2023-05-15T20:15:55,748 Created temporary directory: /tmp/pip-build-tracker-pjvytt8x 2023-05-15T20:15:55,751 Initialized build tracking at /tmp/pip-build-tracker-pjvytt8x 2023-05-15T20:15:55,751 Created build tracker: /tmp/pip-build-tracker-pjvytt8x 2023-05-15T20:15:55,752 Entered build tracker: /tmp/pip-build-tracker-pjvytt8x 2023-05-15T20:15:55,753 Created temporary directory: /tmp/pip-wheel-nrif_mnc 2023-05-15T20:15:55,762 Created temporary directory: /tmp/pip-ephem-wheel-cache-u3_s82ci 2023-05-15T20:15:55,813 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-15T20:15:55,822 2 location(s) to search for versions of simba-ml: 2023-05-15T20:15:55,822 * https://pypi.org/simple/simba-ml/ 2023-05-15T20:15:55,822 * https://www.piwheels.org/simple/simba-ml/ 2023-05-15T20:15:55,823 Fetching project page and analyzing links: https://pypi.org/simple/simba-ml/ 2023-05-15T20:15:55,824 Getting page https://pypi.org/simple/simba-ml/ 2023-05-15T20:15:55,827 Found index url https://pypi.org/simple/ 2023-05-15T20:15:56,010 Fetched page https://pypi.org/simple/simba-ml/ as application/vnd.pypi.simple.v1+json 2023-05-15T20:15:56,020 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/34/ce/8d95cd497712488dd271c83826df69db5fcd4445d9c874348523772b7039/simba_ml-1.0.0a1-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,020 Found link https://files.pythonhosted.org/packages/53/2c/8e19c5b852856db2152a70ab4066a41a944be34c7f5af1af8f8c3aea1522/simba_ml-1.0.0a1.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0a1 2023-05-15T20:15:56,021 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/18/e1/d0ceff7f5b36c69bf49a9f32d97fa32642501c2eed10740c59060b2a715c/simba_ml-1.0.0a2-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,022 Found link https://files.pythonhosted.org/packages/27/88/84703e15aabb3a54383e17201643296672f254c7f303b8ce29a3161af1d1/simba_ml-1.0.0a2.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0a2 2023-05-15T20:15:56,023 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/26/81/e02e09ed6cc862a989cd6a084b21d145654d1ed8be6d933eabe86349bc01/simba_ml-1.0.0a3-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,023 Found link https://files.pythonhosted.org/packages/22/44/23f2eae8da6c5cc1fa3eb3c7c9dc821d82f39095749e3bde020034c890e3/simba_ml-1.0.0a3.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0a3 2023-05-15T20:15:56,024 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/84/ef/a9eb9abe5f344883c5957488ea9ea97578911ed20ecc2389491bb6ed8a83/simba_ml-1.0.0a4-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,024 Found link https://files.pythonhosted.org/packages/16/11/30649e538a0018a2cbdc2979ed67b8658ce19dd8b43e7260b2d98e6751a2/simba_ml-1.0.0a4.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0a4 2023-05-15T20:15:56,025 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/a5/c7/ffa43f4b48fec0e4b2158a4266c26103b9fa51f53a04b615b1419349cce6/simba_ml-1.0.0a5-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,026 Found link https://files.pythonhosted.org/packages/27/f2/2c643b8a890ee6432cee08f9b1de728cb56fb8fe241800140798a5c4a661/simba_ml-1.0.0a5.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0a5 2023-05-15T20:15:56,026 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/a1/fb/b7d0b596b08a3e777ed9cdad481942454b4f8fa97f8e40356720e2edfd04/simba_ml-1.0.0a6-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,027 Found link https://files.pythonhosted.org/packages/25/96/87486468cb9894d00c26651b5c6d14b68c40ac68411c963f4c80512c3948/simba_ml-1.0.0a6.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0a6 2023-05-15T20:15:56,028 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/a9/0b/c3a311a406f0acb91c18f7bf9ff40805dd51fbcc34c783dc15ce013bba61/simba_ml-1.0.0rc1-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,028 Found link https://files.pythonhosted.org/packages/ac/ac/99ec696444a5bb1035a2401e4e58d586ccfede38dd76205eab0e73f0c680/simba_ml-1.0.0rc1.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0rc1 2023-05-15T20:15:56,029 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/ca/45/8fc07d25f9d06e4ade19feaf8d33749187c7aeed8760b6e98b4ff126af3f/simba_ml-1.0.0rc2-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,029 Found link https://files.pythonhosted.org/packages/6d/2f/287c8854ff0fb499e66c775c2b063e7d028672c455f652e2da2e51611221/simba_ml-1.0.0rc2.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0rc2 2023-05-15T20:15:56,030 Skipping link: No binaries permitted for simba-ml: https://files.pythonhosted.org/packages/de/ed/72a2173179d06b86dfdd8f34e93fce11e3de62252d61a6bc32f293c18b10/simba_ml-1.0.0rc3-py3-none-any.whl (from https://pypi.org/simple/simba-ml/) 2023-05-15T20:15:56,031 Found link https://files.pythonhosted.org/packages/00/16/3db1001ab1916c256d29effac9b67e47e5f46697f6c86472f02344819064/simba_ml-1.0.0rc3.tar.gz (from https://pypi.org/simple/simba-ml/), version: 1.0.0rc3 2023-05-15T20:15:56,032 Fetching project page and analyzing links: https://www.piwheels.org/simple/simba-ml/ 2023-05-15T20:15:56,032 Getting page https://www.piwheels.org/simple/simba-ml/ 2023-05-15T20:15:56,035 Found index url https://www.piwheels.org/simple/ 2023-05-15T20:15:56,248 Fetched page https://www.piwheels.org/simple/simba-ml/ as text/html 2023-05-15T20:15:56,255 Skipping link: No binaries permitted for simba-ml: https://www.piwheels.org/simple/simba-ml/simba_ml-1.0.0rc2-py3-none-any.whl#sha256=ffcb75b5775c07a179d3681629f694f9fd649e9658fca350af9766ca59767c5f (from https://www.piwheels.org/simple/simba-ml/) 2023-05-15T20:15:56,256 Skipping link: No binaries permitted for simba-ml: https://www.piwheels.org/simple/simba-ml/simba_ml-1.0.0rc1-py3-none-any.whl#sha256=8347a826278589e2b4e7a148b6fe4f7247fb3c5f153641b924156228f37cad65 (from https://www.piwheels.org/simple/simba-ml/) 2023-05-15T20:15:56,256 Skipping link: No binaries permitted for simba-ml: https://www.piwheels.org/simple/simba-ml/simba_ml-1.0.0a6-py3-none-any.whl#sha256=161f9f131b2a614f568bbb33201f4a4baa24ef079c5e5afab963d9f1ce7ead5e (from https://www.piwheels.org/simple/simba-ml/) 2023-05-15T20:15:56,257 Skipping link: No binaries permitted for simba-ml: https://www.piwheels.org/simple/simba-ml/simba_ml-1.0.0a5-py3-none-any.whl#sha256=d4b5d6070cbb2879ce4bc9b48c0ba1ce2fd7ea32d5eec16706d0e91c54e9e138 (from https://www.piwheels.org/simple/simba-ml/) 2023-05-15T20:15:56,258 Skipping link: No binaries permitted for simba-ml: https://www.piwheels.org/simple/simba-ml/simba_ml-1.0.0a4-py3-none-any.whl#sha256=bd8f8d2f736b2d8d9a19333d0e90aa26a638e5e9d1f35753c7d4c85f38c638d8 (from https://www.piwheels.org/simple/simba-ml/) 2023-05-15T20:15:56,258 Skipping link: No binaries permitted for simba-ml: https://www.piwheels.org/simple/simba-ml/simba_ml-1.0.0a3-py3-none-any.whl#sha256=cf445dc5e52a8b091ffa52851460dda822ce403ab767e16df090743eb4760c11 (from https://www.piwheels.org/simple/simba-ml/) 2023-05-15T20:15:56,259 Skipping link: No binaries permitted for simba-ml: https://www.piwheels.org/simple/simba-ml/simba_ml-1.0.0a2-py3-none-any.whl#sha256=76454cfb76aa51c75d7762cf9af23f3b244103476184a9f49397c3187e447158 (from https://www.piwheels.org/simple/simba-ml/) 2023-05-15T20:15:56,259 Skipping link: No binaries permitted for simba-ml: https://www.piwheels.org/simple/simba-ml/simba_ml-1.0.0a1-py3-none-any.whl#sha256=9e6febd4bf4ed94a8c1068af3edc34e55e25c6b33323d43939bfd5fb5b0845e7 (from https://www.piwheels.org/simple/simba-ml/) 2023-05-15T20:15:56,260 Skipping link: not a file: https://www.piwheels.org/simple/simba-ml/ 2023-05-15T20:15:56,260 Skipping link: not a file: https://pypi.org/simple/simba-ml/ 2023-05-15T20:15:56,296 Given no hashes to check 1 links for project 'simba-ml': discarding no candidates 2023-05-15T20:15:56,326 Collecting simba-ml==1.0.0rc3 2023-05-15T20:15:56,331 Created temporary directory: /tmp/pip-unpack-e_x3knfr 2023-05-15T20:15:56,618 Downloading simba_ml-1.0.0rc3.tar.gz (70 kB) 2023-05-15T20:15:57,276 Added simba-ml==1.0.0rc3 from https://files.pythonhosted.org/packages/00/16/3db1001ab1916c256d29effac9b67e47e5f46697f6c86472f02344819064/simba_ml-1.0.0rc3.tar.gz to build tracker '/tmp/pip-build-tracker-pjvytt8x' 2023-05-15T20:15:57,288 Created temporary directory: /tmp/pip-build-env-ecwhcgg9 2023-05-15T20:15:57,309 Installing build dependencies: started 2023-05-15T20:15:57,312 Running command pip subprocess to install build dependencies 2023-05-15T20:15:59,999 Using pip 23.1.2 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2023-05-15T20:16:00,748 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-15T20:16:04,692 Collecting setuptools>=42 2023-05-15T20:16:04,936 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.7.2-py3-none-any.whl (1.1 MB) 2023-05-15T20:16:05,564 Collecting wheel==0.30.0 2023-05-15T20:16:05,596 Downloading https://www.piwheels.org/simple/wheel/wheel-0.30.0-py2.py3-none-any.whl (49 kB) 2023-05-15T20:16:05,641 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.8/49.8 kB 2.0 MB/s eta 0:00:00 2023-05-15T20:16:05,932 Collecting versioneer-518 2023-05-15T20:16:05,966 Using cached https://www.piwheels.org/simple/versioneer-518/versioneer_518-0.19-py2.py3-none-any.whl (17 kB) 2023-05-15T20:16:10,386 Installing collected packages: wheel, versioneer-518, setuptools 2023-05-15T20:16:10,719 Creating /tmp/pip-build-env-ecwhcgg9/overlay/bin 2023-05-15T20:16:10,723 changing mode of /tmp/pip-build-env-ecwhcgg9/overlay/bin/wheel to 755 2023-05-15T20:16:15,342 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2023-05-15T20:16:15,343 scikit-build 0.17.4 requires wheel>=0.32.0, but you have wheel 0.30.0 which is incompatible. 2023-05-15T20:16:15,344 Successfully installed setuptools-67.7.2 versioneer-518-0.19 wheel-0.30.0 2023-05-15T20:16:15,797 Installing build dependencies: finished with status 'done' 2023-05-15T20:16:15,809 Getting requirements to build wheel: started 2023-05-15T20:16:15,811 Running command Getting requirements to build wheel 2023-05-15T20:16:17,423 Warning: build in /tmp/pip-build-env-ecwhcgg9/overlay/lib/python3.7/site-packages is using versioneer.py from /tmp/pip-wheel-nrif_mnc/simba-ml_c2ba5f45c11e4df189c45e1ccc9a743e/versioneer.py 2023-05-15T20:16:17,424 1.0.0rc3 2023-05-15T20:16:17,425 running egg_info 2023-05-15T20:16:17,438 writing simba_ml.egg-info/PKG-INFO 2023-05-15T20:16:17,443 writing dependency_links to simba_ml.egg-info/dependency_links.txt 2023-05-15T20:16:17,447 writing entry points to simba_ml.egg-info/entry_points.txt 2023-05-15T20:16:17,451 writing requirements to simba_ml.egg-info/requires.txt 2023-05-15T20:16:17,454 writing top-level names to simba_ml.egg-info/top_level.txt 2023-05-15T20:16:17,530 reading manifest file 'simba_ml.egg-info/SOURCES.txt' 2023-05-15T20:16:17,543 reading manifest template 'MANIFEST.in' 2023-05-15T20:16:17,568 writing manifest file 'simba_ml.egg-info/SOURCES.txt' 2023-05-15T20:16:17,689 Getting requirements to build wheel: finished with status 'done' 2023-05-15T20:16:17,709 Created temporary directory: /tmp/pip-modern-metadata-o1s6rggi 2023-05-15T20:16:17,715 Preparing metadata (pyproject.toml): started 2023-05-15T20:16:17,717 Running command Preparing metadata (pyproject.toml) 2023-05-15T20:16:19,107 Warning: build in /tmp/pip-build-env-ecwhcgg9/overlay/lib/python3.7/site-packages is using versioneer.py from /tmp/pip-wheel-nrif_mnc/simba-ml_c2ba5f45c11e4df189c45e1ccc9a743e/versioneer.py 2023-05-15T20:16:19,108 1.0.0rc3 2023-05-15T20:16:19,108 running dist_info 2023-05-15T20:16:19,134 creating /tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info 2023-05-15T20:16:19,143 writing /tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info/PKG-INFO 2023-05-15T20:16:19,147 writing dependency_links to /tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info/dependency_links.txt 2023-05-15T20:16:19,151 writing entry points to /tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info/entry_points.txt 2023-05-15T20:16:19,154 writing requirements to /tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info/requires.txt 2023-05-15T20:16:19,157 writing top-level names to /tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info/top_level.txt 2023-05-15T20:16:19,159 writing manifest file '/tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info/SOURCES.txt' 2023-05-15T20:16:19,232 reading manifest file '/tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info/SOURCES.txt' 2023-05-15T20:16:19,237 reading manifest template 'MANIFEST.in' 2023-05-15T20:16:19,256 writing manifest file '/tmp/pip-modern-metadata-o1s6rggi/simba_ml.egg-info/SOURCES.txt' 2023-05-15T20:16:19,259 creating '/tmp/pip-modern-metadata-o1s6rggi/simba_ml-1.0.0rc3.dist-info' 2023-05-15T20:16:19,723 Preparing metadata (pyproject.toml): finished with status 'done' 2023-05-15T20:16:19,738 Source in /tmp/pip-wheel-nrif_mnc/simba-ml_c2ba5f45c11e4df189c45e1ccc9a743e has version 1.0.0rc3, which satisfies requirement simba-ml==1.0.0rc3 from https://files.pythonhosted.org/packages/00/16/3db1001ab1916c256d29effac9b67e47e5f46697f6c86472f02344819064/simba_ml-1.0.0rc3.tar.gz 2023-05-15T20:16:19,740 Removed simba-ml==1.0.0rc3 from https://files.pythonhosted.org/packages/00/16/3db1001ab1916c256d29effac9b67e47e5f46697f6c86472f02344819064/simba_ml-1.0.0rc3.tar.gz from build tracker '/tmp/pip-build-tracker-pjvytt8x' 2023-05-15T20:16:19,749 Created temporary directory: /tmp/pip-unpack-hssoq03x 2023-05-15T20:16:19,751 Building wheels for collected packages: simba-ml 2023-05-15T20:16:19,759 Created temporary directory: /tmp/pip-wheel-3li2p4o5 2023-05-15T20:16:19,760 Destination directory: /tmp/pip-wheel-3li2p4o5 2023-05-15T20:16:19,765 Building wheel for simba-ml (pyproject.toml): started 2023-05-15T20:16:19,767 Running command Building wheel for simba-ml (pyproject.toml) 2023-05-15T20:16:21,348 Warning: build in /tmp/pip-build-env-ecwhcgg9/overlay/lib/python3.7/site-packages is using versioneer.py from /tmp/pip-wheel-nrif_mnc/simba-ml_c2ba5f45c11e4df189c45e1ccc9a743e/versioneer.py 2023-05-15T20:16:21,350 1.0.0rc3 2023-05-15T20:16:21,350 running bdist_wheel 2023-05-15T20:16:21,379 running build 2023-05-15T20:16:21,379 running build_py 2023-05-15T20:16:21,394 Warning: build in /tmp/pip-build-env-ecwhcgg9/overlay/lib/python3.7/site-packages is using versioneer.py from /tmp/pip-wheel-nrif_mnc/simba-ml_c2ba5f45c11e4df189c45e1ccc9a743e/versioneer.py 2023-05-15T20:16:21,395 Warning: build in /tmp/pip-build-env-ecwhcgg9/overlay/lib/python3.7/site-packages is using versioneer.py from /tmp/pip-wheel-nrif_mnc/simba-ml_c2ba5f45c11e4df189c45e1ccc9a743e/versioneer.py 2023-05-15T20:16:21,395 creating build 2023-05-15T20:16:21,396 creating build/lib 2023-05-15T20:16:21,397 creating build/lib/simba_ml 2023-05-15T20:16:21,399 copying simba_ml/__init__.py -> build/lib/simba_ml 2023-05-15T20:16:21,404 copying simba_ml/_version.py -> build/lib/simba_ml 2023-05-15T20:16:21,407 copying simba_ml/error_handler.py -> build/lib/simba_ml 2023-05-15T20:16:21,413 creating build/lib/simba_ml/simulation 2023-05-15T20:16:21,415 copying simba_ml/simulation/__init__.py -> build/lib/simba_ml/simulation 2023-05-15T20:16:21,418 copying simba_ml/simulation/species.py -> build/lib/simba_ml/simulation 2023-05-15T20:16:21,424 creating build/lib/simba_ml/example_problems 2023-05-15T20:16:21,426 copying simba_ml/example_problems/constant_function.py -> build/lib/simba_ml/example_problems 2023-05-15T20:16:21,430 copying simba_ml/example_problems/__init__.py -> build/lib/simba_ml/example_problems 2023-05-15T20:16:21,434 copying simba_ml/example_problems/salt_and_brine_tanks.py -> build/lib/simba_ml/example_problems 2023-05-15T20:16:21,438 copying simba_ml/example_problems/trigonometry.py -> build/lib/simba_ml/example_problems 2023-05-15T20:16:21,442 copying simba_ml/example_problems/sird.py -> build/lib/simba_ml/example_problems 2023-05-15T20:16:21,446 copying simba_ml/example_problems/sir.py -> build/lib/simba_ml/example_problems 2023-05-15T20:16:21,451 creating build/lib/simba_ml/prediction 2023-05-15T20:16:21,453 copying simba_ml/prediction/__init__.py -> build/lib/simba_ml/prediction 2023-05-15T20:16:21,457 copying simba_ml/prediction/plugin_loader.py -> build/lib/simba_ml/prediction 2023-05-15T20:16:21,461 copying simba_ml/prediction/normalizer.py -> build/lib/simba_ml/prediction 2023-05-15T20:16:21,465 copying simba_ml/prediction/preprocessing.py -> build/lib/simba_ml/prediction 2023-05-15T20:16:21,470 creating build/lib/simba_ml/cli 2023-05-15T20:16:21,472 copying simba_ml/cli/start_prediction.py -> build/lib/simba_ml/cli 2023-05-15T20:16:21,476 copying simba_ml/cli/__init__.py -> build/lib/simba_ml/cli 2023-05-15T20:16:21,480 copying simba_ml/cli/generate_data.py -> build/lib/simba_ml/cli 2023-05-15T20:16:21,483 copying simba_ml/cli/__main__.py -> build/lib/simba_ml/cli 2023-05-15T20:16:21,489 creating build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,491 copying simba_ml/simulation/sparsifier/sequential_sparsifier.py -> build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,495 copying simba_ml/simulation/sparsifier/__init__.py -> build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,499 copying simba_ml/simulation/sparsifier/constant_suffix_remover.py -> build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,503 copying simba_ml/simulation/sparsifier/sparsifier.py -> build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,506 copying simba_ml/simulation/sparsifier/keep_extreme_values_sparsifier.py -> build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,510 copying simba_ml/simulation/sparsifier/no_sparsifier.py -> build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,513 copying simba_ml/simulation/sparsifier/interval_sparsifier.py -> build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,518 copying simba_ml/simulation/sparsifier/random_sample_sparsifier.py -> build/lib/simba_ml/simulation/sparsifier 2023-05-15T20:16:21,523 creating build/lib/simba_ml/simulation/system_model 2023-05-15T20:16:21,525 copying simba_ml/simulation/system_model/system_model.py -> build/lib/simba_ml/simulation/system_model 2023-05-15T20:16:21,529 copying simba_ml/simulation/system_model/__init__.py -> build/lib/simba_ml/simulation/system_model 2023-05-15T20:16:21,533 copying simba_ml/simulation/system_model/system_model_interface.py -> build/lib/simba_ml/simulation/system_model 2023-05-15T20:16:21,538 creating build/lib/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:21,541 copying simba_ml/simulation/kinetic_parameters/dict_based_kinetic_parameter.py -> build/lib/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:21,545 copying simba_ml/simulation/kinetic_parameters/__init__.py -> build/lib/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:21,548 copying simba_ml/simulation/kinetic_parameters/kinetic_parameter.py -> build/lib/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:21,552 copying simba_ml/simulation/kinetic_parameters/function_based_kinetic_parameter.py -> build/lib/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:21,555 copying simba_ml/simulation/kinetic_parameters/constant_kinetic_parameter.py -> build/lib/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:21,561 creating build/lib/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:21,563 copying simba_ml/simulation/derivative_noiser/sequential_deriv_noiser.py -> build/lib/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:21,567 copying simba_ml/simulation/derivative_noiser/multi_deriv_noiser.py -> build/lib/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:21,570 copying simba_ml/simulation/derivative_noiser/multiplicative_deriv_noiser.py -> build/lib/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:21,574 copying simba_ml/simulation/derivative_noiser/__init__.py -> build/lib/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:21,578 copying simba_ml/simulation/derivative_noiser/no_deriv_noiser.py -> build/lib/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:21,581 copying simba_ml/simulation/derivative_noiser/additive_deriv_noiser.py -> build/lib/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:21,585 copying simba_ml/simulation/derivative_noiser/derivative_noiser.py -> build/lib/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:21,591 creating build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,592 copying simba_ml/simulation/noisers/no_noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,596 copying simba_ml/simulation/noisers/elastic_noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,600 copying simba_ml/simulation/noisers/noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,604 copying simba_ml/simulation/noisers/__init__.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,607 copying simba_ml/simulation/noisers/additive_noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,611 copying simba_ml/simulation/noisers/column_noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,615 copying simba_ml/simulation/noisers/adjusting_mean_noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,618 copying simba_ml/simulation/noisers/multi_noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,623 copying simba_ml/simulation/noisers/sequential_noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,626 copying simba_ml/simulation/noisers/multiplicative_noiser.py -> build/lib/simba_ml/simulation/noisers 2023-05-15T20:16:21,631 creating build/lib/simba_ml/simulation/constraints 2023-05-15T20:16:21,633 copying simba_ml/simulation/constraints/constraint.py -> build/lib/simba_ml/simulation/constraints 2023-05-15T20:16:21,637 copying simba_ml/simulation/constraints/keep_species_sum.py -> build/lib/simba_ml/simulation/constraints 2023-05-15T20:16:21,641 copying simba_ml/simulation/constraints/species_value_truncator.py -> build/lib/simba_ml/simulation/constraints 2023-05-15T20:16:21,645 copying simba_ml/simulation/constraints/__init__.py -> build/lib/simba_ml/simulation/constraints 2023-05-15T20:16:21,649 copying simba_ml/simulation/constraints/species_value_in_range.py -> build/lib/simba_ml/simulation/constraints 2023-05-15T20:16:21,654 creating build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,656 copying simba_ml/simulation/distributions/beta_distribution.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,660 copying simba_ml/simulation/distributions/normal_distribution.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,665 copying simba_ml/simulation/distributions/__init__.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,668 copying simba_ml/simulation/distributions/helper_functions.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,672 copying simba_ml/simulation/distributions/lognormal_distribution.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,676 copying simba_ml/simulation/distributions/constant.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,679 copying simba_ml/simulation/distributions/continuous_uniform_distribution.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,683 copying simba_ml/simulation/distributions/vector_distribution.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,687 copying simba_ml/simulation/distributions/distribution.py -> build/lib/simba_ml/simulation/distributions 2023-05-15T20:16:21,692 creating build/lib/simba_ml/simulation/generators 2023-05-15T20:16:21,694 copying simba_ml/simulation/generators/pertubation_generator.py -> build/lib/simba_ml/simulation/generators 2023-05-15T20:16:21,699 copying simba_ml/simulation/generators/__init__.py -> build/lib/simba_ml/simulation/generators 2023-05-15T20:16:21,702 copying simba_ml/simulation/generators/steady_state_generator.py -> build/lib/simba_ml/simulation/generators 2023-05-15T20:16:21,706 copying simba_ml/simulation/generators/generator_interface.py -> build/lib/simba_ml/simulation/generators 2023-05-15T20:16:21,710 copying simba_ml/simulation/generators/time_points_generator.py -> build/lib/simba_ml/simulation/generators 2023-05-15T20:16:21,714 copying simba_ml/simulation/generators/time_series_generator.py -> build/lib/simba_ml/simulation/generators 2023-05-15T20:16:21,719 creating build/lib/simba_ml/prediction/logging 2023-05-15T20:16:21,721 copying simba_ml/prediction/logging/logging_config.py -> build/lib/simba_ml/prediction/logging 2023-05-15T20:16:21,725 copying simba_ml/prediction/logging/__init__.py -> build/lib/simba_ml/prediction/logging 2023-05-15T20:16:21,728 copying simba_ml/prediction/logging/wandb_logger.py -> build/lib/simba_ml/prediction/logging 2023-05-15T20:16:21,733 creating build/lib/simba_ml/prediction/time_series 2023-05-15T20:16:21,734 copying simba_ml/prediction/time_series/__init__.py -> build/lib/simba_ml/prediction/time_series 2023-05-15T20:16:21,739 creating build/lib/simba_ml/prediction/steady_state 2023-05-15T20:16:21,741 copying simba_ml/prediction/steady_state/__init__.py -> build/lib/simba_ml/prediction/steady_state 2023-05-15T20:16:21,747 creating build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,748 copying simba_ml/prediction/time_series/models/transfer_learning_model.py -> build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,753 copying simba_ml/prediction/time_series/models/__init__.py -> build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,756 copying simba_ml/prediction/time_series/models/transfer_learning_factory.py -> build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,760 copying simba_ml/prediction/time_series/models/model_to_transfer_learning_model.py -> build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,763 copying simba_ml/prediction/time_series/models/model.py -> build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,767 copying simba_ml/prediction/time_series/models/average_predictor.py -> build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,771 copying simba_ml/prediction/time_series/models/last_value_predictor.py -> build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,775 copying simba_ml/prediction/time_series/models/factory.py -> build/lib/simba_ml/prediction/time_series/models 2023-05-15T20:16:21,781 creating build/lib/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:21,784 copying simba_ml/prediction/time_series/data_loader/splits.py -> build/lib/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:21,788 copying simba_ml/prediction/time_series/data_loader/__init__.py -> build/lib/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:21,792 copying simba_ml/prediction/time_series/data_loader/transfer_learning_data_loader.py -> build/lib/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:21,797 copying simba_ml/prediction/time_series/data_loader/synthetic_data_loader.py -> build/lib/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:21,801 copying simba_ml/prediction/time_series/data_loader/mixed_data_loader.py -> build/lib/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:21,805 copying simba_ml/prediction/time_series/data_loader/window_generator.py -> build/lib/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:21,811 creating build/lib/simba_ml/prediction/time_series/metrics 2023-05-15T20:16:21,813 copying simba_ml/prediction/time_series/metrics/__init__.py -> build/lib/simba_ml/prediction/time_series/metrics 2023-05-15T20:16:21,817 copying simba_ml/prediction/time_series/metrics/metrics.py -> build/lib/simba_ml/prediction/time_series/metrics 2023-05-15T20:16:21,823 copying simba_ml/prediction/time_series/metrics/factory.py -> build/lib/simba_ml/prediction/time_series/metrics 2023-05-15T20:16:21,828 creating build/lib/simba_ml/prediction/time_series/config 2023-05-15T20:16:21,831 copying simba_ml/prediction/time_series/config/__init__.py -> build/lib/simba_ml/prediction/time_series/config 2023-05-15T20:16:21,835 copying simba_ml/prediction/time_series/config/time_series_config.py -> build/lib/simba_ml/prediction/time_series/config 2023-05-15T20:16:21,841 creating build/lib/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:21,843 copying simba_ml/prediction/time_series/pipelines/synthetic_data_pipeline.py -> build/lib/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:21,848 copying simba_ml/prediction/time_series/pipelines/__init__.py -> build/lib/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:21,853 copying simba_ml/prediction/time_series/pipelines/mixed_data_pipeline.py -> build/lib/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:21,857 copying simba_ml/prediction/time_series/pipelines/transfer_learning_pipeline.py -> build/lib/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:21,863 creating build/lib/simba_ml/prediction/time_series/models/pytorch_lightning 2023-05-15T20:16:21,865 copying simba_ml/prediction/time_series/models/pytorch_lightning/pytorch_lightning_model.py -> build/lib/simba_ml/prediction/time_series/models/pytorch_lightning 2023-05-15T20:16:21,870 copying simba_ml/prediction/time_series/models/pytorch_lightning/__init__.py -> build/lib/simba_ml/prediction/time_series/models/pytorch_lightning 2023-05-15T20:16:21,875 copying simba_ml/prediction/time_series/models/pytorch_lightning/dense_neural_network.py -> build/lib/simba_ml/prediction/time_series/models/pytorch_lightning 2023-05-15T20:16:21,881 creating build/lib/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:21,882 copying simba_ml/prediction/time_series/models/sk_learn/support_vector_machine_regressor.py -> build/lib/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:21,886 copying simba_ml/prediction/time_series/models/sk_learn/__init__.py -> build/lib/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:21,890 copying simba_ml/prediction/time_series/models/sk_learn/sk_learn_model.py -> build/lib/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:21,894 copying simba_ml/prediction/time_series/models/sk_learn/decision_tree_regressor.py -> build/lib/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:21,897 copying simba_ml/prediction/time_series/models/sk_learn/random_forest_regressor.py -> build/lib/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:21,901 copying simba_ml/prediction/time_series/models/sk_learn/nearest_neighbors_regressor.py -> build/lib/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:21,904 copying simba_ml/prediction/time_series/models/sk_learn/linear_regressor.py -> build/lib/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:21,909 creating build/lib/simba_ml/prediction/time_series/models/keras 2023-05-15T20:16:21,911 copying simba_ml/prediction/time_series/models/keras/__init__.py -> build/lib/simba_ml/prediction/time_series/models/keras 2023-05-15T20:16:21,915 copying simba_ml/prediction/time_series/models/keras/dense_neural_network.py -> build/lib/simba_ml/prediction/time_series/models/keras 2023-05-15T20:16:21,918 copying simba_ml/prediction/time_series/models/keras/keras_model.py -> build/lib/simba_ml/prediction/time_series/models/keras 2023-05-15T20:16:21,924 creating build/lib/simba_ml/prediction/time_series/config/synthetic_data_pipeline 2023-05-15T20:16:21,925 copying simba_ml/prediction/time_series/config/synthetic_data_pipeline/__init__.py -> build/lib/simba_ml/prediction/time_series/config/synthetic_data_pipeline 2023-05-15T20:16:21,929 copying simba_ml/prediction/time_series/config/synthetic_data_pipeline/pipeline_config.py -> build/lib/simba_ml/prediction/time_series/config/synthetic_data_pipeline 2023-05-15T20:16:21,933 copying simba_ml/prediction/time_series/config/synthetic_data_pipeline/data_config.py -> build/lib/simba_ml/prediction/time_series/config/synthetic_data_pipeline 2023-05-15T20:16:21,938 creating build/lib/simba_ml/prediction/time_series/config/transfer_learning_pipeline 2023-05-15T20:16:21,940 copying simba_ml/prediction/time_series/config/transfer_learning_pipeline/__init__.py -> build/lib/simba_ml/prediction/time_series/config/transfer_learning_pipeline 2023-05-15T20:16:21,944 copying simba_ml/prediction/time_series/config/transfer_learning_pipeline/pipeline_config.py -> build/lib/simba_ml/prediction/time_series/config/transfer_learning_pipeline 2023-05-15T20:16:21,947 copying simba_ml/prediction/time_series/config/transfer_learning_pipeline/data_config.py -> build/lib/simba_ml/prediction/time_series/config/transfer_learning_pipeline 2023-05-15T20:16:21,952 creating build/lib/simba_ml/prediction/time_series/config/mixed_data_pipeline 2023-05-15T20:16:21,954 copying simba_ml/prediction/time_series/config/mixed_data_pipeline/__init__.py -> build/lib/simba_ml/prediction/time_series/config/mixed_data_pipeline 2023-05-15T20:16:21,958 copying simba_ml/prediction/time_series/config/mixed_data_pipeline/pipeline_config.py -> build/lib/simba_ml/prediction/time_series/config/mixed_data_pipeline 2023-05-15T20:16:21,962 copying simba_ml/prediction/time_series/config/mixed_data_pipeline/data_config.py -> build/lib/simba_ml/prediction/time_series/config/mixed_data_pipeline 2023-05-15T20:16:21,967 creating build/lib/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:21,969 copying simba_ml/prediction/steady_state/data_loader/dataset_generator.py -> build/lib/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:21,973 copying simba_ml/prediction/steady_state/data_loader/splits.py -> build/lib/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:21,976 copying simba_ml/prediction/steady_state/data_loader/__init__.py -> build/lib/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:21,980 copying simba_ml/prediction/steady_state/data_loader/mixed_data_loader.py -> build/lib/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:21,986 creating build/lib/simba_ml/prediction/steady_state/config 2023-05-15T20:16:21,987 copying simba_ml/prediction/steady_state/config/__init__.py -> build/lib/simba_ml/prediction/steady_state/config 2023-05-15T20:16:21,991 copying simba_ml/prediction/steady_state/config/steady_state_data_config.py -> build/lib/simba_ml/prediction/steady_state/config 2023-05-15T20:16:21,996 creating build/lib/simba_ml/cli/problem_viewer 2023-05-15T20:16:21,998 copying simba_ml/cli/problem_viewer/problem_viewer.py -> build/lib/simba_ml/cli/problem_viewer 2023-05-15T20:16:22,002 copying simba_ml/cli/problem_viewer/__init__.py -> build/lib/simba_ml/cli/problem_viewer 2023-05-15T20:16:22,005 copying simba_ml/cli/problem_viewer/run_problem_viewer.py -> build/lib/simba_ml/cli/problem_viewer 2023-05-15T20:16:22,088 UPDATING build/lib/simba_ml/_version.py 2023-05-15T20:16:22,088 set build/lib/simba_ml/_version.py to '1.0.0rc3' 2023-05-15T20:16:22,088 installing to build/bdist.linux-armv7l/wheel 2023-05-15T20:16:22,089 running install 2023-05-15T20:16:22,150 running install_lib 2023-05-15T20:16:22,166 creating build/bdist.linux-armv7l 2023-05-15T20:16:22,167 creating build/bdist.linux-armv7l/wheel 2023-05-15T20:16:22,171 creating build/bdist.linux-armv7l/wheel/simba_ml 2023-05-15T20:16:22,174 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation 2023-05-15T20:16:22,178 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,180 copying build/lib/simba_ml/simulation/sparsifier/sequential_sparsifier.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,185 copying build/lib/simba_ml/simulation/sparsifier/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,189 copying build/lib/simba_ml/simulation/sparsifier/constant_suffix_remover.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,193 copying build/lib/simba_ml/simulation/sparsifier/sparsifier.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,197 copying build/lib/simba_ml/simulation/sparsifier/keep_extreme_values_sparsifier.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,201 copying build/lib/simba_ml/simulation/sparsifier/no_sparsifier.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,205 copying build/lib/simba_ml/simulation/sparsifier/interval_sparsifier.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,209 copying build/lib/simba_ml/simulation/sparsifier/random_sample_sparsifier.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/sparsifier 2023-05-15T20:16:22,215 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation/system_model 2023-05-15T20:16:22,217 copying build/lib/simba_ml/simulation/system_model/system_model.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/system_model 2023-05-15T20:16:22,222 copying build/lib/simba_ml/simulation/system_model/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/system_model 2023-05-15T20:16:22,226 copying build/lib/simba_ml/simulation/system_model/system_model_interface.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/system_model 2023-05-15T20:16:22,231 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:22,233 copying build/lib/simba_ml/simulation/kinetic_parameters/dict_based_kinetic_parameter.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:22,238 copying build/lib/simba_ml/simulation/kinetic_parameters/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:22,242 copying build/lib/simba_ml/simulation/kinetic_parameters/kinetic_parameter.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:22,246 copying build/lib/simba_ml/simulation/kinetic_parameters/function_based_kinetic_parameter.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:22,250 copying build/lib/simba_ml/simulation/kinetic_parameters/constant_kinetic_parameter.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/kinetic_parameters 2023-05-15T20:16:22,254 copying build/lib/simba_ml/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation 2023-05-15T20:16:22,259 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:22,261 copying build/lib/simba_ml/simulation/derivative_noiser/sequential_deriv_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:22,265 copying build/lib/simba_ml/simulation/derivative_noiser/multi_deriv_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:22,268 copying build/lib/simba_ml/simulation/derivative_noiser/multiplicative_deriv_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:22,273 copying build/lib/simba_ml/simulation/derivative_noiser/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:22,276 copying build/lib/simba_ml/simulation/derivative_noiser/no_deriv_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:22,280 copying build/lib/simba_ml/simulation/derivative_noiser/additive_deriv_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:22,284 copying build/lib/simba_ml/simulation/derivative_noiser/derivative_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/derivative_noiser 2023-05-15T20:16:22,289 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,290 copying build/lib/simba_ml/simulation/noisers/no_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,295 copying build/lib/simba_ml/simulation/noisers/elastic_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,298 copying build/lib/simba_ml/simulation/noisers/noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,302 copying build/lib/simba_ml/simulation/noisers/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,306 copying build/lib/simba_ml/simulation/noisers/additive_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,309 copying build/lib/simba_ml/simulation/noisers/column_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,313 copying build/lib/simba_ml/simulation/noisers/adjusting_mean_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,317 copying build/lib/simba_ml/simulation/noisers/multi_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,320 copying build/lib/simba_ml/simulation/noisers/sequential_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,324 copying build/lib/simba_ml/simulation/noisers/multiplicative_noiser.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/noisers 2023-05-15T20:16:22,329 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation/constraints 2023-05-15T20:16:22,331 copying build/lib/simba_ml/simulation/constraints/constraint.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/constraints 2023-05-15T20:16:22,335 copying build/lib/simba_ml/simulation/constraints/keep_species_sum.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/constraints 2023-05-15T20:16:22,339 copying build/lib/simba_ml/simulation/constraints/species_value_truncator.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/constraints 2023-05-15T20:16:22,343 copying build/lib/simba_ml/simulation/constraints/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/constraints 2023-05-15T20:16:22,346 copying build/lib/simba_ml/simulation/constraints/species_value_in_range.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/constraints 2023-05-15T20:16:22,351 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,353 copying build/lib/simba_ml/simulation/distributions/beta_distribution.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,357 copying build/lib/simba_ml/simulation/distributions/normal_distribution.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,361 copying build/lib/simba_ml/simulation/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,365 copying build/lib/simba_ml/simulation/distributions/helper_functions.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,368 copying build/lib/simba_ml/simulation/distributions/lognormal_distribution.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,372 copying build/lib/simba_ml/simulation/distributions/constant.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,375 copying build/lib/simba_ml/simulation/distributions/continuous_uniform_distribution.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,379 copying build/lib/simba_ml/simulation/distributions/vector_distribution.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,383 copying build/lib/simba_ml/simulation/distributions/distribution.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/distributions 2023-05-15T20:16:22,387 creating build/bdist.linux-armv7l/wheel/simba_ml/simulation/generators 2023-05-15T20:16:22,389 copying build/lib/simba_ml/simulation/generators/pertubation_generator.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/generators 2023-05-15T20:16:22,394 copying build/lib/simba_ml/simulation/generators/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/generators 2023-05-15T20:16:22,398 copying build/lib/simba_ml/simulation/generators/steady_state_generator.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/generators 2023-05-15T20:16:22,403 copying build/lib/simba_ml/simulation/generators/generator_interface.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/generators 2023-05-15T20:16:22,406 copying build/lib/simba_ml/simulation/generators/time_points_generator.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/generators 2023-05-15T20:16:22,410 copying build/lib/simba_ml/simulation/generators/time_series_generator.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation/generators 2023-05-15T20:16:22,414 copying build/lib/simba_ml/simulation/species.py -> build/bdist.linux-armv7l/wheel/simba_ml/simulation 2023-05-15T20:16:22,418 creating build/bdist.linux-armv7l/wheel/simba_ml/example_problems 2023-05-15T20:16:22,420 copying build/lib/simba_ml/example_problems/constant_function.py -> build/bdist.linux-armv7l/wheel/simba_ml/example_problems 2023-05-15T20:16:22,424 copying build/lib/simba_ml/example_problems/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/example_problems 2023-05-15T20:16:22,428 copying build/lib/simba_ml/example_problems/salt_and_brine_tanks.py -> build/bdist.linux-armv7l/wheel/simba_ml/example_problems 2023-05-15T20:16:22,431 copying build/lib/simba_ml/example_problems/trigonometry.py -> build/bdist.linux-armv7l/wheel/simba_ml/example_problems 2023-05-15T20:16:22,435 copying build/lib/simba_ml/example_problems/sird.py -> build/bdist.linux-armv7l/wheel/simba_ml/example_problems 2023-05-15T20:16:22,438 copying build/lib/simba_ml/example_problems/sir.py -> build/bdist.linux-armv7l/wheel/simba_ml/example_problems 2023-05-15T20:16:22,442 copying build/lib/simba_ml/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml 2023-05-15T20:16:22,446 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction 2023-05-15T20:16:22,449 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/logging 2023-05-15T20:16:22,451 copying build/lib/simba_ml/prediction/logging/logging_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/logging 2023-05-15T20:16:22,455 copying build/lib/simba_ml/prediction/logging/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/logging 2023-05-15T20:16:22,458 copying build/lib/simba_ml/prediction/logging/wandb_logger.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/logging 2023-05-15T20:16:22,463 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series 2023-05-15T20:16:22,465 copying build/lib/simba_ml/prediction/time_series/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series 2023-05-15T20:16:22,469 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,471 copying build/lib/simba_ml/prediction/time_series/models/transfer_learning_model.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,476 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/pytorch_lightning 2023-05-15T20:16:22,478 copying build/lib/simba_ml/prediction/time_series/models/pytorch_lightning/pytorch_lightning_model.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/pytorch_lightning 2023-05-15T20:16:22,483 copying build/lib/simba_ml/prediction/time_series/models/pytorch_lightning/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/pytorch_lightning 2023-05-15T20:16:22,486 copying build/lib/simba_ml/prediction/time_series/models/pytorch_lightning/dense_neural_network.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/pytorch_lightning 2023-05-15T20:16:22,491 copying build/lib/simba_ml/prediction/time_series/models/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,494 copying build/lib/simba_ml/prediction/time_series/models/transfer_learning_factory.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,498 copying build/lib/simba_ml/prediction/time_series/models/model_to_transfer_learning_model.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,501 copying build/lib/simba_ml/prediction/time_series/models/model.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,505 copying build/lib/simba_ml/prediction/time_series/models/average_predictor.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,508 copying build/lib/simba_ml/prediction/time_series/models/last_value_predictor.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,512 copying build/lib/simba_ml/prediction/time_series/models/factory.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models 2023-05-15T20:16:22,517 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:22,518 copying build/lib/simba_ml/prediction/time_series/models/sk_learn/support_vector_machine_regressor.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:22,522 copying build/lib/simba_ml/prediction/time_series/models/sk_learn/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:22,526 copying build/lib/simba_ml/prediction/time_series/models/sk_learn/sk_learn_model.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:22,529 copying build/lib/simba_ml/prediction/time_series/models/sk_learn/decision_tree_regressor.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:22,533 copying build/lib/simba_ml/prediction/time_series/models/sk_learn/random_forest_regressor.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:22,537 copying build/lib/simba_ml/prediction/time_series/models/sk_learn/nearest_neighbors_regressor.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:22,540 copying build/lib/simba_ml/prediction/time_series/models/sk_learn/linear_regressor.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/sk_learn 2023-05-15T20:16:22,545 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/keras 2023-05-15T20:16:22,546 copying build/lib/simba_ml/prediction/time_series/models/keras/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/keras 2023-05-15T20:16:22,550 copying build/lib/simba_ml/prediction/time_series/models/keras/dense_neural_network.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/keras 2023-05-15T20:16:22,554 copying build/lib/simba_ml/prediction/time_series/models/keras/keras_model.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/models/keras 2023-05-15T20:16:22,559 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:22,561 copying build/lib/simba_ml/prediction/time_series/data_loader/splits.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:22,565 copying build/lib/simba_ml/prediction/time_series/data_loader/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:22,568 copying build/lib/simba_ml/prediction/time_series/data_loader/transfer_learning_data_loader.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:22,572 copying build/lib/simba_ml/prediction/time_series/data_loader/synthetic_data_loader.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:22,575 copying build/lib/simba_ml/prediction/time_series/data_loader/mixed_data_loader.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:22,579 copying build/lib/simba_ml/prediction/time_series/data_loader/window_generator.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/data_loader 2023-05-15T20:16:22,584 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/metrics 2023-05-15T20:16:22,585 copying build/lib/simba_ml/prediction/time_series/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/metrics 2023-05-15T20:16:22,589 copying build/lib/simba_ml/prediction/time_series/metrics/metrics.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/metrics 2023-05-15T20:16:22,593 copying build/lib/simba_ml/prediction/time_series/metrics/factory.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/metrics 2023-05-15T20:16:22,598 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config 2023-05-15T20:16:22,602 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/synthetic_data_pipeline 2023-05-15T20:16:22,604 copying build/lib/simba_ml/prediction/time_series/config/synthetic_data_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/synthetic_data_pipeline 2023-05-15T20:16:22,609 copying build/lib/simba_ml/prediction/time_series/config/synthetic_data_pipeline/pipeline_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/synthetic_data_pipeline 2023-05-15T20:16:22,614 copying build/lib/simba_ml/prediction/time_series/config/synthetic_data_pipeline/data_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/synthetic_data_pipeline 2023-05-15T20:16:22,618 copying build/lib/simba_ml/prediction/time_series/config/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config 2023-05-15T20:16:22,623 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/transfer_learning_pipeline 2023-05-15T20:16:22,625 copying build/lib/simba_ml/prediction/time_series/config/transfer_learning_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/transfer_learning_pipeline 2023-05-15T20:16:22,628 copying build/lib/simba_ml/prediction/time_series/config/transfer_learning_pipeline/pipeline_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/transfer_learning_pipeline 2023-05-15T20:16:22,632 copying build/lib/simba_ml/prediction/time_series/config/transfer_learning_pipeline/data_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/transfer_learning_pipeline 2023-05-15T20:16:22,636 copying build/lib/simba_ml/prediction/time_series/config/time_series_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config 2023-05-15T20:16:22,640 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/mixed_data_pipeline 2023-05-15T20:16:22,642 copying build/lib/simba_ml/prediction/time_series/config/mixed_data_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/mixed_data_pipeline 2023-05-15T20:16:22,646 copying build/lib/simba_ml/prediction/time_series/config/mixed_data_pipeline/pipeline_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/mixed_data_pipeline 2023-05-15T20:16:22,649 copying build/lib/simba_ml/prediction/time_series/config/mixed_data_pipeline/data_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/config/mixed_data_pipeline 2023-05-15T20:16:22,654 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:22,656 copying build/lib/simba_ml/prediction/time_series/pipelines/synthetic_data_pipeline.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:22,660 copying build/lib/simba_ml/prediction/time_series/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:22,663 copying build/lib/simba_ml/prediction/time_series/pipelines/mixed_data_pipeline.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:22,667 copying build/lib/simba_ml/prediction/time_series/pipelines/transfer_learning_pipeline.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/time_series/pipelines 2023-05-15T20:16:22,671 copying build/lib/simba_ml/prediction/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction 2023-05-15T20:16:22,675 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state 2023-05-15T20:16:22,677 copying build/lib/simba_ml/prediction/steady_state/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state 2023-05-15T20:16:22,682 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:22,683 copying build/lib/simba_ml/prediction/steady_state/data_loader/dataset_generator.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:22,687 copying build/lib/simba_ml/prediction/steady_state/data_loader/splits.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:22,691 copying build/lib/simba_ml/prediction/steady_state/data_loader/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:22,695 copying build/lib/simba_ml/prediction/steady_state/data_loader/mixed_data_loader.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state/data_loader 2023-05-15T20:16:22,700 creating build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state/config 2023-05-15T20:16:22,701 copying build/lib/simba_ml/prediction/steady_state/config/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state/config 2023-05-15T20:16:22,705 copying build/lib/simba_ml/prediction/steady_state/config/steady_state_data_config.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction/steady_state/config 2023-05-15T20:16:22,709 copying build/lib/simba_ml/prediction/plugin_loader.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction 2023-05-15T20:16:22,712 copying build/lib/simba_ml/prediction/normalizer.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction 2023-05-15T20:16:22,715 copying build/lib/simba_ml/prediction/preprocessing.py -> build/bdist.linux-armv7l/wheel/simba_ml/prediction 2023-05-15T20:16:22,719 copying build/lib/simba_ml/_version.py -> build/bdist.linux-armv7l/wheel/simba_ml 2023-05-15T20:16:22,724 creating build/bdist.linux-armv7l/wheel/simba_ml/cli 2023-05-15T20:16:22,725 copying build/lib/simba_ml/cli/start_prediction.py -> build/bdist.linux-armv7l/wheel/simba_ml/cli 2023-05-15T20:16:22,729 copying build/lib/simba_ml/cli/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/cli 2023-05-15T20:16:22,734 creating build/bdist.linux-armv7l/wheel/simba_ml/cli/problem_viewer 2023-05-15T20:16:22,735 copying build/lib/simba_ml/cli/problem_viewer/problem_viewer.py -> build/bdist.linux-armv7l/wheel/simba_ml/cli/problem_viewer 2023-05-15T20:16:22,739 copying build/lib/simba_ml/cli/problem_viewer/__init__.py -> build/bdist.linux-armv7l/wheel/simba_ml/cli/problem_viewer 2023-05-15T20:16:22,743 copying build/lib/simba_ml/cli/problem_viewer/run_problem_viewer.py -> build/bdist.linux-armv7l/wheel/simba_ml/cli/problem_viewer 2023-05-15T20:16:22,746 copying build/lib/simba_ml/cli/generate_data.py -> build/bdist.linux-armv7l/wheel/simba_ml/cli 2023-05-15T20:16:22,750 copying build/lib/simba_ml/cli/__main__.py -> build/bdist.linux-armv7l/wheel/simba_ml/cli 2023-05-15T20:16:22,753 copying build/lib/simba_ml/error_handler.py -> build/bdist.linux-armv7l/wheel/simba_ml 2023-05-15T20:16:22,757 running install_egg_info 2023-05-15T20:16:22,804 running egg_info 2023-05-15T20:16:22,814 writing simba_ml.egg-info/PKG-INFO 2023-05-15T20:16:22,817 writing dependency_links to simba_ml.egg-info/dependency_links.txt 2023-05-15T20:16:22,820 writing entry points to simba_ml.egg-info/entry_points.txt 2023-05-15T20:16:22,822 writing requirements to simba_ml.egg-info/requires.txt 2023-05-15T20:16:22,824 writing top-level names to simba_ml.egg-info/top_level.txt 2023-05-15T20:16:22,884 reading manifest file 'simba_ml.egg-info/SOURCES.txt' 2023-05-15T20:16:22,907 reading manifest template 'MANIFEST.in' 2023-05-15T20:16:22,931 writing manifest file 'simba_ml.egg-info/SOURCES.txt' 2023-05-15T20:16:22,935 Copying simba_ml.egg-info to build/bdist.linux-armv7l/wheel/simba_ml-1.0.0rc3-py3.7.egg-info 2023-05-15T20:16:22,959 running install_scripts 2023-05-15T20:16:23,007 creating build/bdist.linux-armv7l/wheel/simba_ml-1.0.0rc3.dist-info/WHEEL 2023-05-15T20:16:23,236 creating '/tmp/pip-wheel-3li2p4o5/.tmp-2et78ita/simba_ml-1.0.0rc3-py3-none-any.whl' and adding '.' to it 2023-05-15T20:16:23,241 adding 'simba_ml/__init__.py' 2023-05-15T20:16:23,243 adding 'simba_ml/_version.py' 2023-05-15T20:16:23,246 adding 'simba_ml/error_handler.py' 2023-05-15T20:16:23,248 adding 'simba_ml/cli/__init__.py' 2023-05-15T20:16:23,250 adding 'simba_ml/cli/__main__.py' 2023-05-15T20:16:23,253 adding 'simba_ml/cli/generate_data.py' 2023-05-15T20:16:23,255 adding 'simba_ml/cli/start_prediction.py' 2023-05-15T20:16:23,257 adding 'simba_ml/cli/problem_viewer/__init__.py' 2023-05-15T20:16:23,260 adding 'simba_ml/cli/problem_viewer/problem_viewer.py' 2023-05-15T20:16:23,262 adding 'simba_ml/cli/problem_viewer/run_problem_viewer.py' 2023-05-15T20:16:23,264 adding 'simba_ml/example_problems/__init__.py' 2023-05-15T20:16:23,266 adding 'simba_ml/example_problems/constant_function.py' 2023-05-15T20:16:23,268 adding 'simba_ml/example_problems/salt_and_brine_tanks.py' 2023-05-15T20:16:23,271 adding 'simba_ml/example_problems/sir.py' 2023-05-15T20:16:23,274 adding 'simba_ml/example_problems/sird.py' 2023-05-15T20:16:23,276 adding 'simba_ml/example_problems/trigonometry.py' 2023-05-15T20:16:23,279 adding 'simba_ml/prediction/__init__.py' 2023-05-15T20:16:23,281 adding 'simba_ml/prediction/normalizer.py' 2023-05-15T20:16:23,284 adding 'simba_ml/prediction/plugin_loader.py' 2023-05-15T20:16:23,286 adding 'simba_ml/prediction/preprocessing.py' 2023-05-15T20:16:23,289 adding 'simba_ml/prediction/logging/__init__.py' 2023-05-15T20:16:23,290 adding 'simba_ml/prediction/logging/logging_config.py' 2023-05-15T20:16:23,293 adding 'simba_ml/prediction/logging/wandb_logger.py' 2023-05-15T20:16:23,295 adding 'simba_ml/prediction/steady_state/__init__.py' 2023-05-15T20:16:23,298 adding 'simba_ml/prediction/steady_state/config/__init__.py' 2023-05-15T20:16:23,300 adding 'simba_ml/prediction/steady_state/config/steady_state_data_config.py' 2023-05-15T20:16:23,303 adding 'simba_ml/prediction/steady_state/data_loader/__init__.py' 2023-05-15T20:16:23,305 adding 'simba_ml/prediction/steady_state/data_loader/dataset_generator.py' 2023-05-15T20:16:23,308 adding 'simba_ml/prediction/steady_state/data_loader/mixed_data_loader.py' 2023-05-15T20:16:23,310 adding 'simba_ml/prediction/steady_state/data_loader/splits.py' 2023-05-15T20:16:23,313 adding 'simba_ml/prediction/time_series/__init__.py' 2023-05-15T20:16:23,315 adding 'simba_ml/prediction/time_series/config/__init__.py' 2023-05-15T20:16:23,317 adding 'simba_ml/prediction/time_series/config/time_series_config.py' 2023-05-15T20:16:23,320 adding 'simba_ml/prediction/time_series/config/mixed_data_pipeline/__init__.py' 2023-05-15T20:16:23,322 adding 'simba_ml/prediction/time_series/config/mixed_data_pipeline/data_config.py' 2023-05-15T20:16:23,324 adding 'simba_ml/prediction/time_series/config/mixed_data_pipeline/pipeline_config.py' 2023-05-15T20:16:23,327 adding 'simba_ml/prediction/time_series/config/synthetic_data_pipeline/__init__.py' 2023-05-15T20:16:23,329 adding 'simba_ml/prediction/time_series/config/synthetic_data_pipeline/data_config.py' 2023-05-15T20:16:23,331 adding 'simba_ml/prediction/time_series/config/synthetic_data_pipeline/pipeline_config.py' 2023-05-15T20:16:23,334 adding 'simba_ml/prediction/time_series/config/transfer_learning_pipeline/__init__.py' 2023-05-15T20:16:23,336 adding 'simba_ml/prediction/time_series/config/transfer_learning_pipeline/data_config.py' 2023-05-15T20:16:23,338 adding 'simba_ml/prediction/time_series/config/transfer_learning_pipeline/pipeline_config.py' 2023-05-15T20:16:23,341 adding 'simba_ml/prediction/time_series/data_loader/__init__.py' 2023-05-15T20:16:23,344 adding 'simba_ml/prediction/time_series/data_loader/mixed_data_loader.py' 2023-05-15T20:16:23,346 adding 'simba_ml/prediction/time_series/data_loader/splits.py' 2023-05-15T20:16:23,348 adding 'simba_ml/prediction/time_series/data_loader/synthetic_data_loader.py' 2023-05-15T20:16:23,351 adding 'simba_ml/prediction/time_series/data_loader/transfer_learning_data_loader.py' 2023-05-15T20:16:23,353 adding 'simba_ml/prediction/time_series/data_loader/window_generator.py' 2023-05-15T20:16:23,356 adding 'simba_ml/prediction/time_series/metrics/__init__.py' 2023-05-15T20:16:23,358 adding 'simba_ml/prediction/time_series/metrics/factory.py' 2023-05-15T20:16:23,362 adding 'simba_ml/prediction/time_series/metrics/metrics.py' 2023-05-15T20:16:23,364 adding 'simba_ml/prediction/time_series/models/__init__.py' 2023-05-15T20:16:23,367 adding 'simba_ml/prediction/time_series/models/average_predictor.py' 2023-05-15T20:16:23,369 adding 'simba_ml/prediction/time_series/models/factory.py' 2023-05-15T20:16:23,372 adding 'simba_ml/prediction/time_series/models/last_value_predictor.py' 2023-05-15T20:16:23,374 adding 'simba_ml/prediction/time_series/models/model.py' 2023-05-15T20:16:23,376 adding 'simba_ml/prediction/time_series/models/model_to_transfer_learning_model.py' 2023-05-15T20:16:23,379 adding 'simba_ml/prediction/time_series/models/transfer_learning_factory.py' 2023-05-15T20:16:23,381 adding 'simba_ml/prediction/time_series/models/transfer_learning_model.py' 2023-05-15T20:16:23,384 adding 'simba_ml/prediction/time_series/models/keras/__init__.py' 2023-05-15T20:16:23,386 adding 'simba_ml/prediction/time_series/models/keras/dense_neural_network.py' 2023-05-15T20:16:23,389 adding 'simba_ml/prediction/time_series/models/keras/keras_model.py' 2023-05-15T20:16:23,392 adding 'simba_ml/prediction/time_series/models/pytorch_lightning/__init__.py' 2023-05-15T20:16:23,395 adding 'simba_ml/prediction/time_series/models/pytorch_lightning/dense_neural_network.py' 2023-05-15T20:16:23,398 adding 'simba_ml/prediction/time_series/models/pytorch_lightning/pytorch_lightning_model.py' 2023-05-15T20:16:23,401 adding 'simba_ml/prediction/time_series/models/sk_learn/__init__.py' 2023-05-15T20:16:23,403 adding 'simba_ml/prediction/time_series/models/sk_learn/decision_tree_regressor.py' 2023-05-15T20:16:23,406 adding 'simba_ml/prediction/time_series/models/sk_learn/linear_regressor.py' 2023-05-15T20:16:23,408 adding 'simba_ml/prediction/time_series/models/sk_learn/nearest_neighbors_regressor.py' 2023-05-15T20:16:23,410 adding 'simba_ml/prediction/time_series/models/sk_learn/random_forest_regressor.py' 2023-05-15T20:16:23,413 adding 'simba_ml/prediction/time_series/models/sk_learn/sk_learn_model.py' 2023-05-15T20:16:23,415 adding 'simba_ml/prediction/time_series/models/sk_learn/support_vector_machine_regressor.py' 2023-05-15T20:16:23,418 adding 'simba_ml/prediction/time_series/pipelines/__init__.py' 2023-05-15T20:16:23,421 adding 'simba_ml/prediction/time_series/pipelines/mixed_data_pipeline.py' 2023-05-15T20:16:23,423 adding 'simba_ml/prediction/time_series/pipelines/synthetic_data_pipeline.py' 2023-05-15T20:16:23,426 adding 'simba_ml/prediction/time_series/pipelines/transfer_learning_pipeline.py' 2023-05-15T20:16:23,429 adding 'simba_ml/simulation/__init__.py' 2023-05-15T20:16:23,432 adding 'simba_ml/simulation/species.py' 2023-05-15T20:16:23,434 adding 'simba_ml/simulation/constraints/__init__.py' 2023-05-15T20:16:23,437 adding 'simba_ml/simulation/constraints/constraint.py' 2023-05-15T20:16:23,439 adding 'simba_ml/simulation/constraints/keep_species_sum.py' 2023-05-15T20:16:23,442 adding 'simba_ml/simulation/constraints/species_value_in_range.py' 2023-05-15T20:16:23,444 adding 'simba_ml/simulation/constraints/species_value_truncator.py' 2023-05-15T20:16:23,446 adding 'simba_ml/simulation/derivative_noiser/__init__.py' 2023-05-15T20:16:23,449 adding 'simba_ml/simulation/derivative_noiser/additive_deriv_noiser.py' 2023-05-15T20:16:23,451 adding 'simba_ml/simulation/derivative_noiser/derivative_noiser.py' 2023-05-15T20:16:23,453 adding 'simba_ml/simulation/derivative_noiser/multi_deriv_noiser.py' 2023-05-15T20:16:23,455 adding 'simba_ml/simulation/derivative_noiser/multiplicative_deriv_noiser.py' 2023-05-15T20:16:23,457 adding 'simba_ml/simulation/derivative_noiser/no_deriv_noiser.py' 2023-05-15T20:16:23,460 adding 'simba_ml/simulation/derivative_noiser/sequential_deriv_noiser.py' 2023-05-15T20:16:23,462 adding 'simba_ml/simulation/distributions/__init__.py' 2023-05-15T20:16:23,465 adding 'simba_ml/simulation/distributions/beta_distribution.py' 2023-05-15T20:16:23,467 adding 'simba_ml/simulation/distributions/constant.py' 2023-05-15T20:16:23,469 adding 'simba_ml/simulation/distributions/continuous_uniform_distribution.py' 2023-05-15T20:16:23,471 adding 'simba_ml/simulation/distributions/distribution.py' 2023-05-15T20:16:23,474 adding 'simba_ml/simulation/distributions/helper_functions.py' 2023-05-15T20:16:23,476 adding 'simba_ml/simulation/distributions/lognormal_distribution.py' 2023-05-15T20:16:23,478 adding 'simba_ml/simulation/distributions/normal_distribution.py' 2023-05-15T20:16:23,480 adding 'simba_ml/simulation/distributions/vector_distribution.py' 2023-05-15T20:16:23,483 adding 'simba_ml/simulation/generators/__init__.py' 2023-05-15T20:16:23,485 adding 'simba_ml/simulation/generators/generator_interface.py' 2023-05-15T20:16:23,488 adding 'simba_ml/simulation/generators/pertubation_generator.py' 2023-05-15T20:16:23,491 adding 'simba_ml/simulation/generators/steady_state_generator.py' 2023-05-15T20:16:23,493 adding 'simba_ml/simulation/generators/time_points_generator.py' 2023-05-15T20:16:23,496 adding 'simba_ml/simulation/generators/time_series_generator.py' 2023-05-15T20:16:23,498 adding 'simba_ml/simulation/kinetic_parameters/__init__.py' 2023-05-15T20:16:23,501 adding 'simba_ml/simulation/kinetic_parameters/constant_kinetic_parameter.py' 2023-05-15T20:16:23,503 adding 'simba_ml/simulation/kinetic_parameters/dict_based_kinetic_parameter.py' 2023-05-15T20:16:23,505 adding 'simba_ml/simulation/kinetic_parameters/function_based_kinetic_parameter.py' 2023-05-15T20:16:23,507 adding 'simba_ml/simulation/kinetic_parameters/kinetic_parameter.py' 2023-05-15T20:16:23,510 adding 'simba_ml/simulation/noisers/__init__.py' 2023-05-15T20:16:23,512 adding 'simba_ml/simulation/noisers/additive_noiser.py' 2023-05-15T20:16:23,515 adding 'simba_ml/simulation/noisers/adjusting_mean_noiser.py' 2023-05-15T20:16:23,517 adding 'simba_ml/simulation/noisers/column_noiser.py' 2023-05-15T20:16:23,519 adding 'simba_ml/simulation/noisers/elastic_noiser.py' 2023-05-15T20:16:23,521 adding 'simba_ml/simulation/noisers/multi_noiser.py' 2023-05-15T20:16:23,524 adding 'simba_ml/simulation/noisers/multiplicative_noiser.py' 2023-05-15T20:16:23,526 adding 'simba_ml/simulation/noisers/no_noiser.py' 2023-05-15T20:16:23,528 adding 'simba_ml/simulation/noisers/noiser.py' 2023-05-15T20:16:23,530 adding 'simba_ml/simulation/noisers/sequential_noiser.py' 2023-05-15T20:16:23,533 adding 'simba_ml/simulation/sparsifier/__init__.py' 2023-05-15T20:16:23,535 adding 'simba_ml/simulation/sparsifier/constant_suffix_remover.py' 2023-05-15T20:16:23,538 adding 'simba_ml/simulation/sparsifier/interval_sparsifier.py' 2023-05-15T20:16:23,541 adding 'simba_ml/simulation/sparsifier/keep_extreme_values_sparsifier.py' 2023-05-15T20:16:23,543 adding 'simba_ml/simulation/sparsifier/no_sparsifier.py' 2023-05-15T20:16:23,545 adding 'simba_ml/simulation/sparsifier/random_sample_sparsifier.py' 2023-05-15T20:16:23,547 adding 'simba_ml/simulation/sparsifier/sequential_sparsifier.py' 2023-05-15T20:16:23,549 adding 'simba_ml/simulation/sparsifier/sparsifier.py' 2023-05-15T20:16:23,552 adding 'simba_ml/simulation/system_model/__init__.py' 2023-05-15T20:16:23,556 adding 'simba_ml/simulation/system_model/system_model.py' 2023-05-15T20:16:23,558 adding 'simba_ml/simulation/system_model/system_model_interface.py' 2023-05-15T20:16:23,561 adding 'simba_ml-1.0.0rc3.dist-info/DESCRIPTION.rst' 2023-05-15T20:16:23,563 adding 'simba_ml-1.0.0rc3.dist-info/entry_points.txt' 2023-05-15T20:16:23,564 adding 'simba_ml-1.0.0rc3.dist-info/metadata.json' 2023-05-15T20:16:23,566 adding 'simba_ml-1.0.0rc3.dist-info/top_level.txt' 2023-05-15T20:16:23,568 adding 'simba_ml-1.0.0rc3.dist-info/WHEEL' 2023-05-15T20:16:23,569 adding 'simba_ml-1.0.0rc3.dist-info/METADATA' 2023-05-15T20:16:23,574 adding 'simba_ml-1.0.0rc3.dist-info/RECORD' 2023-05-15T20:16:23,820 Building wheel for simba-ml (pyproject.toml): finished with status 'done' 2023-05-15T20:16:23,840 Created wheel for simba-ml: filename=simba_ml-1.0.0rc3-py3-none-any.whl size=112019 sha256=8383af682d8cc161d67628485277fb502cb69482fead1b01d8b1d72d1552216c 2023-05-15T20:16:23,842 Stored in directory: /tmp/pip-ephem-wheel-cache-u3_s82ci/wheels/ba/0c/13/512aebb8ef79514eeef9bae7276b238f82da442b1595381835 2023-05-15T20:16:23,882 Successfully built simba-ml 2023-05-15T20:16:23,898 Removed build tracker: '/tmp/pip-build-tracker-pjvytt8x'