2023-05-16T21:51:41,798 Created temporary directory: /tmp/pip-build-tracker-dht0z0e9
2023-05-16T21:51:41,799 Initialized build tracking at /tmp/pip-build-tracker-dht0z0e9
2023-05-16T21:51:41,800 Created build tracker: /tmp/pip-build-tracker-dht0z0e9
2023-05-16T21:51:41,800 Entered build tracker: /tmp/pip-build-tracker-dht0z0e9
2023-05-16T21:51:41,800 Created temporary directory: /tmp/pip-wheel-w2lwr2gu
2023-05-16T21:51:41,803 Created temporary directory: /tmp/pip-ephem-wheel-cache-l_u9hu8j
2023-05-16T21:51:41,825 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-16T21:51:41,829 2 location(s) to search for versions of moleculekit:
2023-05-16T21:51:41,829 * https://pypi.org/simple/moleculekit/
2023-05-16T21:51:41,829 * https://www.piwheels.org/simple/moleculekit/
2023-05-16T21:51:41,829 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-05-16T21:51:41,829 Getting page https://pypi.org/simple/moleculekit/
2023-05-16T21:51:41,831 Found index url https://pypi.org/simple/
2023-05-16T21:51:41,882 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-05-16T21:51:41,917   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,917   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-05-16T21:51:41,917   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,918   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-05-16T21:51:41,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,918   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-05-16T21:51:41,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,919   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-05-16T21:51:41,919   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,919   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-05-16T21:51:41,919   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,920   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-05-16T21:51:41,920   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,920   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-05-16T21:51:41,920   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,921   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-05-16T21:51:41,921   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,921   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-05-16T21:51:41,921   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,921   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-05-16T21:51:41,922   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,922   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-05-16T21:51:41,922   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,922   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-05-16T21:51:41,923   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,923   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-05-16T21:51:41,923   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,923   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-05-16T21:51:41,924   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,924   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-05-16T21:51:41,924   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,924   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-05-16T21:51:41,925   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,925   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-05-16T21:51:41,925   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,925   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-05-16T21:51:41,925   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,926   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-05-16T21:51:41,926   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,926   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-05-16T21:51:41,926   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,927   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-05-16T21:51:41,927   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,927   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-05-16T21:51:41,927   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,928   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-05-16T21:51:41,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,928   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-05-16T21:51:41,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,928   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-05-16T21:51:41,929   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,929   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-05-16T21:51:41,929   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,929   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-05-16T21:51:41,930   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,930   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-05-16T21:51:41,930   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,930   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-05-16T21:51:41,930   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,931   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-05-16T21:51:41,931   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,931   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-05-16T21:51:41,931   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,932   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-05-16T21:51:41,932   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T21:51:41,932   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2023-05-16T21:51:41,932   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-05-16T21:51:41,964   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
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2023-05-16T21:51:41,969   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
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2023-05-16T21:51:41,970   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2023-05-16T21:51:41,971   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2023-05-16T21:51:41,971   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2023-05-16T21:51:41,972   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2023-05-16T21:51:41,972   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2023-05-16T21:51:41,973 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-05-16T21:51:41,973 Getting page https://www.piwheels.org/simple/moleculekit/
2023-05-16T21:51:41,974 Found index url https://www.piwheels.org/simple/
2023-05-16T21:51:42,135 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-05-16T21:51:42,194   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,195   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,195   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,195   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,195   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,195   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,196   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,196   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,196   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,196   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,196   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,197   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,197   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,197   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,197   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,197   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,197   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,198   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,198   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,198   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,198   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,198   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,199   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,199   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,199   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,199   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,199   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,199   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,200   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,200   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,200   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,200   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,200   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,201   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,201   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,201   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,201   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,201   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,201   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,202   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,202   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,202   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,202   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,202   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,203   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,203   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,203   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,203   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,203   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,204   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,204   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,204   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,204   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,204   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,204   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,205   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,205   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,205   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,205   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,205   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,206   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
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2023-05-16T21:51:42,217   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,217   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,217   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T21:51:42,219 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-05-16T21:51:42,219 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-05-16T21:51:42,255 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-05-16T21:51:42,271 Collecting moleculekit==1.6.6
2023-05-16T21:51:42,273   Created temporary directory: /tmp/pip-unpack-spxh3w4n
2023-05-16T21:51:42,321   Downloading moleculekit-1.6.6.tar.gz (5.8 MB)
2023-05-16T21:51:44,143   Added moleculekit==1.6.6 from https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz to build tracker '/tmp/pip-build-tracker-dht0z0e9'
2023-05-16T21:51:44,151   Created temporary directory: /tmp/pip-build-env-g3vqv7sr
2023-05-16T21:51:44,161   Installing build dependencies: started
2023-05-16T21:51:44,162   Running command pip subprocess to install build dependencies
2023-05-16T21:51:45,314   Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-05-16T21:51:45,666   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-16T21:51:47,426   Collecting setuptools
2023-05-16T21:51:47,507     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.7.2-py3-none-any.whl (1.1 MB)
2023-05-16T21:51:48,736   Collecting numpy>=1.18.5
2023-05-16T21:51:49,692     Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.3-cp39-cp39-linux_armv7l.whl (12.3 MB)
2023-05-16T21:51:51,384   Collecting Cython>=0.29.21
2023-05-16T21:51:51,791     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.34-cp39-cp39-linux_armv7l.whl (5.0 MB)
2023-05-16T21:51:51,998   Collecting toml
2023-05-16T21:51:52,022     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-05-16T21:51:52,122   Collecting versioneer[toml]==0.28
2023-05-16T21:51:52,135     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-05-16T21:51:52,154        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 4.0 MB/s eta 0:00:00
2023-05-16T21:51:52,280   Collecting tomli (from versioneer[toml]==0.28)
2023-05-16T21:51:52,295     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-05-16T21:51:54,007   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-05-16T21:51:54,045     Creating /tmp/pip-build-env-g3vqv7sr/overlay/bin
2023-05-16T21:51:54,048     changing mode of /tmp/pip-build-env-g3vqv7sr/overlay/bin/versioneer to 755
2023-05-16T21:52:04,551     changing mode of /tmp/pip-build-env-g3vqv7sr/overlay/bin/f2py to 755
2023-05-16T21:52:04,553     changing mode of /tmp/pip-build-env-g3vqv7sr/overlay/bin/f2py3 to 755
2023-05-16T21:52:04,555     changing mode of /tmp/pip-build-env-g3vqv7sr/overlay/bin/f2py3.9 to 755
2023-05-16T21:52:07,311     changing mode of /tmp/pip-build-env-g3vqv7sr/overlay/bin/cygdb to 755
2023-05-16T21:52:07,314     changing mode of /tmp/pip-build-env-g3vqv7sr/overlay/bin/cython to 755
2023-05-16T21:52:07,316     changing mode of /tmp/pip-build-env-g3vqv7sr/overlay/bin/cythonize to 755
2023-05-16T21:52:07,342   Successfully installed Cython-0.29.34 numpy-1.24.3 setuptools-67.7.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-05-16T21:52:07,730   Installing build dependencies: finished with status 'done'
2023-05-16T21:52:07,735   Getting requirements to build wheel: started
2023-05-16T21:52:07,736   Running command Getting requirements to build wheel
2023-05-16T21:52:51,107   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,108   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,108   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,108   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,108   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,108   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,108   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,108   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,108   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,109   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-05-16T21:52:51,109   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T21:52:51,109   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-05-16T21:52:51,109   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-05-16T21:52:51,109   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-05-16T21:52:51,109   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-05-16T21:52:51,109   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-05-16T21:52:51,109   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-05-16T21:52:51,109   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-05-16T21:52:51,110   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-05-16T21:52:51,110   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-05-16T21:52:51,110   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-05-16T21:52:51,110   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-05-16T21:52:51,159   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-05-16T21:52:51,159     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-05-16T21:52:51,462   running egg_info
2023-05-16T21:52:51,473   writing moleculekit.egg-info/PKG-INFO
2023-05-16T21:52:51,475   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-05-16T21:52:51,478   writing requirements to moleculekit.egg-info/requires.txt
2023-05-16T21:52:51,479   writing top-level names to moleculekit.egg-info/top_level.txt
2023-05-16T21:52:51,507   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-05-16T21:52:51,539   reading manifest template 'MANIFEST.in'
2023-05-16T21:52:52,242   no previously-included directories found matching 'moleculekit/test-data'
2023-05-16T21:52:52,244   no previously-included directories found matching 'moleculekit/tests'
2023-05-16T21:52:52,245   no previously-included directories found matching 'package'
2023-05-16T21:52:52,246   adding license file 'LICENSE'
2023-05-16T21:52:52,263   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-05-16T21:52:53,152   Getting requirements to build wheel: finished with status 'done'
2023-05-16T21:52:53,168   Installing backend dependencies: started
2023-05-16T21:52:53,169   Running command pip subprocess to install backend dependencies
2023-05-16T21:52:54,419   Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-05-16T21:52:54,817   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-16T21:52:55,257   Collecting wheel
2023-05-16T21:52:55,275     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-05-16T21:52:56,573   Installing collected packages: wheel
2023-05-16T21:52:56,794     Creating /tmp/pip-build-env-g3vqv7sr/normal/bin
2023-05-16T21:52:56,797     changing mode of /tmp/pip-build-env-g3vqv7sr/normal/bin/wheel to 755
2023-05-16T21:52:56,810   Successfully installed wheel-0.40.0
2023-05-16T21:52:57,033   Installing backend dependencies: finished with status 'done'
2023-05-16T21:52:57,035   Created temporary directory: /tmp/pip-modern-metadata-so4qnn_x
2023-05-16T21:52:57,038   Preparing metadata (pyproject.toml): started
2023-05-16T21:52:57,039   Running command Preparing metadata (pyproject.toml)
2023-05-16T21:52:58,672   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-05-16T21:52:58,673     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-05-16T21:52:58,939   running dist_info
2023-05-16T21:52:58,941   creating /tmp/pip-modern-metadata-so4qnn_x/moleculekit.egg-info
2023-05-16T21:52:58,948   writing /tmp/pip-modern-metadata-so4qnn_x/moleculekit.egg-info/PKG-INFO
2023-05-16T21:52:58,951   writing dependency_links to /tmp/pip-modern-metadata-so4qnn_x/moleculekit.egg-info/dependency_links.txt
2023-05-16T21:52:58,953   writing requirements to /tmp/pip-modern-metadata-so4qnn_x/moleculekit.egg-info/requires.txt
2023-05-16T21:52:58,954   writing top-level names to /tmp/pip-modern-metadata-so4qnn_x/moleculekit.egg-info/top_level.txt
2023-05-16T21:52:58,956   writing manifest file '/tmp/pip-modern-metadata-so4qnn_x/moleculekit.egg-info/SOURCES.txt'
2023-05-16T21:52:58,988   reading manifest file '/tmp/pip-modern-metadata-so4qnn_x/moleculekit.egg-info/SOURCES.txt'
2023-05-16T21:52:58,990   reading manifest template 'MANIFEST.in'
2023-05-16T21:52:59,220   no previously-included directories found matching 'moleculekit/test-data'
2023-05-16T21:52:59,221   no previously-included directories found matching 'moleculekit/tests'
2023-05-16T21:52:59,221   no previously-included directories found matching 'package'
2023-05-16T21:52:59,222   adding license file 'LICENSE'
2023-05-16T21:52:59,234   writing manifest file '/tmp/pip-modern-metadata-so4qnn_x/moleculekit.egg-info/SOURCES.txt'
2023-05-16T21:52:59,242   creating '/tmp/pip-modern-metadata-so4qnn_x/moleculekit-1.6.6.dist-info'
2023-05-16T21:52:59,458   Preparing metadata (pyproject.toml): finished with status 'done'
2023-05-16T21:52:59,464   Source in /tmp/pip-wheel-w2lwr2gu/moleculekit_aec897eec9cd4b4d8fb2630a78933b31 has version 1.6.6, which satisfies requirement moleculekit==1.6.6 from https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz
2023-05-16T21:52:59,465   Removed moleculekit==1.6.6 from https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz from build tracker '/tmp/pip-build-tracker-dht0z0e9'
2023-05-16T21:52:59,471 Created temporary directory: /tmp/pip-unpack-3ofi4ef0
2023-05-16T21:52:59,472 Building wheels for collected packages: moleculekit
2023-05-16T21:52:59,475   Created temporary directory: /tmp/pip-wheel-vsgwerjt
2023-05-16T21:52:59,476   Destination directory: /tmp/pip-wheel-vsgwerjt
2023-05-16T21:52:59,478   Building wheel for moleculekit (pyproject.toml): started
2023-05-16T21:52:59,479   Running command Building wheel for moleculekit (pyproject.toml)
2023-05-16T21:53:00,986   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-05-16T21:53:00,987     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-05-16T21:53:01,234   running bdist_wheel
2023-05-16T21:53:01,250   running build
2023-05-16T21:53:01,250   running build_py
2023-05-16T21:53:01,258   creating build
2023-05-16T21:53:01,258   creating build/lib.linux-armv7l-cpython-39
2023-05-16T21:53:01,259   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,260   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,262   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,264   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,266   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,268   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,270   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,272   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,274   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,278   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,285   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,286   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,291   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,292   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,294   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,296   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,298   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,300   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,303   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,304   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,306   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,308   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T21:53:01,309   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T21:53:01,311   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T21:53:01,313   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T21:53:01,316   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T21:53:01,318   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T21:53:01,320   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T21:53:01,323   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-05-16T21:53:01,324   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-05-16T21:53:01,326   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-05-16T21:53:01,330   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,331   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,334   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,335   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,338   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,340   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,342   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,345   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,346   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,349   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,351   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,353   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,356   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,359   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T21:53:01,363   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T21:53:01,364   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T21:53:01,366   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T21:53:01,368   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T21:53:01,370   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T21:53:01,373   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-05-16T21:53:01,373   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-05-16T21:53:01,376   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-05-16T21:53:01,377   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-05-16T21:53:01,378   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-05-16T21:53:01,381   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-05-16T21:53:01,387   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,388   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,390   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,392   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,395   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,397   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,399   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,401   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,403   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,406   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,409   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,411   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,413   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,416   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,419   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,421   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T21:53:01,423   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T21:53:01,424   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T21:53:01,426   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T21:53:01,428   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T21:53:01,430   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T21:53:01,432   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-05-16T21:53:01,433   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-05-16T21:53:01,435   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-05-16T21:53:01,438   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T21:53:01,438   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T21:53:01,440   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T21:53:01,442   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T21:53:01,445   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T21:53:01,448   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-05-16T21:53:01,449   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-05-16T21:53:01,451   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-05-16T21:53:01,453   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T21:53:01,454   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T21:53:01,456   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T21:53:01,458   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T21:53:01,460   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T21:53:01,462   running egg_info
2023-05-16T21:53:01,469   writing moleculekit.egg-info/PKG-INFO
2023-05-16T21:53:01,471   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-05-16T21:53:01,473   writing requirements to moleculekit.egg-info/requires.txt
2023-05-16T21:53:01,474   writing top-level names to moleculekit.egg-info/top_level.txt
2023-05-16T21:53:01,492   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-05-16T21:53:01,501   reading manifest template 'MANIFEST.in'
2023-05-16T21:53:01,720   no previously-included directories found matching 'moleculekit/test-data'
2023-05-16T21:53:01,721   no previously-included directories found matching 'moleculekit/tests'
2023-05-16T21:53:01,722   no previously-included directories found matching 'package'
2023-05-16T21:53:01,723   adding license file 'LICENSE'
2023-05-16T21:53:01,739   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-05-16T21:53:01,749   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-05-16T21:53:01,749   !!

2023-05-16T21:53:01,750           ********************************************************************************
2023-05-16T21:53:01,750           ############################
2023-05-16T21:53:01,750           # Package would be ignored #
2023-05-16T21:53:01,750           ############################
2023-05-16T21:53:01,750           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-05-16T21:53:01,750           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,751           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,751           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-05-16T21:53:01,751           to the `packages` configuration field.

2023-05-16T21:53:01,751           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,751           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,751           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,751           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,752           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,752           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-05-16T21:53:01,752           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-05-16T21:53:01,752           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,752           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,752           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,753           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,753           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,753           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,753                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,753                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,753                 directory, all directories are treated like packages.
2023-05-16T21:53:01,754           ********************************************************************************

2023-05-16T21:53:01,754   !!
2023-05-16T21:53:01,754     check.warn(importable)
2023-05-16T21:53:01,754   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-05-16T21:53:01,754   !!

2023-05-16T21:53:01,755           ********************************************************************************
2023-05-16T21:53:01,755           ############################
2023-05-16T21:53:01,755           # Package would be ignored #
2023-05-16T21:53:01,755           ############################
2023-05-16T21:53:01,755           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-05-16T21:53:01,755           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,755           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,756           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-05-16T21:53:01,756           to the `packages` configuration field.

2023-05-16T21:53:01,756           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,756           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,756           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,756           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,757           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,757           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-05-16T21:53:01,757           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-05-16T21:53:01,757           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,757           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,757           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,757           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,758           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,758           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,758                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,758                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,758                 directory, all directories are treated like packages.
2023-05-16T21:53:01,758           ********************************************************************************

2023-05-16T21:53:01,759   !!
2023-05-16T21:53:01,759     check.warn(importable)
2023-05-16T21:53:01,759   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-05-16T21:53:01,759   !!

2023-05-16T21:53:01,759           ********************************************************************************
2023-05-16T21:53:01,759           ############################
2023-05-16T21:53:01,759           # Package would be ignored #
2023-05-16T21:53:01,760           ############################
2023-05-16T21:53:01,760           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-05-16T21:53:01,760           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,760           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,760           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-05-16T21:53:01,760           to the `packages` configuration field.

2023-05-16T21:53:01,760           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,760           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,761           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,761           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,761           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,761           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-05-16T21:53:01,761           already explicitly excluding 'moleculekit.distance_utils' via
2023-05-16T21:53:01,761           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,762           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,762           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,762           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,762           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,762           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,763                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,763                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,763                 directory, all directories are treated like packages.
2023-05-16T21:53:01,763           ********************************************************************************

2023-05-16T21:53:01,763   !!
2023-05-16T21:53:01,763     check.warn(importable)
2023-05-16T21:53:01,763   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-05-16T21:53:01,763   !!

2023-05-16T21:53:01,764           ********************************************************************************
2023-05-16T21:53:01,764           ############################
2023-05-16T21:53:01,764           # Package would be ignored #
2023-05-16T21:53:01,764           ############################
2023-05-16T21:53:01,764           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-05-16T21:53:01,764           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,764           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,765           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-05-16T21:53:01,765           to the `packages` configuration field.

2023-05-16T21:53:01,765           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,765           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,765           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,765           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,766           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,766           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-05-16T21:53:01,766           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-05-16T21:53:01,766           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,766           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,766           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,766           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,767           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,767           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,767                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,767                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,767                 directory, all directories are treated like packages.
2023-05-16T21:53:01,767           ********************************************************************************

2023-05-16T21:53:01,768   !!
2023-05-16T21:53:01,768     check.warn(importable)
2023-05-16T21:53:01,768   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-05-16T21:53:01,768   !!

2023-05-16T21:53:01,768           ********************************************************************************
2023-05-16T21:53:01,768           ############################
2023-05-16T21:53:01,768           # Package would be ignored #
2023-05-16T21:53:01,769           ############################
2023-05-16T21:53:01,769           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-05-16T21:53:01,769           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,769           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,769           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-05-16T21:53:01,769           to the `packages` configuration field.

2023-05-16T21:53:01,769           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,770           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,770           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,770           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,770           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,770           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-05-16T21:53:01,770           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-05-16T21:53:01,771           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,771           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,771           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,771           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,771           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,772           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,772                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,772                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,772                 directory, all directories are treated like packages.
2023-05-16T21:53:01,772           ********************************************************************************

2023-05-16T21:53:01,772   !!
2023-05-16T21:53:01,772     check.warn(importable)
2023-05-16T21:53:01,773   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-05-16T21:53:01,773   !!

2023-05-16T21:53:01,773           ********************************************************************************
2023-05-16T21:53:01,773           ############################
2023-05-16T21:53:01,773           # Package would be ignored #
2023-05-16T21:53:01,773           ############################
2023-05-16T21:53:01,773           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-05-16T21:53:01,773           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,774           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,774           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-05-16T21:53:01,774           to the `packages` configuration field.

2023-05-16T21:53:01,774           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,774           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,774           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,775           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,775           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,775           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-05-16T21:53:01,775           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-05-16T21:53:01,775           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,775           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,776           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,776           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,776           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,776           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,776                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,776                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,777                 directory, all directories are treated like packages.
2023-05-16T21:53:01,777           ********************************************************************************

2023-05-16T21:53:01,777   !!
2023-05-16T21:53:01,777     check.warn(importable)
2023-05-16T21:53:01,777   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-05-16T21:53:01,777   !!

2023-05-16T21:53:01,777           ********************************************************************************
2023-05-16T21:53:01,778           ############################
2023-05-16T21:53:01,778           # Package would be ignored #
2023-05-16T21:53:01,778           ############################
2023-05-16T21:53:01,778           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-05-16T21:53:01,778           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,778           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,778           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-05-16T21:53:01,778           to the `packages` configuration field.

2023-05-16T21:53:01,779           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,779           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,779           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,779           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,779           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,780           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-05-16T21:53:01,780           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-05-16T21:53:01,780           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,780           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,780           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,780           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,780           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,781           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,781                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,781                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,781                 directory, all directories are treated like packages.
2023-05-16T21:53:01,781           ********************************************************************************

2023-05-16T21:53:01,781   !!
2023-05-16T21:53:01,781     check.warn(importable)
2023-05-16T21:53:01,782   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-05-16T21:53:01,782   !!

2023-05-16T21:53:01,782           ********************************************************************************
2023-05-16T21:53:01,782           ############################
2023-05-16T21:53:01,782           # Package would be ignored #
2023-05-16T21:53:01,782           ############################
2023-05-16T21:53:01,782           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-05-16T21:53:01,782           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,783           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,783           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-05-16T21:53:01,783           to the `packages` configuration field.

2023-05-16T21:53:01,783           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,783           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,783           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,784           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,784           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,784           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-05-16T21:53:01,784           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-05-16T21:53:01,784           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,784           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,784           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,785           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,785           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,785           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,785                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,785                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,786                 directory, all directories are treated like packages.
2023-05-16T21:53:01,786           ********************************************************************************

2023-05-16T21:53:01,786   !!
2023-05-16T21:53:01,786     check.warn(importable)
2023-05-16T21:53:01,786   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-05-16T21:53:01,786   !!

2023-05-16T21:53:01,786           ********************************************************************************
2023-05-16T21:53:01,787           ############################
2023-05-16T21:53:01,787           # Package would be ignored #
2023-05-16T21:53:01,787           ############################
2023-05-16T21:53:01,787           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-05-16T21:53:01,787           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,787           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,787           package, please make sure that 'moleculekit.share' is explicitly added
2023-05-16T21:53:01,787           to the `packages` configuration field.

2023-05-16T21:53:01,788           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,788           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,788           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,788           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,788           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,788           If you don't want 'moleculekit.share' to be distributed and are
2023-05-16T21:53:01,789           already explicitly excluding 'moleculekit.share' via
2023-05-16T21:53:01,789           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,789           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,789           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,789           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,790           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,790           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,790                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,790                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,790                 directory, all directories are treated like packages.
2023-05-16T21:53:01,790           ********************************************************************************

2023-05-16T21:53:01,791   !!
2023-05-16T21:53:01,791     check.warn(importable)
2023-05-16T21:53:01,791   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-05-16T21:53:01,791   !!

2023-05-16T21:53:01,791           ********************************************************************************
2023-05-16T21:53:01,792           ############################
2023-05-16T21:53:01,792           # Package would be ignored #
2023-05-16T21:53:01,792           ############################
2023-05-16T21:53:01,792           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-05-16T21:53:01,792           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,792           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,792           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-05-16T21:53:01,793           to the `packages` configuration field.

2023-05-16T21:53:01,793           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,793           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,793           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,793           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,794           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,794           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-05-16T21:53:01,794           already explicitly excluding 'moleculekit.share.atomselect' via
2023-05-16T21:53:01,794           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,794           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,794           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,795           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,795           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,795           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,796                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,796                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,796                 directory, all directories are treated like packages.
2023-05-16T21:53:01,796           ********************************************************************************

2023-05-16T21:53:01,796   !!
2023-05-16T21:53:01,796     check.warn(importable)
2023-05-16T21:53:01,796   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-05-16T21:53:01,796   !!

2023-05-16T21:53:01,797           ********************************************************************************
2023-05-16T21:53:01,797           ############################
2023-05-16T21:53:01,797           # Package would be ignored #
2023-05-16T21:53:01,797           ############################
2023-05-16T21:53:01,797           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-05-16T21:53:01,797           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,797           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,798           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-05-16T21:53:01,798           to the `packages` configuration field.

2023-05-16T21:53:01,798           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,798           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,798           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,798           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,799           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,799           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-05-16T21:53:01,799           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-05-16T21:53:01,799           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,799           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,799           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,799           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,800           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,800           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,800                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,800                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,800                 directory, all directories are treated like packages.
2023-05-16T21:53:01,801           ********************************************************************************

2023-05-16T21:53:01,801   !!
2023-05-16T21:53:01,801     check.warn(importable)
2023-05-16T21:53:01,802   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-05-16T21:53:01,802   !!

2023-05-16T21:53:01,803           ********************************************************************************
2023-05-16T21:53:01,804           ############################
2023-05-16T21:53:01,807           # Package would be ignored #
2023-05-16T21:53:01,807           ############################
2023-05-16T21:53:01,807           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-05-16T21:53:01,808           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,808           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,808           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-05-16T21:53:01,809           to the `packages` configuration field.

2023-05-16T21:53:01,809           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,809           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,809           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,810           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,810           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,810           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-05-16T21:53:01,811           already explicitly excluding 'moleculekit.tmalign' via
2023-05-16T21:53:01,811           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,811           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,811           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,811           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,812           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,812           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,812                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,812                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,812                 directory, all directories are treated like packages.
2023-05-16T21:53:01,812           ********************************************************************************

2023-05-16T21:53:01,813   !!
2023-05-16T21:53:01,813     check.warn(importable)
2023-05-16T21:53:01,813   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-05-16T21:53:01,813   !!

2023-05-16T21:53:01,813           ********************************************************************************
2023-05-16T21:53:01,813           ############################
2023-05-16T21:53:01,813           # Package would be ignored #
2023-05-16T21:53:01,814           ############################
2023-05-16T21:53:01,814           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-05-16T21:53:01,814           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,814           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,814           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-05-16T21:53:01,814           to the `packages` configuration field.

2023-05-16T21:53:01,814           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,815           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,815           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,815           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,815           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,815           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-05-16T21:53:01,816           already explicitly excluding 'moleculekit.tmalign.include' via
2023-05-16T21:53:01,816           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,816           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,816           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,816           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,816           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,817           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,817                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,817                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,817                 directory, all directories are treated like packages.
2023-05-16T21:53:01,817           ********************************************************************************

2023-05-16T21:53:01,817   !!
2023-05-16T21:53:01,818     check.warn(importable)
2023-05-16T21:53:01,818   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-05-16T21:53:01,818   !!

2023-05-16T21:53:01,818           ********************************************************************************
2023-05-16T21:53:01,818           ############################
2023-05-16T21:53:01,818           # Package would be ignored #
2023-05-16T21:53:01,818           ############################
2023-05-16T21:53:01,819           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-05-16T21:53:01,819           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,819           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,819           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-05-16T21:53:01,819           to the `packages` configuration field.

2023-05-16T21:53:01,820           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,820           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,820           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,820           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,820           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,821           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-05-16T21:53:01,821           already explicitly excluding 'moleculekit.tmalign.src' via
2023-05-16T21:53:01,821           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,821           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,821           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,821           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,822           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,822           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,822                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,822                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,822                 directory, all directories are treated like packages.
2023-05-16T21:53:01,822           ********************************************************************************

2023-05-16T21:53:01,823   !!
2023-05-16T21:53:01,823     check.warn(importable)
2023-05-16T21:53:01,823   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-05-16T21:53:01,823   !!

2023-05-16T21:53:01,823           ********************************************************************************
2023-05-16T21:53:01,823           ############################
2023-05-16T21:53:01,823           # Package would be ignored #
2023-05-16T21:53:01,824           ############################
2023-05-16T21:53:01,824           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-05-16T21:53:01,824           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,824           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,824           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-05-16T21:53:01,824           to the `packages` configuration field.

2023-05-16T21:53:01,825           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,825           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,825           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,825           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,825           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,825           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-05-16T21:53:01,826           already explicitly excluding 'moleculekit.wrapping' via
2023-05-16T21:53:01,826           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,826           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,826           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,826           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,826           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,827           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,827                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,827                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,827                 directory, all directories are treated like packages.
2023-05-16T21:53:01,828           ********************************************************************************

2023-05-16T21:53:01,828   !!
2023-05-16T21:53:01,828     check.warn(importable)
2023-05-16T21:53:01,828   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-05-16T21:53:01,829   !!

2023-05-16T21:53:01,829           ********************************************************************************
2023-05-16T21:53:01,829           ############################
2023-05-16T21:53:01,829           # Package would be ignored #
2023-05-16T21:53:01,829           ############################
2023-05-16T21:53:01,830           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-05-16T21:53:01,830           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,830           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,830           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-05-16T21:53:01,830           to the `packages` configuration field.

2023-05-16T21:53:01,831           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,831           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,831           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,831           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,832           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,832           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-05-16T21:53:01,832           already explicitly excluding 'moleculekit.xtc_utils' via
2023-05-16T21:53:01,832           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,832           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,832           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,833           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,833           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,833           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,833                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,834                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,834                 directory, all directories are treated like packages.
2023-05-16T21:53:01,834           ********************************************************************************

2023-05-16T21:53:01,834   !!
2023-05-16T21:53:01,834     check.warn(importable)
2023-05-16T21:53:01,834   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-05-16T21:53:01,835   !!

2023-05-16T21:53:01,835           ********************************************************************************
2023-05-16T21:53:01,836           ############################
2023-05-16T21:53:01,836           # Package would be ignored #
2023-05-16T21:53:01,836           ############################
2023-05-16T21:53:01,836           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-05-16T21:53:01,837           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,837           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,837           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-05-16T21:53:01,837           to the `packages` configuration field.

2023-05-16T21:53:01,837           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,838           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,838           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,838           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,838           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,838           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-05-16T21:53:01,839           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-05-16T21:53:01,839           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,839           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,839           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,839           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,839           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,840           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,840                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,840                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,840                 directory, all directories are treated like packages.
2023-05-16T21:53:01,840           ********************************************************************************

2023-05-16T21:53:01,841   !!
2023-05-16T21:53:01,841     check.warn(importable)
2023-05-16T21:53:01,841   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-05-16T21:53:01,841   !!

2023-05-16T21:53:01,841           ********************************************************************************
2023-05-16T21:53:01,841           ############################
2023-05-16T21:53:01,842           # Package would be ignored #
2023-05-16T21:53:01,842           ############################
2023-05-16T21:53:01,842           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-05-16T21:53:01,842           but it is absent from setuptools' `packages` configuration.

2023-05-16T21:53:01,842           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T21:53:01,842           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-05-16T21:53:01,842           to the `packages` configuration field.

2023-05-16T21:53:01,843           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T21:53:01,843           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T21:53:01,843           instead of `find_packages(...)`/`find:`).

2023-05-16T21:53:01,843           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T21:53:01,843           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T21:53:01,844           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-05-16T21:53:01,844           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-05-16T21:53:01,844           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T21:53:01,844           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T21:53:01,844           combination with a more fine grained `package-data` configuration.

2023-05-16T21:53:01,844           You can read more about "package data files" on setuptools documentation page:

2023-05-16T21:53:01,845           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T21:53:01,845           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T21:53:01,845                 even if it does not contain any `.py` files.
2023-05-16T21:53:01,845                 On the other hand, currently there is no concept of package data
2023-05-16T21:53:01,845                 directory, all directories are treated like packages.
2023-05-16T21:53:01,846           ********************************************************************************

2023-05-16T21:53:01,846   !!
2023-05-16T21:53:01,846     check.warn(importable)
2023-05-16T21:53:01,846   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,846   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:01,846   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-05-16T21:53:01,846   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-05-16T21:53:01,846   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-05-16T21:53:01,847   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-05-16T21:53:01,847   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-05-16T21:53:01,847   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-05-16T21:53:01,847   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-05-16T21:53:01,847   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-05-16T21:53:01,868   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-05-16T21:53:01,870   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-05-16T21:53:01,871   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-05-16T21:53:01,893   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-05-16T21:53:01,895   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-05-16T21:53:01,896   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-05-16T21:53:01,899   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-05-16T21:53:01,901   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-05-16T21:53:02,095   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-05-16T21:53:02,096   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-05-16T21:53:02,099   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-05-16T21:53:02,099   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,100   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,102   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,104   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,106   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,108   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,110   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,112   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,114   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,116   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,118   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,120   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,122   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,125   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,127   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,129   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,131   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,133   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,135   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,137   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,139   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,141   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,143   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,145   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,147   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,149   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,151   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,153   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,156   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,158   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,160   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,162   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,164   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,166   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,168   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,170   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,172   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,174   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,176   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,178   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,180   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,182   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,184   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,186   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,188   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,190   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,192   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,194   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,196   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,198   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,200   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,202   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,204   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,206   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,208   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,210   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,212   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,215   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,217   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,219   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,221   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,223   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,225   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,227   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,229   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,231   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,233   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,235   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,237   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,239   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,241   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,243   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,245   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,247   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,249   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,251   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,253   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,254   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,256   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,258   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,260   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,262   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,264   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,266   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,268   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,270   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,272   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,274   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,276   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,278   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,280   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,282   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,283   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,285   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,287   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,289   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,291   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,293   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,295   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,297   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,299   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,301   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,303   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,304   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,307   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,309   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,311   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,313   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,315   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,316   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,318   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,320   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,322   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,324   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,326   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,328   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,330   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,332   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,334   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,336   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,338   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,339   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,341   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,343   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,345   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,347   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,349   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,351   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,353   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,355   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,357   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,359   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,361   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,363   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,365   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,366   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,368   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,370   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,372   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,374   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,377   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,378   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,380   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,382   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,384   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,386   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,388   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,390   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,392   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,394   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,396   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,398   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,400   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,401   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,403   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,405   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,408   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,409   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,411   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,413   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,415   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,417   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,419   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,421   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,423   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,425   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,427   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,429   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,431   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,433   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,435   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,437   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,439   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,440   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,442   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,444   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T21:53:02,446   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T21:53:02,447   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T21:53:02,463   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T21:53:02,465   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T21:53:02,467   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-05-16T21:53:02,468   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-05-16T21:53:02,470   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-05-16T21:53:02,471   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-05-16T21:53:02,476   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-05-16T21:53:02,477   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-05-16T21:53:02,492   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-05-16T21:53:02,494   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T21:53:02,495   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T21:53:02,510   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T21:53:02,512   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T21:53:02,514   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-05-16T21:53:02,515   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-05-16T21:53:02,517   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-05-16T21:53:02,519   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-05-16T21:53:02,521   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T21:53:02,522   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T21:53:02,526   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T21:53:02,528   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T21:53:02,530   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-05-16T21:53:02,531   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-05-16T21:53:02,547   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-05-16T21:53:02,549   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-05-16T21:53:02,550   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-05-16T21:53:02,566   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-05-16T21:53:02,568   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-05-16T21:53:02,569   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-05-16T21:53:02,586   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-05-16T21:53:02,588   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-05-16T21:53:02,589   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-05-16T21:53:02,605   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-05-16T21:53:02,616   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-05-16T21:53:02,617   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.6.6'
2023-05-16T21:53:02,617   running build_ext
2023-05-16T21:53:02,626   building 'moleculekit.interactions.hbonds' extension
2023-05-16T21:53:02,627   creating build/temp.linux-armv7l-cpython-39
2023-05-16T21:53:02,627   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-05-16T21:53:02,628   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-05-16T21:53:02,629   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-05-16T21:53:02,630   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-05-16T21:53:02,889   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:53:02,889                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:53:02,889                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:53:02,889                    from moleculekit/interactions/hbonds/hbonds.cpp:786:
2023-05-16T21:53:02,889   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:53:02,889      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:53:02,890         |  ^~~~~~~
2023-05-16T21:53:21,890   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:53:22,204   building 'moleculekit.interactions.pipi' extension
2023-05-16T21:53:22,205   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-05-16T21:53:22,206   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-05-16T21:53:22,471   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:53:22,472                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:53:22,472                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:53:22,472                    from moleculekit/interactions/pipi/pipi.cpp:786:
2023-05-16T21:53:22,472   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:53:22,472      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:53:22,473         |  ^~~~~~~
2023-05-16T21:53:43,567   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:53:43,888   building 'moleculekit.interactions.cationpi' extension
2023-05-16T21:53:43,889   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-05-16T21:53:43,890   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-05-16T21:53:44,115   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:53:44,116                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:53:44,116                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:53:44,116                    from moleculekit/interactions/cationpi/cationpi.cpp:786:
2023-05-16T21:53:44,116   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:53:44,116      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:53:44,116         |  ^~~~~~~
2023-05-16T21:54:05,101   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:54:05,417   building 'moleculekit.interactions.sigmahole' extension
2023-05-16T21:54:05,418   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-05-16T21:54:05,418   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-05-16T21:54:05,653   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:54:05,653                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:54:05,653                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:54:05,654                    from moleculekit/interactions/sigmahole/sigmahole.cpp:786:
2023-05-16T21:54:05,654   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:54:05,654      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:54:05,654         |  ^~~~~~~
2023-05-16T21:54:26,313   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:54:26,622   building 'moleculekit.wrapping' extension
2023-05-16T21:54:26,622   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-05-16T21:54:26,623   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-05-16T21:54:26,851   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:54:26,851                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:54:26,852                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:54:26,852                    from moleculekit/wrapping/wrapping.cpp:786:
2023-05-16T21:54:26,852   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:54:26,852      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:54:26,852         |  ^~~~~~~
2023-05-16T21:54:44,246   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:54:44,444   building 'moleculekit.bondguesser_utils' extension
2023-05-16T21:54:44,444   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-05-16T21:54:44,445   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-05-16T21:54:44,674   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:54:44,675                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:54:44,675                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:54:44,675                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:786:
2023-05-16T21:54:44,675   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:54:44,675      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:54:44,675         |  ^~~~~~~
2023-05-16T21:54:45,838   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-05-16T21:54:45,838   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2962:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-05-16T21:54:45,839    2962 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-05-16T21:54:45,839         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-05-16T21:54:45,839   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2974:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-05-16T21:54:45,839    2974 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-05-16T21:54:45,839         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-05-16T21:54:45,839   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2986:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-05-16T21:54:45,840    2986 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-05-16T21:54:45,840         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-05-16T21:54:45,840   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3025:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,840    3025 |         __pyx_t_12 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T21:54:45,840         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,840   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3064:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,840    3064 |         __pyx_t_12 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T21:54:45,841         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,841   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3103:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,841    3103 |         __pyx_t_12 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,841         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,841   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3142:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,841    3142 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T21:54:45,841         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,842   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3148:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,842    3148 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T21:54:45,842         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,842   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3189:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,842    3189 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T21:54:45,842         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,842   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3195:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,843    3195 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,843         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,843   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3236:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,843    3236 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T21:54:45,843         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,843   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3242:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,843    3242 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,843         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,844   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3283:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,844    3283 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T21:54:45,844         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,844   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3336:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,844    3336 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,844         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,845   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3383:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,845    3383 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,845         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,845   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3424:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,846    3424 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T21:54:45,846         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,846   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3430:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,846    3430 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T21:54:45,846         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,846   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3436:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,846    3436 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,847         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,847   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3483:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,847    3483 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T21:54:45,847         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,847   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3489:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,847    3489 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,847         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,848   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3530:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,848    3530 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T21:54:45,848         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,848   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3542:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,848    3542 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,848         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,849   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3595:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T21:54:45,849    3595 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T21:54:45,849         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,875   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-05-16T21:54:45,875   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4144:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T21:54:45,875    4144 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_n_boxes) != 0);
2023-05-16T21:54:45,875         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-05-16T21:54:45,876   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4181:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T21:54:45,876    4181 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_boxidx) != 0);
2023-05-16T21:54:45,876         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-05-16T21:55:02,516   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:55:02,807   building 'moleculekit.atomselect_utils' extension
2023-05-16T21:55:02,807   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-05-16T21:55:02,808   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-05-16T21:55:03,038   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:55:03,038                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:55:03,038                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:55:03,038                    from moleculekit/atomselect_utils/atomselect_utils.cpp:786:
2023-05-16T21:55:03,038   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:55:03,039      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:55:03,039         |  ^~~~~~~
2023-05-16T21:55:04,345   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-05-16T21:55:04,346   moleculekit/atomselect_utils/atomselect_utils.cpp:5414:162: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T21:55:04,346    5414 |       __pyx_t_3 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum) != 0);
2023-05-16T21:55:04,346         |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-05-16T21:55:04,350   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-05-16T21:55:04,351   moleculekit/atomselect_utils/atomselect_utils.cpp:5668:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T21:55:04,351    5668 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2023-05-16T21:55:04,351         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T21:55:04,356   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-05-16T21:55:04,356   moleculekit/atomselect_utils/atomselect_utils.cpp:5934:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T21:55:04,356    5934 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2023-05-16T21:55:04,356         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T21:55:27,256   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:55:27,623   building 'moleculekit.distance_utils' extension
2023-05-16T21:55:27,623   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-05-16T21:55:27,624   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-05-16T21:55:27,857   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:55:27,857                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:55:27,857                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:55:27,857                    from moleculekit/distance_utils/distance_utils.cpp:786:
2023-05-16T21:55:27,857   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:55:27,857      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:55:27,858         |  ^~~~~~~
2023-05-16T21:55:50,066   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:55:50,386   building 'moleculekit.occupancy_utils' extension
2023-05-16T21:55:50,387   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-05-16T21:55:50,387   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-05-16T21:55:50,611   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:55:50,611                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:55:50,611                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:55:50,612                    from moleculekit/occupancy_utils/occupancy_utils.cpp:786:
2023-05-16T21:55:50,612   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:55:50,612      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:55:50,612         |  ^~~~~~~
2023-05-16T21:56:07,254   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:56:07,460   building 'moleculekit.xtc' extension
2023-05-16T21:56:07,461   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T21:56:07,461   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T21:56:07,463   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-05-16T21:56:07,699   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,699      66 |  "OK",
2023-05-16T21:56:07,699         |  ^~~~
2023-05-16T21:56:07,700   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,700      67 |  "Header",
2023-05-16T21:56:07,700         |  ^~~~~~~~
2023-05-16T21:56:07,700   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,700      68 |  "String",
2023-05-16T21:56:07,700         |  ^~~~~~~~
2023-05-16T21:56:07,701   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,701      69 |  "Double",
2023-05-16T21:56:07,701         |  ^~~~~~~~
2023-05-16T21:56:07,701   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,701      70 |  "Integer",
2023-05-16T21:56:07,701         |  ^~~~~~~~~
2023-05-16T21:56:07,702   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,702      71 |  "Float",
2023-05-16T21:56:07,702         |  ^~~~~~~
2023-05-16T21:56:07,702   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,702      72 |  "Unsigned integer",
2023-05-16T21:56:07,702         |  ^~~~~~~~~~~~~~~~~~
2023-05-16T21:56:07,703   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,703      73 |  "Compressed 3D coordinate",
2023-05-16T21:56:07,703         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:56:07,703   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,703      74 |  "Closing file",
2023-05-16T21:56:07,703         |  ^~~~~~~~~~~~~~
2023-05-16T21:56:07,704   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,704      75 |  "Magic number",
2023-05-16T21:56:07,704         |  ^~~~~~~~~~~~~~
2023-05-16T21:56:07,704   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,704      76 |  "Not enough memory",
2023-05-16T21:56:07,704         |  ^~~~~~~~~~~~~~~~~~~
2023-05-16T21:56:07,705   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,705      77 |  "End of file",
2023-05-16T21:56:07,705         |  ^~~~~~~~~~~~~
2023-05-16T21:56:07,705   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T21:56:07,705      78 |  "File not found"
2023-05-16T21:56:07,705         |  ^~~~~~~~~~~~~~~~
2023-05-16T21:56:07,713   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-05-16T21:56:07,714   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,714     459 |     while (size >= num && num_of_bits < 32)
2023-05-16T21:56:07,714         |            ~~~~~^~~~~~
2023-05-16T21:56:07,715   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-05-16T21:56:07,715   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,716     505 |     while (bytes[num_of_bytes] >= num)
2023-05-16T21:56:07,716         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-05-16T21:56:07,718   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-05-16T21:56:07,718   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,719     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-05-16T21:56:07,719         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-05-16T21:56:07,719   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,719     616 |   for (i = 0; i < num_of_bytes; i++)
2023-05-16T21:56:07,719         |               ~~^~~~~~~~~~~~~~
2023-05-16T21:56:07,720   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,720     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-05-16T21:56:07,720         |               ~~^~~~~~~~~~~~~~~~
2023-05-16T21:56:07,722   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-05-16T21:56:07,722   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,722     664 |   if (lastbits < num_of_bits)
2023-05-16T21:56:07,722         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-05-16T21:56:07,726   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-05-16T21:56:07,726   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,726     785 |  if(size3>xfp->buf1size)
2023-05-16T21:56:07,727         |     ~~~~~^~~~~~~~~~~~~~
2023-05-16T21:56:07,729   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,729     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-05-16T21:56:07,729         |                   ^
2023-05-16T21:56:07,732   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,732     932 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T21:56:07,732         |        ~~~~~~~~~^~~~~~~~
2023-05-16T21:56:07,733   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,733     935 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T21:56:07,733         |        ~~~~~~~~~^~~~~~~~
2023-05-16T21:56:07,734   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,734     938 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T21:56:07,734         |        ~~~~~~~~~^~~~~~~~
2023-05-16T21:56:07,734   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,735     945 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T21:56:07,735         |        ~~~~~~~~~^~~~~~~~
2023-05-16T21:56:07,735   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,735     948 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T21:56:07,735         |        ~~~~~~~~~^~~~~~~~
2023-05-16T21:56:07,736   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,736     951 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T21:56:07,736         |        ~~~~~~~~~^~~~~~~~
2023-05-16T21:56:07,737   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-05-16T21:56:07,737     756 |  int smallidx,  minidx, maxidx;
2023-05-16T21:56:07,737         |                 ^~~~~~
2023-05-16T21:56:07,738   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-05-16T21:56:07,738     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-05-16T21:56:07,738         |                         ^~~~~~
2023-05-16T21:56:07,738   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-05-16T21:56:07,738     763 |  int errval=1;
2023-05-16T21:56:07,738         |      ^~~~~~
2023-05-16T21:56:07,741   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-05-16T21:56:07,741   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,741    1011 |  if(size3>xfp->buf1size)
2023-05-16T21:56:07,741         |     ~~~~~^~~~~~~~~~~~~~
2023-05-16T21:56:07,744   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,744    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-05-16T21:56:07,744         |                     ~~~~~~~~^~~~~~~
2023-05-16T21:56:07,745   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,745    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-05-16T21:56:07,745         |                    ~~~~~~~~^~~~~~~
2023-05-16T21:56:07,746   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,747    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-05-16T21:56:07,747         |                    ~~~~~~~~^~~~~~~
2023-05-16T21:56:07,748   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,749    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-05-16T21:56:07,749         |                  ^
2023-05-16T21:56:07,749   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,750    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-05-16T21:56:07,750         |                   ^
2023-05-16T21:56:07,754   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,754    1275 |  if(tmp==(unsigned int)buf2[0])
2023-05-16T21:56:07,754         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:56:07,755   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-05-16T21:56:07,755    1001 |  int errval;
2023-05-16T21:56:07,755         |      ^~~~~~
2023-05-16T21:56:07,758   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-05-16T21:56:07,758   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,759    1316 |  if(size3>xfp->buf1size)
2023-05-16T21:56:07,759         |     ~~~~~^~~~~~~~~~~~~~
2023-05-16T21:56:07,761   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,761    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-05-16T21:56:07,761         |                   ^
2023-05-16T21:56:07,764   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-05-16T21:56:07,765    1289 |  int smallidx,  maxidx, minidx;
2023-05-16T21:56:07,765         |                         ^~~~~~
2023-05-16T21:56:07,765   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-05-16T21:56:07,765    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-05-16T21:56:07,765         |                         ^~~~~~
2023-05-16T21:56:07,765   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-05-16T21:56:07,766    1297 |  int errval=1;
2023-05-16T21:56:07,766         |      ^~~~~~
2023-05-16T21:56:07,768   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-05-16T21:56:07,768   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,768    1513 |  if(size3>xfp->buf1size) {
2023-05-16T21:56:07,769         |     ~~~~~^~~~~~~~~~~~~~
2023-05-16T21:56:07,773   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,773    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-05-16T21:56:07,773         |                  ^
2023-05-16T21:56:07,774   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T21:56:07,774    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-05-16T21:56:07,775         |                   ^
2023-05-16T21:56:07,778   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T21:56:07,778    1743 |  if(tmp==(unsigned int)buf2[0])
2023-05-16T21:56:07,778         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-05-16T21:56:07,779   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-05-16T21:56:07,779    1504 |  int errval=1;
2023-05-16T21:56:07,779         |      ^~~~~~
2023-05-16T21:56:10,036   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-05-16T21:56:10,286   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-05-16T21:56:10,875   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-05-16T21:56:10,875   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-05-16T21:56:10,876     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-05-16T21:56:10,876         |      ^~~
2023-05-16T21:56:10,882   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-05-16T21:56:10,882   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-05-16T21:56:10,882     418 |  int nf3 = nframes * 3;
2023-05-16T21:56:10,883         |      ^~~
2023-05-16T21:56:10,887   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-05-16T21:56:10,887   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-05-16T21:56:10,887     491 |  int reading_index = 0;
2023-05-16T21:56:10,887         |      ^~~~~~~~~~~~~
2023-05-16T21:56:10,887   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-05-16T21:56:10,888     492 |  int writing_index = 0;
2023-05-16T21:56:10,888         |      ^~~~~~~~~~~~~
2023-05-16T21:56:11,648   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-05-16T21:56:11,871   In file included from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T21:56:11,872                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T21:56:11,872                    from /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T21:56:11,872                    from moleculekit/xtc_utils/xtc.cpp:788:
2023-05-16T21:56:11,872   /tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T21:56:11,872      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T21:56:11,872         |  ^~~~~~~
2023-05-16T21:56:26,742   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:56:27,049   building 'moleculekit.tmalign' extension
2023-05-16T21:56:27,049   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T21:56:27,050   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-05-16T21:56:27,054   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-05-16T21:56:56,492   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-g3vqv7sr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-05-16T21:57:08,893   In file included from /usr/include/c++/10/vector:72,
2023-05-16T21:57:08,894                    from moleculekit/tmalign/tmalign_util.cpp:802:
2023-05-16T21:57:08,894   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-05-16T21:57:08,894   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-05-16T21:57:08,894     426 |       vector<_Tp, _Alloc>::
2023-05-16T21:57:08,894         |       ^~~~~~~~~~~~~~~~~~~
2023-05-16T21:57:09,389   In file included from /usr/include/c++/10/vector:67,
2023-05-16T21:57:09,390                    from moleculekit/tmalign/tmalign_util.cpp:802:
2023-05-16T21:57:09,390   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject*, PyObject*)’:
2023-05-16T21:57:09,390   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-05-16T21:57:09,390    1198 |    _M_realloc_insert(end(), __x);
2023-05-16T21:57:09,390         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T21:57:09,391   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-05-16T21:57:09,391    1198 |    _M_realloc_insert(end(), __x);
2023-05-16T21:57:09,391         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T21:57:09,393   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-05-16T21:57:09,393    1198 |    _M_realloc_insert(end(), __x);
2023-05-16T21:57:09,393         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T21:57:11,497   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-05-16T21:57:11,939   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-05-16T21:57:11,940   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.6.6'
2023-05-16T21:57:11,940   installing to build/bdist.linux-armv7l/wheel
2023-05-16T21:57:11,940   running install
2023-05-16T21:57:11,965   running install_lib
2023-05-16T21:57:11,971   creating build/bdist.linux-armv7l
2023-05-16T21:57:11,972   creating build/bdist.linux-armv7l/wheel
2023-05-16T21:57:11,974   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:11,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:11,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:11,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:11,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:11,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:11,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:11,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:11,989   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-05-16T21:57:11,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-05-16T21:57:12,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-05-16T21:57:12,007   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-05-16T21:57:12,008   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-05-16T21:57:12,012   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,024   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,106   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,108   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-05-16T21:57:12,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,182   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,235   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,264   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,279   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,286   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T21:57:12,319   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-05-16T21:57:12,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-05-16T21:57:12,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-05-16T21:57:12,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-05-16T21:57:12,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-05-16T21:57:12,535   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-05-16T21:57:12,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-05-16T21:57:12,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-05-16T21:57:12,563   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T21:57:12,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T21:57:12,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T21:57:12,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T21:57:12,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T21:57:12,575   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T21:57:12,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T21:57:12,579   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T21:57:12,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T21:57:12,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T21:57:12,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T21:57:12,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T21:57:12,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:12,595   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T21:57:12,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T21:57:12,599   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-05-16T21:57:12,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-05-16T21:57:12,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-05-16T21:57:12,620   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-05-16T21:57:12,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-05-16T21:57:12,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-05-16T21:57:12,645   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-05-16T21:57:12,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-05-16T21:57:12,662   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-05-16T21:57:12,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T21:57:12,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T21:57:12,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T21:57:12,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T21:57:12,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T21:57:12,789   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-05-16T21:57:12,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-05-16T21:57:12,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-05-16T21:57:12,809   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-05-16T21:57:12,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-05-16T21:57:12,828   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-05-16T21:57:12,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-05-16T21:57:12,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-05-16T21:57:12,836   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-05-16T21:57:12,838   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-05-16T21:57:12,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-05-16T21:57:12,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-05-16T21:57:12,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-05-16T21:57:12,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-05-16T21:57:12,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-05-16T21:57:12,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:12,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:12,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:12,897   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-05-16T21:57:12,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-05-16T21:57:12,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-05-16T21:57:12,918   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,947   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-05-16T21:57:12,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-05-16T21:57:12,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-05-16T21:57:12,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T21:57:12,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:12,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,031   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T21:57:13,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T21:57:13,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T21:57:13,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T21:57:13,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T21:57:13,041   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-05-16T21:57:13,042   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-05-16T21:57:13,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-05-16T21:57:13,049   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-05-16T21:57:13,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-05-16T21:57:13,085   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-05-16T21:57:13,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-05-16T21:57:13,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-05-16T21:57:13,090   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-05-16T21:57:13,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-05-16T21:57:13,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-05-16T21:57:13,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,133   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-05-16T21:57:13,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-05-16T21:57:13,136   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T21:57:13,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T21:57:13,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T21:57:13,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T21:57:13,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T21:57:13,147   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-05-16T21:57:13,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-05-16T21:57:13,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-05-16T21:57:13,151   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T21:57:13,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T21:57:13,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T21:57:13,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T21:57:13,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T21:57:13,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,192   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-05-16T21:57:13,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-05-16T21:57:13,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-05-16T21:57:13,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-05-16T21:57:13,202   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T21:57:13,238   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-05-16T21:57:13,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-05-16T21:57:13,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-05-16T21:57:13,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,286   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T21:57:13,321   running install_egg_info
2023-05-16T21:57:13,327   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.6.6-py3.9.egg-info
2023-05-16T21:57:13,341   running install_scripts
2023-05-16T21:57:13,391   creating build/bdist.linux-armv7l/wheel/moleculekit-1.6.6.dist-info/WHEEL
2023-05-16T21:57:13,394   creating '/tmp/pip-wheel-vsgwerjt/.tmp-54mgq62x/moleculekit-1.6.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-05-16T21:57:13,397   adding 'moleculekit/__init__.py'
2023-05-16T21:57:13,399   adding 'moleculekit/_version.py'
2023-05-16T21:57:13,400   adding 'moleculekit/align.py'
2023-05-16T21:57:13,694   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:13,705   adding 'moleculekit/bondguesser.py'
2023-05-16T21:57:13,919   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:13,927   adding 'moleculekit/config.py'
2023-05-16T21:57:13,928   adding 'moleculekit/dihedral.py'
2023-05-16T21:57:14,193   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:14,203   adding 'moleculekit/home.py'
2023-05-16T21:57:14,205   adding 'moleculekit/logging.ini'
2023-05-16T21:57:14,218   adding 'moleculekit/molecule.py'
2023-05-16T21:57:14,418   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:14,426   adding 'moleculekit/opm.py'
2023-05-16T21:57:14,428   adding 'moleculekit/periodictable.py'
2023-05-16T21:57:14,429   adding 'moleculekit/pymolgraphics.py'
2023-05-16T21:57:14,430   adding 'moleculekit/rcsb.py'
2023-05-16T21:57:14,432   adding 'moleculekit/rdkitintegration.py'
2023-05-16T21:57:14,445   adding 'moleculekit/readers.py'
2023-05-16T21:57:15,024   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:15,047   adding 'moleculekit/util.py'
2023-05-16T21:57:15,048   adding 'moleculekit/version.py'
2023-05-16T21:57:15,050   adding 'moleculekit/viewer.py'
2023-05-16T21:57:15,051   adding 'moleculekit/vmd_wrapper'
2023-05-16T21:57:15,053   adding 'moleculekit/vmdgraphics.py'
2023-05-16T21:57:15,055   adding 'moleculekit/vmdviewer.py'
2023-05-16T21:57:15,261   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:15,273   adding 'moleculekit/writers.py'
2023-05-16T21:57:15,510   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:15,519   adding 'moleculekit/atomselect/__init__.py'
2023-05-16T21:57:15,520   adding 'moleculekit/atomselect/analyze.py'
2023-05-16T21:57:15,523   adding 'moleculekit/atomselect/atomselect.py'
2023-05-16T21:57:15,525   adding 'moleculekit/atomselect/languageparser.py'
2023-05-16T21:57:15,608   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-05-16T21:57:15,618   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-05-16T21:57:15,690   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-05-16T21:57:15,698   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-05-16T21:57:15,773   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-05-16T21:57:15,781   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-05-16T21:57:15,782   adding 'moleculekit/interactions/__init__.py'
2023-05-16T21:57:16,034   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:16,270   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:16,280   adding 'moleculekit/interactions/interactions.py'
2023-05-16T21:57:16,530   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:16,787   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T21:57:16,867   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-05-16T21:57:16,874   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-05-16T21:57:16,946   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-05-16T21:57:16,953   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-05-16T21:57:17,025   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-05-16T21:57:17,033   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-05-16T21:57:17,104   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-05-16T21:57:17,112   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-05-16T21:57:17,179   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-05-16T21:57:17,186   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-05-16T21:57:17,188   adding 'moleculekit/pdbx/__init__.py'
2023-05-16T21:57:17,191   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-05-16T21:57:17,194   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-05-16T21:57:17,197   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-05-16T21:57:17,198   adding 'moleculekit/pdbx/reader/__init__.py'
2023-05-16T21:57:17,200   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-05-16T21:57:17,201   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-05-16T21:57:17,203   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-05-16T21:57:17,204   adding 'moleculekit/pdbx/tests/__init__.py'
2023-05-16T21:57:17,206   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-05-16T21:57:17,207   adding 'moleculekit/pdbx/writer/__init__.py'
2023-05-16T21:57:17,209   adding 'moleculekit/ply/__init__.py'
2023-05-16T21:57:17,213   adding 'moleculekit/ply/lex.py'
2023-05-16T21:57:17,225   adding 'moleculekit/ply/yacc.py'
2023-05-16T21:57:17,227   adding 'moleculekit/projections/__init__.py'
2023-05-16T21:57:17,229   adding 'moleculekit/projections/metriccoordinate.py'
2023-05-16T21:57:17,233   adding 'moleculekit/projections/metricdihedral.py'
2023-05-16T21:57:17,237   adding 'moleculekit/projections/metricdistance.py'
2023-05-16T21:57:17,239   adding 'moleculekit/projections/metricfluctuation.py'
2023-05-16T21:57:17,241   adding 'moleculekit/projections/metricgyration.py'
2023-05-16T21:57:17,244   adding 'moleculekit/projections/metricplumed2.py'
2023-05-16T21:57:17,246   adding 'moleculekit/projections/metricrmsd.py'
2023-05-16T21:57:17,248   adding 'moleculekit/projections/metricsasa.py'
2023-05-16T21:57:17,250   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-05-16T21:57:17,252   adding 'moleculekit/projections/metricshell.py'
2023-05-16T21:57:17,254   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-05-16T21:57:17,255   adding 'moleculekit/projections/metrictmscore.py'
2023-05-16T21:57:17,257   adding 'moleculekit/projections/projection.py'
2023-05-16T21:57:17,258   adding 'moleculekit/projections/util.py'
2023-05-16T21:57:17,260   adding 'moleculekit/share/ALA.cif'
2023-05-16T21:57:17,261   adding 'moleculekit/share/backbone.cif'
2023-05-16T21:57:18,569   adding 'moleculekit/share/opm_sequences.json'
2023-05-16T21:57:18,654   adding 'moleculekit/share/atomselect/atomselect.json'
2023-05-16T21:57:18,659   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-05-16T21:57:18,660   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-05-16T21:57:18,662   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-05-16T21:57:18,663   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-05-16T21:57:18,664   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-05-16T21:57:18,665   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-05-16T21:57:18,666   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-05-16T21:57:18,668   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-05-16T21:57:18,669   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-05-16T21:57:18,670   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-05-16T21:57:18,671   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-05-16T21:57:18,673   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-05-16T21:57:18,674   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-05-16T21:57:18,675   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-05-16T21:57:18,676   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-05-16T21:57:18,677   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-05-16T21:57:18,679   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-05-16T21:57:18,680   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-05-16T21:57:18,681   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-05-16T21:57:18,682   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-05-16T21:57:18,684   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-05-16T21:57:18,685   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-05-16T21:57:18,686   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-05-16T21:57:18,687   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-05-16T21:57:18,689   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-05-16T21:57:18,690   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-05-16T21:57:18,691   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-05-16T21:57:18,692   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-05-16T21:57:18,693   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-05-16T21:57:18,695   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-05-16T21:57:18,696   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-05-16T21:57:18,697   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-05-16T21:57:18,698   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-05-16T21:57:18,699   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-05-16T21:57:18,700   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-05-16T21:57:18,702   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-05-16T21:57:18,703   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-05-16T21:57:18,704   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-05-16T21:57:18,705   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-05-16T21:57:18,707   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-05-16T21:57:18,708   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-05-16T21:57:18,709   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-05-16T21:57:18,710   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-05-16T21:57:18,712   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-05-16T21:57:18,713   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-05-16T21:57:18,714   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-05-16T21:57:18,715   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-05-16T21:57:18,716   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-05-16T21:57:18,718   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-05-16T21:57:18,719   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-05-16T21:57:18,720   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-05-16T21:57:18,721   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-05-16T21:57:18,723   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-05-16T21:57:18,724   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-05-16T21:57:18,725   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-05-16T21:57:18,726   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-05-16T21:57:18,727   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-05-16T21:57:18,729   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-05-16T21:57:18,730   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-05-16T21:57:18,731   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-05-16T21:57:18,732   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-05-16T21:57:18,733   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-05-16T21:57:18,734   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-05-16T21:57:18,736   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-05-16T21:57:18,737   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-05-16T21:57:18,738   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-05-16T21:57:18,739   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-05-16T21:57:18,741   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-05-16T21:57:18,742   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-05-16T21:57:18,743   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-05-16T21:57:18,744   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-05-16T21:57:18,746   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-05-16T21:57:18,747   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-05-16T21:57:18,748   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-05-16T21:57:18,749   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-05-16T21:57:18,750   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-05-16T21:57:18,752   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-05-16T21:57:18,753   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-05-16T21:57:18,754   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-05-16T21:57:18,755   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-05-16T21:57:18,756   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-05-16T21:57:18,758   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-05-16T21:57:18,759   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-05-16T21:57:18,760   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-05-16T21:57:18,762   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-05-16T21:57:18,763   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-05-16T21:57:18,764   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-05-16T21:57:18,765   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-05-16T21:57:18,767   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-05-16T21:57:18,768   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-05-16T21:57:18,769   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-05-16T21:57:18,770   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-05-16T21:57:18,771   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-05-16T21:57:18,773   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-05-16T21:57:18,774   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-05-16T21:57:18,775   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-05-16T21:57:18,776   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-05-16T21:57:18,778   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-05-16T21:57:18,779   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-05-16T21:57:18,780   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-05-16T21:57:18,781   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-05-16T21:57:18,783   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-05-16T21:57:18,784   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-05-16T21:57:18,785   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-05-16T21:57:18,786   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-05-16T21:57:18,788   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-05-16T21:57:18,789   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-05-16T21:57:18,790   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-05-16T21:57:18,791   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-05-16T21:57:18,793   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-05-16T21:57:18,794   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-05-16T21:57:18,795   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-05-16T21:57:18,797   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-05-16T21:57:18,798   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-05-16T21:57:18,799   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-05-16T21:57:18,800   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-05-16T21:57:18,802   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-05-16T21:57:18,803   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-05-16T21:57:18,804   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-05-16T21:57:18,806   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-05-16T21:57:18,807   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-05-16T21:57:18,808   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-05-16T21:57:18,809   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-05-16T21:57:18,811   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-05-16T21:57:18,812   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-05-16T21:57:18,813   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-05-16T21:57:18,815   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-05-16T21:57:18,816   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-05-16T21:57:18,817   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-05-16T21:57:18,818   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-05-16T21:57:18,820   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-05-16T21:57:18,821   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-05-16T21:57:18,822   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-05-16T21:57:18,824   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-05-16T21:57:18,825   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-05-16T21:57:18,826   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-05-16T21:57:18,827   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-05-16T21:57:18,829   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-05-16T21:57:18,830   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-05-16T21:57:18,831   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-05-16T21:57:18,832   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-05-16T21:57:18,833   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-05-16T21:57:18,835   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-05-16T21:57:18,836   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-05-16T21:57:18,837   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-05-16T21:57:18,838   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-05-16T21:57:18,840   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-05-16T21:57:18,841   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-05-16T21:57:18,842   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-05-16T21:57:18,843   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-05-16T21:57:18,845   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-05-16T21:57:18,846   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-05-16T21:57:18,847   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-05-16T21:57:18,848   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-05-16T21:57:18,850   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-05-16T21:57:18,851   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-05-16T21:57:18,852   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-05-16T21:57:18,853   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-05-16T21:57:18,855   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-05-16T21:57:18,856   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-05-16T21:57:18,857   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-05-16T21:57:18,858   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-05-16T21:57:18,860   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-05-16T21:57:18,861   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-05-16T21:57:18,862   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-05-16T21:57:18,863   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-05-16T21:57:18,865   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-05-16T21:57:18,866   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-05-16T21:57:18,867   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-05-16T21:57:18,868   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-05-16T21:57:18,870   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-05-16T21:57:18,871   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-05-16T21:57:18,872   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-05-16T21:57:18,873   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-05-16T21:57:18,875   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-05-16T21:57:18,876   adding 'moleculekit/smallmol/__init__.py'
2023-05-16T21:57:18,881   adding 'moleculekit/smallmol/smallmol.py'
2023-05-16T21:57:18,884   adding 'moleculekit/smallmol/smallmollib.py'
2023-05-16T21:57:18,886   adding 'moleculekit/smallmol/test_smallmol.py'
2023-05-16T21:57:18,888   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-05-16T21:57:18,890   adding 'moleculekit/smallmol/util.py'
2023-05-16T21:57:18,891   adding 'moleculekit/smallmol/tools/__init__.py'
2023-05-16T21:57:18,893   adding 'moleculekit/smallmol/tools/clustering.py'
2023-05-16T21:57:18,895   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-05-16T21:57:18,896   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-05-16T21:57:18,967   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-05-16T21:57:18,974   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-05-16T21:57:18,975   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-05-16T21:57:18,977   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-05-16T21:57:18,994   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-05-16T21:57:18,998   adding 'moleculekit/tools/__init__.py'
2023-05-16T21:57:19,000   adding 'moleculekit/tools/atomtyper.py'
2023-05-16T21:57:19,002   adding 'moleculekit/tools/autosegment.py'
2023-05-16T21:57:19,004   adding 'moleculekit/tools/crystalpacking.py'
2023-05-16T21:57:19,007   adding 'moleculekit/tools/detect.py'
2023-05-16T21:57:19,008   adding 'moleculekit/tools/docking.py'
2023-05-16T21:57:19,010   adding 'moleculekit/tools/graphalignment.py'
2023-05-16T21:57:19,012   adding 'moleculekit/tools/hhblitsprofile.py'
2023-05-16T21:57:19,013   adding 'moleculekit/tools/moleculechecks.py'
2023-05-16T21:57:19,020   adding 'moleculekit/tools/preparation.py'
2023-05-16T21:57:19,022   adding 'moleculekit/tools/preparation_customres.py'
2023-05-16T21:57:19,024   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-05-16T21:57:19,027   adding 'moleculekit/tools/voxeldescriptors.py'
2023-05-16T21:57:19,029   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-05-16T21:57:19,030   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-05-16T21:57:19,099   adding 'moleculekit/wrapping/wrapping.cpp'
2023-05-16T21:57:19,106   adding 'moleculekit/wrapping/wrapping.pyx'
2023-05-16T21:57:19,176   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-05-16T21:57:19,184   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-05-16T21:57:19,185   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-05-16T21:57:19,188   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-05-16T21:57:19,190   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-05-16T21:57:19,191   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-05-16T21:57:19,198   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-05-16T21:57:19,200   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-05-16T21:57:19,202   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-05-16T21:57:19,204   adding 'moleculekit-1.6.6.dist-info/LICENSE'
2023-05-16T21:57:19,206   adding 'moleculekit-1.6.6.dist-info/METADATA'
2023-05-16T21:57:19,207   adding 'moleculekit-1.6.6.dist-info/WHEEL'
2023-05-16T21:57:19,208   adding 'moleculekit-1.6.6.dist-info/top_level.txt'
2023-05-16T21:57:19,213   adding 'moleculekit-1.6.6.dist-info/RECORD'
2023-05-16T21:57:19,337   removing build/bdist.linux-armv7l/wheel
2023-05-16T21:57:19,629   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-05-16T21:57:19,876   Created wheel for moleculekit: filename=moleculekit-1.6.6-cp39-cp39-linux_armv7l.whl size=11488769 sha256=937e4c4afb66b34174d9661390ecf089240af165a5f6c02e963db609752325b2
2023-05-16T21:57:19,877   Stored in directory: /tmp/pip-ephem-wheel-cache-l_u9hu8j/wheels/be/70/17/750d326c4bed66b32619261163332753c8b5b8e20b220b5337
2023-05-16T21:57:19,902 Successfully built moleculekit
2023-05-16T21:57:20,269 Removed build tracker: '/tmp/pip-build-tracker-dht0z0e9'