2023-05-14T17:18:26,185 Created temporary directory: /tmp/pip-build-tracker-poru1tou 2023-05-14T17:18:26,186 Initialized build tracking at /tmp/pip-build-tracker-poru1tou 2023-05-14T17:18:26,186 Created build tracker: /tmp/pip-build-tracker-poru1tou 2023-05-14T17:18:26,187 Entered build tracker: /tmp/pip-build-tracker-poru1tou 2023-05-14T17:18:26,187 Created temporary directory: /tmp/pip-wheel-_doig3bu 2023-05-14T17:18:26,191 Created temporary directory: /tmp/pip-ephem-wheel-cache-s4kkpbp8 2023-05-14T17:18:26,215 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-14T17:18:26,219 2 location(s) to search for versions of sparsesem: 2023-05-14T17:18:26,219 * https://pypi.org/simple/sparsesem/ 2023-05-14T17:18:26,219 * https://www.piwheels.org/simple/sparsesem/ 2023-05-14T17:18:26,219 Fetching project page and analyzing links: https://pypi.org/simple/sparsesem/ 2023-05-14T17:18:26,220 Getting page https://pypi.org/simple/sparsesem/ 2023-05-14T17:18:26,221 Found index url https://pypi.org/simple/ 2023-05-14T17:18:26,275 Fetched page https://pypi.org/simple/sparsesem/ as application/vnd.pypi.simple.v1+json 2023-05-14T17:18:26,276 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/28/bf/ecaae6871258dfae1b301abb0b1db6b31cc664b14fecd39ba450853b1c2f/sparseSEM-1.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-05-14T17:18:26,277 Found link https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 1.0 2023-05-14T17:18:26,277 Fetching project page and analyzing links: https://www.piwheels.org/simple/sparsesem/ 2023-05-14T17:18:26,277 Getting page https://www.piwheels.org/simple/sparsesem/ 2023-05-14T17:18:26,278 Found index url https://www.piwheels.org/simple/ 2023-05-14T17:18:26,450 Fetched page https://www.piwheels.org/simple/sparsesem/ as text/html 2023-05-14T17:18:26,451 Skipping link: not a file: https://www.piwheels.org/simple/sparsesem/ 2023-05-14T17:18:26,451 Skipping link: not a file: https://pypi.org/simple/sparsesem/ 2023-05-14T17:18:26,468 Given no hashes to check 1 links for project 'sparsesem': discarding no candidates 2023-05-14T17:18:26,484 Collecting sparsesem==1.0 2023-05-14T17:18:26,487 Created temporary directory: /tmp/pip-unpack-o87s1mli 2023-05-14T17:18:26,560 Downloading sparseSEM-1.0.tar.gz (4.8 MB) 2023-05-14T17:18:27,194 Added sparsesem==1.0 from https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz to build tracker '/tmp/pip-build-tracker-poru1tou' 2023-05-14T17:18:27,195 Running setup.py (path:/tmp/pip-wheel-_doig3bu/sparsesem_523ae5708f7b4a75adff9c9a80192824/setup.py) egg_info for package sparsesem 2023-05-14T17:18:27,196 Created temporary directory: /tmp/pip-pip-egg-info-u09o4quf 2023-05-14T17:18:27,196 Preparing metadata (setup.py): started 2023-05-14T17:18:27,197 Running command python setup.py egg_info 2023-05-14T17:18:27,886 /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-05-14T17:18:27,887 !! 2023-05-14T17:18:27,887 ******************************************************************************** 2023-05-14T17:18:27,887 Requirements should be satisfied by a PEP 517 installer. 2023-05-14T17:18:27,887 If you are using pip, you can try `pip install --use-pep517`. 2023-05-14T17:18:27,888 ******************************************************************************** 2023-05-14T17:18:27,888 !! 2023-05-14T17:18:27,888 dist.fetch_build_eggs(dist.setup_requires) 2023-05-14T17:18:28,039 running egg_info 2023-05-14T17:18:28,040 creating /tmp/pip-pip-egg-info-u09o4quf/sparseSEM.egg-info 2023-05-14T17:18:28,065 writing /tmp/pip-pip-egg-info-u09o4quf/sparseSEM.egg-info/PKG-INFO 2023-05-14T17:18:28,067 writing dependency_links to /tmp/pip-pip-egg-info-u09o4quf/sparseSEM.egg-info/dependency_links.txt 2023-05-14T17:18:28,069 writing requirements to /tmp/pip-pip-egg-info-u09o4quf/sparseSEM.egg-info/requires.txt 2023-05-14T17:18:28,071 writing top-level names to /tmp/pip-pip-egg-info-u09o4quf/sparseSEM.egg-info/top_level.txt 2023-05-14T17:18:28,072 writing manifest file '/tmp/pip-pip-egg-info-u09o4quf/sparseSEM.egg-info/SOURCES.txt' 2023-05-14T17:18:28,383 reading manifest file '/tmp/pip-pip-egg-info-u09o4quf/sparseSEM.egg-info/SOURCES.txt' 2023-05-14T17:18:28,385 reading manifest template 'MANIFEST.in' 2023-05-14T17:18:28,391 writing manifest file '/tmp/pip-pip-egg-info-u09o4quf/sparseSEM.egg-info/SOURCES.txt' 2023-05-14T17:18:28,472 Preparing metadata (setup.py): finished with status 'done' 2023-05-14T17:18:28,478 Source in /tmp/pip-wheel-_doig3bu/sparsesem_523ae5708f7b4a75adff9c9a80192824 has version 1.0, which satisfies requirement sparsesem==1.0 from https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz 2023-05-14T17:18:28,479 Removed sparsesem==1.0 from https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz from build tracker '/tmp/pip-build-tracker-poru1tou' 2023-05-14T17:18:28,486 Created temporary directory: /tmp/pip-unpack-bew4qye4 2023-05-14T17:18:28,487 Building wheels for collected packages: sparsesem 2023-05-14T17:18:28,491 Created temporary directory: /tmp/pip-wheel-_npiibp1 2023-05-14T17:18:28,492 Building wheel for sparsesem (setup.py): started 2023-05-14T17:18:28,493 Destination directory: /tmp/pip-wheel-_npiibp1 2023-05-14T17:18:28,493 Running command python setup.py bdist_wheel 2023-05-14T17:18:29,187 /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-05-14T17:18:29,188 !! 2023-05-14T17:18:29,188 ******************************************************************************** 2023-05-14T17:18:29,189 Requirements should be satisfied by a PEP 517 installer. 2023-05-14T17:18:29,189 If you are using pip, you can try `pip install --use-pep517`. 2023-05-14T17:18:29,189 ******************************************************************************** 2023-05-14T17:18:29,189 !! 2023-05-14T17:18:29,189 dist.fetch_build_eggs(dist.setup_requires) 2023-05-14T17:18:29,381 running bdist_wheel 2023-05-14T17:18:29,667 running build 2023-05-14T17:18:29,667 running build_py 2023-05-14T17:18:29,695 creating build 2023-05-14T17:18:29,696 creating build/lib.linux-aarch64-cpython-39 2023-05-14T17:18:29,697 creating build/lib.linux-aarch64-cpython-39/sparseSEM 2023-05-14T17:18:29,698 copying sparseSEM/elasticNetSMLpoint.py -> build/lib.linux-aarch64-cpython-39/sparseSEM 2023-05-14T17:18:29,701 copying sparseSEM/__init__.py -> build/lib.linux-aarch64-cpython-39/sparseSEM 2023-05-14T17:18:29,703 copying sparseSEM/elasticNetSML.py -> build/lib.linux-aarch64-cpython-39/sparseSEM 2023-05-14T17:18:29,705 copying sparseSEM/loadSEMlib.py -> build/lib.linux-aarch64-cpython-39/sparseSEM 2023-05-14T17:18:29,707 copying sparseSEM/elasticNetSMLcv.py -> build/lib.linux-aarch64-cpython-39/sparseSEM 2023-05-14T17:18:29,709 running egg_info 2023-05-14T17:18:29,759 writing sparseSEM.egg-info/PKG-INFO 2023-05-14T17:18:29,761 writing dependency_links to sparseSEM.egg-info/dependency_links.txt 2023-05-14T17:18:29,763 writing requirements to sparseSEM.egg-info/requires.txt 2023-05-14T17:18:29,764 writing top-level names to sparseSEM.egg-info/top_level.txt 2023-05-14T17:18:29,793 reading manifest file 'sparseSEM.egg-info/SOURCES.txt' 2023-05-14T17:18:29,796 reading manifest template 'MANIFEST.in' 2023-05-14T17:18:29,801 writing manifest file 'sparseSEM.egg-info/SOURCES.txt' 2023-05-14T17:18:29,804 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'sparseSEM.src' is absent from the `packages` configuration. 2023-05-14T17:18:29,805 !! 2023-05-14T17:18:29,805 ******************************************************************************** 2023-05-14T17:18:29,805 ############################ 2023-05-14T17:18:29,805 # Package would be ignored # 2023-05-14T17:18:29,805 ############################ 2023-05-14T17:18:29,806 Python recognizes 'sparseSEM.src' as an importable package[^1], 2023-05-14T17:18:29,806 but it is absent from setuptools' `packages` configuration. 2023-05-14T17:18:29,806 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-14T17:18:29,806 package, please make sure that 'sparseSEM.src' is explicitly added 2023-05-14T17:18:29,806 to the `packages` configuration field. 2023-05-14T17:18:29,807 Alternatively, you can also rely on setuptools' discovery methods 2023-05-14T17:18:29,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-14T17:18:29,807 instead of `find_packages(...)`/`find:`). 2023-05-14T17:18:29,807 You can read more about "package discovery" on setuptools documentation page: 2023-05-14T17:18:29,807 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-14T17:18:29,808 If you don't want 'sparseSEM.src' to be distributed and are 2023-05-14T17:18:29,808 already explicitly excluding 'sparseSEM.src' via 2023-05-14T17:18:29,809 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-14T17:18:29,810 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-14T17:18:29,810 combination with a more fine grained `package-data` configuration. 2023-05-14T17:18:29,810 You can read more about "package data files" on setuptools documentation page: 2023-05-14T17:18:29,810 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-14T17:18:29,811 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-14T17:18:29,811 even if it does not contain any `.py` files. 2023-05-14T17:18:29,811 On the other hand, currently there is no concept of package data 2023-05-14T17:18:29,811 directory, all directories are treated like packages. 2023-05-14T17:18:29,811 ******************************************************************************** 2023-05-14T17:18:29,811 !! 2023-05-14T17:18:29,812 check.warn(importable) 2023-05-14T17:18:29,812 copying sparseSEM/sparseSEM.cpython-310-darwin.so -> build/lib.linux-aarch64-cpython-39/sparseSEM 2023-05-14T17:18:29,812 creating build/lib.linux-aarch64-cpython-39/sparseSEM/src 2023-05-14T17:18:29,813 copying sparseSEM/src/lassoSEM.c -> build/lib.linux-aarch64-cpython-39/sparseSEM/src 2023-05-14T17:18:29,817 copying sparseSEM/src/lassoSEM.h -> build/lib.linux-aarch64-cpython-39/sparseSEM/src 2023-05-14T17:18:29,819 copying sparseSEM/src/lassoSMLv11beta.c -> build/lib.linux-aarch64-cpython-39/sparseSEM/src 2023-05-14T17:18:29,823 running build_ext 2023-05-14T17:18:29,830 building 'sparseSEM' extension 2023-05-14T17:18:29,831 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -L/opt/intel/oneapi/mkl/2023.1.0/lib -L/usr/lib -lmkl_rt -o build/lib.linux-aarch64-cpython-39/sparseSEM.cpython-39-arm-linux-gnueabihf.so 2023-05-14T17:18:29,857 /usr/bin/ld: cannot find -lmkl_rt 2023-05-14T17:18:29,871 collect2: error: ld returned 1 exit status 2023-05-14T17:18:29,874 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-05-14T17:18:29,969 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-05-14T17:18:29,987 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-05-14T17:18:29,987 exec(compile('"'"''"'"''"'"' 2023-05-14T17:18:29,987 # This is -- a caller that pip uses to run setup.py 2023-05-14T17:18:29,987 # 2023-05-14T17:18:29,987 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-05-14T17:18:29,987 # import from `distutils.core` to work with newer packaging standards. 2023-05-14T17:18:29,987 # - It provides a clear error message when setuptools is not installed. 2023-05-14T17:18:29,987 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-05-14T17:18:29,987 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-05-14T17:18:29,987 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-05-14T17:18:29,987 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-05-14T17:18:29,987 import os, sys, tokenize 2023-05-14T17:18:29,987 2023-05-14T17:18:29,987 try: 2023-05-14T17:18:29,987 import setuptools 2023-05-14T17:18:29,987 except ImportError as error: 2023-05-14T17:18:29,987 print( 2023-05-14T17:18:29,987 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-05-14T17:18:29,987 "the build environment.", 2023-05-14T17:18:29,987 file=sys.stderr, 2023-05-14T17:18:29,987 ) 2023-05-14T17:18:29,987 sys.exit(1) 2023-05-14T17:18:29,987 2023-05-14T17:18:29,987 __file__ = %r 2023-05-14T17:18:29,987 sys.argv[0] = __file__ 2023-05-14T17:18:29,987 2023-05-14T17:18:29,987 if os.path.exists(__file__): 2023-05-14T17:18:29,987 filename = __file__ 2023-05-14T17:18:29,987 with tokenize.open(__file__) as f: 2023-05-14T17:18:29,987 setup_py_code = f.read() 2023-05-14T17:18:29,987 else: 2023-05-14T17:18:29,987 filename = "" 2023-05-14T17:18:29,987 setup_py_code = "from setuptools import setup; setup()" 2023-05-14T17:18:29,987 2023-05-14T17:18:29,987 exec(compile(setup_py_code, filename, "exec")) 2023-05-14T17:18:29,987 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-_doig3bu/sparsesem_523ae5708f7b4a75adff9c9a80192824/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-_npiibp1[/] 2023-05-14T17:18:29,987 [bold magenta]cwd[/]: /tmp/pip-wheel-_doig3bu/sparsesem_523ae5708f7b4a75adff9c9a80192824/ 2023-05-14T17:18:29,987 Building wheel for sparsesem (setup.py): finished with status 'error' 2023-05-14T17:18:29,988 ERROR: Failed building wheel for sparsesem 2023-05-14T17:18:29,989 Running setup.py clean for sparsesem 2023-05-14T17:18:29,990 Running command python setup.py clean 2023-05-14T17:18:30,669 /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-05-14T17:18:30,669 !! 2023-05-14T17:18:30,670 ******************************************************************************** 2023-05-14T17:18:30,670 Requirements should be satisfied by a PEP 517 installer. 2023-05-14T17:18:30,670 If you are using pip, you can try `pip install --use-pep517`. 2023-05-14T17:18:30,670 ******************************************************************************** 2023-05-14T17:18:30,670 !! 2023-05-14T17:18:30,670 dist.fetch_build_eggs(dist.setup_requires) 2023-05-14T17:18:30,819 running clean 2023-05-14T17:18:30,868 removing 'build/lib.linux-aarch64-cpython-39' (and everything under it) 2023-05-14T17:18:30,873 'build/bdist.linux-aarch64' does not exist -- can't clean it 2023-05-14T17:18:30,874 'build/scripts-3.9' does not exist -- can't clean it 2023-05-14T17:18:30,874 removing 'build' 2023-05-14T17:18:30,945 Failed to build sparsesem 2023-05-14T17:18:30,947 ERROR: Failed to build one or more wheels 2023-05-14T17:18:30,949 Exception information: 2023-05-14T17:18:30,949 Traceback (most recent call last): 2023-05-14T17:18:30,949 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-05-14T17:18:30,949 status = run_func(*args) 2023-05-14T17:18:30,949 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-05-14T17:18:30,949 return func(self, options, args) 2023-05-14T17:18:30,949 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-05-14T17:18:30,949 raise CommandError("Failed to build one or more wheels") 2023-05-14T17:18:30,949 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-05-14T17:18:30,951 Removed build tracker: '/tmp/pip-build-tracker-poru1tou'