2023-05-14T15:26:50,374 Created temporary directory: /tmp/pip-build-tracker-rzxrd37b 2023-05-14T15:26:50,377 Initialized build tracking at /tmp/pip-build-tracker-rzxrd37b 2023-05-14T15:26:50,378 Created build tracker: /tmp/pip-build-tracker-rzxrd37b 2023-05-14T15:26:50,378 Entered build tracker: /tmp/pip-build-tracker-rzxrd37b 2023-05-14T15:26:50,379 Created temporary directory: /tmp/pip-wheel-8xx3uu43 2023-05-14T15:26:50,388 Created temporary directory: /tmp/pip-ephem-wheel-cache-ok9fqxvr 2023-05-14T15:26:50,443 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-14T15:26:50,451 2 location(s) to search for versions of scine-chemoton: 2023-05-14T15:26:50,451 * https://pypi.org/simple/scine-chemoton/ 2023-05-14T15:26:50,451 * https://www.piwheels.org/simple/scine-chemoton/ 2023-05-14T15:26:50,452 Fetching project page and analyzing links: https://pypi.org/simple/scine-chemoton/ 2023-05-14T15:26:50,453 Getting page https://pypi.org/simple/scine-chemoton/ 2023-05-14T15:26:50,457 Found index url https://pypi.org/simple/ 2023-05-14T15:26:50,679 Fetched page https://pypi.org/simple/scine-chemoton/ as application/vnd.pypi.simple.v1+json 2023-05-14T15:26:50,683 Found link https://files.pythonhosted.org/packages/bd/5d/80449140e51bbb4133a2b4bfef310fefbdf3b4cac6e67efedd4a821ea4be/scine_chemoton-2.0.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 2.0.0 2023-05-14T15:26:50,685 Found link https://files.pythonhosted.org/packages/51/e3/d39e2dd58050b7a3a8c1c081a2754efc1d4158ea646c9443609608661ef6/scine_chemoton-2.1.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 2.1.0 2023-05-14T15:26:50,686 Found link https://files.pythonhosted.org/packages/9e/2c/3a11352d6a61564e8b4f804f1eb6963ce5d43e3c8db64051b9e452bb2f43/scine_chemoton-2.2.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 2.2.0 2023-05-14T15:26:50,688 Found link https://files.pythonhosted.org/packages/47/81/65f8d79d054ffd48cfa475f155c1a632bf5bdfc41be146744fb557a0d152/scine_chemoton-3.0.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 3.0.0 2023-05-14T15:26:50,689 Fetching project page and analyzing links: https://www.piwheels.org/simple/scine-chemoton/ 2023-05-14T15:26:50,689 Getting page https://www.piwheels.org/simple/scine-chemoton/ 2023-05-14T15:26:50,692 Found index url https://www.piwheels.org/simple/ 2023-05-14T15:26:50,958 Fetched page https://www.piwheels.org/simple/scine-chemoton/ as text/html 2023-05-14T15:26:50,963 Skipping link: No binaries permitted for scine-chemoton: https://www.piwheels.org/simple/scine-chemoton/scine_chemoton-2.2.0-py3-none-any.whl#sha256=8534283be00754497ef18d27b3624e20c2e00eb97992ed0b90b953a799be48bf (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6) 2023-05-14T15:26:50,963 Skipping link: No binaries permitted for scine-chemoton: https://www.piwheels.org/simple/scine-chemoton/scine_chemoton-2.1.0-py3-none-any.whl#sha256=934a5b4385907b7fb095a8ea1872c183f29e1cb7ba0226d17366582e56377cbd (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6) 2023-05-14T15:26:50,964 Skipping link: No binaries permitted for scine-chemoton: https://www.piwheels.org/simple/scine-chemoton/scine_chemoton-2.0.0-py3-none-any.whl#sha256=f1d52dcc1346e1cb0359760384eeab841059dcd3e6bcf51e32220788e2f4fcae (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6) 2023-05-14T15:26:50,964 Skipping link: not a file: https://www.piwheels.org/simple/scine-chemoton/ 2023-05-14T15:26:50,965 Skipping link: not a file: https://pypi.org/simple/scine-chemoton/ 2023-05-14T15:26:50,998 Given no hashes to check 1 links for project 'scine-chemoton': discarding no candidates 2023-05-14T15:26:51,030 Collecting scine-chemoton==3.0.0 2023-05-14T15:26:51,034 Created temporary directory: /tmp/pip-unpack-p14lxo8v 2023-05-14T15:26:51,241 Downloading scine_chemoton-3.0.0.tar.gz (291 kB) 2023-05-14T15:26:51,935 Added scine-chemoton==3.0.0 from https://files.pythonhosted.org/packages/47/81/65f8d79d054ffd48cfa475f155c1a632bf5bdfc41be146744fb557a0d152/scine_chemoton-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-rzxrd37b' 2023-05-14T15:26:51,939 Running setup.py (path:/tmp/pip-wheel-8xx3uu43/scine-chemoton_f1b6af05d3964ff59e47698131bca7e6/setup.py) egg_info for package scine-chemoton 2023-05-14T15:26:51,940 Created temporary directory: /tmp/pip-pip-egg-info-hpa0fkea 2023-05-14T15:26:51,941 Preparing metadata (setup.py): started 2023-05-14T15:26:51,943 Running command python setup.py egg_info 2023-05-14T15:26:53,613 running egg_info 2023-05-14T15:26:53,616 creating /tmp/pip-pip-egg-info-hpa0fkea/scine_chemoton.egg-info 2023-05-14T15:26:53,673 writing /tmp/pip-pip-egg-info-hpa0fkea/scine_chemoton.egg-info/PKG-INFO 2023-05-14T15:26:53,679 writing dependency_links to /tmp/pip-pip-egg-info-hpa0fkea/scine_chemoton.egg-info/dependency_links.txt 2023-05-14T15:26:53,684 writing requirements to /tmp/pip-pip-egg-info-hpa0fkea/scine_chemoton.egg-info/requires.txt 2023-05-14T15:26:53,686 writing top-level names to /tmp/pip-pip-egg-info-hpa0fkea/scine_chemoton.egg-info/top_level.txt 2023-05-14T15:26:53,688 writing manifest file '/tmp/pip-pip-egg-info-hpa0fkea/scine_chemoton.egg-info/SOURCES.txt' 2023-05-14T15:26:53,882 reading manifest file '/tmp/pip-pip-egg-info-hpa0fkea/scine_chemoton.egg-info/SOURCES.txt' 2023-05-14T15:26:53,885 reading manifest template 'MANIFEST.in' 2023-05-14T15:26:53,887 warning: no files found matching 'LICENSE' 2023-05-14T15:26:53,890 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-05-14T15:26:53,892 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-05-14T15:26:53,924 warning: no files found matching 'versioneer.py' 2023-05-14T15:26:53,925 warning: no files found matching 'scine_chemoton/tests/resources' 2023-05-14T15:26:53,935 writing manifest file '/tmp/pip-pip-egg-info-hpa0fkea/scine_chemoton.egg-info/SOURCES.txt' 2023-05-14T15:26:54,054 Preparing metadata (setup.py): finished with status 'done' 2023-05-14T15:26:54,068 Source in /tmp/pip-wheel-8xx3uu43/scine-chemoton_f1b6af05d3964ff59e47698131bca7e6 has version 3.0.0, which satisfies requirement scine-chemoton==3.0.0 from https://files.pythonhosted.org/packages/47/81/65f8d79d054ffd48cfa475f155c1a632bf5bdfc41be146744fb557a0d152/scine_chemoton-3.0.0.tar.gz 2023-05-14T15:26:54,070 Removed scine-chemoton==3.0.0 from https://files.pythonhosted.org/packages/47/81/65f8d79d054ffd48cfa475f155c1a632bf5bdfc41be146744fb557a0d152/scine_chemoton-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-rzxrd37b' 2023-05-14T15:26:54,087 Created temporary directory: /tmp/pip-unpack-6zidrggm 2023-05-14T15:26:54,088 Building wheels for collected packages: scine-chemoton 2023-05-14T15:26:54,097 Created temporary directory: /tmp/pip-wheel-2cvzznxl 2023-05-14T15:26:54,098 Building wheel for scine-chemoton (setup.py): started 2023-05-14T15:26:54,100 Destination directory: /tmp/pip-wheel-2cvzznxl 2023-05-14T15:26:54,100 Running command python setup.py bdist_wheel 2023-05-14T15:26:56,305 running bdist_wheel 2023-05-14T15:26:56,480 running build 2023-05-14T15:26:56,480 running build_py 2023-05-14T15:26:56,543 creating build 2023-05-14T15:26:56,544 creating build/lib 2023-05-14T15:26:56,546 creating build/lib/scine_chemoton 2023-05-14T15:26:56,548 copying scine_chemoton/__init__.py -> build/lib/scine_chemoton 2023-05-14T15:26:56,552 copying scine_chemoton/_version.py -> build/lib/scine_chemoton 2023-05-14T15:26:56,555 copying scine_chemoton/default_settings.py -> build/lib/scine_chemoton 2023-05-14T15:26:56,558 copying scine_chemoton/engine.py -> build/lib/scine_chemoton 2023-05-14T15:26:56,562 copying scine_chemoton/__main__.py -> build/lib/scine_chemoton 2023-05-14T15:26:56,569 creating build/lib/scine_chemoton/gears 2023-05-14T15:26:56,570 copying scine_chemoton/gears/__init__.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,575 copying scine_chemoton/gears/refinement.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,582 copying scine_chemoton/gears/rerun_calculations.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,586 copying scine_chemoton/gears/kinetics.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,591 copying scine_chemoton/gears/reaction.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,596 copying scine_chemoton/gears/compound.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,601 copying scine_chemoton/gears/thermo.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,606 copying scine_chemoton/gears/scheduler.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,610 copying scine_chemoton/gears/pathfinder.py -> build/lib/scine_chemoton/gears 2023-05-14T15:26:56,620 creating build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,622 copying scine_chemoton/utilities/__init__.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,626 copying scine_chemoton/utilities/compound_and_flask_creation.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,630 copying scine_chemoton/utilities/calculation_creation_helpers.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,634 copying scine_chemoton/utilities/insert_concentration.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,637 copying scine_chemoton/utilities/comparisons.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,641 copying scine_chemoton/utilities/get_molecular_formula.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,645 copying scine_chemoton/utilities/insert_initial_structure.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,649 copying scine_chemoton/utilities/energy_query_functions.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,654 copying scine_chemoton/utilities/queries.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,659 copying scine_chemoton/utilities/masm.py -> build/lib/scine_chemoton/utilities 2023-05-14T15:26:56,664 creating build/lib/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:56,666 copying scine_chemoton/gears/kinetic_modeling/concentration_query_functions.py -> build/lib/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:56,671 copying scine_chemoton/gears/kinetic_modeling/__init__.py -> build/lib/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:56,675 copying scine_chemoton/gears/kinetic_modeling/kinetic_modeling.py -> build/lib/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:56,679 copying scine_chemoton/gears/kinetic_modeling/prepare_kinetic_modeling_job.py -> build/lib/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:56,686 creating build/lib/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:56,688 copying scine_chemoton/gears/elementary_steps/minimal.py -> build/lib/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:56,693 copying scine_chemoton/gears/elementary_steps/reactive_site_filters.py -> build/lib/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:56,698 copying scine_chemoton/gears/elementary_steps/minimum_energy_conformer.py -> build/lib/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:56,702 copying scine_chemoton/gears/elementary_steps/__init__.py -> build/lib/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:56,707 copying scine_chemoton/gears/elementary_steps/aggregate_filters.py -> build/lib/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:56,713 copying scine_chemoton/gears/elementary_steps/brute_force.py -> build/lib/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:56,717 creating build/lib/scine_chemoton/gears/conformers 2023-05-14T15:26:56,719 copying scine_chemoton/gears/conformers/__init__.py -> build/lib/scine_chemoton/gears/conformers 2023-05-14T15:26:56,723 copying scine_chemoton/gears/conformers/brute_force.py -> build/lib/scine_chemoton/gears/conformers 2023-05-14T15:26:56,728 creating build/lib/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:56,730 copying scine_chemoton/gears/elementary_steps/reaction_rules/__init__.py -> build/lib/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:56,734 copying scine_chemoton/gears/elementary_steps/reaction_rules/element_rules.py -> build/lib/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:56,738 copying scine_chemoton/gears/elementary_steps/reaction_rules/polarization_rules.py -> build/lib/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:56,742 copying scine_chemoton/gears/elementary_steps/reaction_rules/distance_rules.py -> build/lib/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:56,749 creating build/lib/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:56,750 copying scine_chemoton/gears/elementary_steps/trial_generator/bond_based.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:56,757 copying scine_chemoton/gears/elementary_steps/trial_generator/__init__.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:56,762 copying scine_chemoton/gears/elementary_steps/trial_generator/connectivity_analyzer.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:56,766 copying scine_chemoton/gears/elementary_steps/trial_generator/fast_dissociations.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:56,772 copying scine_chemoton/gears/elementary_steps/trial_generator/fragment_based.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:56,779 copying scine_chemoton/gears/elementary_steps/trial_generator/template_based.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:56,785 creating build/lib/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:56,787 copying scine_chemoton/utilities/reactive_complexes/__init__.py -> build/lib/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:56,791 copying scine_chemoton/utilities/reactive_complexes/lebedev_sphere.py -> build/lib/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:56,825 copying scine_chemoton/utilities/reactive_complexes/inter_reactive_complexes.py -> build/lib/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:56,832 copying scine_chemoton/utilities/reactive_complexes/unit_circle.py -> build/lib/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:56,836 running egg_info 2023-05-14T15:26:56,979 writing scine_chemoton.egg-info/PKG-INFO 2023-05-14T15:26:56,984 writing dependency_links to scine_chemoton.egg-info/dependency_links.txt 2023-05-14T15:26:56,988 deleting scine_chemoton.egg-info/entry_points.txt 2023-05-14T15:26:56,990 writing requirements to scine_chemoton.egg-info/requires.txt 2023-05-14T15:26:56,993 writing top-level names to scine_chemoton.egg-info/top_level.txt 2023-05-14T15:26:57,070 reading manifest file 'scine_chemoton.egg-info/SOURCES.txt' 2023-05-14T15:26:57,094 reading manifest template 'MANIFEST.in' 2023-05-14T15:26:57,095 warning: no files found matching 'LICENSE' 2023-05-14T15:26:57,099 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-05-14T15:26:57,101 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-05-14T15:26:57,132 warning: no files found matching 'versioneer.py' 2023-05-14T15:26:57,133 warning: no files found matching 'scine_chemoton/tests/resources' 2023-05-14T15:26:57,151 writing manifest file 'scine_chemoton.egg-info/SOURCES.txt' 2023-05-14T15:26:57,164 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests' is absent from the `packages` configuration. 2023-05-14T15:26:57,164 !! 2023-05-14T15:26:57,165 ******************************************************************************** 2023-05-14T15:26:57,165 ############################ 2023-05-14T15:26:57,165 # Package would be ignored # 2023-05-14T15:26:57,166 ############################ 2023-05-14T15:26:57,166 Python recognizes 'scine_chemoton.tests' as an importable package[^1], 2023-05-14T15:26:57,166 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,167 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,167 package, please make sure that 'scine_chemoton.tests' is explicitly added 2023-05-14T15:26:57,167 to the `packages` configuration field. 2023-05-14T15:26:57,168 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,168 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,169 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,169 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,170 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,170 If you don't want 'scine_chemoton.tests' to be distributed and are 2023-05-14T15:26:57,171 already explicitly excluding 'scine_chemoton.tests' via 2023-05-14T15:26:57,171 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,171 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,172 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,172 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,174 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,174 even if it does not contain any `.py` files. 2023-05-14T15:26:57,174 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,175 directory, all directories are treated like packages. 2023-05-14T15:26:57,175 ******************************************************************************** 2023-05-14T15:26:57,176 !! 2023-05-14T15:26:57,176 check.warn(importable) 2023-05-14T15:26:57,176 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests.gears' is absent from the `packages` configuration. 2023-05-14T15:26:57,177 !! 2023-05-14T15:26:57,177 ******************************************************************************** 2023-05-14T15:26:57,178 ############################ 2023-05-14T15:26:57,178 # Package would be ignored # 2023-05-14T15:26:57,178 ############################ 2023-05-14T15:26:57,178 Python recognizes 'scine_chemoton.tests.gears' as an importable package[^1], 2023-05-14T15:26:57,179 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,179 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,180 package, please make sure that 'scine_chemoton.tests.gears' is explicitly added 2023-05-14T15:26:57,180 to the `packages` configuration field. 2023-05-14T15:26:57,181 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,181 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,182 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,182 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,183 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,183 If you don't want 'scine_chemoton.tests.gears' to be distributed and are 2023-05-14T15:26:57,184 already explicitly excluding 'scine_chemoton.tests.gears' via 2023-05-14T15:26:57,184 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,184 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,185 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,185 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,187 even if it does not contain any `.py` files. 2023-05-14T15:26:57,187 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,188 directory, all directories are treated like packages. 2023-05-14T15:26:57,188 ******************************************************************************** 2023-05-14T15:26:57,189 !! 2023-05-14T15:26:57,189 check.warn(importable) 2023-05-14T15:26:57,189 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests.gears.conformers' is absent from the `packages` configuration. 2023-05-14T15:26:57,190 !! 2023-05-14T15:26:57,190 ******************************************************************************** 2023-05-14T15:26:57,190 ############################ 2023-05-14T15:26:57,191 # Package would be ignored # 2023-05-14T15:26:57,191 ############################ 2023-05-14T15:26:57,191 Python recognizes 'scine_chemoton.tests.gears.conformers' as an importable package[^1], 2023-05-14T15:26:57,192 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,192 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,193 package, please make sure that 'scine_chemoton.tests.gears.conformers' is explicitly added 2023-05-14T15:26:57,193 to the `packages` configuration field. 2023-05-14T15:26:57,194 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,194 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,195 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,196 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,197 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,198 If you don't want 'scine_chemoton.tests.gears.conformers' to be distributed and are 2023-05-14T15:26:57,198 already explicitly excluding 'scine_chemoton.tests.gears.conformers' via 2023-05-14T15:26:57,199 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,200 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,201 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,202 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,204 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,207 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,207 even if it does not contain any `.py` files. 2023-05-14T15:26:57,208 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,208 directory, all directories are treated like packages. 2023-05-14T15:26:57,208 ******************************************************************************** 2023-05-14T15:26:57,209 !! 2023-05-14T15:26:57,210 check.warn(importable) 2023-05-14T15:26:57,210 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests.gears.elementary_steps' is absent from the `packages` configuration. 2023-05-14T15:26:57,211 !! 2023-05-14T15:26:57,212 ******************************************************************************** 2023-05-14T15:26:57,212 ############################ 2023-05-14T15:26:57,212 # Package would be ignored # 2023-05-14T15:26:57,213 ############################ 2023-05-14T15:26:57,213 Python recognizes 'scine_chemoton.tests.gears.elementary_steps' as an importable package[^1], 2023-05-14T15:26:57,214 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,215 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,215 package, please make sure that 'scine_chemoton.tests.gears.elementary_steps' is explicitly added 2023-05-14T15:26:57,215 to the `packages` configuration field. 2023-05-14T15:26:57,216 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,217 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,217 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,219 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,220 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,220 If you don't want 'scine_chemoton.tests.gears.elementary_steps' to be distributed and are 2023-05-14T15:26:57,221 already explicitly excluding 'scine_chemoton.tests.gears.elementary_steps' via 2023-05-14T15:26:57,221 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,222 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,222 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,223 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,224 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,226 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,226 even if it does not contain any `.py` files. 2023-05-14T15:26:57,227 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,227 directory, all directories are treated like packages. 2023-05-14T15:26:57,227 ******************************************************************************** 2023-05-14T15:26:57,228 !! 2023-05-14T15:26:57,229 check.warn(importable) 2023-05-14T15:26:57,229 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests.gears.elementary_steps.trial_generator' is absent from the `packages` configuration. 2023-05-14T15:26:57,230 !! 2023-05-14T15:26:57,231 ******************************************************************************** 2023-05-14T15:26:57,231 ############################ 2023-05-14T15:26:57,232 # Package would be ignored # 2023-05-14T15:26:57,232 ############################ 2023-05-14T15:26:57,232 Python recognizes 'scine_chemoton.tests.gears.elementary_steps.trial_generator' as an importable package[^1], 2023-05-14T15:26:57,233 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,234 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,234 package, please make sure that 'scine_chemoton.tests.gears.elementary_steps.trial_generator' is explicitly added 2023-05-14T15:26:57,235 to the `packages` configuration field. 2023-05-14T15:26:57,235 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,236 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,236 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,237 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,238 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,239 If you don't want 'scine_chemoton.tests.gears.elementary_steps.trial_generator' to be distributed and are 2023-05-14T15:26:57,240 already explicitly excluding 'scine_chemoton.tests.gears.elementary_steps.trial_generator' via 2023-05-14T15:26:57,240 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,241 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,241 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,242 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,243 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,244 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,244 even if it does not contain any `.py` files. 2023-05-14T15:26:57,245 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,245 directory, all directories are treated like packages. 2023-05-14T15:26:57,245 ******************************************************************************** 2023-05-14T15:26:57,246 !! 2023-05-14T15:26:57,247 check.warn(importable) 2023-05-14T15:26:57,247 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests.gears.kinetic_modeling' is absent from the `packages` configuration. 2023-05-14T15:26:57,247 !! 2023-05-14T15:26:57,248 ******************************************************************************** 2023-05-14T15:26:57,249 ############################ 2023-05-14T15:26:57,249 # Package would be ignored # 2023-05-14T15:26:57,250 ############################ 2023-05-14T15:26:57,250 Python recognizes 'scine_chemoton.tests.gears.kinetic_modeling' as an importable package[^1], 2023-05-14T15:26:57,251 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,251 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,252 package, please make sure that 'scine_chemoton.tests.gears.kinetic_modeling' is explicitly added 2023-05-14T15:26:57,252 to the `packages` configuration field. 2023-05-14T15:26:57,253 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,253 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,254 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,255 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,256 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,256 If you don't want 'scine_chemoton.tests.gears.kinetic_modeling' to be distributed and are 2023-05-14T15:26:57,257 already explicitly excluding 'scine_chemoton.tests.gears.kinetic_modeling' via 2023-05-14T15:26:57,257 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,258 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,258 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,259 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,260 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,261 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,262 even if it does not contain any `.py` files. 2023-05-14T15:26:57,262 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,263 directory, all directories are treated like packages. 2023-05-14T15:26:57,263 ******************************************************************************** 2023-05-14T15:26:57,264 !! 2023-05-14T15:26:57,264 check.warn(importable) 2023-05-14T15:26:57,264 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests.resources' is absent from the `packages` configuration. 2023-05-14T15:26:57,265 !! 2023-05-14T15:26:57,266 ******************************************************************************** 2023-05-14T15:26:57,266 ############################ 2023-05-14T15:26:57,267 # Package would be ignored # 2023-05-14T15:26:57,267 ############################ 2023-05-14T15:26:57,267 Python recognizes 'scine_chemoton.tests.resources' as an importable package[^1], 2023-05-14T15:26:57,268 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,269 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,269 package, please make sure that 'scine_chemoton.tests.resources' is explicitly added 2023-05-14T15:26:57,269 to the `packages` configuration field. 2023-05-14T15:26:57,270 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,271 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,271 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,272 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,273 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,274 If you don't want 'scine_chemoton.tests.resources' to be distributed and are 2023-05-14T15:26:57,274 already explicitly excluding 'scine_chemoton.tests.resources' via 2023-05-14T15:26:57,275 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,275 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,275 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,276 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,277 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,278 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,279 even if it does not contain any `.py` files. 2023-05-14T15:26:57,279 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,279 directory, all directories are treated like packages. 2023-05-14T15:26:57,280 ******************************************************************************** 2023-05-14T15:26:57,281 !! 2023-05-14T15:26:57,281 check.warn(importable) 2023-05-14T15:26:57,282 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests.utilities' is absent from the `packages` configuration. 2023-05-14T15:26:57,282 !! 2023-05-14T15:26:57,283 ******************************************************************************** 2023-05-14T15:26:57,283 ############################ 2023-05-14T15:26:57,284 # Package would be ignored # 2023-05-14T15:26:57,284 ############################ 2023-05-14T15:26:57,284 Python recognizes 'scine_chemoton.tests.utilities' as an importable package[^1], 2023-05-14T15:26:57,285 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,286 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,286 package, please make sure that 'scine_chemoton.tests.utilities' is explicitly added 2023-05-14T15:26:57,287 to the `packages` configuration field. 2023-05-14T15:26:57,287 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,288 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,288 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,289 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,290 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,291 If you don't want 'scine_chemoton.tests.utilities' to be distributed and are 2023-05-14T15:26:57,291 already explicitly excluding 'scine_chemoton.tests.utilities' via 2023-05-14T15:26:57,291 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,292 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,292 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,294 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,296 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,296 even if it does not contain any `.py` files. 2023-05-14T15:26:57,297 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,297 directory, all directories are treated like packages. 2023-05-14T15:26:57,297 ******************************************************************************** 2023-05-14T15:26:57,298 !! 2023-05-14T15:26:57,299 check.warn(importable) 2023-05-14T15:26:57,299 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'scine_chemoton.tests.utilities.reactive_complexes' is absent from the `packages` configuration. 2023-05-14T15:26:57,299 !! 2023-05-14T15:26:57,300 ******************************************************************************** 2023-05-14T15:26:57,300 ############################ 2023-05-14T15:26:57,301 # Package would be ignored # 2023-05-14T15:26:57,301 ############################ 2023-05-14T15:26:57,302 Python recognizes 'scine_chemoton.tests.utilities.reactive_complexes' as an importable package[^1], 2023-05-14T15:26:57,302 but it is absent from setuptools' `packages` configuration. 2023-05-14T15:26:57,303 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T15:26:57,303 package, please make sure that 'scine_chemoton.tests.utilities.reactive_complexes' is explicitly added 2023-05-14T15:26:57,304 to the `packages` configuration field. 2023-05-14T15:26:57,304 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T15:26:57,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T15:26:57,305 instead of `find_packages(...)`/`find:`). 2023-05-14T15:26:57,306 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T15:26:57,308 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T15:26:57,309 If you don't want 'scine_chemoton.tests.utilities.reactive_complexes' to be distributed and are 2023-05-14T15:26:57,309 already explicitly excluding 'scine_chemoton.tests.utilities.reactive_complexes' via 2023-05-14T15:26:57,309 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T15:26:57,310 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T15:26:57,310 combination with a more fine grained `package-data` configuration. 2023-05-14T15:26:57,311 You can read more about "package data files" on setuptools documentation page: 2023-05-14T15:26:57,312 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T15:26:57,313 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T15:26:57,314 even if it does not contain any `.py` files. 2023-05-14T15:26:57,314 On the other hand, currently there is no concept of package data 2023-05-14T15:26:57,314 directory, all directories are treated like packages. 2023-05-14T15:26:57,315 ******************************************************************************** 2023-05-14T15:26:57,316 !! 2023-05-14T15:26:57,316 check.warn(importable) 2023-05-14T15:26:57,316 creating build/lib/scine_chemoton/tests 2023-05-14T15:26:57,317 copying scine_chemoton/tests/__init__.py -> build/lib/scine_chemoton/tests 2023-05-14T15:26:57,317 copying scine_chemoton/tests/test_database_setup.py -> build/lib/scine_chemoton/tests 2023-05-14T15:26:57,318 creating build/lib/scine_chemoton/tests/gears 2023-05-14T15:26:57,318 copying scine_chemoton/tests/gears/__init__.py -> build/lib/scine_chemoton/tests/gears 2023-05-14T15:26:57,318 copying scine_chemoton/tests/gears/test_compound.py -> build/lib/scine_chemoton/tests/gears 2023-05-14T15:26:57,319 copying scine_chemoton/tests/gears/test_kinetics.py -> build/lib/scine_chemoton/tests/gears 2023-05-14T15:26:57,319 copying scine_chemoton/tests/gears/test_reaction.py -> build/lib/scine_chemoton/tests/gears 2023-05-14T15:26:57,320 copying scine_chemoton/tests/gears/test_refinement.py -> build/lib/scine_chemoton/tests/gears 2023-05-14T15:26:57,320 copying scine_chemoton/tests/gears/test_scheduler.py -> build/lib/scine_chemoton/tests/gears 2023-05-14T15:26:57,321 copying scine_chemoton/tests/gears/test_thermo.py -> build/lib/scine_chemoton/tests/gears 2023-05-14T15:26:57,321 creating build/lib/scine_chemoton/tests/gears/conformers 2023-05-14T15:26:57,322 copying scine_chemoton/tests/gears/conformers/__init__.py -> build/lib/scine_chemoton/tests/gears/conformers 2023-05-14T15:26:57,322 copying scine_chemoton/tests/gears/conformers/test_brute_force.py -> build/lib/scine_chemoton/tests/gears/conformers 2023-05-14T15:26:57,322 creating build/lib/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,323 copying scine_chemoton/tests/gears/elementary_steps/__init__.py -> build/lib/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,323 copying scine_chemoton/tests/gears/elementary_steps/mock_trial_generator.py -> build/lib/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,324 copying scine_chemoton/tests/gears/elementary_steps/test_brute_force.py -> build/lib/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,324 copying scine_chemoton/tests/gears/elementary_steps/test_further_dissociations_reactive_site_filters.py -> build/lib/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,324 copying scine_chemoton/tests/gears/elementary_steps/test_minimal.py -> build/lib/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,325 copying scine_chemoton/tests/gears/elementary_steps/test_reactive_site_filters.py -> build/lib/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,325 creating build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,326 copying scine_chemoton/tests/gears/elementary_steps/trial_generator/__init__.py -> build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,327 copying scine_chemoton/tests/gears/elementary_steps/trial_generator/test_bond_based.py -> build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,327 copying scine_chemoton/tests/gears/elementary_steps/trial_generator/test_connectivity_analyzer.py -> build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,327 copying scine_chemoton/tests/gears/elementary_steps/trial_generator/test_fast_dissociations.py -> build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,328 copying scine_chemoton/tests/gears/elementary_steps/trial_generator/test_fragment_based.py -> build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,330 creating build/lib/scine_chemoton/tests/gears/kinetic_modeling 2023-05-14T15:26:57,332 copying scine_chemoton/tests/gears/kinetic_modeling/__init__.py -> build/lib/scine_chemoton/tests/gears/kinetic_modeling 2023-05-14T15:26:57,336 copying scine_chemoton/tests/gears/kinetic_modeling/test_kinetic_modeling.py -> build/lib/scine_chemoton/tests/gears/kinetic_modeling 2023-05-14T15:26:57,342 creating build/lib/scine_chemoton/tests/resources 2023-05-14T15:26:57,343 copying scine_chemoton/tests/resources/__init__.py -> build/lib/scine_chemoton/tests/resources 2023-05-14T15:26:57,348 creating build/lib/scine_chemoton/tests/utilities 2023-05-14T15:26:57,349 copying scine_chemoton/tests/utilities/__init__.py -> build/lib/scine_chemoton/tests/utilities 2023-05-14T15:26:57,354 copying scine_chemoton/tests/utilities/queries_test.py -> build/lib/scine_chemoton/tests/utilities 2023-05-14T15:26:57,358 copying scine_chemoton/tests/utilities/test_insert_concentration.py -> build/lib/scine_chemoton/tests/utilities 2023-05-14T15:26:57,363 copying scine_chemoton/tests/utilities/test_insert_initial_structure.py -> build/lib/scine_chemoton/tests/utilities 2023-05-14T15:26:57,368 copying scine_chemoton/tests/utilities/test_masm.py -> build/lib/scine_chemoton/tests/utilities 2023-05-14T15:26:57,372 creating build/lib/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:57,373 copying scine_chemoton/tests/utilities/reactive_complexes/__init__.py -> build/lib/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:57,378 copying scine_chemoton/tests/utilities/reactive_complexes/test_inter_reactive_complexes.py -> build/lib/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:57,384 copying scine_chemoton/tests/utilities/reactive_complexes/test_lebedev_sphere.py -> build/lib/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:57,388 copying scine_chemoton/tests/utilities/reactive_complexes/test_masm_pruning.py -> build/lib/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:57,393 copying scine_chemoton/tests/utilities/reactive_complexes/test_unit_circle.py -> build/lib/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:57,476 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-14T15:26:57,476 !! 2023-05-14T15:26:57,477 ******************************************************************************** 2023-05-14T15:26:57,478 Please avoid running ``setup.py`` directly. 2023-05-14T15:26:57,478 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-14T15:26:57,478 other standards-based tools. 2023-05-14T15:26:57,479 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-14T15:26:57,479 ******************************************************************************** 2023-05-14T15:26:57,480 !! 2023-05-14T15:26:57,480 self.initialize_options() 2023-05-14T15:26:57,537 installing to build/bdist.linux-armv7l/wheel 2023-05-14T15:26:57,538 running install 2023-05-14T15:26:57,600 running install_lib 2023-05-14T15:26:57,662 creating build/bdist.linux-armv7l 2023-05-14T15:26:57,662 creating build/bdist.linux-armv7l/wheel 2023-05-14T15:26:57,666 creating build/bdist.linux-armv7l/wheel/scine_chemoton 2023-05-14T15:26:57,668 copying build/lib/scine_chemoton/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton 2023-05-14T15:26:57,672 copying build/lib/scine_chemoton/_version.py -> build/bdist.linux-armv7l/wheel/scine_chemoton 2023-05-14T15:26:57,677 creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,679 copying build/lib/scine_chemoton/gears/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,685 creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:57,687 copying build/lib/scine_chemoton/gears/kinetic_modeling/concentration_query_functions.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:57,692 copying build/lib/scine_chemoton/gears/kinetic_modeling/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:57,695 copying build/lib/scine_chemoton/gears/kinetic_modeling/kinetic_modeling.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:57,700 copying build/lib/scine_chemoton/gears/kinetic_modeling/prepare_kinetic_modeling_job.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/kinetic_modeling 2023-05-14T15:26:57,705 copying build/lib/scine_chemoton/gears/refinement.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,711 copying build/lib/scine_chemoton/gears/rerun_calculations.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,717 creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:57,719 copying build/lib/scine_chemoton/gears/elementary_steps/minimal.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:57,723 copying build/lib/scine_chemoton/gears/elementary_steps/reactive_site_filters.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:57,728 copying build/lib/scine_chemoton/gears/elementary_steps/minimum_energy_conformer.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:57,732 copying build/lib/scine_chemoton/gears/elementary_steps/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:57,737 copying build/lib/scine_chemoton/gears/elementary_steps/aggregate_filters.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:57,743 copying build/lib/scine_chemoton/gears/elementary_steps/brute_force.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps 2023-05-14T15:26:57,748 creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:57,749 copying build/lib/scine_chemoton/gears/elementary_steps/reaction_rules/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:57,753 copying build/lib/scine_chemoton/gears/elementary_steps/reaction_rules/element_rules.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:57,757 copying build/lib/scine_chemoton/gears/elementary_steps/reaction_rules/polarization_rules.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:57,761 copying build/lib/scine_chemoton/gears/elementary_steps/reaction_rules/distance_rules.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/reaction_rules 2023-05-14T15:26:57,767 creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,769 copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/bond_based.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,775 copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,780 copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/connectivity_analyzer.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,784 copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/fast_dissociations.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,789 copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/fragment_based.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,795 copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/template_based.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/trial_generator 2023-05-14T15:26:57,801 copying build/lib/scine_chemoton/gears/kinetics.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,806 copying build/lib/scine_chemoton/gears/reaction.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,812 creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/conformers 2023-05-14T15:26:57,813 copying build/lib/scine_chemoton/gears/conformers/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/conformers 2023-05-14T15:26:57,817 copying build/lib/scine_chemoton/gears/conformers/brute_force.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears/conformers 2023-05-14T15:26:57,822 copying build/lib/scine_chemoton/gears/compound.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,827 copying build/lib/scine_chemoton/gears/thermo.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,831 copying build/lib/scine_chemoton/gears/scheduler.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,835 copying build/lib/scine_chemoton/gears/pathfinder.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/gears 2023-05-14T15:26:57,841 copying build/lib/scine_chemoton/default_settings.py -> build/bdist.linux-armv7l/wheel/scine_chemoton 2023-05-14T15:26:57,845 copying build/lib/scine_chemoton/engine.py -> build/bdist.linux-armv7l/wheel/scine_chemoton 2023-05-14T15:26:57,849 creating build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,851 copying build/lib/scine_chemoton/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,855 copying build/lib/scine_chemoton/utilities/compound_and_flask_creation.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,858 copying build/lib/scine_chemoton/utilities/calculation_creation_helpers.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,862 copying build/lib/scine_chemoton/utilities/insert_concentration.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,865 copying build/lib/scine_chemoton/utilities/comparisons.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,869 copying build/lib/scine_chemoton/utilities/get_molecular_formula.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,872 copying build/lib/scine_chemoton/utilities/insert_initial_structure.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,877 creating build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:57,878 copying build/lib/scine_chemoton/utilities/reactive_complexes/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:57,882 copying build/lib/scine_chemoton/utilities/reactive_complexes/lebedev_sphere.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:57,915 copying build/lib/scine_chemoton/utilities/reactive_complexes/inter_reactive_complexes.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:57,921 copying build/lib/scine_chemoton/utilities/reactive_complexes/unit_circle.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/reactive_complexes 2023-05-14T15:26:57,925 copying build/lib/scine_chemoton/utilities/energy_query_functions.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,929 copying build/lib/scine_chemoton/utilities/queries.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,934 copying build/lib/scine_chemoton/utilities/masm.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/utilities 2023-05-14T15:26:57,938 copying build/lib/scine_chemoton/__main__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton 2023-05-14T15:26:57,944 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests 2023-05-14T15:26:57,946 copying build/lib/scine_chemoton/tests/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests 2023-05-14T15:26:57,949 copying build/lib/scine_chemoton/tests/test_database_setup.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests 2023-05-14T15:26:57,955 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears 2023-05-14T15:26:57,957 copying build/lib/scine_chemoton/tests/gears/test_thermo.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears 2023-05-14T15:26:57,962 copying build/lib/scine_chemoton/tests/gears/test_compound.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears 2023-05-14T15:26:57,967 copying build/lib/scine_chemoton/tests/gears/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears 2023-05-14T15:26:57,970 copying build/lib/scine_chemoton/tests/gears/test_kinetics.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears 2023-05-14T15:26:57,977 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/kinetic_modeling 2023-05-14T15:26:57,978 copying build/lib/scine_chemoton/tests/gears/kinetic_modeling/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/kinetic_modeling 2023-05-14T15:26:57,982 copying build/lib/scine_chemoton/tests/gears/kinetic_modeling/test_kinetic_modeling.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/kinetic_modeling 2023-05-14T15:26:57,988 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,989 copying build/lib/scine_chemoton/tests/gears/elementary_steps/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,993 copying build/lib/scine_chemoton/tests/gears/elementary_steps/test_reactive_site_filters.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:57,999 copying build/lib/scine_chemoton/tests/gears/elementary_steps/test_brute_force.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:58,003 copying build/lib/scine_chemoton/tests/gears/elementary_steps/test_minimal.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:58,009 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:58,011 copying build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:58,015 copying build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator/test_fragment_based.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:58,021 copying build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator/test_bond_based.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:58,028 copying build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator/test_connectivity_analyzer.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:58,032 copying build/lib/scine_chemoton/tests/gears/elementary_steps/trial_generator/test_fast_dissociations.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps/trial_generator 2023-05-14T15:26:58,037 copying build/lib/scine_chemoton/tests/gears/elementary_steps/test_further_dissociations_reactive_site_filters.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:58,042 copying build/lib/scine_chemoton/tests/gears/elementary_steps/mock_trial_generator.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/elementary_steps 2023-05-14T15:26:58,046 copying build/lib/scine_chemoton/tests/gears/test_reaction.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears 2023-05-14T15:26:58,052 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/conformers 2023-05-14T15:26:58,053 copying build/lib/scine_chemoton/tests/gears/conformers/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/conformers 2023-05-14T15:26:58,057 copying build/lib/scine_chemoton/tests/gears/conformers/test_brute_force.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears/conformers 2023-05-14T15:26:58,062 copying build/lib/scine_chemoton/tests/gears/test_scheduler.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears 2023-05-14T15:26:58,065 copying build/lib/scine_chemoton/tests/gears/test_refinement.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/gears 2023-05-14T15:26:58,073 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests/resources 2023-05-14T15:26:58,075 copying build/lib/scine_chemoton/tests/resources/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/resources 2023-05-14T15:26:58,080 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities 2023-05-14T15:26:58,082 copying build/lib/scine_chemoton/tests/utilities/queries_test.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities 2023-05-14T15:26:58,086 copying build/lib/scine_chemoton/tests/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities 2023-05-14T15:26:58,090 copying build/lib/scine_chemoton/tests/utilities/test_insert_initial_structure.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities 2023-05-14T15:26:58,094 copying build/lib/scine_chemoton/tests/utilities/test_masm.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities 2023-05-14T15:26:58,098 copying build/lib/scine_chemoton/tests/utilities/test_insert_concentration.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities 2023-05-14T15:26:58,104 creating build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:58,105 copying build/lib/scine_chemoton/tests/utilities/reactive_complexes/test_lebedev_sphere.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:58,109 copying build/lib/scine_chemoton/tests/utilities/reactive_complexes/test_masm_pruning.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:58,113 copying build/lib/scine_chemoton/tests/utilities/reactive_complexes/__init__.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:58,117 copying build/lib/scine_chemoton/tests/utilities/reactive_complexes/test_unit_circle.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:58,121 copying build/lib/scine_chemoton/tests/utilities/reactive_complexes/test_inter_reactive_complexes.py -> build/bdist.linux-armv7l/wheel/scine_chemoton/tests/utilities/reactive_complexes 2023-05-14T15:26:58,127 running install_egg_info 2023-05-14T15:26:58,197 Copying scine_chemoton.egg-info to build/bdist.linux-armv7l/wheel/scine_chemoton-3.0.0-py3.7.egg-info 2023-05-14T15:26:58,222 running install_scripts 2023-05-14T15:26:58,265 creating build/bdist.linux-armv7l/wheel/scine_chemoton-3.0.0.dist-info/WHEEL 2023-05-14T15:26:58,271 creating '/tmp/pip-wheel-2cvzznxl/scine_chemoton-3.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-14T15:26:58,277 adding 'scine_chemoton/__init__.py' 2023-05-14T15:26:58,282 adding 'scine_chemoton/__main__.py' 2023-05-14T15:26:58,286 adding 'scine_chemoton/_version.py' 2023-05-14T15:26:58,289 adding 'scine_chemoton/default_settings.py' 2023-05-14T15:26:58,293 adding 'scine_chemoton/engine.py' 2023-05-14T15:26:58,299 adding 'scine_chemoton/gears/__init__.py' 2023-05-14T15:26:58,305 adding 'scine_chemoton/gears/compound.py' 2023-05-14T15:26:58,315 adding 'scine_chemoton/gears/kinetics.py' 2023-05-14T15:26:58,331 adding 'scine_chemoton/gears/pathfinder.py' 2023-05-14T15:26:58,339 adding 'scine_chemoton/gears/reaction.py' 2023-05-14T15:26:58,352 adding 'scine_chemoton/gears/refinement.py' 2023-05-14T15:26:58,358 adding 'scine_chemoton/gears/rerun_calculations.py' 2023-05-14T15:26:58,362 adding 'scine_chemoton/gears/scheduler.py' 2023-05-14T15:26:58,367 adding 'scine_chemoton/gears/thermo.py' 2023-05-14T15:26:58,371 adding 'scine_chemoton/gears/conformers/__init__.py' 2023-05-14T15:26:58,376 adding 'scine_chemoton/gears/conformers/brute_force.py' 2023-05-14T15:26:58,383 adding 'scine_chemoton/gears/elementary_steps/__init__.py' 2023-05-14T15:26:58,394 adding 'scine_chemoton/gears/elementary_steps/aggregate_filters.py' 2023-05-14T15:26:58,398 adding 'scine_chemoton/gears/elementary_steps/brute_force.py' 2023-05-14T15:26:58,402 adding 'scine_chemoton/gears/elementary_steps/minimal.py' 2023-05-14T15:26:58,406 adding 'scine_chemoton/gears/elementary_steps/minimum_energy_conformer.py' 2023-05-14T15:26:58,413 adding 'scine_chemoton/gears/elementary_steps/reactive_site_filters.py' 2023-05-14T15:26:58,418 adding 'scine_chemoton/gears/elementary_steps/reaction_rules/__init__.py' 2023-05-14T15:26:58,423 adding 'scine_chemoton/gears/elementary_steps/reaction_rules/distance_rules.py' 2023-05-14T15:26:58,427 adding 'scine_chemoton/gears/elementary_steps/reaction_rules/element_rules.py' 2023-05-14T15:26:58,431 adding 'scine_chemoton/gears/elementary_steps/reaction_rules/polarization_rules.py' 2023-05-14T15:26:58,437 adding 'scine_chemoton/gears/elementary_steps/trial_generator/__init__.py' 2023-05-14T15:26:58,449 adding 'scine_chemoton/gears/elementary_steps/trial_generator/bond_based.py' 2023-05-14T15:26:58,454 adding 'scine_chemoton/gears/elementary_steps/trial_generator/connectivity_analyzer.py' 2023-05-14T15:26:58,464 adding 'scine_chemoton/gears/elementary_steps/trial_generator/fast_dissociations.py' 2023-05-14T15:26:58,477 adding 'scine_chemoton/gears/elementary_steps/trial_generator/fragment_based.py' 2023-05-14T15:26:58,487 adding 'scine_chemoton/gears/elementary_steps/trial_generator/template_based.py' 2023-05-14T15:26:58,491 adding 'scine_chemoton/gears/kinetic_modeling/__init__.py' 2023-05-14T15:26:58,495 adding 'scine_chemoton/gears/kinetic_modeling/concentration_query_functions.py' 2023-05-14T15:26:58,500 adding 'scine_chemoton/gears/kinetic_modeling/kinetic_modeling.py' 2023-05-14T15:26:58,507 adding 'scine_chemoton/gears/kinetic_modeling/prepare_kinetic_modeling_job.py' 2023-05-14T15:26:58,511 adding 'scine_chemoton/tests/__init__.py' 2023-05-14T15:26:58,518 adding 'scine_chemoton/tests/test_database_setup.py' 2023-05-14T15:26:58,522 adding 'scine_chemoton/tests/gears/__init__.py' 2023-05-14T15:26:58,527 adding 'scine_chemoton/tests/gears/test_compound.py' 2023-05-14T15:26:58,534 adding 'scine_chemoton/tests/gears/test_kinetics.py' 2023-05-14T15:26:58,539 adding 'scine_chemoton/tests/gears/test_reaction.py' 2023-05-14T15:26:58,546 adding 'scine_chemoton/tests/gears/test_refinement.py' 2023-05-14T15:26:58,549 adding 'scine_chemoton/tests/gears/test_scheduler.py' 2023-05-14T15:26:58,553 adding 'scine_chemoton/tests/gears/test_thermo.py' 2023-05-14T15:26:58,556 adding 'scine_chemoton/tests/gears/conformers/__init__.py' 2023-05-14T15:26:58,560 adding 'scine_chemoton/tests/gears/conformers/test_brute_force.py' 2023-05-14T15:26:58,564 adding 'scine_chemoton/tests/gears/elementary_steps/__init__.py' 2023-05-14T15:26:58,567 adding 'scine_chemoton/tests/gears/elementary_steps/mock_trial_generator.py' 2023-05-14T15:26:58,570 adding 'scine_chemoton/tests/gears/elementary_steps/test_brute_force.py' 2023-05-14T15:26:58,574 adding 'scine_chemoton/tests/gears/elementary_steps/test_further_dissociations_reactive_site_filters.py' 2023-05-14T15:26:58,577 adding 'scine_chemoton/tests/gears/elementary_steps/test_minimal.py' 2023-05-14T15:26:58,584 adding 'scine_chemoton/tests/gears/elementary_steps/test_reactive_site_filters.py' 2023-05-14T15:26:58,588 adding 'scine_chemoton/tests/gears/elementary_steps/trial_generator/__init__.py' 2023-05-14T15:26:58,596 adding 'scine_chemoton/tests/gears/elementary_steps/trial_generator/test_bond_based.py' 2023-05-14T15:26:58,601 adding 'scine_chemoton/tests/gears/elementary_steps/trial_generator/test_connectivity_analyzer.py' 2023-05-14T15:26:58,605 adding 'scine_chemoton/tests/gears/elementary_steps/trial_generator/test_fast_dissociations.py' 2023-05-14T15:26:58,610 adding 'scine_chemoton/tests/gears/elementary_steps/trial_generator/test_fragment_based.py' 2023-05-14T15:26:58,615 adding 'scine_chemoton/tests/gears/kinetic_modeling/__init__.py' 2023-05-14T15:26:58,618 adding 'scine_chemoton/tests/gears/kinetic_modeling/test_kinetic_modeling.py' 2023-05-14T15:26:58,622 adding 'scine_chemoton/tests/resources/__init__.py' 2023-05-14T15:26:58,626 adding 'scine_chemoton/tests/utilities/__init__.py' 2023-05-14T15:26:58,629 adding 'scine_chemoton/tests/utilities/queries_test.py' 2023-05-14T15:26:58,632 adding 'scine_chemoton/tests/utilities/test_insert_concentration.py' 2023-05-14T15:26:58,635 adding 'scine_chemoton/tests/utilities/test_insert_initial_structure.py' 2023-05-14T15:26:58,637 adding 'scine_chemoton/tests/utilities/test_masm.py' 2023-05-14T15:26:58,641 adding 'scine_chemoton/tests/utilities/reactive_complexes/__init__.py' 2023-05-14T15:26:58,647 adding 'scine_chemoton/tests/utilities/reactive_complexes/test_inter_reactive_complexes.py' 2023-05-14T15:26:58,650 adding 'scine_chemoton/tests/utilities/reactive_complexes/test_lebedev_sphere.py' 2023-05-14T15:26:58,653 adding 'scine_chemoton/tests/utilities/reactive_complexes/test_masm_pruning.py' 2023-05-14T15:26:58,655 adding 'scine_chemoton/tests/utilities/reactive_complexes/test_unit_circle.py' 2023-05-14T15:26:58,659 adding 'scine_chemoton/utilities/__init__.py' 2023-05-14T15:26:58,662 adding 'scine_chemoton/utilities/calculation_creation_helpers.py' 2023-05-14T15:26:58,664 adding 'scine_chemoton/utilities/comparisons.py' 2023-05-14T15:26:58,667 adding 'scine_chemoton/utilities/compound_and_flask_creation.py' 2023-05-14T15:26:58,671 adding 'scine_chemoton/utilities/energy_query_functions.py' 2023-05-14T15:26:58,674 adding 'scine_chemoton/utilities/get_molecular_formula.py' 2023-05-14T15:26:58,677 adding 'scine_chemoton/utilities/insert_concentration.py' 2023-05-14T15:26:58,680 adding 'scine_chemoton/utilities/insert_initial_structure.py' 2023-05-14T15:26:58,684 adding 'scine_chemoton/utilities/masm.py' 2023-05-14T15:26:58,689 adding 'scine_chemoton/utilities/queries.py' 2023-05-14T15:26:58,694 adding 'scine_chemoton/utilities/reactive_complexes/__init__.py' 2023-05-14T15:26:58,706 adding 'scine_chemoton/utilities/reactive_complexes/inter_reactive_complexes.py' 2023-05-14T15:26:58,917 adding 'scine_chemoton/utilities/reactive_complexes/lebedev_sphere.py' 2023-05-14T15:26:58,933 adding 'scine_chemoton/utilities/reactive_complexes/unit_circle.py' 2023-05-14T15:26:58,938 adding 'scine_chemoton-3.0.0.dist-info/METADATA' 2023-05-14T15:26:58,940 adding 'scine_chemoton-3.0.0.dist-info/WHEEL' 2023-05-14T15:26:58,942 adding 'scine_chemoton-3.0.0.dist-info/top_level.txt' 2023-05-14T15:26:58,945 adding 'scine_chemoton-3.0.0.dist-info/RECORD' 2023-05-14T15:26:58,963 removing build/bdist.linux-armv7l/wheel 2023-05-14T15:26:59,171 Building wheel for scine-chemoton (setup.py): finished with status 'done' 2023-05-14T15:26:59,188 Created wheel for scine-chemoton: filename=scine_chemoton-3.0.0-py3-none-any.whl size=334697 sha256=142b37dc057e4e04aba6221fb4e3091c233c070dc65225e6e46d7bacdbd428f3 2023-05-14T15:26:59,190 Stored in directory: /tmp/pip-ephem-wheel-cache-ok9fqxvr/wheels/c2/f4/ca/a3ca1c0673734efe6dd1956e8f44298353fcc471c155e19a88 2023-05-14T15:26:59,225 Successfully built scine-chemoton 2023-05-14T15:26:59,257 Removed build tracker: '/tmp/pip-build-tracker-rzxrd37b'