2023-05-16T21:22:35,234 Created temporary directory: /tmp/pip-build-tracker-rrinxgxp 2023-05-16T21:22:35,237 Initialized build tracking at /tmp/pip-build-tracker-rrinxgxp 2023-05-16T21:22:35,237 Created build tracker: /tmp/pip-build-tracker-rrinxgxp 2023-05-16T21:22:35,237 Entered build tracker: /tmp/pip-build-tracker-rrinxgxp 2023-05-16T21:22:35,239 Created temporary directory: /tmp/pip-wheel-3c1clqbu 2023-05-16T21:22:35,247 Created temporary directory: /tmp/pip-ephem-wheel-cache-mm4fdu5k 2023-05-16T21:22:35,298 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-16T21:22:35,307 2 location(s) to search for versions of papyrus-scripts: 2023-05-16T21:22:35,307 * https://pypi.org/simple/papyrus-scripts/ 2023-05-16T21:22:35,307 * https://www.piwheels.org/simple/papyrus-scripts/ 2023-05-16T21:22:35,308 Fetching project page and analyzing links: https://pypi.org/simple/papyrus-scripts/ 2023-05-16T21:22:35,309 Getting page https://pypi.org/simple/papyrus-scripts/ 2023-05-16T21:22:35,312 Found index url https://pypi.org/simple/ 2023-05-16T21:22:35,537 Fetched page https://pypi.org/simple/papyrus-scripts/ as application/vnd.pypi.simple.v1+json 2023-05-16T21:22:35,542 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/b5/19/95564c6182f53424b98a9b226fad2732a775e1b03240f98026d1f4a31c09/papyrus_scripts-1.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2023-05-16T21:22:35,542 Found link https://files.pythonhosted.org/packages/a8/fa/c9965193e37d2e8d7d546604d0995edc8d5117401823c1db7f86b4039889/papyrus_scripts-1.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.0 2023-05-16T21:22:35,543 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/40/cb/13f41607756a77e4cd805fa9b08a8bc3ee15e5db1a8c072793d70b9af909/papyrus_scripts-1.0.1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2023-05-16T21:22:35,544 Found link https://files.pythonhosted.org/packages/9e/74/fbeebe2236ef7fac6e618ef9340b1d0bd356968d8035d4e4c8d3518b2aef/papyrus_scripts-1.0.1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.1 2023-05-16T21:22:35,544 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/37/e6/ce2206c4a5147ad1ce46002653ebea21ec6a11d1e14c8efb8ab1ce937503/papyrus_scripts-1.0.2-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2023-05-16T21:22:35,545 Found link https://files.pythonhosted.org/packages/6b/54/6ae4f489632303221c4e7e55bf7277cd1c8bbc6061531e898dcee8383ada/papyrus_scripts-1.0.2.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.2 2023-05-16T21:22:35,546 Fetching project page and analyzing links: https://www.piwheels.org/simple/papyrus-scripts/ 2023-05-16T21:22:35,546 Getting page https://www.piwheels.org/simple/papyrus-scripts/ 2023-05-16T21:22:35,549 Found index url https://www.piwheels.org/simple/ 2023-05-16T21:22:35,820 Fetched page https://www.piwheels.org/simple/papyrus-scripts/ as text/html 2023-05-16T21:22:35,823 Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.1-py3-none-any.whl#sha256=a9a05d11a4dab2af708d68a7d80f14bde89175c2655db1d624fecddf5e188e07 (from https://www.piwheels.org/simple/papyrus-scripts/) 2023-05-16T21:22:35,824 Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.0-py3-none-any.whl#sha256=0547595805abc574ec34f214d521dcf762c43e1c7da898f1bb95a2c6eda24460 (from https://www.piwheels.org/simple/papyrus-scripts/) 2023-05-16T21:22:35,824 Skipping link: not a file: https://www.piwheels.org/simple/papyrus-scripts/ 2023-05-16T21:22:35,825 Skipping link: not a file: https://pypi.org/simple/papyrus-scripts/ 2023-05-16T21:22:35,858 Given no hashes to check 1 links for project 'papyrus-scripts': discarding no candidates 2023-05-16T21:22:35,888 Collecting papyrus-scripts==1.0.2 2023-05-16T21:22:35,893 Created temporary directory: /tmp/pip-unpack-qz950znh 2023-05-16T21:22:36,067 Downloading papyrus_scripts-1.0.2.tar.gz (69 kB) 2023-05-16T21:22:36,276 Added papyrus-scripts==1.0.2 from https://files.pythonhosted.org/packages/6b/54/6ae4f489632303221c4e7e55bf7277cd1c8bbc6061531e898dcee8383ada/papyrus_scripts-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-rrinxgxp' 2023-05-16T21:22:36,281 Running setup.py (path:/tmp/pip-wheel-3c1clqbu/papyrus-scripts_b692ccd7efc2457e8d511358a51d9463/setup.py) egg_info for package papyrus-scripts 2023-05-16T21:22:36,282 Created temporary directory: /tmp/pip-pip-egg-info-i23sn_8k 2023-05-16T21:22:36,283 Preparing metadata (setup.py): started 2023-05-16T21:22:36,285 Running command python setup.py egg_info 2023-05-16T21:22:38,007 running egg_info 2023-05-16T21:22:38,011 creating /tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info 2023-05-16T21:22:38,068 writing /tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info/PKG-INFO 2023-05-16T21:22:38,075 writing dependency_links to /tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info/dependency_links.txt 2023-05-16T21:22:38,079 writing entry points to /tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info/entry_points.txt 2023-05-16T21:22:38,083 writing requirements to /tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info/requires.txt 2023-05-16T21:22:38,085 writing top-level names to /tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info/top_level.txt 2023-05-16T21:22:38,087 writing manifest file '/tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info/SOURCES.txt' 2023-05-16T21:22:38,274 reading manifest file '/tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info/SOURCES.txt' 2023-05-16T21:22:38,278 adding license file 'LICENSE' 2023-05-16T21:22:38,284 writing manifest file '/tmp/pip-pip-egg-info-i23sn_8k/papyrus_scripts.egg-info/SOURCES.txt' 2023-05-16T21:22:38,286 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg` 2023-05-16T21:22:38,286 !! 2023-05-16T21:22:38,287 ******************************************************************************** 2023-05-16T21:22:38,288 The license_file parameter is deprecated, use license_files instead. 2023-05-16T21:22:38,288 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-05-16T21:22:38,289 or your builds will no longer be supported. 2023-05-16T21:22:38,290 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-05-16T21:22:38,290 ******************************************************************************** 2023-05-16T21:22:38,291 !! 2023-05-16T21:22:38,292 parsed = self.parsers.get(option_name, lambda x: x)(value) 2023-05-16T21:22:38,404 Preparing metadata (setup.py): finished with status 'done' 2023-05-16T21:22:38,419 Source in /tmp/pip-wheel-3c1clqbu/papyrus-scripts_b692ccd7efc2457e8d511358a51d9463 has version 1.0.2, which satisfies requirement papyrus-scripts==1.0.2 from https://files.pythonhosted.org/packages/6b/54/6ae4f489632303221c4e7e55bf7277cd1c8bbc6061531e898dcee8383ada/papyrus_scripts-1.0.2.tar.gz 2023-05-16T21:22:38,421 Removed papyrus-scripts==1.0.2 from https://files.pythonhosted.org/packages/6b/54/6ae4f489632303221c4e7e55bf7277cd1c8bbc6061531e898dcee8383ada/papyrus_scripts-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-rrinxgxp' 2023-05-16T21:22:38,433 Created temporary directory: /tmp/pip-unpack-6iirdxfb 2023-05-16T21:22:38,435 Building wheels for collected packages: papyrus-scripts 2023-05-16T21:22:38,443 Created temporary directory: /tmp/pip-wheel-h5xxnl5f 2023-05-16T21:22:38,444 Building wheel for papyrus-scripts (setup.py): started 2023-05-16T21:22:38,446 Destination directory: /tmp/pip-wheel-h5xxnl5f 2023-05-16T21:22:38,447 Running command python setup.py bdist_wheel 2023-05-16T21:22:39,712 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg` 2023-05-16T21:22:39,713 !! 2023-05-16T21:22:39,714 ******************************************************************************** 2023-05-16T21:22:39,714 The license_file parameter is deprecated, use license_files instead. 2023-05-16T21:22:39,715 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-05-16T21:22:39,715 or your builds will no longer be supported. 2023-05-16T21:22:39,716 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-05-16T21:22:39,716 ******************************************************************************** 2023-05-16T21:22:39,717 !! 2023-05-16T21:22:39,717 parsed = self.parsers.get(option_name, lambda x: x)(value) 2023-05-16T21:22:40,577 running bdist_wheel 2023-05-16T21:22:40,751 running build 2023-05-16T21:22:40,752 running build_py 2023-05-16T21:22:40,816 creating build 2023-05-16T21:22:40,817 creating build/lib 2023-05-16T21:22:40,819 creating build/lib/papyrus_scripts 2023-05-16T21:22:40,821 copying src/papyrus_scripts/modelling.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,830 copying src/papyrus_scripts/preprocess.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,836 copying src/papyrus_scripts/cli.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,841 copying src/papyrus_scripts/neuralnet.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,846 copying src/papyrus_scripts/matchRCSB.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,850 copying src/papyrus_scripts/__main__.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,854 copying src/papyrus_scripts/subsim_search.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,860 copying src/papyrus_scripts/reader.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,866 copying src/papyrus_scripts/download.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,871 copying src/papyrus_scripts/__init__.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,874 copying src/papyrus_scripts/fingerprint.py -> build/lib/papyrus_scripts 2023-05-16T21:22:40,880 creating build/lib/papyrus_scripts/utils 2023-05-16T21:22:40,882 copying src/papyrus_scripts/utils/mol_reader.py -> build/lib/papyrus_scripts/utils 2023-05-16T21:22:40,887 copying src/papyrus_scripts/utils/UniprotMatch.py -> build/lib/papyrus_scripts/utils 2023-05-16T21:22:40,892 copying src/papyrus_scripts/utils/__init__.py -> build/lib/papyrus_scripts/utils 2023-05-16T21:22:40,895 copying src/papyrus_scripts/utils/IO.py -> build/lib/papyrus_scripts/utils 2023-05-16T21:22:40,899 running egg_info 2023-05-16T21:22:41,040 writing src/papyrus_scripts.egg-info/PKG-INFO 2023-05-16T21:22:41,045 writing dependency_links to src/papyrus_scripts.egg-info/dependency_links.txt 2023-05-16T21:22:41,049 writing entry points to src/papyrus_scripts.egg-info/entry_points.txt 2023-05-16T21:22:41,053 writing requirements to src/papyrus_scripts.egg-info/requires.txt 2023-05-16T21:22:41,055 writing top-level names to src/papyrus_scripts.egg-info/top_level.txt 2023-05-16T21:22:41,123 reading manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt' 2023-05-16T21:22:41,128 adding license file 'LICENSE' 2023-05-16T21:22:41,135 writing manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt' 2023-05-16T21:22:41,142 copying src/papyrus_scripts/utils/links.json -> build/lib/papyrus_scripts/utils 2023-05-16T21:22:41,216 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-16T21:22:41,216 !! 2023-05-16T21:22:41,217 ******************************************************************************** 2023-05-16T21:22:41,217 Please avoid running ``setup.py`` directly. 2023-05-16T21:22:41,218 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-16T21:22:41,218 other standards-based tools. 2023-05-16T21:22:41,219 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-16T21:22:41,219 ******************************************************************************** 2023-05-16T21:22:41,220 !! 2023-05-16T21:22:41,220 self.initialize_options() 2023-05-16T21:22:41,277 installing to build/bdist.linux-armv7l/wheel 2023-05-16T21:22:41,277 running install 2023-05-16T21:22:41,336 running install_lib 2023-05-16T21:22:41,398 creating build/bdist.linux-armv7l 2023-05-16T21:22:41,399 creating build/bdist.linux-armv7l/wheel 2023-05-16T21:22:41,402 creating build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,404 copying build/lib/papyrus_scripts/modelling.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,412 copying build/lib/papyrus_scripts/preprocess.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,417 copying build/lib/papyrus_scripts/cli.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,423 copying build/lib/papyrus_scripts/neuralnet.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,428 copying build/lib/papyrus_scripts/matchRCSB.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,433 creating build/bdist.linux-armv7l/wheel/papyrus_scripts/utils 2023-05-16T21:22:41,435 copying build/lib/papyrus_scripts/utils/mol_reader.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts/utils 2023-05-16T21:22:41,440 copying build/lib/papyrus_scripts/utils/UniprotMatch.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts/utils 2023-05-16T21:22:41,444 copying build/lib/papyrus_scripts/utils/links.json -> build/bdist.linux-armv7l/wheel/papyrus_scripts/utils 2023-05-16T21:22:41,449 copying build/lib/papyrus_scripts/utils/__init__.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts/utils 2023-05-16T21:22:41,452 copying build/lib/papyrus_scripts/utils/IO.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts/utils 2023-05-16T21:22:41,457 copying build/lib/papyrus_scripts/__main__.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,461 copying build/lib/papyrus_scripts/subsim_search.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,467 copying build/lib/papyrus_scripts/reader.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,473 copying build/lib/papyrus_scripts/download.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,477 copying build/lib/papyrus_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,481 copying build/lib/papyrus_scripts/fingerprint.py -> build/bdist.linux-armv7l/wheel/papyrus_scripts 2023-05-16T21:22:41,485 running install_egg_info 2023-05-16T21:22:41,554 Copying src/papyrus_scripts.egg-info to build/bdist.linux-armv7l/wheel/papyrus_scripts-1.0.2-py3.7.egg-info 2023-05-16T21:22:41,577 running install_scripts 2023-05-16T21:22:41,636 creating build/bdist.linux-armv7l/wheel/papyrus_scripts-1.0.2.dist-info/WHEEL 2023-05-16T21:22:41,640 creating '/tmp/pip-wheel-h5xxnl5f/papyrus_scripts-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-16T21:22:41,646 adding 'papyrus_scripts/__init__.py' 2023-05-16T21:22:41,648 adding 'papyrus_scripts/__main__.py' 2023-05-16T21:22:41,655 adding 'papyrus_scripts/cli.py' 2023-05-16T21:22:41,660 adding 'papyrus_scripts/download.py' 2023-05-16T21:22:41,664 adding 'papyrus_scripts/fingerprint.py' 2023-05-16T21:22:41,668 adding 'papyrus_scripts/matchRCSB.py' 2023-05-16T21:22:41,681 adding 'papyrus_scripts/modelling.py' 2023-05-16T21:22:41,688 adding 'papyrus_scripts/neuralnet.py' 2023-05-16T21:22:41,697 adding 'papyrus_scripts/preprocess.py' 2023-05-16T21:22:41,703 adding 'papyrus_scripts/reader.py' 2023-05-16T21:22:41,715 adding 'papyrus_scripts/subsim_search.py' 2023-05-16T21:22:41,722 adding 'papyrus_scripts/utils/IO.py' 2023-05-16T21:22:41,727 adding 'papyrus_scripts/utils/UniprotMatch.py' 2023-05-16T21:22:41,730 adding 'papyrus_scripts/utils/__init__.py' 2023-05-16T21:22:41,735 adding 'papyrus_scripts/utils/links.json' 2023-05-16T21:22:41,740 adding 'papyrus_scripts/utils/mol_reader.py' 2023-05-16T21:22:41,745 adding 'papyrus_scripts-1.0.2.dist-info/LICENSE' 2023-05-16T21:22:41,749 adding 'papyrus_scripts-1.0.2.dist-info/METADATA' 2023-05-16T21:22:41,751 adding 'papyrus_scripts-1.0.2.dist-info/WHEEL' 2023-05-16T21:22:41,753 adding 'papyrus_scripts-1.0.2.dist-info/entry_points.txt' 2023-05-16T21:22:41,755 adding 'papyrus_scripts-1.0.2.dist-info/top_level.txt' 2023-05-16T21:22:41,756 adding 'papyrus_scripts-1.0.2.dist-info/RECORD' 2023-05-16T21:22:41,761 removing build/bdist.linux-armv7l/wheel 2023-05-16T21:22:41,925 Building wheel for papyrus-scripts (setup.py): finished with status 'done' 2023-05-16T21:22:41,934 Created wheel for papyrus-scripts: filename=papyrus_scripts-1.0.2-py3-none-any.whl size=72010 sha256=0c5c255057debeeb39bc7754d5580f5017739a5511dfc5c8a0a4cea4381a216b 2023-05-16T21:22:41,936 Stored in directory: /tmp/pip-ephem-wheel-cache-mm4fdu5k/wheels/2f/cf/ff/57eb7f48c3e6da0800b1b9df1f3887b15392b1b6e404f8a84a 2023-05-16T21:22:41,966 Successfully built papyrus-scripts 2023-05-16T21:22:41,978 Removed build tracker: '/tmp/pip-build-tracker-rrinxgxp'