2023-05-13T21:09:10,341 Created temporary directory: /tmp/pip-build-tracker-8zdyn9x9 2023-05-13T21:09:10,344 Initialized build tracking at /tmp/pip-build-tracker-8zdyn9x9 2023-05-13T21:09:10,344 Created build tracker: /tmp/pip-build-tracker-8zdyn9x9 2023-05-13T21:09:10,344 Entered build tracker: /tmp/pip-build-tracker-8zdyn9x9 2023-05-13T21:09:10,346 Created temporary directory: /tmp/pip-wheel-2yyca18q 2023-05-13T21:09:10,354 Created temporary directory: /tmp/pip-ephem-wheel-cache-kuc_mg67 2023-05-13T21:09:10,405 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-13T21:09:10,413 2 location(s) to search for versions of abutils: 2023-05-13T21:09:10,413 * https://pypi.org/simple/abutils/ 2023-05-13T21:09:10,413 * https://www.piwheels.org/simple/abutils/ 2023-05-13T21:09:10,414 Fetching project page and analyzing links: https://pypi.org/simple/abutils/ 2023-05-13T21:09:10,415 Getting page https://pypi.org/simple/abutils/ 2023-05-13T21:09:10,419 Found index url https://pypi.org/simple/ 2023-05-13T21:09:10,603 Fetched page https://pypi.org/simple/abutils/ as application/vnd.pypi.simple.v1+json 2023-05-13T21:09:10,620 Found link https://files.pythonhosted.org/packages/50/68/e90af4390a5bf4ae7f4d4c320618c21938407e2cbccb1d8eb9e2128129f7/abutils-0.0.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.1 2023-05-13T21:09:10,621 Found link https://files.pythonhosted.org/packages/2a/34/20450169e044c8a5b3f0789cb6792ac3f0d94ee7314aecda4332460d3996/abutils-0.0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.2 2023-05-13T21:09:10,622 Found link https://files.pythonhosted.org/packages/e7/0b/92eacaadffa6dbe5536af17cd2288991862e5ca8a5193bc3f5f0c511939b/abutils-0.0.3.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.3 2023-05-13T21:09:10,623 Found link https://files.pythonhosted.org/packages/66/9c/c88a230d9a7df70ed076345a5697bffbac79affa98de6bc7335cbe399508/abutils-0.0.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.4 2023-05-13T21:09:10,624 Found link https://files.pythonhosted.org/packages/36/3e/e6b030787fca71eedbaaa8be3b8b0169a655c7403622bc0c418918121b72/abutils-0.0.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.5 2023-05-13T21:09:10,624 Found link https://files.pythonhosted.org/packages/c2/4b/a1c076b09bf2ab1f5545d0f9fe05c7861166c49ea9846f2d72f6306e792c/abutils-0.0.6.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.6 2023-05-13T21:09:10,625 Found link https://files.pythonhosted.org/packages/ba/48/ccd3a0f5de7c0b2857f163b24120b027f9b2d88b5b8898646a6126d2ce6b/abutils-0.0.7.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.7 2023-05-13T21:09:10,626 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/8e/ba/0b774748bc954d98e3246982d1017d09459ecbc21a76628161aa49d4e3fc/abutils-0.1.0-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-05-13T21:09:10,626 Found link https://files.pythonhosted.org/packages/8d/4f/f8bde54f3acd7bf945ac9d612145ca8fc2a0eecf26aa439921941211a91a/abutils-0.1.0.tar.gz (from https://pypi.org/simple/abutils/), version: 0.1.0 2023-05-13T21:09:10,627 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/99/db/544d2861d9f00f1454ae247e50d074062929bdeb0c2d0e968f51e132320e/abutils-0.1.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-05-13T21:09:10,628 Found link https://files.pythonhosted.org/packages/2e/53/f9f6ef913b46b47233508bafc5c4869a46f3c66a0ec9e446bef0537c88f6/abutils-0.1.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.1.1 2023-05-13T21:09:10,628 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/72/6e/6af90e6c896511e60fa77eeb6742933760f8cc5ba8a8ffbea1bf00440dcf/abutils-0.2-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-05-13T21:09:10,629 Found link https://files.pythonhosted.org/packages/58/06/198c2161367eed257bbbc6295af2f6bd9148bccd26f67535bd07d1974dfb/abutils-0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2 2023-05-13T21:09:10,629 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/e9/6b/41bd824641aee954bdc00d6fcc3d7f411af32a68acdbb7330c59d7fab67f/abutils-0.2.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-05-13T21:09:10,630 Found link https://files.pythonhosted.org/packages/c3/51/083596ecb529073ccc5142ffe85766aef208bd4d6925da8f771f6f95e256/abutils-0.2.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.1 2023-05-13T21:09:10,631 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/94/cf/ae1ab5392b0f34c874cc8388d4df2985a2fc02d63dedcad0c2f4ca4b92bd/abutils-0.2.2-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-05-13T21:09:10,631 Found link 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https://files.pythonhosted.org/packages/cc/04/a14461968dc575254af0e23cb7b259bfd57baa683653d88fcb21af6d526d/abutils-0.2.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.4 2023-05-13T21:09:10,634 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/f8/0d/f3f7b8eb834c24ffe8bf065ce6ab6bf5a60953ea369b1714a5130c0f17fe/abutils-0.2.5-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-05-13T21:09:10,635 Found link https://files.pythonhosted.org/packages/3a/91/b7e6649e58b286eb6bfcc14fbe33cc120e3ff30fbacf681b4dca97a448bd/abutils-0.2.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.5 2023-05-13T21:09:10,636 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/12/e1/e1ceba3721fa4fff7f176206a290b81ec655694bd89734038c4d699fbb7e/abutils-0.2.6-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-05-13T21:09:10,636 Found link 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https://files.pythonhosted.org/packages/16/2f/6264367df474ff3a9a5c5ef42771661bac1085d7133867270edb7c118684/abutils-0.2.10.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.10 2023-05-13T21:09:10,641 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/92/86/5f63b53160c54dacfd8f2653c0a6039fb4366a117c060e5f289766ac7fa8/abutils-0.3.0-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-05-13T21:09:10,642 Found link https://files.pythonhosted.org/packages/13/fc/afc4bbc66213912ee11b40a8ea571270b317c4367b5f28c523f6c3d4858f/abutils-0.3.0.tar.gz (from https://pypi.org/simple/abutils/), version: 0.3.0 2023-05-13T21:09:10,643 Fetching project page and analyzing links: https://www.piwheels.org/simple/abutils/ 2023-05-13T21:09:10,644 Getting page https://www.piwheels.org/simple/abutils/ 2023-05-13T21:09:10,646 Found index url https://www.piwheels.org/simple/ 2023-05-13T21:09:10,907 Fetched page https://www.piwheels.org/simple/abutils/ as text/html 2023-05-13T21:09:10,923 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.3.0-py3-none-any.whl#sha256=b939d0adc2865fbd32bee777ccc499129b4e4cdbd93f4f089ce53e2d41dddd40 (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,923 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.10-py3-none-any.whl#sha256=e3c2000d5fbda1d63690e6f816caf1426457be23f1c6a8fa1ad98e7c60affdc2 (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,924 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.9-py3-none-any.whl#sha256=84839a0dab320a6696a87f066a0305c0d4291cabe5e823926b72a5ad8dd04251 (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,924 Skipping link: No binaries permitted for abutils: 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2023-05-13T21:09:10,927 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.4-py3-none-any.whl#sha256=b7cc50211227f95b0544149ddb49e17cf733ece77b8531c94bcdebabef433b03 (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,927 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.3-py3-none-any.whl#sha256=6b5c561a177253264806f3f200ae9aaec814f0c8c0d4205621e783ed7a7e666d (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,928 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.2-py3-none-any.whl#sha256=c5fdeed840fe64d0f8ef6b8b41d34c9d30aaf82fe1313e5d2001037d4f2cdf4c (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,928 Skipping link: No binaries permitted for abutils: 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2023-05-13T21:09:10,930 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.7-py3-none-any.whl#sha256=54b0191660cee12eae66a1c9a280779122ee367b18dc31f5386ed7d9695ba86d (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,931 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.6-py3-none-any.whl#sha256=fa097decefc770e42b78c47c6b74e544cb886b2913fdd2a9764d1649c1083edc (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,931 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.5-py3-none-any.whl#sha256=82da39e304387e62441d40c8da3e8b8e4f88b62838f0cfa01c9ac53272fd9322 (from https://www.piwheels.org/simple/abutils/) 2023-05-13T21:09:10,932 Skipping link: No binaries permitted for abutils: 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2023-05-13T21:09:10,934 Skipping link: not a file: https://www.piwheels.org/simple/abutils/ 2023-05-13T21:09:10,934 Skipping link: not a file: https://pypi.org/simple/abutils/ 2023-05-13T21:09:10,971 Given no hashes to check 1 links for project 'abutils': discarding no candidates 2023-05-13T21:09:11,003 Collecting abutils==0.3.0 2023-05-13T21:09:11,007 Created temporary directory: /tmp/pip-unpack-3ddz71yq 2023-05-13T21:09:11,183 Downloading abutils-0.3.0.tar.gz (20.2 MB) 2023-05-13T21:09:22,978 Added abutils==0.3.0 from https://files.pythonhosted.org/packages/13/fc/afc4bbc66213912ee11b40a8ea571270b317c4367b5f28c523f6c3d4858f/abutils-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-8zdyn9x9' 2023-05-13T21:09:22,982 Running setup.py (path:/tmp/pip-wheel-2yyca18q/abutils_82e271e3bf35403ba23ce7e59715fae4/setup.py) egg_info for package abutils 2023-05-13T21:09:22,983 Created temporary directory: /tmp/pip-pip-egg-info-4cqxgjus 2023-05-13T21:09:22,984 Preparing metadata (setup.py): started 2023-05-13T21:09:22,986 Running command python setup.py egg_info 2023-05-13T21:09:26,418 running egg_info 2023-05-13T21:09:26,421 creating /tmp/pip-pip-egg-info-4cqxgjus/abutils.egg-info 2023-05-13T21:09:26,477 writing /tmp/pip-pip-egg-info-4cqxgjus/abutils.egg-info/PKG-INFO 2023-05-13T21:09:26,481 writing dependency_links to /tmp/pip-pip-egg-info-4cqxgjus/abutils.egg-info/dependency_links.txt 2023-05-13T21:09:26,486 writing requirements to /tmp/pip-pip-egg-info-4cqxgjus/abutils.egg-info/requires.txt 2023-05-13T21:09:26,488 writing top-level names to /tmp/pip-pip-egg-info-4cqxgjus/abutils.egg-info/top_level.txt 2023-05-13T21:09:26,490 writing manifest file '/tmp/pip-pip-egg-info-4cqxgjus/abutils.egg-info/SOURCES.txt' 2023-05-13T21:09:26,669 reading manifest file '/tmp/pip-pip-egg-info-4cqxgjus/abutils.egg-info/SOURCES.txt' 2023-05-13T21:09:26,672 reading manifest template 'MANIFEST.in' 2023-05-13T21:09:26,685 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-05-13T21:09:26,686 !! 2023-05-13T21:09:26,686 ******************************************************************************** 2023-05-13T21:09:26,687 Usage of dash-separated 'description-file' will not be supported in future 2023-05-13T21:09:26,687 versions. Please use the underscore name 'description_file' instead. 2023-05-13T21:09:26,688 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-05-13T21:09:26,688 or your builds will no longer be supported. 2023-05-13T21:09:26,689 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-05-13T21:09:26,689 ******************************************************************************** 2023-05-13T21:09:26,690 !! 2023-05-13T21:09:26,690 opt = self.warn_dash_deprecation(opt, section) 2023-05-13T21:09:26,691 warning: no files found matching 'abutils/tenx/*' 2023-05-13T21:09:26,692 adding license file 'LICENSE' 2023-05-13T21:09:26,702 writing manifest file '/tmp/pip-pip-egg-info-4cqxgjus/abutils.egg-info/SOURCES.txt' 2023-05-13T21:09:27,007 Preparing metadata (setup.py): finished with status 'done' 2023-05-13T21:09:27,020 Source in /tmp/pip-wheel-2yyca18q/abutils_82e271e3bf35403ba23ce7e59715fae4 has version 0.3.0, which satisfies requirement abutils==0.3.0 from https://files.pythonhosted.org/packages/13/fc/afc4bbc66213912ee11b40a8ea571270b317c4367b5f28c523f6c3d4858f/abutils-0.3.0.tar.gz 2023-05-13T21:09:27,022 Removed abutils==0.3.0 from https://files.pythonhosted.org/packages/13/fc/afc4bbc66213912ee11b40a8ea571270b317c4367b5f28c523f6c3d4858f/abutils-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-8zdyn9x9' 2023-05-13T21:09:27,035 Created temporary directory: /tmp/pip-unpack-b239ce3q 2023-05-13T21:09:27,037 Building wheels for collected packages: abutils 2023-05-13T21:09:27,047 Created temporary directory: /tmp/pip-wheel-b10edruo 2023-05-13T21:09:27,047 Building wheel for abutils (setup.py): started 2023-05-13T21:09:27,049 Destination directory: /tmp/pip-wheel-b10edruo 2023-05-13T21:09:27,050 Running command python setup.py bdist_wheel 2023-05-13T21:09:30,033 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-05-13T21:09:30,035 !! 2023-05-13T21:09:30,035 ******************************************************************************** 2023-05-13T21:09:30,036 Usage of dash-separated 'description-file' will not be supported in future 2023-05-13T21:09:30,036 versions. Please use the underscore name 'description_file' instead. 2023-05-13T21:09:30,037 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-05-13T21:09:30,037 or your builds will no longer be supported. 2023-05-13T21:09:30,038 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-05-13T21:09:30,038 ******************************************************************************** 2023-05-13T21:09:30,039 !! 2023-05-13T21:09:30,039 opt = self.warn_dash_deprecation(opt, section) 2023-05-13T21:09:30,799 running bdist_wheel 2023-05-13T21:09:30,971 running build 2023-05-13T21:09:30,971 running build_py 2023-05-13T21:09:31,034 creating build 2023-05-13T21:09:31,035 creating build/lib 2023-05-13T21:09:31,036 creating build/lib/abutils 2023-05-13T21:09:31,038 copying abutils/tl.py -> build/lib/abutils 2023-05-13T21:09:31,042 copying abutils/pl.py -> build/lib/abutils 2023-05-13T21:09:31,045 copying abutils/__init__.py -> build/lib/abutils 2023-05-13T21:09:31,048 copying abutils/version.py -> build/lib/abutils 2023-05-13T21:09:31,051 copying abutils/io.py -> build/lib/abutils 2023-05-13T21:09:31,054 running egg_info 2023-05-13T21:09:31,700 writing abutils.egg-info/PKG-INFO 2023-05-13T21:09:31,703 writing dependency_links to abutils.egg-info/dependency_links.txt 2023-05-13T21:09:31,708 writing requirements to abutils.egg-info/requires.txt 2023-05-13T21:09:31,710 writing top-level names to abutils.egg-info/top_level.txt 2023-05-13T21:09:31,771 reading manifest file 'abutils.egg-info/SOURCES.txt' 2023-05-13T21:09:31,778 reading manifest template 'MANIFEST.in' 2023-05-13T21:09:31,789 warning: no files found matching 'abutils/tenx/*' 2023-05-13T21:09:31,794 adding license file 'LICENSE' 2023-05-13T21:09:31,807 writing manifest file 'abutils.egg-info/SOURCES.txt' 2023-05-13T21:09:31,812 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.bin' is absent from the `packages` configuration. 2023-05-13T21:09:31,812 !! 2023-05-13T21:09:31,813 ******************************************************************************** 2023-05-13T21:09:31,813 ############################ 2023-05-13T21:09:31,813 # Package would be ignored # 2023-05-13T21:09:31,814 ############################ 2023-05-13T21:09:31,814 Python recognizes 'abutils.bin' as an importable package[^1], 2023-05-13T21:09:31,815 but it is absent from setuptools' `packages` configuration. 2023-05-13T21:09:31,815 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T21:09:31,816 package, please make sure that 'abutils.bin' is explicitly added 2023-05-13T21:09:31,816 to the `packages` configuration field. 2023-05-13T21:09:31,816 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T21:09:31,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T21:09:31,817 instead of `find_packages(...)`/`find:`). 2023-05-13T21:09:31,818 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T21:09:31,818 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T21:09:31,819 If you don't want 'abutils.bin' to be distributed and are 2023-05-13T21:09:31,819 already explicitly excluding 'abutils.bin' via 2023-05-13T21:09:31,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T21:09:31,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T21:09:31,820 combination with a more fine grained `package-data` configuration. 2023-05-13T21:09:31,821 You can read more about "package data files" on setuptools documentation page: 2023-05-13T21:09:31,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T21:09:31,822 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T21:09:31,823 even if it does not contain any `.py` files. 2023-05-13T21:09:31,823 On the other hand, currently there is no concept of package data 2023-05-13T21:09:31,823 directory, all directories are treated like packages. 2023-05-13T21:09:31,823 ******************************************************************************** 2023-05-13T21:09:31,824 !! 2023-05-13T21:09:31,824 check.warn(importable) 2023-05-13T21:09:31,825 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.core' is absent from the `packages` configuration. 2023-05-13T21:09:31,825 !! 2023-05-13T21:09:31,826 ******************************************************************************** 2023-05-13T21:09:31,826 ############################ 2023-05-13T21:09:31,826 # Package would be ignored # 2023-05-13T21:09:31,827 ############################ 2023-05-13T21:09:31,827 Python recognizes 'abutils.core' as an importable package[^1], 2023-05-13T21:09:31,828 but it is absent from setuptools' `packages` configuration. 2023-05-13T21:09:31,829 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T21:09:31,829 package, please make sure that 'abutils.core' is explicitly added 2023-05-13T21:09:31,830 to the `packages` configuration field. 2023-05-13T21:09:31,830 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T21:09:31,830 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T21:09:31,831 instead of `find_packages(...)`/`find:`). 2023-05-13T21:09:31,832 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T21:09:31,832 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T21:09:31,833 If you don't want 'abutils.core' to be distributed and are 2023-05-13T21:09:31,834 already explicitly excluding 'abutils.core' via 2023-05-13T21:09:31,834 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T21:09:31,835 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T21:09:31,835 combination with a more fine grained `package-data` configuration. 2023-05-13T21:09:31,836 You can read more about "package data files" on setuptools documentation page: 2023-05-13T21:09:31,838 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T21:09:31,840 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T21:09:31,841 even if it does not contain any `.py` files. 2023-05-13T21:09:31,841 On the other hand, currently there is no concept of package data 2023-05-13T21:09:31,841 directory, all directories are treated like packages. 2023-05-13T21:09:31,842 ******************************************************************************** 2023-05-13T21:09:31,842 !! 2023-05-13T21:09:31,844 check.warn(importable) 2023-05-13T21:09:31,844 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.plots' is absent from the `packages` configuration. 2023-05-13T21:09:31,845 !! 2023-05-13T21:09:31,846 ******************************************************************************** 2023-05-13T21:09:31,847 ############################ 2023-05-13T21:09:31,847 # Package would be ignored # 2023-05-13T21:09:31,847 ############################ 2023-05-13T21:09:31,848 Python recognizes 'abutils.plots' as an importable package[^1], 2023-05-13T21:09:31,848 but it is absent from setuptools' `packages` configuration. 2023-05-13T21:09:31,849 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T21:09:31,849 package, please make sure that 'abutils.plots' is explicitly added 2023-05-13T21:09:31,850 to the `packages` configuration field. 2023-05-13T21:09:31,850 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T21:09:31,851 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T21:09:31,851 instead of `find_packages(...)`/`find:`). 2023-05-13T21:09:31,852 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T21:09:31,853 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T21:09:31,853 If you don't want 'abutils.plots' to be distributed and are 2023-05-13T21:09:31,854 already explicitly excluding 'abutils.plots' via 2023-05-13T21:09:31,854 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T21:09:31,854 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T21:09:31,855 combination with a more fine grained `package-data` configuration. 2023-05-13T21:09:31,855 You can read more about "package data files" on setuptools documentation page: 2023-05-13T21:09:31,856 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T21:09:31,857 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T21:09:31,858 even if it does not contain any `.py` files. 2023-05-13T21:09:31,858 On the other hand, currently there is no concept of package data 2023-05-13T21:09:31,858 directory, all directories are treated like packages. 2023-05-13T21:09:31,859 ******************************************************************************** 2023-05-13T21:09:31,859 !! 2023-05-13T21:09:31,860 check.warn(importable) 2023-05-13T21:09:31,860 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.tools' is absent from the `packages` configuration. 2023-05-13T21:09:31,861 !! 2023-05-13T21:09:31,862 ******************************************************************************** 2023-05-13T21:09:31,862 ############################ 2023-05-13T21:09:31,862 # Package would be ignored # 2023-05-13T21:09:31,863 ############################ 2023-05-13T21:09:31,863 Python recognizes 'abutils.tools' as an importable package[^1], 2023-05-13T21:09:31,863 but it is absent from setuptools' `packages` configuration. 2023-05-13T21:09:31,864 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T21:09:31,864 package, please make sure that 'abutils.tools' is explicitly added 2023-05-13T21:09:31,865 to the `packages` configuration field. 2023-05-13T21:09:31,865 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T21:09:31,866 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T21:09:31,866 instead of `find_packages(...)`/`find:`). 2023-05-13T21:09:31,867 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T21:09:31,867 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T21:09:31,868 If you don't want 'abutils.tools' to be distributed and are 2023-05-13T21:09:31,868 already explicitly excluding 'abutils.tools' via 2023-05-13T21:09:31,868 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T21:09:31,869 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T21:09:31,869 combination with a more fine grained `package-data` configuration. 2023-05-13T21:09:31,871 You can read more about "package data files" on setuptools documentation page: 2023-05-13T21:09:31,872 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T21:09:31,873 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T21:09:31,873 even if it does not contain any `.py` files. 2023-05-13T21:09:31,874 On the other hand, currently there is no concept of package data 2023-05-13T21:09:31,874 directory, all directories are treated like packages. 2023-05-13T21:09:31,875 ******************************************************************************** 2023-05-13T21:09:31,877 !! 2023-05-13T21:09:31,877 check.warn(importable) 2023-05-13T21:09:31,877 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.utils' is absent from the `packages` configuration. 2023-05-13T21:09:31,878 !! 2023-05-13T21:09:31,879 ******************************************************************************** 2023-05-13T21:09:31,879 ############################ 2023-05-13T21:09:31,880 # Package would be ignored # 2023-05-13T21:09:31,880 ############################ 2023-05-13T21:09:31,880 Python recognizes 'abutils.utils' as an importable package[^1], 2023-05-13T21:09:31,881 but it is absent from setuptools' `packages` configuration. 2023-05-13T21:09:31,881 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T21:09:31,882 package, please make sure that 'abutils.utils' is explicitly added 2023-05-13T21:09:31,882 to the `packages` configuration field. 2023-05-13T21:09:31,882 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T21:09:31,883 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T21:09:31,883 instead of `find_packages(...)`/`find:`). 2023-05-13T21:09:31,884 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T21:09:31,885 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T21:09:31,885 If you don't want 'abutils.utils' to be distributed and are 2023-05-13T21:09:31,886 already explicitly excluding 'abutils.utils' via 2023-05-13T21:09:31,886 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T21:09:31,886 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T21:09:31,886 combination with a more fine grained `package-data` configuration. 2023-05-13T21:09:31,887 You can read more about "package data files" on setuptools documentation page: 2023-05-13T21:09:31,888 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T21:09:31,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T21:09:31,889 even if it does not contain any `.py` files. 2023-05-13T21:09:31,889 On the other hand, currently there is no concept of package data 2023-05-13T21:09:31,890 directory, all directories are treated like packages. 2023-05-13T21:09:31,890 ******************************************************************************** 2023-05-13T21:09:31,890 !! 2023-05-13T21:09:31,891 check.warn(importable) 2023-05-13T21:09:31,892 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.utils.matrices' is absent from the `packages` configuration. 2023-05-13T21:09:31,893 !! 2023-05-13T21:09:31,893 ******************************************************************************** 2023-05-13T21:09:31,894 ############################ 2023-05-13T21:09:31,894 # Package would be ignored # 2023-05-13T21:09:31,894 ############################ 2023-05-13T21:09:31,895 Python recognizes 'abutils.utils.matrices' as an importable package[^1], 2023-05-13T21:09:31,896 but it is absent from setuptools' `packages` configuration. 2023-05-13T21:09:31,897 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-13T21:09:31,897 package, please make sure that 'abutils.utils.matrices' is explicitly added 2023-05-13T21:09:31,898 to the `packages` configuration field. 2023-05-13T21:09:31,899 Alternatively, you can also rely on setuptools' discovery methods 2023-05-13T21:09:31,900 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-13T21:09:31,900 instead of `find_packages(...)`/`find:`). 2023-05-13T21:09:31,901 You can read more about "package discovery" on setuptools documentation page: 2023-05-13T21:09:31,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-13T21:09:31,903 If you don't want 'abutils.utils.matrices' to be distributed and are 2023-05-13T21:09:31,903 already explicitly excluding 'abutils.utils.matrices' via 2023-05-13T21:09:31,904 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-13T21:09:31,904 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-13T21:09:31,905 combination with a more fine grained `package-data` configuration. 2023-05-13T21:09:31,906 You can read more about "package data files" on setuptools documentation page: 2023-05-13T21:09:31,907 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-13T21:09:31,908 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-13T21:09:31,908 even if it does not contain any `.py` files. 2023-05-13T21:09:31,908 On the other hand, currently there is no concept of package data 2023-05-13T21:09:31,909 directory, all directories are treated like packages. 2023-05-13T21:09:31,909 ******************************************************************************** 2023-05-13T21:09:31,910 !! 2023-05-13T21:09:31,910 check.warn(importable) 2023-05-13T21:09:31,910 creating build/lib/abutils/bin 2023-05-13T21:09:31,911 copying abutils/bin/cdhit_darwin -> build/lib/abutils/bin 2023-05-13T21:09:31,911 copying abutils/bin/cdhit_linux -> build/lib/abutils/bin 2023-05-13T21:09:31,911 copying abutils/bin/fasttree_darwin -> build/lib/abutils/bin 2023-05-13T21:09:31,912 copying abutils/bin/fasttree_linux -> build/lib/abutils/bin 2023-05-13T21:09:31,912 copying abutils/bin/mafft_darwin -> build/lib/abutils/bin 2023-05-13T21:09:31,919 copying abutils/bin/mafft_linux -> build/lib/abutils/bin 2023-05-13T21:09:31,929 copying abutils/bin/mmseqs_darwin -> build/lib/abutils/bin 2023-05-13T21:09:32,213 copying abutils/bin/mmseqs_linux -> build/lib/abutils/bin 2023-05-13T21:09:34,031 copying abutils/bin/muscle3_darwin -> build/lib/abutils/bin 2023-05-13T21:09:34,060 copying abutils/bin/muscle3_linux -> build/lib/abutils/bin 2023-05-13T21:09:34,083 copying abutils/bin/muscle_darwin -> build/lib/abutils/bin 2023-05-13T21:09:34,140 copying abutils/bin/muscle_linux -> build/lib/abutils/bin 2023-05-13T21:09:34,288 copying abutils/bin/vsearch_darwin -> build/lib/abutils/bin 2023-05-13T21:09:34,318 copying abutils/bin/vsearch_linux -> build/lib/abutils/bin 2023-05-13T21:09:34,425 creating build/lib/abutils/core 2023-05-13T21:09:34,427 copying abutils/core/__init__.py -> build/lib/abutils/core 2023-05-13T21:09:34,432 copying abutils/core/lineage.py -> build/lib/abutils/core 2023-05-13T21:09:34,441 copying abutils/core/pair.py -> build/lib/abutils/core 2023-05-13T21:09:34,448 copying abutils/core/sequence.py -> build/lib/abutils/core 2023-05-13T21:09:34,454 creating build/lib/abutils/plots 2023-05-13T21:09:34,457 copying abutils/plots/__init__.py -> build/lib/abutils/plots 2023-05-13T21:09:34,462 copying abutils/plots/bar.py -> build/lib/abutils/plots 2023-05-13T21:09:34,687 copying abutils/plots/base.py -> build/lib/abutils/plots 2023-05-13T21:09:34,691 copying abutils/plots/data.py -> build/lib/abutils/plots 2023-05-13T21:09:34,696 copying abutils/plots/donut.py -> build/lib/abutils/plots 2023-05-13T21:09:34,702 copying abutils/plots/heatmap.py -> build/lib/abutils/plots 2023-05-13T21:09:34,706 copying abutils/plots/kde.py -> build/lib/abutils/plots 2023-05-13T21:09:34,715 copying abutils/plots/lineage.py -> build/lib/abutils/plots 2023-05-13T21:09:34,719 copying abutils/plots/ridge.py -> build/lib/abutils/plots 2023-05-13T21:09:34,725 copying abutils/plots/ring.py -> build/lib/abutils/plots 2023-05-13T21:09:34,729 copying abutils/plots/scatter.py -> build/lib/abutils/plots 2023-05-13T21:09:34,735 copying abutils/plots/summary.py -> build/lib/abutils/plots 2023-05-13T21:09:34,740 copying abutils/plots/utils.py -> build/lib/abutils/plots 2023-05-13T21:09:34,744 creating build/lib/abutils/tools 2023-05-13T21:09:34,746 copying abutils/tools/__init__.py -> build/lib/abutils/tools 2023-05-13T21:09:34,750 copying abutils/tools/alignment.py -> build/lib/abutils/tools 2023-05-13T21:09:34,757 copying abutils/tools/clonify.py -> build/lib/abutils/tools 2023-05-13T21:09:34,762 copying abutils/tools/cluster.py -> build/lib/abutils/tools 2023-05-13T21:09:34,767 copying abutils/tools/phylo.py -> build/lib/abutils/tools 2023-05-13T21:09:34,773 creating build/lib/abutils/utils 2023-05-13T21:09:34,775 copying abutils/utils/__init__.py -> build/lib/abutils/utils 2023-05-13T21:09:34,780 copying abutils/utils/alignment.py -> build/lib/abutils/utils 2023-05-13T21:09:34,789 copying abutils/utils/circos.py -> build/lib/abutils/utils 2023-05-13T21:09:34,793 copying abutils/utils/cluster.py -> build/lib/abutils/utils 2023-05-13T21:09:34,800 copying abutils/utils/codons.py -> build/lib/abutils/utils 2023-05-13T21:09:34,804 copying abutils/utils/color.py -> build/lib/abutils/utils 2023-05-13T21:09:34,809 copying abutils/utils/convert.py -> build/lib/abutils/utils 2023-05-13T21:09:34,813 copying abutils/utils/database.py -> build/lib/abutils/utils 2023-05-13T21:09:34,818 copying abutils/utils/decorators.py -> build/lib/abutils/utils 2023-05-13T21:09:34,822 copying abutils/utils/germlines.py -> build/lib/abutils/utils 2023-05-13T21:09:34,827 copying abutils/utils/jobs.py -> build/lib/abutils/utils 2023-05-13T21:09:34,832 copying abutils/utils/log.py -> build/lib/abutils/utils 2023-05-13T21:09:34,836 copying abutils/utils/mongodb.py -> build/lib/abutils/utils 2023-05-13T21:09:34,841 copying abutils/utils/phylogeny.py -> build/lib/abutils/utils 2023-05-13T21:09:34,847 copying abutils/utils/pipeline.py -> build/lib/abutils/utils 2023-05-13T21:09:34,852 copying abutils/utils/progbar.py -> build/lib/abutils/utils 2023-05-13T21:09:34,856 copying abutils/utils/s3.py -> build/lib/abutils/utils 2023-05-13T21:09:34,861 copying abutils/utils/seqio.py -> build/lib/abutils/utils 2023-05-13T21:09:34,866 copying abutils/utils/ssh_tunnel.py -> build/lib/abutils/utils 2023-05-13T21:09:34,871 copying abutils/utils/utilities.py -> build/lib/abutils/utils 2023-05-13T21:09:34,875 creating build/lib/abutils/utils/matrices 2023-05-13T21:09:34,876 copying abutils/utils/matrices/blosum62 -> build/lib/abutils/utils/matrices 2023-05-13T21:09:34,881 copying abutils/utils/matrices/match1mismatch0 -> build/lib/abutils/utils/matrices 2023-05-13T21:09:34,885 copying abutils/utils/matrices/match3mismatch2 -> build/lib/abutils/utils/matrices 2023-05-13T21:09:34,948 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-13T21:09:34,948 !! 2023-05-13T21:09:34,949 ******************************************************************************** 2023-05-13T21:09:34,949 Please avoid running ``setup.py`` directly. 2023-05-13T21:09:34,950 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-13T21:09:34,950 other standards-based tools. 2023-05-13T21:09:34,951 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-13T21:09:34,951 ******************************************************************************** 2023-05-13T21:09:34,952 !! 2023-05-13T21:09:34,952 self.initialize_options() 2023-05-13T21:09:35,014 installing to build/bdist.linux-armv7l/wheel 2023-05-13T21:09:35,015 running install 2023-05-13T21:09:35,075 running install_lib 2023-05-13T21:09:35,136 creating build/bdist.linux-armv7l 2023-05-13T21:09:35,137 creating build/bdist.linux-armv7l/wheel 2023-05-13T21:09:35,141 creating build/bdist.linux-armv7l/wheel/abutils 2023-05-13T21:09:35,144 creating build/bdist.linux-armv7l/wheel/abutils/core 2023-05-13T21:09:35,146 copying build/lib/abutils/core/sequence.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-05-13T21:09:35,151 copying build/lib/abutils/core/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-05-13T21:09:35,157 copying build/lib/abutils/core/pair.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-05-13T21:09:35,163 copying build/lib/abutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-05-13T21:09:35,167 creating build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,169 copying build/lib/abutils/plots/summary.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,173 copying build/lib/abutils/plots/kde.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,180 copying build/lib/abutils/plots/ridge.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,185 copying build/lib/abutils/plots/scatter.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,191 copying build/lib/abutils/plots/base.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,194 copying build/lib/abutils/plots/bar.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,199 copying build/lib/abutils/plots/donut.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,205 copying build/lib/abutils/plots/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,209 copying build/lib/abutils/plots/utils.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,213 copying build/lib/abutils/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,216 copying build/lib/abutils/plots/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,220 copying build/lib/abutils/plots/ring.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,224 copying build/lib/abutils/plots/data.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-05-13T21:09:35,230 creating build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,232 copying build/lib/abutils/bin/vsearch_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,337 copying build/lib/abutils/bin/mmseqs_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,629 copying build/lib/abutils/bin/cdhit_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,640 copying build/lib/abutils/bin/muscle3_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,663 copying build/lib/abutils/bin/fasttree_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,685 copying build/lib/abutils/bin/mafft_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,695 copying build/lib/abutils/bin/muscle3_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,719 copying build/lib/abutils/bin/muscle_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,831 copying build/lib/abutils/bin/vsearch_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,860 copying build/lib/abutils/bin/muscle_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,915 copying build/lib/abutils/bin/cdhit_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,925 copying build/lib/abutils/bin/mafft_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:35,933 copying build/lib/abutils/bin/mmseqs_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:37,703 copying build/lib/abutils/bin/fasttree_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-05-13T21:09:37,721 copying build/lib/abutils/tl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-05-13T21:09:37,727 creating build/bdist.linux-armv7l/wheel/abutils/tools 2023-05-13T21:09:37,729 copying build/lib/abutils/tools/clonify.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-05-13T21:09:37,734 copying build/lib/abutils/tools/phylo.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-05-13T21:09:37,741 copying build/lib/abutils/tools/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-05-13T21:09:37,747 copying build/lib/abutils/tools/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-05-13T21:09:37,751 copying build/lib/abutils/tools/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-05-13T21:09:37,758 copying build/lib/abutils/pl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-05-13T21:09:37,764 creating build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:37,767 copying build/lib/abutils/utils/jobs.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:37,771 copying build/lib/abutils/utils/circos.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:37,775 copying build/lib/abutils/utils/ssh_tunnel.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:37,997 copying build/lib/abutils/utils/mongodb.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,002 copying build/lib/abutils/utils/germlines.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,008 copying build/lib/abutils/utils/decorators.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,012 copying build/lib/abutils/utils/pipeline.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,017 copying build/lib/abutils/utils/database.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,023 copying build/lib/abutils/utils/codons.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,028 creating build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-05-13T21:09:38,030 copying build/lib/abutils/utils/matrices/match3mismatch2 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-05-13T21:09:38,034 copying build/lib/abutils/utils/matrices/blosum62 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-05-13T21:09:38,038 copying build/lib/abutils/utils/matrices/match1mismatch0 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-05-13T21:09:38,042 copying build/lib/abutils/utils/convert.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,046 copying build/lib/abutils/utils/s3.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,050 copying build/lib/abutils/utils/phylogeny.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,058 copying build/lib/abutils/utils/color.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,063 copying build/lib/abutils/utils/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,071 copying build/lib/abutils/utils/log.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,075 copying build/lib/abutils/utils/utilities.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,078 copying build/lib/abutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,082 copying build/lib/abutils/utils/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,093 copying build/lib/abutils/utils/seqio.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,098 copying build/lib/abutils/utils/progbar.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-05-13T21:09:38,102 copying build/lib/abutils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils 2023-05-13T21:09:38,105 copying build/lib/abutils/version.py -> build/bdist.linux-armv7l/wheel/abutils 2023-05-13T21:09:38,109 copying build/lib/abutils/io.py -> build/bdist.linux-armv7l/wheel/abutils 2023-05-13T21:09:38,112 running install_egg_info 2023-05-13T21:09:38,176 Copying abutils.egg-info to build/bdist.linux-armv7l/wheel/abutils-0.3.0-py3.7.egg-info 2023-05-13T21:09:38,198 running install_scripts 2023-05-13T21:09:38,242 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-05-13T21:09:38,250 creating build/bdist.linux-armv7l/wheel/abutils-0.3.0.dist-info/WHEEL 2023-05-13T21:09:38,256 creating '/tmp/pip-wheel-b10edruo/abutils-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-13T21:09:38,261 adding 'abutils/__init__.py' 2023-05-13T21:09:38,264 adding 'abutils/io.py' 2023-05-13T21:09:38,267 adding 'abutils/pl.py' 2023-05-13T21:09:38,270 adding 'abutils/tl.py' 2023-05-13T21:09:38,272 adding 'abutils/version.py' 2023-05-13T21:09:38,343 adding 'abutils/bin/cdhit_darwin' 2023-05-13T21:09:38,403 adding 'abutils/bin/cdhit_linux' 2023-05-13T21:09:38,508 adding 'abutils/bin/fasttree_darwin' 2023-05-13T21:09:38,685 adding 'abutils/bin/fasttree_linux' 2023-05-13T21:09:38,716 adding 'abutils/bin/mafft_darwin' 2023-05-13T21:09:38,738 adding 'abutils/bin/mafft_linux' 2023-05-13T21:09:41,571 adding 'abutils/bin/mmseqs_darwin' 2023-05-13T21:09:59,523 adding 'abutils/bin/mmseqs_linux' 2023-05-13T21:10:00,632 adding 'abutils/bin/muscle3_darwin' 2023-05-13T21:10:00,794 adding 'abutils/bin/muscle3_linux' 2023-05-13T21:10:01,248 adding 'abutils/bin/muscle_darwin' 2023-05-13T21:10:02,554 adding 'abutils/bin/muscle_linux' 2023-05-13T21:10:02,800 adding 'abutils/bin/vsearch_darwin' 2023-05-13T21:10:03,600 adding 'abutils/bin/vsearch_linux' 2023-05-13T21:10:03,644 adding 'abutils/core/__init__.py' 2023-05-13T21:10:03,656 adding 'abutils/core/lineage.py' 2023-05-13T21:10:03,664 adding 'abutils/core/pair.py' 2023-05-13T21:10:03,671 adding 'abutils/core/sequence.py' 2023-05-13T21:10:03,676 adding 'abutils/plots/__init__.py' 2023-05-13T21:10:03,680 adding 'abutils/plots/bar.py' 2023-05-13T21:10:03,684 adding 'abutils/plots/base.py' 2023-05-13T21:10:03,688 adding 'abutils/plots/data.py' 2023-05-13T21:10:03,695 adding 'abutils/plots/donut.py' 2023-05-13T21:10:03,698 adding 'abutils/plots/heatmap.py' 2023-05-13T21:10:03,712 adding 'abutils/plots/kde.py' 2023-05-13T21:10:03,717 adding 'abutils/plots/lineage.py' 2023-05-13T21:10:03,722 adding 'abutils/plots/ridge.py' 2023-05-13T21:10:03,725 adding 'abutils/plots/ring.py' 2023-05-13T21:10:03,733 adding 'abutils/plots/scatter.py' 2023-05-13T21:10:03,737 adding 'abutils/plots/summary.py' 2023-05-13T21:10:03,740 adding 'abutils/plots/utils.py' 2023-05-13T21:10:03,743 adding 'abutils/tools/__init__.py' 2023-05-13T21:10:03,754 adding 'abutils/tools/alignment.py' 2023-05-13T21:10:03,759 adding 'abutils/tools/clonify.py' 2023-05-13T21:10:03,765 adding 'abutils/tools/cluster.py' 2023-05-13T21:10:03,774 adding 'abutils/tools/phylo.py' 2023-05-13T21:10:03,779 adding 'abutils/utils/__init__.py' 2023-05-13T21:10:03,797 adding 'abutils/utils/alignment.py' 2023-05-13T21:10:03,801 adding 'abutils/utils/circos.py' 2023-05-13T21:10:03,812 adding 'abutils/utils/cluster.py' 2023-05-13T21:10:03,815 adding 'abutils/utils/codons.py' 2023-05-13T21:10:03,820 adding 'abutils/utils/color.py' 2023-05-13T21:10:03,823 adding 'abutils/utils/convert.py' 2023-05-13T21:10:03,827 adding 'abutils/utils/database.py' 2023-05-13T21:10:03,831 adding 'abutils/utils/decorators.py' 2023-05-13T21:10:03,836 adding 'abutils/utils/germlines.py' 2023-05-13T21:10:03,839 adding 'abutils/utils/jobs.py' 2023-05-13T21:10:03,842 adding 'abutils/utils/log.py' 2023-05-13T21:10:03,847 adding 'abutils/utils/mongodb.py' 2023-05-13T21:10:03,858 adding 'abutils/utils/phylogeny.py' 2023-05-13T21:10:03,862 adding 'abutils/utils/pipeline.py' 2023-05-13T21:10:03,865 adding 'abutils/utils/progbar.py' 2023-05-13T21:10:03,869 adding 'abutils/utils/s3.py' 2023-05-13T21:10:03,873 adding 'abutils/utils/seqio.py' 2023-05-13T21:10:03,877 adding 'abutils/utils/ssh_tunnel.py' 2023-05-13T21:10:03,879 adding 'abutils/utils/utilities.py' 2023-05-13T21:10:03,884 adding 'abutils/utils/matrices/blosum62' 2023-05-13T21:10:03,886 adding 'abutils/utils/matrices/match1mismatch0' 2023-05-13T21:10:03,889 adding 'abutils/utils/matrices/match3mismatch2' 2023-05-13T21:10:03,893 adding 'abutils-0.3.0.dist-info/LICENSE' 2023-05-13T21:10:03,896 adding 'abutils-0.3.0.dist-info/METADATA' 2023-05-13T21:10:03,898 adding 'abutils-0.3.0.dist-info/WHEEL' 2023-05-13T21:10:03,900 adding 'abutils-0.3.0.dist-info/top_level.txt' 2023-05-13T21:10:03,902 adding 'abutils-0.3.0.dist-info/RECORD' 2023-05-13T21:10:04,442 removing build/bdist.linux-armv7l/wheel 2023-05-13T21:10:04,855 Building wheel for abutils (setup.py): finished with status 'done' 2023-05-13T21:10:05,465 Created wheel for abutils: filename=abutils-0.3.0-py3-none-any.whl size=20379271 sha256=4260a96c149498cd519f4d6dbcbb5075a0b7cd820b16bec4cd6eafe452f6e7a6 2023-05-13T21:10:05,467 Stored in directory: /tmp/pip-ephem-wheel-cache-kuc_mg67/wheels/97/87/60/833e247ef430d9905859871f8818a759661c112ae4f91acd95 2023-05-13T21:10:05,521 Successfully built abutils 2023-05-13T21:10:06,973 Removed build tracker: '/tmp/pip-build-tracker-8zdyn9x9'