: /tmp/pip-wheel-brgbtzvj 2023-05-13T14:40:44,403 Building wheel for kmergenetyper (setup.py): started 2023-05-13T14:40:44,406 Destination directory: /tmp/pip-wheel-brgbtzvj 2023-05-13T14:40:44,406 Running command python setup.py bdist_wheel 2023-05-13T14:40:46,306 running bdist_wheel 2023-05-13T14:40:46,477 running build 2023-05-13T14:40:46,478 running build_py 2023-05-13T14:40:46,541 creating build 2023-05-13T14:40:46,542 creating build/lib 2023-05-13T14:40:46,543 creating build/lib/kmergenetyper 2023-05-13T14:40:46,546 copying kmergenetyper/version.py -> build/lib/kmergenetyper 2023-05-13T14:40:46,549 copying kmergenetyper/__init__.py -> build/lib/kmergenetyper 2023-05-13T14:40:46,552 copying kmergenetyper/kma.py -> build/lib/kmergenetyper 2023-05-13T14:40:46,556 copying kmergenetyper/realignConsensus.py -> build/lib/kmergenetyper 2023-05-13T14:40:46,560 copying kmergenetyper/typeGenes.py -> build/lib/kmergenetyper 2023-05-13T14:40:46,563 running egg_info 2023-05-13T14:40:46,704 writing kmergenetyper.egg-info/PKG-INFO 2023-05-13T14:40:46,707 writing dependency_links to kmergenetyper.egg-info/dependency_links.txt 2023-05-13T14:40:46,712 writing top-level names to kmergenetyper.egg-info/top_level.txt 2023-05-13T14:40:46,773 reading manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:40:46,777 adding license file 'LICENSE' 2023-05-13T14:40:46,782 writing manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:40:46,787 running build_scripts 2023-05-13T14:40:46,789 creating build/scripts-3.7 2023-05-13T14:40:46,791 copying and adjusting bin/kmergenetyper -> build/scripts-3.7 2023-05-13T14:40:46,793 changing mode of build/scripts-3.7/kmergenetyper from 644 to 755 2023-05-13T14:40:46,859 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-13T14:40:46,860 !! 2023-05-13T14:40:46,860 ******************************************************************************** 2023-05-13T14:40:46,861 Please avoid running ``setup.py`` directly. 2023-05-13T14:40:46,861 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-13T14:40:46,861 other standards-based tools. 2023-05-13T14:40:46,862 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-13T14:40:46,862 ******************************************************************************** 2023-05-13T14:40:46,863 !! 2023-05-13T14:40:46,863 self.initialize_options() 2023-05-13T14:40:46,918 installing to build/bdist.linux-armv7l/wheel 2023-05-13T14:40:46,919 running install 2023-05-13T14:40:46,979 running install_lib 2023-05-13T14:40:47,045 creating build/bdist.linux-armv7l 2023-05-13T14:40:47,046 creating build/bdist.linux-armv7l/wheel 2023-05-13T14:40:47,050 creating build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:40:47,052 copying build/lib/kmergenetyper/version.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:40:47,057 copying build/lib/kmergenetyper/__init__.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:40:47,060 copying build/lib/kmergenetyper/kma.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:40:47,064 copying build/lib/kmergenetyper/realignConsensus.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:40:47,068 copying build/lib/kmergenetyper/typeGenes.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:40:47,072 running install_egg_info 2023-05-13T14:40:47,142 Copying kmergenetyper.egg-info to build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.10-py3.7.egg-info 2023-05-13T14:40:47,159 running install_scripts 2023-05-13T14:40:47,162 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.10.data 2023-05-13T14:40:47,164 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.10.data/scripts 2023-05-13T14:40:47,167 copying build/scripts-3.7/kmergenetyper -> build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.10.data/scripts 2023-05-13T14:40:47,171 changing mode of build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.10.data/scripts/kmergenetyper to 755 2023-05-13T14:40:47,196 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-05-13T14:40:47,206 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.10.dist-info/WHEEL 2023-05-13T14:40:47,211 creating '/tmp/pip-wheel-brgbtzvj/kmergenetyper-1.0.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-13T14:40:47,217 adding 'kmergenetyper/__init__.py' 2023-05-13T14:40:47,221 adding 'kmergenetyper/kma.py' 2023-05-13T14:40:47,225 adding 'kmergenetyper/realignConsensus.py' 2023-05-13T14:40:47,229 adding 'kmergenetyper/typeGenes.py' 2023-05-13T14:40:47,232 adding 'kmergenetyper/version.py' 2023-05-13T14:40:47,237 adding 'kmergenetyper-1.0.10.data/scripts/kmergenetyper' 2023-05-13T14:40:47,245 adding 'kmergenetyper-1.0.10.dist-info/LICENSE' 2023-05-13T14:40:47,248 adding 'kmergenetyper-1.0.10.dist-info/METADATA' 2023-05-13T14:40:47,251 adding 'kmergenetyper-1.0.10.dist-info/WHEEL' 2023-05-13T14:40:47,253 adding 'kmergenetyper-1.0.10.dist-info/top_level.txt' 2023-05-13T14:40:47,255 adding 'kmergenetyper-1.0.10.dist-info/RECORD' 2023-05-13T14:40:47,258 removing build/bdist.linux-armv7l/wheel 2023-05-13T14:40:47,418 Building wheel for kmergenetyper (setup.py): finished with status 'done' 2023-05-13T14:40:47,425 Created wheel for kmergenetyper: filename=kmergenetyper-1.0.10-py3-none-any.whl size=9337 sha256=0db04840ee71fceaae2c473197c75fe0e9154b992a3a81b6782a021021ae09e6 2023-05-13T14:40:47,427 Stored in directory: /tmp/pip-ephem-wheel-cache-krjs9uy0/wheels/61/25/58/bfbc6fdbdbfc2836d1b28b01c53bd8cac4e8734e96414a2390 2023-05-13T14:40:47,453 Successfully built kmergenetyper 2023-05-13T14:40:47,461 Removed build tracker: '/tmp/pip-build-tracker-ycrij3z3'