2023-05-13T14:41:27,611 Created temporary directory: /tmp/pip-build-tracker-8rp7vi4b 2023-05-13T14:41:27,614 Initialized build tracking at /tmp/pip-build-tracker-8rp7vi4b 2023-05-13T14:41:27,614 Created build tracker: /tmp/pip-build-tracker-8rp7vi4b 2023-05-13T14:41:27,614 Entered build tracker: /tmp/pip-build-tracker-8rp7vi4b 2023-05-13T14:41:27,616 Created temporary directory: /tmp/pip-wheel-g_cfz4d1 2023-05-13T14:41:27,624 Created temporary directory: /tmp/pip-ephem-wheel-cache-9caeej71 2023-05-13T14:41:27,678 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-13T14:41:27,686 2 location(s) to search for versions of kmergenetyper: 2023-05-13T14:41:27,686 * https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:41:27,686 * https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:41:27,687 Fetching project page and analyzing links: https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:41:27,688 Getting page https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:41:27,692 Found index url https://pypi.org/simple/ 2023-05-13T14:41:27,798 Fetched page https://pypi.org/simple/kmergenetyper/ as application/vnd.pypi.simple.v1+json 2023-05-13T14:41:27,807 Found link https://files.pythonhosted.org/packages/07/e1/32da0abd3e1a424d0dfdfababf8f55009a9070f094daba8269857c24b6fb/kmergenetyper-1.0.0.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.0 2023-05-13T14:41:27,807 Found link https://files.pythonhosted.org/packages/ef/4b/5da7fc6c85ee329fdbad2f7cd0c556baf9e43a19267f4693def6b0e9bf55/kmergenetyper-1.0.1.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.1 2023-05-13T14:41:27,808 Found link https://files.pythonhosted.org/packages/0c/ea/c9704184cd46f95e44d28df008c16492f8d116a0312a524a40dc33015ad4/kmergenetyper-1.0.2.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.2 2023-05-13T14:41:27,809 Found link https://files.pythonhosted.org/packages/05/8b/76626c85314fa93a971a8a1fd2b8b5d2e29819511dca49ae79cc1d81bf6e/kmergenetyper-1.0.3.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.3 2023-05-13T14:41:27,810 Found link https://files.pythonhosted.org/packages/43/78/c63fbd748d8a0ebe0451ec683eb39c2402c05cf366bf298b352eaaf05378/kmergenetyper-1.0.4.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.4 2023-05-13T14:41:27,811 Found link https://files.pythonhosted.org/packages/91/e7/399c3dc59073bec9c6ee33ea6b3c6b12d1cc23e1393fa0cc6e2c53fe7937/kmergenetyper-1.0.5.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.5 2023-05-13T14:41:27,811 Found link https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.6 2023-05-13T14:41:27,812 Found link https://files.pythonhosted.org/packages/f1/44/d05bf03b067d18bc15e9e57a6e114b876418bb8c83be502c712cef3a958a/kmergenetyper-1.0.7.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.7 2023-05-13T14:41:27,813 Found link https://files.pythonhosted.org/packages/e3/e7/127c1d33013b6176bd975ec56c2793b2888b903479794639d464251ebf17/kmergenetyper-1.0.8.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.8 2023-05-13T14:41:27,813 Found link https://files.pythonhosted.org/packages/5d/ae/321fdf636e730e328a51851060905d6ad88481ecfc38352aafe0bb250ef7/kmergenetyper-1.0.9.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.9 2023-05-13T14:41:27,814 Found link https://files.pythonhosted.org/packages/55/85/e138b090fcfdc379c7e6e06291249c0d11c1fc68c7f841f61c0f7f57a2c7/kmergenetyper-1.0.10.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.10 2023-05-13T14:41:27,815 Found link https://files.pythonhosted.org/packages/51/c4/176bfaed5541263924c240d450b6bf5c81c4f1441901b47960ec21eaed7b/kmergenetyper-1.0.11.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.11 2023-05-13T14:41:27,815 Found link https://files.pythonhosted.org/packages/d0/51/c73da5eb63d32adf7dd6bcc811fc3862bd0d8e1cdac86aa0df8b775cf4e2/kmergenetyper-1.0.12.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.12 2023-05-13T14:41:27,816 Found link https://files.pythonhosted.org/packages/42/78/df8483c2da802b63762585695071bfafaee487fccce55b8a1f578c67129b/kmergenetyper-1.0.13.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.13 2023-05-13T14:41:27,817 Fetching project page and analyzing links: https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:41:27,818 Getting page https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:41:27,820 Found index url https://www.piwheels.org/simple/ 2023-05-13T14:41:28,092 Fetched page https://www.piwheels.org/simple/kmergenetyper/ as text/html 2023-05-13T14:41:28,100 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.9-py3-none-any.whl#sha256=40f073c81e4978a692271b72407989b00fc9f270d6f1e7aca670d8447780a87f (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,101 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.8-py3-none-any.whl#sha256=76cf8c5c5e4fbe86b1a27920802be0604fd45a6cc94cc96a92daae48225b7d98 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,102 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.7-py3-none-any.whl#sha256=bcc5f48a2e49e413f851d462683071f08e582ba2e79e4fea6566510c5a4b768a (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,102 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.6-py3-none-any.whl#sha256=ab143997e9a6010d7564b7eb332e30020e906dccb16109f80e7d9e7a4f7f522c (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,103 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.5-py3-none-any.whl#sha256=877e9f780151c571325541fd815a495ffc63a5d59a10bb71b900d649a52791b3 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,103 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.4-py3-none-any.whl#sha256=d48c366b8f5b9a584c25199de4ad637d9148de4f7e690cf89dbc99bc0bf3cd12 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,104 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.3-py3-none-any.whl#sha256=4da0dc59a822ade5f5437e73b699edf2efd0c1ced5911496db506d0f99f8c6fc (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,104 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.2-py3-none-any.whl#sha256=8647efa3afcd2812e0cddd6b46be8e62ba9cee51f8c364a62820efc5faf54b69 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,105 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.1-py3-none-any.whl#sha256=0ac6724b8b358e46144560e2fc69d753c7ebfa34243a55477bdb59221da645dd (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,105 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.0-py3-none-any.whl#sha256=f9349c95e0500e10963c0c41b8419305a344ceda1e21cd271ff2ac1b6e0652f6 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-13T14:41:28,106 Skipping link: not a file: https://www.piwheels.org/simple/kmergenetyper/ 2023-05-13T14:41:28,106 Skipping link: not a file: https://pypi.org/simple/kmergenetyper/ 2023-05-13T14:41:28,143 Given no hashes to check 1 links for project 'kmergenetyper': discarding no candidates 2023-05-13T14:41:28,175 Collecting kmergenetyper==1.0.11 2023-05-13T14:41:28,179 Created temporary directory: /tmp/pip-unpack-k062zipr 2023-05-13T14:41:28,274 Downloading kmergenetyper-1.0.11.tar.gz (8.0 kB) 2023-05-13T14:41:28,363 Added kmergenetyper==1.0.11 from https://files.pythonhosted.org/packages/51/c4/176bfaed5541263924c240d450b6bf5c81c4f1441901b47960ec21eaed7b/kmergenetyper-1.0.11.tar.gz to build tracker '/tmp/pip-build-tracker-8rp7vi4b' 2023-05-13T14:41:28,367 Running setup.py (path:/tmp/pip-wheel-g_cfz4d1/kmergenetyper_6b439bea94a843aab7c3bcecd3e2cbf0/setup.py) egg_info for package kmergenetyper 2023-05-13T14:41:28,368 Created temporary directory: /tmp/pip-pip-egg-info-33bnroww 2023-05-13T14:41:28,369 Preparing metadata (setup.py): started 2023-05-13T14:41:28,371 Running command python setup.py egg_info 2023-05-13T14:41:29,872 running egg_info 2023-05-13T14:41:29,881 creating /tmp/pip-pip-egg-info-33bnroww/kmergenetyper.egg-info 2023-05-13T14:41:29,941 writing /tmp/pip-pip-egg-info-33bnroww/kmergenetyper.egg-info/PKG-INFO 2023-05-13T14:41:29,946 writing dependency_links to /tmp/pip-pip-egg-info-33bnroww/kmergenetyper.egg-info/dependency_links.txt 2023-05-13T14:41:29,951 writing top-level names to /tmp/pip-pip-egg-info-33bnroww/kmergenetyper.egg-info/top_level.txt 2023-05-13T14:41:29,954 writing manifest file '/tmp/pip-pip-egg-info-33bnroww/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:41:30,211 reading manifest file '/tmp/pip-pip-egg-info-33bnroww/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:41:30,215 adding license file 'LICENSE' 2023-05-13T14:41:30,219 writing manifest file '/tmp/pip-pip-egg-info-33bnroww/kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:41:30,340 Preparing metadata (setup.py): finished with status 'done' 2023-05-13T14:41:30,351 Source in /tmp/pip-wheel-g_cfz4d1/kmergenetyper_6b439bea94a843aab7c3bcecd3e2cbf0 has version 1.0.11, which satisfies requirement kmergenetyper==1.0.11 from https://files.pythonhosted.org/packages/51/c4/176bfaed5541263924c240d450b6bf5c81c4f1441901b47960ec21eaed7b/kmergenetyper-1.0.11.tar.gz 2023-05-13T14:41:30,353 Removed kmergenetyper==1.0.11 from https://files.pythonhosted.org/packages/51/c4/176bfaed5541263924c240d450b6bf5c81c4f1441901b47960ec21eaed7b/kmergenetyper-1.0.11.tar.gz from build tracker '/tmp/pip-build-tracker-8rp7vi4b' 2023-05-13T14:41:30,362 Created temporary directory: /tmp/pip-unpack-rk7n1pe1 2023-05-13T14:41:30,363 Building wheels for collected packages: kmergenetyper 2023-05-13T14:41:30,373 Created temporary directory: /tmp/pip-wheel-t_5lyhqq 2023-05-13T14:41:30,374 Building wheel for kmergenetyper (setup.py): started 2023-05-13T14:41:30,376 Destination directory: /tmp/pip-wheel-t_5lyhqq 2023-05-13T14:41:30,376 Running command python setup.py bdist_wheel 2023-05-13T14:41:31,897 running bdist_wheel 2023-05-13T14:41:32,587 running build 2023-05-13T14:41:32,587 running build_py 2023-05-13T14:41:32,655 creating build 2023-05-13T14:41:32,656 creating build/lib 2023-05-13T14:41:32,657 creating build/lib/kmergenetyper 2023-05-13T14:41:32,660 copying kmergenetyper/version.py -> build/lib/kmergenetyper 2023-05-13T14:41:32,664 copying kmergenetyper/typeGenes.py -> build/lib/kmergenetyper 2023-05-13T14:41:32,667 copying kmergenetyper/__init__.py -> build/lib/kmergenetyper 2023-05-13T14:41:32,670 copying kmergenetyper/realignConsensus.py -> build/lib/kmergenetyper 2023-05-13T14:41:32,675 copying kmergenetyper/kma.py -> build/lib/kmergenetyper 2023-05-13T14:41:32,678 running egg_info 2023-05-13T14:41:32,825 writing kmergenetyper.egg-info/PKG-INFO 2023-05-13T14:41:32,828 writing dependency_links to kmergenetyper.egg-info/dependency_links.txt 2023-05-13T14:41:32,834 writing top-level names to kmergenetyper.egg-info/top_level.txt 2023-05-13T14:41:32,911 reading manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:41:32,915 adding license file 'LICENSE' 2023-05-13T14:41:32,921 writing manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-05-13T14:41:32,926 running build_scripts 2023-05-13T14:41:32,928 creating build/scripts-3.7 2023-05-13T14:41:32,931 copying and adjusting bin/kmergenetyper -> build/scripts-3.7 2023-05-13T14:41:32,934 changing mode of build/scripts-3.7/kmergenetyper from 644 to 755 2023-05-13T14:41:33,004 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-13T14:41:33,005 !! 2023-05-13T14:41:33,006 ******************************************************************************** 2023-05-13T14:41:33,006 Please avoid running ``setup.py`` directly. 2023-05-13T14:41:33,006 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-13T14:41:33,006 other standards-based tools. 2023-05-13T14:41:33,007 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-13T14:41:33,007 ******************************************************************************** 2023-05-13T14:41:33,008 !! 2023-05-13T14:41:33,008 self.initialize_options() 2023-05-13T14:41:33,072 installing to build/bdist.linux-armv7l/wheel 2023-05-13T14:41:33,072 running install 2023-05-13T14:41:33,133 running install_lib 2023-05-13T14:41:33,199 creating build/bdist.linux-armv7l 2023-05-13T14:41:33,200 creating build/bdist.linux-armv7l/wheel 2023-05-13T14:41:33,203 creating build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:41:33,205 copying build/lib/kmergenetyper/version.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:41:33,209 copying build/lib/kmergenetyper/typeGenes.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:41:33,213 copying build/lib/kmergenetyper/__init__.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:41:33,216 copying build/lib/kmergenetyper/realignConsensus.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:41:33,221 copying build/lib/kmergenetyper/kma.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-13T14:41:33,224 running install_egg_info 2023-05-13T14:41:33,298 Copying kmergenetyper.egg-info to build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.11-py3.7.egg-info 2023-05-13T14:41:33,316 running install_scripts 2023-05-13T14:41:33,318 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.11.data 2023-05-13T14:41:33,319 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.11.data/scripts 2023-05-13T14:41:33,321 copying build/scripts-3.7/kmergenetyper -> build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.11.data/scripts 2023-05-13T14:41:33,325 changing mode of build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.11.data/scripts/kmergenetyper to 755 2023-05-13T14:41:33,351 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.11.dist-info/WHEEL 2023-05-13T14:41:33,357 creating '/tmp/pip-wheel-t_5lyhqq/kmergenetyper-1.0.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-13T14:41:33,362 adding 'kmergenetyper/__init__.py' 2023-05-13T14:41:33,364 adding 'kmergenetyper/kma.py' 2023-05-13T14:41:33,368 adding 'kmergenetyper/realignConsensus.py' 2023-05-13T14:41:33,370 adding 'kmergenetyper/typeGenes.py' 2023-05-13T14:41:33,373 adding 'kmergenetyper/version.py' 2023-05-13T14:41:33,377 adding 'kmergenetyper-1.0.11.data/scripts/kmergenetyper' 2023-05-13T14:41:33,384 adding 'kmergenetyper-1.0.11.dist-info/LICENSE' 2023-05-13T14:41:33,387 adding 'kmergenetyper-1.0.11.dist-info/METADATA' 2023-05-13T14:41:33,389 adding 'kmergenetyper-1.0.11.dist-info/WHEEL' 2023-05-13T14:41:33,391 adding 'kmergenetyper-1.0.11.dist-info/top_level.txt' 2023-05-13T14:41:33,393 adding 'kmergenetyper-1.0.11.dist-info/RECORD' 2023-05-13T14:41:33,395 removing build/bdist.linux-armv7l/wheel 2023-05-13T14:41:33,559 Building wheel for kmergenetyper (setup.py): finished with status 'done' 2023-05-13T14:41:33,566 Created wheel for kmergenetyper: filename=kmergenetyper-1.0.11-py3-none-any.whl size=9352 sha256=d2ecf2fade1268e8e33fb44e3533dca334e9e36ff49c440f771ce7599520acc6 2023-05-13T14:41:33,569 Stored in directory: /tmp/pip-ephem-wheel-cache-9caeej71/wheels/2f/ed/38/f2083d123fd2bafbf8700e242000f8b5fd06a33cc140ad64be 2023-05-13T14:41:33,595 Successfully built kmergenetyper 2023-05-13T14:41:33,602 Removed build tracker: '/tmp/pip-build-tracker-8rp7vi4b'