2023-05-13T15:58:07,913 Created temporary directory: /tmp/pip-build-tracker-jw7zaqsp 2023-05-13T15:58:07,914 Initialized build tracking at /tmp/pip-build-tracker-jw7zaqsp 2023-05-13T15:58:07,915 Created build tracker: /tmp/pip-build-tracker-jw7zaqsp 2023-05-13T15:58:07,915 Entered build tracker: /tmp/pip-build-tracker-jw7zaqsp 2023-05-13T15:58:07,915 Created temporary directory: /tmp/pip-wheel-wepk_79u 2023-05-13T15:58:07,919 Created temporary directory: /tmp/pip-ephem-wheel-cache-y4afqc28 2023-05-13T15:58:07,943 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-13T15:58:07,946 2 location(s) to search for versions of gosdk: 2023-05-13T15:58:07,946 * https://pypi.org/simple/gosdk/ 2023-05-13T15:58:07,946 * https://www.piwheels.org/simple/gosdk/ 2023-05-13T15:58:07,946 Fetching project page and analyzing links: https://pypi.org/simple/gosdk/ 2023-05-13T15:58:07,947 Getting page https://pypi.org/simple/gosdk/ 2023-05-13T15:58:07,949 Found index url https://pypi.org/simple/ 2023-05-13T15:58:07,998 Fetched page https://pypi.org/simple/gosdk/ as application/vnd.pypi.simple.v1+json 2023-05-13T15:58:08,000 Skipping link: No binaries permitted for gosdk: https://files.pythonhosted.org/packages/ff/b1/333fabc47eaeace850d54ce026a861be1638c8bf6b1797de6fbe912c8cac/gosdk-0.8.0-py2.py3-none-any.whl (from https://pypi.org/simple/gosdk/) 2023-05-13T15:58:08,000 Found link https://files.pythonhosted.org/packages/bc/20/32f91ea7cb59d1ab44106189a8a9ead00fe423a2d174bedb3c4907ae8a0d/gosdk-0.8.0.tar.gz (from https://pypi.org/simple/gosdk/), version: 0.8.0 2023-05-13T15:58:08,001 Skipping link: No binaries permitted for gosdk: https://files.pythonhosted.org/packages/3c/d3/7893257deaca33078e3937818474af70f4addb6a20aee667aa4537fdf51e/gosdk-0.8.18-py2.py3-none-any.whl (from https://pypi.org/simple/gosdk/) 2023-05-13T15:58:08,001 Found link https://files.pythonhosted.org/packages/57/ff/0116cbf8d76c219ab48b6eb99cd3e9d076c6dfe2a559c9ba507a53462aee/gosdk-0.8.18.tar.gz (from https://pypi.org/simple/gosdk/), version: 0.8.18 2023-05-13T15:58:08,001 Skipping link: No binaries permitted for gosdk: https://files.pythonhosted.org/packages/51/4c/7b493af9134224f70187e932328d0a7622e935cb38079d5e4d8321bea43d/gosdk-0.9.23-py2.py3-none-any.whl (from https://pypi.org/simple/gosdk/) 2023-05-13T15:58:08,001 Found link https://files.pythonhosted.org/packages/63/62/2a2f428d09a3ed341d9018656741d51fc28e0d271e3eebe39a0b8d905f8d/gosdk-0.9.23.tar.gz (from https://pypi.org/simple/gosdk/), version: 0.9.23 2023-05-13T15:58:08,002 Fetching project page and analyzing links: https://www.piwheels.org/simple/gosdk/ 2023-05-13T15:58:08,002 Getting page https://www.piwheels.org/simple/gosdk/ 2023-05-13T15:58:08,003 Found index url https://www.piwheels.org/simple/ 2023-05-13T15:58:08,206 Fetched page https://www.piwheels.org/simple/gosdk/ as text/html 2023-05-13T15:58:08,208 Skipping link: No binaries permitted for gosdk: https://www.piwheels.org/simple/gosdk/gosdk-0.8.18-py2.py3-none-any.whl#sha256=f08537fae081f48d94f984cd2ab631c8f4e281b88af0321f94d73c501bbde681 (from https://www.piwheels.org/simple/gosdk/) 2023-05-13T15:58:08,208 Skipping link: No binaries permitted for gosdk: https://www.piwheels.org/simple/gosdk/gosdk-0.8.0-py2.py3-none-any.whl#sha256=453e951a75dedde34fa2668f762271527697682413b8ebf5f8893741c53d4641 (from https://www.piwheels.org/simple/gosdk/) 2023-05-13T15:58:08,208 Skipping link: not a file: https://www.piwheels.org/simple/gosdk/ 2023-05-13T15:58:08,208 Skipping link: not a file: https://pypi.org/simple/gosdk/ 2023-05-13T15:58:08,227 Given no hashes to check 1 links for project 'gosdk': discarding no candidates 2023-05-13T15:58:08,244 Collecting gosdk==0.9.23 2023-05-13T15:58:08,247 Created temporary directory: /tmp/pip-unpack-pjfhfkof 2023-05-13T15:58:08,290 Downloading gosdk-0.9.23.tar.gz (45 kB) 2023-05-13T15:58:08,916 Added gosdk==0.9.23 from https://files.pythonhosted.org/packages/63/62/2a2f428d09a3ed341d9018656741d51fc28e0d271e3eebe39a0b8d905f8d/gosdk-0.9.23.tar.gz to build tracker '/tmp/pip-build-tracker-jw7zaqsp' 2023-05-13T15:58:08,918 Running setup.py (path:/tmp/pip-wheel-wepk_79u/gosdk_3c7be04cd1174fbd80b888197931d8fc/setup.py) egg_info for package gosdk 2023-05-13T15:58:08,919 Created temporary directory: /tmp/pip-pip-egg-info-zqveduhj 2023-05-13T15:58:08,919 Preparing metadata (setup.py): started 2023-05-13T15:58:08,920 Running command python setup.py egg_info 2023-05-13T15:58:09,414 Traceback (most recent call last): 2023-05-13T15:58:09,414 File "", line 2, in 2023-05-13T15:58:09,414 File "", line 34, in 2023-05-13T15:58:09,415 File "/tmp/pip-wheel-wepk_79u/gosdk_3c7be04cd1174fbd80b888197931d8fc/setup.py", line 6, in 2023-05-13T15:58:09,415 with open('./src/genomoncology/README.md') as readme_file: 2023-05-13T15:58:09,416 FileNotFoundError: [Errno 2] No such file or directory: './src/genomoncology/README.md' 2023-05-13T15:58:09,462 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-05-13T15:58:09,480 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-05-13T15:58:09,480 exec(compile('"'"''"'"''"'"' 2023-05-13T15:58:09,480 # This is -- a caller that pip uses to run setup.py 2023-05-13T15:58:09,480 # 2023-05-13T15:58:09,480 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-05-13T15:58:09,480 # import from `distutils.core` to work with newer packaging standards. 2023-05-13T15:58:09,480 # - It provides a clear error message when setuptools is not installed. 2023-05-13T15:58:09,480 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-05-13T15:58:09,480 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-05-13T15:58:09,480 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-05-13T15:58:09,480 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-05-13T15:58:09,480 import os, sys, tokenize 2023-05-13T15:58:09,480 2023-05-13T15:58:09,480 try: 2023-05-13T15:58:09,480 import setuptools 2023-05-13T15:58:09,480 except ImportError as error: 2023-05-13T15:58:09,480 print( 2023-05-13T15:58:09,480 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-05-13T15:58:09,480 "the build environment.", 2023-05-13T15:58:09,480 file=sys.stderr, 2023-05-13T15:58:09,480 ) 2023-05-13T15:58:09,480 sys.exit(1) 2023-05-13T15:58:09,480 2023-05-13T15:58:09,480 __file__ = %r 2023-05-13T15:58:09,480 sys.argv[0] = __file__ 2023-05-13T15:58:09,480 2023-05-13T15:58:09,480 if os.path.exists(__file__): 2023-05-13T15:58:09,480 filename = __file__ 2023-05-13T15:58:09,480 with tokenize.open(__file__) as f: 2023-05-13T15:58:09,480 setup_py_code = f.read() 2023-05-13T15:58:09,480 else: 2023-05-13T15:58:09,480 filename = "" 2023-05-13T15:58:09,480 setup_py_code = "from setuptools import setup; setup()" 2023-05-13T15:58:09,480 2023-05-13T15:58:09,480 exec(compile(setup_py_code, filename, "exec")) 2023-05-13T15:58:09,480 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-wepk_79u/gosdk_3c7be04cd1174fbd80b888197931d8fc/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-zqveduhj[/] 2023-05-13T15:58:09,480 [bold magenta]cwd[/]: /tmp/pip-wheel-wepk_79u/gosdk_3c7be04cd1174fbd80b888197931d8fc/ 2023-05-13T15:58:09,480 Preparing metadata (setup.py): finished with status 'error' 2023-05-13T15:58:09,482 ERROR: [present-rich] metadata generation failed 2023-05-13T15:58:09,488 Exception information: 2023-05-13T15:58:09,488 Traceback (most recent call last): 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-05-13T15:58:09,488 call_subprocess( 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-05-13T15:58:09,488 raise error 2023-05-13T15:58:09,488 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-05-13T15:58:09,488 2023-05-13T15:58:09,488 The above exception was the direct cause of the following exception: 2023-05-13T15:58:09,488 2023-05-13T15:58:09,488 Traceback (most recent call last): 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-05-13T15:58:09,488 status = run_func(*args) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-05-13T15:58:09,488 return func(self, options, args) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-05-13T15:58:09,488 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-05-13T15:58:09,488 result = self._result = resolver.resolve( 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-05-13T15:58:09,488 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-05-13T15:58:09,488 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-05-13T15:58:09,488 if not criterion.candidates: 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-05-13T15:58:09,488 return bool(self._sequence) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-05-13T15:58:09,488 return any(self) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-05-13T15:58:09,488 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-05-13T15:58:09,488 candidate = func() 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-05-13T15:58:09,488 self._link_candidate_cache[link] = LinkCandidate( 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-05-13T15:58:09,488 super().__init__( 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-05-13T15:58:09,488 self.dist = self._prepare() 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-05-13T15:58:09,488 dist = self._prepare_distribution() 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-05-13T15:58:09,488 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 516, in prepare_linked_requirement 2023-05-13T15:58:09,488 return self._prepare_linked_requirement(req, parallel_builds) 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 631, in _prepare_linked_requirement 2023-05-13T15:58:09,488 dist = _get_prepared_distribution( 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-05-13T15:58:09,488 abstract_dist.prepare_distribution_metadata( 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-05-13T15:58:09,488 self.req.prepare_metadata() 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 561, in prepare_metadata 2023-05-13T15:58:09,488 self.metadata_directory = generate_metadata_legacy( 2023-05-13T15:58:09,488 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-05-13T15:58:09,488 raise MetadataGenerationFailed(package_details=details) from error 2023-05-13T15:58:09,488 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-05-13T15:58:09,498 Removed gosdk==0.9.23 from https://files.pythonhosted.org/packages/63/62/2a2f428d09a3ed341d9018656741d51fc28e0d271e3eebe39a0b8d905f8d/gosdk-0.9.23.tar.gz from build tracker '/tmp/pip-build-tracker-jw7zaqsp' 2023-05-13T15:58:09,498 Removed build tracker: '/tmp/pip-build-tracker-jw7zaqsp'