2023-05-14T07:52:42,665 Created temporary directory: /tmp/pip-build-tracker-5x2ik9hw 2023-05-14T07:52:42,668 Initialized build tracking at /tmp/pip-build-tracker-5x2ik9hw 2023-05-14T07:52:42,668 Created build tracker: /tmp/pip-build-tracker-5x2ik9hw 2023-05-14T07:52:42,669 Entered build tracker: /tmp/pip-build-tracker-5x2ik9hw 2023-05-14T07:52:42,670 Created temporary directory: /tmp/pip-wheel-ggvmqvzu 2023-05-14T07:52:42,678 Created temporary directory: /tmp/pip-ephem-wheel-cache-mgvht0c0 2023-05-14T07:52:42,730 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-14T07:52:42,738 2 location(s) to search for versions of nanomonsv: 2023-05-14T07:52:42,738 * https://pypi.org/simple/nanomonsv/ 2023-05-14T07:52:42,738 * https://www.piwheels.org/simple/nanomonsv/ 2023-05-14T07:52:42,739 Fetching project page and analyzing links: https://pypi.org/simple/nanomonsv/ 2023-05-14T07:52:42,740 Getting page https://pypi.org/simple/nanomonsv/ 2023-05-14T07:52:42,745 Found index url https://pypi.org/simple/ 2023-05-14T07:52:42,968 Fetched page https://pypi.org/simple/nanomonsv/ as application/vnd.pypi.simple.v1+json 2023-05-14T07:52:42,980 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/86/c2/7875348ad082d536efc388fb6fac2e6cc8860da5a4df7226646e31360f18/nanomonsv-0.2.0b1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,981 Found link https://files.pythonhosted.org/packages/60/2f/6a86517466677525216473caa779a32411d0cfdf993a98db1f78d06994e5/nanomonsv-0.2.0b1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b1 2023-05-14T07:52:42,982 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/ac/1d/e136a4f2c99217dc97c964ed57f0e5293a4357dc63861491db2ddad25e2a/nanomonsv-0.2.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,982 Found link https://files.pythonhosted.org/packages/18/6c/eefa4e71663b56b41fcc686be2661022da9570820d4b158e3c00666e608b/nanomonsv-0.2.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b2 2023-05-14T07:52:42,983 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/43/d0/2f35010f5238ee752950d2045d4272eb0586c4a9bd1d4edd0976cd743b1d/nanomonsv-0.2.0b3-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,983 Found link https://files.pythonhosted.org/packages/3a/b2/24335e5cac284d0b23fe89d01c134f88c2728ea22aa318e6c3e14fd5923a/nanomonsv-0.2.0b3.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b3 2023-05-14T07:52:42,984 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/98/c8/56e1b52cb06b80fee5343f236287736108317813f030eba3dcf93e221ff9/nanomonsv-0.2.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,985 Found link https://files.pythonhosted.org/packages/6a/0a/8ca5cd1f3cffbee8f9351d29868b279589b045615586c8ba34978261ee89/nanomonsv-0.2.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0 2023-05-14T07:52:42,985 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/c6/20/5e322748ed7a6385b77d806086968503631349583a804f894bc163618bc7/nanomonsv-0.3.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,986 Found link https://files.pythonhosted.org/packages/e6/c3/8a109548e162a81c53ad13a14ace41560d56b09af751065db7c6f3d5ae91/nanomonsv-0.3.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.3.0 2023-05-14T07:52:42,987 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/fc/5c/9b0a333fa811a928e889de64211ee16e94444be4c5a65486e892e28745a6/nanomonsv-0.4.0b1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,987 Found link https://files.pythonhosted.org/packages/b0/cc/11a5284b555de40a6b8434cb0e376d512ce99908a2cde3b1291691f34700/nanomonsv-0.4.0b1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0b1 2023-05-14T07:52:42,988 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/94/01/b058a48c94ef25fa011a5c0a08b09d210b83b4927820395f546d29d35bf6/nanomonsv-0.4.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,988 Found link https://files.pythonhosted.org/packages/33/31/bfa9a016b29480dc07accf15d2bfb1ccc846c442680e872f97094de58305/nanomonsv-0.4.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0b2 2023-05-14T07:52:42,989 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/e7/66/c8bbf6feaf08a3ede4a0e56aafccb07a145741a9df4f5f3bbfbca9717a45/nanomonsv-0.4.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,990 Found link https://files.pythonhosted.org/packages/f4/da/179916ab642904fddc77eee57387c0b5df3c99b6061f2ac7f797ffd212d3/nanomonsv-0.4.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0 2023-05-14T07:52:42,990 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/98/57/63fdd2b1aabeef1963bd3d7c9275d2f07c483ce0ca39a570c86eec02975c/nanomonsv-0.5.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,991 Found link https://files.pythonhosted.org/packages/09/67/cc66666ed48a2034c5b56f9cf7e0a66deac7ad90dfec88deb42d07eb7f85/nanomonsv-0.5.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.0b2 2023-05-14T07:52:42,992 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/07/87/b26f1ff2e850ca19ea236e6f61bdcd2476b34f3cef50d710945ffa454d66/nanomonsv-0.5.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,992 Found link https://files.pythonhosted.org/packages/25/cc/e7730b3c34d262d00eabdefd2c5fb4f7fe189eb308fd8986a69c1975d919/nanomonsv-0.5.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.0 2023-05-14T07:52:42,993 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/04/52/9613a8824bad6ecd8781f166b955ca208201c78de9714887976d9ef9000c/nanomonsv-0.5.1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-05-14T07:52:42,993 Found link https://files.pythonhosted.org/packages/a4/04/1136089512a8050178b741ea64c910f19fed3ed06035d7058434b4503bf1/nanomonsv-0.5.1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.1 2023-05-14T07:52:42,994 Fetching project page and analyzing links: https://www.piwheels.org/simple/nanomonsv/ 2023-05-14T07:52:42,995 Getting page https://www.piwheels.org/simple/nanomonsv/ 2023-05-14T07:52:42,997 Found index url https://www.piwheels.org/simple/ 2023-05-14T07:52:43,236 Fetched page https://www.piwheels.org/simple/nanomonsv/ as text/html 2023-05-14T07:52:43,246 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.1-py3-none-any.whl#sha256=85bc4125bcbabe38ba344a1d6c7702798755f2ad6dfe8b6a82b7ed96bb99ef3d (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,247 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.0-py3-none-any.whl#sha256=dfc6bd7c2b7944d8f12a46e535e89bd37c927a5203dd44cd8f82d70aca9b82b2 (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,247 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.0b2-py3-none-any.whl#sha256=8e5a4495ff5e3a8d7c9bd6e17a2caf86d12c52817b420176aae07ecb79fba651 (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,248 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0-py3-none-any.whl#sha256=9242ee898c9166b7b7b52e49af892bb4b614ce8be78f838952217b90b0733363 (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,248 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0b2-py3-none-any.whl#sha256=eabeb3034df7d19e5f305260f9aa5fc3b32de56ea54659ee96230124eaf34dfa (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,249 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0b1-py3-none-any.whl#sha256=a27a8be2cecb85df70b2f132954242da370eea197b1f2a4efcaecbdbe775d906 (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,249 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.3.0-py3-none-any.whl#sha256=60c30b67d806fac731eb67ed5cfb2db3abd1ea735d6fcc2f2bcb82ecd70438bd (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,250 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0-py3-none-any.whl#sha256=663ae38643f269f3a86a23453093f1e2def4a6be649c5a7459a5462e70906c2f (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,250 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b3-py3-none-any.whl#sha256=af9d6df96ad8b0c093ffa061ec387ddbc63acc9a96d6011b3fe533d0f4b93825 (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,251 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b2-py3-none-any.whl#sha256=ed523c14020f9d0a81a3dae05e1c549b41ab7caf99fa3d40f414e48d60e34745 (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,251 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b1-py3-none-any.whl#sha256=e1b3f57d8ac46982010d6fc5c74b8e1e735513a5cde24f8f658650bd1874f242 (from https://www.piwheels.org/simple/nanomonsv/) 2023-05-14T07:52:43,252 Skipping link: not a file: https://www.piwheels.org/simple/nanomonsv/ 2023-05-14T07:52:43,252 Skipping link: not a file: https://pypi.org/simple/nanomonsv/ 2023-05-14T07:52:43,287 Given no hashes to check 1 links for project 'nanomonsv': discarding no candidates 2023-05-14T07:52:43,318 Collecting nanomonsv==0.5.1 2023-05-14T07:52:43,322 Created temporary directory: /tmp/pip-unpack-guifrnkv 2023-05-14T07:52:43,498 Downloading nanomonsv-0.5.1.tar.gz (529 kB) 2023-05-14T07:52:43,925 Added nanomonsv==0.5.1 from https://files.pythonhosted.org/packages/a4/04/1136089512a8050178b741ea64c910f19fed3ed06035d7058434b4503bf1/nanomonsv-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-5x2ik9hw' 2023-05-14T07:52:43,928 Running setup.py (path:/tmp/pip-wheel-ggvmqvzu/nanomonsv_fde7a279ad594fbdbaad6118c75eb8f7/setup.py) egg_info for package nanomonsv 2023-05-14T07:52:43,930 Created temporary directory: /tmp/pip-pip-egg-info-95fbpfrz 2023-05-14T07:52:43,930 Preparing metadata (setup.py): started 2023-05-14T07:52:43,933 Running command python setup.py egg_info 2023-05-14T07:52:45,381 running egg_info 2023-05-14T07:52:45,389 creating /tmp/pip-pip-egg-info-95fbpfrz/nanomonsv.egg-info 2023-05-14T07:52:45,448 writing /tmp/pip-pip-egg-info-95fbpfrz/nanomonsv.egg-info/PKG-INFO 2023-05-14T07:52:45,454 writing dependency_links to /tmp/pip-pip-egg-info-95fbpfrz/nanomonsv.egg-info/dependency_links.txt 2023-05-14T07:52:45,458 writing entry points to /tmp/pip-pip-egg-info-95fbpfrz/nanomonsv.egg-info/entry_points.txt 2023-05-14T07:52:45,462 writing top-level names to /tmp/pip-pip-egg-info-95fbpfrz/nanomonsv.egg-info/top_level.txt 2023-05-14T07:52:45,465 writing manifest file '/tmp/pip-pip-egg-info-95fbpfrz/nanomonsv.egg-info/SOURCES.txt' 2023-05-14T07:52:45,656 reading manifest file '/tmp/pip-pip-egg-info-95fbpfrz/nanomonsv.egg-info/SOURCES.txt' 2023-05-14T07:52:45,660 adding license file 'LICENSE' 2023-05-14T07:52:45,668 writing manifest file '/tmp/pip-pip-egg-info-95fbpfrz/nanomonsv.egg-info/SOURCES.txt' 2023-05-14T07:52:45,787 Preparing metadata (setup.py): finished with status 'done' 2023-05-14T07:52:45,800 Source in /tmp/pip-wheel-ggvmqvzu/nanomonsv_fde7a279ad594fbdbaad6118c75eb8f7 has version 0.5.1, which satisfies requirement nanomonsv==0.5.1 from https://files.pythonhosted.org/packages/a4/04/1136089512a8050178b741ea64c910f19fed3ed06035d7058434b4503bf1/nanomonsv-0.5.1.tar.gz 2023-05-14T07:52:45,802 Removed nanomonsv==0.5.1 from https://files.pythonhosted.org/packages/a4/04/1136089512a8050178b741ea64c910f19fed3ed06035d7058434b4503bf1/nanomonsv-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-5x2ik9hw' 2023-05-14T07:52:45,814 Created temporary directory: /tmp/pip-unpack-pq7a4sua 2023-05-14T07:52:45,815 Building wheels for collected packages: nanomonsv 2023-05-14T07:52:45,824 Created temporary directory: /tmp/pip-wheel-apucwzdr 2023-05-14T07:52:45,825 Building wheel for nanomonsv (setup.py): started 2023-05-14T07:52:45,827 Destination directory: /tmp/pip-wheel-apucwzdr 2023-05-14T07:52:45,827 Running command python setup.py bdist_wheel 2023-05-14T07:52:47,720 running bdist_wheel 2023-05-14T07:52:47,900 running build 2023-05-14T07:52:47,901 running build_py 2023-05-14T07:52:47,968 creating build 2023-05-14T07:52:47,970 creating build/lib 2023-05-14T07:52:47,972 creating build/lib/nanomonsv 2023-05-14T07:52:47,975 copying nanomonsv/locate_bp_sbnd.py -> build/lib/nanomonsv 2023-05-14T07:52:47,979 copying nanomonsv/vcf_convert.py -> build/lib/nanomonsv 2023-05-14T07:52:47,984 copying nanomonsv/long_read_validate.py -> build/lib/nanomonsv 2023-05-14T07:52:47,990 copying nanomonsv/insert_classify.py -> build/lib/nanomonsv 2023-05-14T07:52:47,996 copying nanomonsv/ssw_lib.py -> build/lib/nanomonsv 2023-05-14T07:52:48,000 copying nanomonsv/version.py -> build/lib/nanomonsv 2023-05-14T07:52:48,003 copying nanomonsv/gather_support_read_seq.py -> build/lib/nanomonsv 2023-05-14T07:52:48,008 copying nanomonsv/identify.py -> build/lib/nanomonsv 2023-05-14T07:52:48,013 copying nanomonsv/arg_parser.py -> build/lib/nanomonsv 2023-05-14T07:52:48,017 copying nanomonsv/parse.py -> build/lib/nanomonsv 2023-05-14T07:52:48,022 copying nanomonsv/utils.py -> build/lib/nanomonsv 2023-05-14T07:52:48,026 copying nanomonsv/locate_bp.py -> build/lib/nanomonsv 2023-05-14T07:52:48,030 copying nanomonsv/cluster_sbnd.py -> build/lib/nanomonsv 2023-05-14T07:52:48,034 copying nanomonsv/swalign.py -> build/lib/nanomonsv 2023-05-14T07:52:48,039 copying nanomonsv/smith_waterman.py -> build/lib/nanomonsv 2023-05-14T07:52:48,043 copying nanomonsv/logger.py -> build/lib/nanomonsv 2023-05-14T07:52:48,046 copying nanomonsv/run.py -> build/lib/nanomonsv 2023-05-14T07:52:48,052 copying nanomonsv/post_proc.py -> build/lib/nanomonsv 2023-05-14T07:52:48,057 copying nanomonsv/cluster.py -> build/lib/nanomonsv 2023-05-14T07:52:48,062 copying nanomonsv/my_seq.py -> build/lib/nanomonsv 2023-05-14T07:52:48,065 copying nanomonsv/__init__.py -> build/lib/nanomonsv 2023-05-14T07:52:48,069 copying nanomonsv/generate_consensus.py -> build/lib/nanomonsv 2023-05-14T07:52:48,073 copying nanomonsv/count_sread_by_alignment.py -> build/lib/nanomonsv 2023-05-14T07:52:48,078 copying nanomonsv/pyssw.py -> build/lib/nanomonsv 2023-05-14T07:52:48,083 copying nanomonsv/merge_control.py -> build/lib/nanomonsv 2023-05-14T07:52:48,087 copying nanomonsv/filt.py -> build/lib/nanomonsv 2023-05-14T07:52:48,094 creating build/lib/nanomonsv/data 2023-05-14T07:52:48,096 copying nanomonsv/data/LINE1.hg38.bed.gz -> build/lib/nanomonsv/data 2023-05-14T07:52:48,109 copying nanomonsv/data/LINE1.hg19.bed.gz.tbi -> build/lib/nanomonsv/data 2023-05-14T07:52:48,117 copying nanomonsv/data/LINE1.hg19.bed.gz -> build/lib/nanomonsv/data 2023-05-14T07:52:48,131 copying nanomonsv/data/LINE1.hg38.bed.gz.tbi -> build/lib/nanomonsv/data 2023-05-14T07:52:48,213 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-14T07:52:48,213 !! 2023-05-14T07:52:48,214 ******************************************************************************** 2023-05-14T07:52:48,214 Please avoid running ``setup.py`` directly. 2023-05-14T07:52:48,215 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-14T07:52:48,215 other standards-based tools. 2023-05-14T07:52:48,216 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-14T07:52:48,216 ******************************************************************************** 2023-05-14T07:52:48,216 !! 2023-05-14T07:52:48,217 self.initialize_options() 2023-05-14T07:52:48,274 installing to build/bdist.linux-armv7l/wheel 2023-05-14T07:52:48,275 running install 2023-05-14T07:52:48,337 running install_lib 2023-05-14T07:52:48,401 creating build/bdist.linux-armv7l 2023-05-14T07:52:48,401 creating build/bdist.linux-armv7l/wheel 2023-05-14T07:52:48,406 creating build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,408 copying build/lib/nanomonsv/locate_bp_sbnd.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,412 copying build/lib/nanomonsv/vcf_convert.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,416 copying build/lib/nanomonsv/long_read_validate.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,422 copying build/lib/nanomonsv/insert_classify.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,428 copying build/lib/nanomonsv/ssw_lib.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,433 copying build/lib/nanomonsv/version.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,436 copying build/lib/nanomonsv/gather_support_read_seq.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,440 copying build/lib/nanomonsv/identify.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,445 copying build/lib/nanomonsv/arg_parser.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,450 copying build/lib/nanomonsv/parse.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,454 copying build/lib/nanomonsv/utils.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,458 copying build/lib/nanomonsv/locate_bp.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,463 copying build/lib/nanomonsv/cluster_sbnd.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,468 copying build/lib/nanomonsv/swalign.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,473 copying build/lib/nanomonsv/smith_waterman.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,478 copying build/lib/nanomonsv/logger.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,482 copying build/lib/nanomonsv/run.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,487 copying build/lib/nanomonsv/post_proc.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,493 copying build/lib/nanomonsv/cluster.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,497 copying build/lib/nanomonsv/my_seq.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,501 copying build/lib/nanomonsv/__init__.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,504 copying build/lib/nanomonsv/generate_consensus.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,510 creating build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-05-14T07:52:48,512 copying build/lib/nanomonsv/data/LINE1.hg38.bed.gz -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-05-14T07:52:48,524 copying build/lib/nanomonsv/data/LINE1.hg19.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-05-14T07:52:48,534 copying build/lib/nanomonsv/data/LINE1.hg19.bed.gz -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-05-14T07:52:48,551 copying build/lib/nanomonsv/data/LINE1.hg38.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-05-14T07:52:48,560 copying build/lib/nanomonsv/count_sread_by_alignment.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,565 copying build/lib/nanomonsv/pyssw.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,570 copying build/lib/nanomonsv/merge_control.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,575 copying build/lib/nanomonsv/filt.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-05-14T07:52:48,580 running install_egg_info 2023-05-14T07:52:48,737 running egg_info 2023-05-14T07:52:48,796 writing nanomonsv.egg-info/PKG-INFO 2023-05-14T07:52:48,801 writing dependency_links to nanomonsv.egg-info/dependency_links.txt 2023-05-14T07:52:48,806 writing entry points to nanomonsv.egg-info/entry_points.txt 2023-05-14T07:52:48,809 writing top-level names to nanomonsv.egg-info/top_level.txt 2023-05-14T07:52:48,877 reading manifest file 'nanomonsv.egg-info/SOURCES.txt' 2023-05-14T07:52:48,884 adding license file 'LICENSE' 2023-05-14T07:52:48,893 writing manifest file 'nanomonsv.egg-info/SOURCES.txt' 2023-05-14T07:52:48,896 Copying nanomonsv.egg-info to build/bdist.linux-armv7l/wheel/nanomonsv-0.5.1-py3.7.egg-info 2023-05-14T07:52:48,916 running install_scripts 2023-05-14T07:52:48,953 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-05-14T07:52:48,964 creating build/bdist.linux-armv7l/wheel/nanomonsv-0.5.1.dist-info/WHEEL 2023-05-14T07:52:48,970 creating '/tmp/pip-wheel-apucwzdr/nanomonsv-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-14T07:52:48,976 adding 'nanomonsv/__init__.py' 2023-05-14T07:52:48,981 adding 'nanomonsv/arg_parser.py' 2023-05-14T07:52:48,987 adding 'nanomonsv/cluster.py' 2023-05-14T07:52:48,992 adding 'nanomonsv/cluster_sbnd.py' 2023-05-14T07:52:48,998 adding 'nanomonsv/count_sread_by_alignment.py' 2023-05-14T07:52:49,004 adding 'nanomonsv/filt.py' 2023-05-14T07:52:49,008 adding 'nanomonsv/gather_support_read_seq.py' 2023-05-14T07:52:49,013 adding 'nanomonsv/generate_consensus.py' 2023-05-14T07:52:49,020 adding 'nanomonsv/identify.py' 2023-05-14T07:52:49,028 adding 'nanomonsv/insert_classify.py' 2023-05-14T07:52:49,033 adding 'nanomonsv/locate_bp.py' 2023-05-14T07:52:49,036 adding 'nanomonsv/locate_bp_sbnd.py' 2023-05-14T07:52:49,039 adding 'nanomonsv/logger.py' 2023-05-14T07:52:49,046 adding 'nanomonsv/long_read_validate.py' 2023-05-14T07:52:49,050 adding 'nanomonsv/merge_control.py' 2023-05-14T07:52:49,054 adding 'nanomonsv/my_seq.py' 2023-05-14T07:52:49,059 adding 'nanomonsv/parse.py' 2023-05-14T07:52:49,064 adding 'nanomonsv/post_proc.py' 2023-05-14T07:52:49,069 adding 'nanomonsv/pyssw.py' 2023-05-14T07:52:49,076 adding 'nanomonsv/run.py' 2023-05-14T07:52:49,080 adding 'nanomonsv/smith_waterman.py' 2023-05-14T07:52:49,085 adding 'nanomonsv/ssw_lib.py' 2023-05-14T07:52:49,091 adding 'nanomonsv/swalign.py' 2023-05-14T07:52:49,094 adding 'nanomonsv/utils.py' 2023-05-14T07:52:49,098 adding 'nanomonsv/vcf_convert.py' 2023-05-14T07:52:49,100 adding 'nanomonsv/version.py' 2023-05-14T07:52:49,148 adding 'nanomonsv/data/LINE1.hg19.bed.gz' 2023-05-14T07:52:49,175 adding 'nanomonsv/data/LINE1.hg19.bed.gz.tbi' 2023-05-14T07:52:49,224 adding 'nanomonsv/data/LINE1.hg38.bed.gz' 2023-05-14T07:52:49,251 adding 'nanomonsv/data/LINE1.hg38.bed.gz.tbi' 2023-05-14T07:52:49,270 adding 'nanomonsv-0.5.1.dist-info/LICENSE' 2023-05-14T07:52:49,275 adding 'nanomonsv-0.5.1.dist-info/METADATA' 2023-05-14T07:52:49,277 adding 'nanomonsv-0.5.1.dist-info/WHEEL' 2023-05-14T07:52:49,279 adding 'nanomonsv-0.5.1.dist-info/entry_points.txt' 2023-05-14T07:52:49,281 adding 'nanomonsv-0.5.1.dist-info/top_level.txt' 2023-05-14T07:52:49,283 adding 'nanomonsv-0.5.1.dist-info/RECORD' 2023-05-14T07:52:49,307 removing build/bdist.linux-armv7l/wheel 2023-05-14T07:52:49,475 Building wheel for nanomonsv (setup.py): finished with status 'done' 2023-05-14T07:52:49,497 Created wheel for nanomonsv: filename=nanomonsv-0.5.1-py3-none-any.whl size=533663 sha256=2b59c98330574680dcf18680d624015035dcb796c50eea658615f645782c2584 2023-05-14T07:52:49,500 Stored in directory: /tmp/pip-ephem-wheel-cache-mgvht0c0/wheels/75/48/76/01eecb981e94efb510b602f8f4091a398b4d0262a7135f5fe4 2023-05-14T07:52:49,534 Successfully built nanomonsv 2023-05-14T07:52:49,581 Removed build tracker: '/tmp/pip-build-tracker-5x2ik9hw'