2023-05-14T02:09:05,952 Created temporary directory: /tmp/pip-build-tracker-u3j70nn_
2023-05-14T02:09:05,955 Initialized build tracking at /tmp/pip-build-tracker-u3j70nn_
2023-05-14T02:09:05,955 Created build tracker: /tmp/pip-build-tracker-u3j70nn_
2023-05-14T02:09:05,955 Entered build tracker: /tmp/pip-build-tracker-u3j70nn_
2023-05-14T02:09:05,956 Created temporary directory: /tmp/pip-wheel-q0q9aqyz
2023-05-14T02:09:05,965 Created temporary directory: /tmp/pip-ephem-wheel-cache-3sf9qo3w
2023-05-14T02:09:06,016 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-14T02:09:06,024 2 location(s) to search for versions of zol:
2023-05-14T02:09:06,024 * https://pypi.org/simple/zol/
2023-05-14T02:09:06,024 * https://www.piwheels.org/simple/zol/
2023-05-14T02:09:06,025 Fetching project page and analyzing links: https://pypi.org/simple/zol/
2023-05-14T02:09:06,026 Getting page https://pypi.org/simple/zol/
2023-05-14T02:09:06,031 Found index url https://pypi.org/simple/
2023-05-14T02:09:06,137 Fetched page https://pypi.org/simple/zol/ as application/vnd.pypi.simple.v1+json
2023-05-14T02:09:06,141   Skipping link: No binaries permitted for zol: https://files.pythonhosted.org/packages/2d/1c/437ee8029ba5e247def65a52837d3678b70276c97aabe0c05ed4d65c9bd3/zol-1.2-py3-none-any.whl (from https://pypi.org/simple/zol/)
2023-05-14T02:09:06,141   Found link https://files.pythonhosted.org/packages/b2/77/86157ae4b699725985561897c8ed3db4390510fb2860014d2898aa1af098/zol-1.2.tar.gz (from https://pypi.org/simple/zol/), version: 1.2
2023-05-14T02:09:06,142   Skipping link: No binaries permitted for zol: https://files.pythonhosted.org/packages/e0/b4/4493087ccc7c49f3c4e3db4eb8242d07305dd19c24bbf323fa170c691d93/zol-1.2.1-py3-none-any.whl (from https://pypi.org/simple/zol/)
2023-05-14T02:09:06,142   Found link https://files.pythonhosted.org/packages/6e/cc/e0dca5f9b8a0dffc13af71f02526f51d1d87a47266372776c0c1575c34cf/zol-1.2.1.tar.gz (from https://pypi.org/simple/zol/), version: 1.2.1
2023-05-14T02:09:06,143 Fetching project page and analyzing links: https://www.piwheels.org/simple/zol/
2023-05-14T02:09:06,144 Getting page https://www.piwheels.org/simple/zol/
2023-05-14T02:09:06,146 Found index url https://www.piwheels.org/simple/
2023-05-14T02:09:06,379 Fetched page https://www.piwheels.org/simple/zol/ as text/html
2023-05-14T02:09:06,382   Skipping link: No binaries permitted for zol: https://www.piwheels.org/simple/zol/zol-1.2-py3-none-any.whl#sha256=ee5eba8ae7cd5e8bee820570b2664bf9e8c9d2aca7050cda48effb2317d89c74 (from https://www.piwheels.org/simple/zol/)
2023-05-14T02:09:06,383 Skipping link: not a file: https://www.piwheels.org/simple/zol/
2023-05-14T02:09:06,383 Skipping link: not a file: https://pypi.org/simple/zol/
2023-05-14T02:09:06,416 Given no hashes to check 1 links for project 'zol': discarding no candidates
2023-05-14T02:09:06,447 Collecting zol==1.2.1
2023-05-14T02:09:06,452   Created temporary directory: /tmp/pip-unpack-127_mvt8
2023-05-14T02:09:06,547   Downloading zol-1.2.1.tar.gz (79 kB)
2023-05-14T02:09:06,758   Added zol==1.2.1 from https://files.pythonhosted.org/packages/6e/cc/e0dca5f9b8a0dffc13af71f02526f51d1d87a47266372776c0c1575c34cf/zol-1.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-u3j70nn_'
2023-05-14T02:09:06,763   Running setup.py (path:/tmp/pip-wheel-q0q9aqyz/zol_6126739a23cd483da5efb5104188ab6e/setup.py) egg_info for package zol
2023-05-14T02:09:06,764   Created temporary directory: /tmp/pip-pip-egg-info-bnzagij6
2023-05-14T02:09:06,764   Preparing metadata (setup.py): started
2023-05-14T02:09:06,767   Running command python setup.py egg_info
2023-05-14T02:09:08,244   running egg_info
2023-05-14T02:09:08,256   creating /tmp/pip-pip-egg-info-bnzagij6/zol.egg-info
2023-05-14T02:09:08,316   writing /tmp/pip-pip-egg-info-bnzagij6/zol.egg-info/PKG-INFO
2023-05-14T02:09:08,322   writing dependency_links to /tmp/pip-pip-egg-info-bnzagij6/zol.egg-info/dependency_links.txt
2023-05-14T02:09:08,328   writing top-level names to /tmp/pip-pip-egg-info-bnzagij6/zol.egg-info/top_level.txt
2023-05-14T02:09:08,331   writing manifest file '/tmp/pip-pip-egg-info-bnzagij6/zol.egg-info/SOURCES.txt'
2023-05-14T02:09:08,590   reading manifest file '/tmp/pip-pip-egg-info-bnzagij6/zol.egg-info/SOURCES.txt'
2023-05-14T02:09:08,594   adding license file 'LICENSE'
2023-05-14T02:09:08,599   writing manifest file '/tmp/pip-pip-egg-info-bnzagij6/zol.egg-info/SOURCES.txt'
2023-05-14T02:09:08,642   g++: error: zol/orthologs/runRBH.cpp: No such file or directory
2023-05-14T02:09:08,645   g++: fatal error: no input files
2023-05-14T02:09:08,645   compilation terminated.
2023-05-14T02:09:08,667   g++: error: zol/orthologs/splitDiamondResults.cpp: No such file or directory
2023-05-14T02:09:08,668   g++: fatal error: no input files
2023-05-14T02:09:08,668   compilation terminated.
2023-05-14T02:09:08,689   g++: error: zol/splitDiamondResultsForFai.cpp: No such file or directory
2023-05-14T02:09:08,691   g++: fatal error: no input files
2023-05-14T02:09:08,691   compilation terminated.
2023-05-14T02:09:08,826   Preparing metadata (setup.py): finished with status 'done'
2023-05-14T02:09:08,837   Source in /tmp/pip-wheel-q0q9aqyz/zol_6126739a23cd483da5efb5104188ab6e has version 1.2.1, which satisfies requirement zol==1.2.1 from https://files.pythonhosted.org/packages/6e/cc/e0dca5f9b8a0dffc13af71f02526f51d1d87a47266372776c0c1575c34cf/zol-1.2.1.tar.gz
2023-05-14T02:09:08,839   Removed zol==1.2.1 from https://files.pythonhosted.org/packages/6e/cc/e0dca5f9b8a0dffc13af71f02526f51d1d87a47266372776c0c1575c34cf/zol-1.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-u3j70nn_'
2023-05-14T02:09:08,847 Created temporary directory: /tmp/pip-unpack-8ejjurbp
2023-05-14T02:09:08,849 Building wheels for collected packages: zol
2023-05-14T02:09:08,857   Created temporary directory: /tmp/pip-wheel-05jehzvj
2023-05-14T02:09:08,858   Building wheel for zol (setup.py): started
2023-05-14T02:09:08,860   Destination directory: /tmp/pip-wheel-05jehzvj
2023-05-14T02:09:08,860   Running command python setup.py bdist_wheel
2023-05-14T02:09:10,363   running bdist_wheel
2023-05-14T02:09:11,053   running build
2023-05-14T02:09:11,053   running build_py
2023-05-14T02:09:11,121   creating build
2023-05-14T02:09:11,122   creating build/lib
2023-05-14T02:09:11,124   creating build/lib/zol
2023-05-14T02:09:11,126   copying zol/zol.py -> build/lib/zol
2023-05-14T02:09:11,135   copying zol/util.py -> build/lib/zol
2023-05-14T02:09:11,141   copying zol/__init__.py -> build/lib/zol
2023-05-14T02:09:11,144   copying zol/fai.py -> build/lib/zol
2023-05-14T02:09:11,153   running build_scripts
2023-05-14T02:09:11,154   creating build/scripts-3.7
2023-05-14T02:09:11,157   copying and adjusting bin/zol -> build/scripts-3.7
2023-05-14T02:09:11,165   copying and adjusting bin/fai -> build/scripts-3.7
2023-05-14T02:09:11,172   copying and adjusting bin/prepTG -> build/scripts-3.7
2023-05-14T02:09:11,178   copying and adjusting scripts/runProdigalAndMakeProperGenbank.py -> build/scripts-3.7
2023-05-14T02:09:11,182   copying and adjusting scripts/listAllGenomesInDirectory.py -> build/scripts-3.7
2023-05-14T02:09:11,188   copying scripts/setup_annotation_dbs.py -> build/scripts-3.7
2023-05-14T02:09:11,194   copying and adjusting scripts/processNCBIGenBank.py -> build/scripts-3.7
2023-05-14T02:09:11,199   copying and adjusting scripts/extractBiG-SCAPEclusters.py -> build/scripts-3.7
2023-05-14T02:09:11,203   copying and adjusting zol/orthologs/findOrthologs.py -> build/scripts-3.7
2023-05-14T02:09:11,210   copying scripts/generateSyntenicVisual.py -> build/scripts-3.7
2023-05-14T02:09:11,215   copying and adjusting scripts/convertMiniprotGffToGbkAndProt.py -> build/scripts-3.7
2023-05-14T02:09:11,220   copying scripts/expandDereplicatedAlignment.py -> build/scripts-3.7
2023-05-14T02:09:11,224   changing mode of build/scripts-3.7/zol from 644 to 755
2023-05-14T02:09:11,225   changing mode of build/scripts-3.7/fai from 644 to 755
2023-05-14T02:09:11,226   changing mode of build/scripts-3.7/prepTG from 644 to 755
2023-05-14T02:09:11,226   changing mode of build/scripts-3.7/runProdigalAndMakeProperGenbank.py from 644 to 755
2023-05-14T02:09:11,227   changing mode of build/scripts-3.7/listAllGenomesInDirectory.py from 644 to 755
2023-05-14T02:09:11,228   changing mode of build/scripts-3.7/setup_annotation_dbs.py from 644 to 755
2023-05-14T02:09:11,229   changing mode of build/scripts-3.7/processNCBIGenBank.py from 644 to 755
2023-05-14T02:09:11,229   changing mode of build/scripts-3.7/extractBiG-SCAPEclusters.py from 644 to 755
2023-05-14T02:09:11,230   changing mode of build/scripts-3.7/findOrthologs.py from 644 to 755
2023-05-14T02:09:11,231   changing mode of build/scripts-3.7/generateSyntenicVisual.py from 644 to 755
2023-05-14T02:09:11,232   changing mode of build/scripts-3.7/convertMiniprotGffToGbkAndProt.py from 644 to 755
2023-05-14T02:09:11,233   changing mode of build/scripts-3.7/expandDereplicatedAlignment.py from 644 to 755
2023-05-14T02:09:11,304   /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-05-14T02:09:11,305   !!

2023-05-14T02:09:11,305           ********************************************************************************
2023-05-14T02:09:11,306           Please avoid running ``setup.py`` directly.
2023-05-14T02:09:11,306           Instead, use pypa/build, pypa/installer, pypa/build or
2023-05-14T02:09:11,306           other standards-based tools.

2023-05-14T02:09:11,307           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-05-14T02:09:11,307           ********************************************************************************

2023-05-14T02:09:11,308   !!
2023-05-14T02:09:11,308     self.initialize_options()
2023-05-14T02:09:11,370   installing to build/bdist.linux-armv7l/wheel
2023-05-14T02:09:11,370   running install
2023-05-14T02:09:11,430   running install_lib
2023-05-14T02:09:11,497   creating build/bdist.linux-armv7l
2023-05-14T02:09:11,498   creating build/bdist.linux-armv7l/wheel
2023-05-14T02:09:11,502   creating build/bdist.linux-armv7l/wheel/zol
2023-05-14T02:09:11,504   copying build/lib/zol/zol.py -> build/bdist.linux-armv7l/wheel/zol
2023-05-14T02:09:11,514   copying build/lib/zol/util.py -> build/bdist.linux-armv7l/wheel/zol
2023-05-14T02:09:11,520   copying build/lib/zol/__init__.py -> build/bdist.linux-armv7l/wheel/zol
2023-05-14T02:09:11,523   copying build/lib/zol/fai.py -> build/bdist.linux-armv7l/wheel/zol
2023-05-14T02:09:11,530   running install_egg_info
2023-05-14T02:09:11,692   running egg_info
2023-05-14T02:09:11,753   writing zol.egg-info/PKG-INFO
2023-05-14T02:09:11,757   writing dependency_links to zol.egg-info/dependency_links.txt
2023-05-14T02:09:11,763   writing top-level names to zol.egg-info/top_level.txt
2023-05-14T02:09:11,830   reading manifest file 'zol.egg-info/SOURCES.txt'
2023-05-14T02:09:11,835   adding license file 'LICENSE'
2023-05-14T02:09:11,841   writing manifest file 'zol.egg-info/SOURCES.txt'
2023-05-14T02:09:11,845   Copying zol.egg-info to build/bdist.linux-armv7l/wheel/zol-1.2.1-py3.7.egg-info
2023-05-14T02:09:11,866   running install_scripts
2023-05-14T02:09:11,868   creating build/bdist.linux-armv7l/wheel/zol-1.2.1.data
2023-05-14T02:09:11,869   creating build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,872   copying build/scripts-3.7/zol -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,879   copying build/scripts-3.7/expandDereplicatedAlignment.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,883   copying build/scripts-3.7/runProdigalAndMakeProperGenbank.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,888   copying build/scripts-3.7/convertMiniprotGffToGbkAndProt.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,893   copying build/scripts-3.7/findOrthologs.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,899   copying build/scripts-3.7/generateSyntenicVisual.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,903   copying build/scripts-3.7/processNCBIGenBank.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,908   copying build/scripts-3.7/fai -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,915   copying build/scripts-3.7/prepTG -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,921   copying build/scripts-3.7/extractBiG-SCAPEclusters.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,925   copying build/scripts-3.7/setup_annotation_dbs.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,931   copying build/scripts-3.7/listAllGenomesInDirectory.py -> build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts
2023-05-14T02:09:11,936   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/zol to 755
2023-05-14T02:09:11,937   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/expandDereplicatedAlignment.py to 755
2023-05-14T02:09:11,937   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/runProdigalAndMakeProperGenbank.py to 755
2023-05-14T02:09:11,938   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/convertMiniprotGffToGbkAndProt.py to 755
2023-05-14T02:09:11,939   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/findOrthologs.py to 755
2023-05-14T02:09:11,940   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/generateSyntenicVisual.py to 755
2023-05-14T02:09:11,941   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/processNCBIGenBank.py to 755
2023-05-14T02:09:11,942   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/fai to 755
2023-05-14T02:09:11,942   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/prepTG to 755
2023-05-14T02:09:11,943   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/extractBiG-SCAPEclusters.py to 755
2023-05-14T02:09:11,944   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/setup_annotation_dbs.py to 755
2023-05-14T02:09:11,945   changing mode of build/bdist.linux-armv7l/wheel/zol-1.2.1.data/scripts/listAllGenomesInDirectory.py to 755
2023-05-14T02:09:11,972   creating build/bdist.linux-armv7l/wheel/zol-1.2.1.dist-info/WHEEL
2023-05-14T02:09:11,977   creating '/tmp/pip-wheel-05jehzvj/zol-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-05-14T02:09:11,982   adding 'zol/__init__.py'
2023-05-14T02:09:11,996   adding 'zol/fai.py'
2023-05-14T02:09:12,008   adding 'zol/util.py'
2023-05-14T02:09:12,031   adding 'zol/zol.py'
2023-05-14T02:09:12,039   adding 'zol-1.2.1.data/scripts/convertMiniprotGffToGbkAndProt.py'
2023-05-14T02:09:12,043   adding 'zol-1.2.1.data/scripts/expandDereplicatedAlignment.py'
2023-05-14T02:09:12,047   adding 'zol-1.2.1.data/scripts/extractBiG-SCAPEclusters.py'
2023-05-14T02:09:12,055   adding 'zol-1.2.1.data/scripts/fai'
2023-05-14T02:09:12,061   adding 'zol-1.2.1.data/scripts/findOrthologs.py'
2023-05-14T02:09:12,065   adding 'zol-1.2.1.data/scripts/generateSyntenicVisual.py'
2023-05-14T02:09:12,069   adding 'zol-1.2.1.data/scripts/listAllGenomesInDirectory.py'
2023-05-14T02:09:12,074   adding 'zol-1.2.1.data/scripts/prepTG'
2023-05-14T02:09:12,078   adding 'zol-1.2.1.data/scripts/processNCBIGenBank.py'
2023-05-14T02:09:12,082   adding 'zol-1.2.1.data/scripts/runProdigalAndMakeProperGenbank.py'
2023-05-14T02:09:12,087   adding 'zol-1.2.1.data/scripts/setup_annotation_dbs.py'
2023-05-14T02:09:12,097   adding 'zol-1.2.1.data/scripts/zol'
2023-05-14T02:09:12,102   adding 'zol-1.2.1.dist-info/LICENSE'
2023-05-14T02:09:12,104   adding 'zol-1.2.1.dist-info/METADATA'
2023-05-14T02:09:12,106   adding 'zol-1.2.1.dist-info/WHEEL'
2023-05-14T02:09:12,108   adding 'zol-1.2.1.dist-info/top_level.txt'
2023-05-14T02:09:12,110   adding 'zol-1.2.1.dist-info/RECORD'
2023-05-14T02:09:12,117   removing build/bdist.linux-armv7l/wheel
2023-05-14T02:09:12,154   g++: error: zol/orthologs/runRBH.cpp: No such file or directory
2023-05-14T02:09:12,155   g++: fatal error: no input files
2023-05-14T02:09:12,155   compilation terminated.
2023-05-14T02:09:12,178   g++: error: zol/orthologs/splitDiamondResults.cpp: No such file or directory
2023-05-14T02:09:12,179   g++: fatal error: no input files
2023-05-14T02:09:12,180   compilation terminated.
2023-05-14T02:09:12,203   g++: error: zol/splitDiamondResultsForFai.cpp: No such file or directory
2023-05-14T02:09:12,204   g++: fatal error: no input files
2023-05-14T02:09:12,205   compilation terminated.
2023-05-14T02:09:12,381   Building wheel for zol (setup.py): finished with status 'done'
2023-05-14T02:09:12,391   Created wheel for zol: filename=zol-1.2.1-py3-none-any.whl size=92114 sha256=f729ea9cffd70c11b803fb4c8e142fece6f5cc66ad44f8a4bdca7e39fca0b899
2023-05-14T02:09:12,394   Stored in directory: /tmp/pip-ephem-wheel-cache-3sf9qo3w/wheels/ca/07/a4/d4d7bf69412b223e3588afbfe34fa3dae79683630ceb7ec94d
2023-05-14T02:09:12,421 Successfully built zol
2023-05-14T02:09:12,434 Removed build tracker: '/tmp/pip-build-tracker-u3j70nn_'