2023-05-16T22:11:43,652 Created temporary directory: /tmp/pip-build-tracker-tn1o2ktw
2023-05-16T22:11:43,653 Initialized build tracking at /tmp/pip-build-tracker-tn1o2ktw
2023-05-16T22:11:43,653 Created build tracker: /tmp/pip-build-tracker-tn1o2ktw
2023-05-16T22:11:43,653 Entered build tracker: /tmp/pip-build-tracker-tn1o2ktw
2023-05-16T22:11:43,654 Created temporary directory: /tmp/pip-wheel-oarw77fi
2023-05-16T22:11:43,657 Created temporary directory: /tmp/pip-ephem-wheel-cache-dnpvap87
2023-05-16T22:11:43,683 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-16T22:11:43,686 2 location(s) to search for versions of moleculekit:
2023-05-16T22:11:43,686 * https://pypi.org/simple/moleculekit/
2023-05-16T22:11:43,686 * https://www.piwheels.org/simple/moleculekit/
2023-05-16T22:11:43,687 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-05-16T22:11:43,687 Getting page https://pypi.org/simple/moleculekit/
2023-05-16T22:11:43,689 Found index url https://pypi.org/simple/
2023-05-16T22:11:43,818 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-05-16T22:11:43,857   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,857   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-05-16T22:11:43,857   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,858   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-05-16T22:11:43,858   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,858   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-05-16T22:11:43,858   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,859   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-05-16T22:11:43,859   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,859   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-05-16T22:11:43,859   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,860   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-05-16T22:11:43,860   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,860   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-05-16T22:11:43,860   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,860   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-05-16T22:11:43,861   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,861   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-05-16T22:11:43,861   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,861   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-05-16T22:11:43,862   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,862   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-05-16T22:11:43,862   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,862   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-05-16T22:11:43,863   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,863   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-05-16T22:11:43,863   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,863   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-05-16T22:11:43,864   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,864   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-05-16T22:11:43,864   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,864   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-05-16T22:11:43,865   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,865   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-05-16T22:11:43,865   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,865   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-05-16T22:11:43,865   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,866   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-05-16T22:11:43,866   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,866   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-05-16T22:11:43,866   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,867   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-05-16T22:11:43,867   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,867   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-05-16T22:11:43,867   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,867   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-05-16T22:11:43,868   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,868   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-05-16T22:11:43,868   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,868   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-05-16T22:11:43,869   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,869   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-05-16T22:11:43,869   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,869   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-05-16T22:11:43,869   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,870   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-05-16T22:11:43,870   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,870   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-05-16T22:11:43,870   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,871   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-05-16T22:11:43,871   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,871   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-05-16T22:11:43,871   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,872   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-05-16T22:11:43,872   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-05-16T22:11:43,872   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2023-05-16T22:11:43,872   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-05-16T22:11:43,889   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2023-05-16T22:11:43,889   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2023-05-16T22:11:43,890   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2023-05-16T22:11:43,890   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2023-05-16T22:11:43,890   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2023-05-16T22:11:43,890   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2023-05-16T22:11:43,891   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2023-05-16T22:11:43,891   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2023-05-16T22:11:43,891   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2023-05-16T22:11:43,891   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
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2023-05-16T22:11:43,893   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2023-05-16T22:11:43,893   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2023-05-16T22:11:43,893   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2023-05-16T22:11:43,894   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2023-05-16T22:11:43,894   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2023-05-16T22:11:43,894   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2023-05-16T22:11:43,895   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2023-05-16T22:11:43,895   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2023-05-16T22:11:43,895   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2023-05-16T22:11:43,895   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2023-05-16T22:11:43,896   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2023-05-16T22:11:43,896   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-05-16T22:11:43,896   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2023-05-16T22:11:43,896   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2023-05-16T22:11:43,897   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2023-05-16T22:11:43,897   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2023-05-16T22:11:43,897   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2023-05-16T22:11:43,897   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2023-05-16T22:11:43,898   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
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2023-05-16T22:11:43,898   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
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2023-05-16T22:11:43,899   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2023-05-16T22:11:43,900   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
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2023-05-16T22:11:43,901   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
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2023-05-16T22:11:43,902   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2023-05-16T22:11:43,903   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2023-05-16T22:11:43,904   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-05-16T22:11:43,904   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2023-05-16T22:11:43,905   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2023-05-16T22:11:43,905   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2023-05-16T22:11:43,906   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2023-05-16T22:11:43,906   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-05-16T22:11:43,907   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-05-16T22:11:43,907   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2023-05-16T22:11:43,908   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2023-05-16T22:11:43,908   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2023-05-16T22:11:43,909   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2023-05-16T22:11:43,909   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2023-05-16T22:11:43,910   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2023-05-16T22:11:43,911   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2023-05-16T22:11:43,911   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2023-05-16T22:11:43,912   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2023-05-16T22:11:43,912   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2023-05-16T22:11:43,913   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2023-05-16T22:11:43,913 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-05-16T22:11:43,913 Getting page https://www.piwheels.org/simple/moleculekit/
2023-05-16T22:11:43,915 Found index url https://www.piwheels.org/simple/
2023-05-16T22:11:44,177 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2023-05-16T22:11:44,225   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.6.6-cp39-cp39-linux_armv7l.whl#sha256=937e4c4afb66b34174d9661390ecf089240af165a5f6c02e963db609752325b2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-05-16T22:11:44,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,239   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,239   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,239   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,239   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,239   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,240   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,240   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,240   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,240   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,240   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,241   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,241   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,241   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,241   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,241   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,241   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,242   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,242   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,242   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,242   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,242   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,243   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,243   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,243   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,243   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,243   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,244   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,244   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,244   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,244   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,244   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,244   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,245   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,245   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,245   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,245   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,245   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,246   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,246   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,246   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,246   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,246   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,246   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,247   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,247   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,247   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,247   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
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2023-05-16T22:11:44,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,260   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,260   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,260   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,260   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-05-16T22:11:44,261 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-05-16T22:11:44,261 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-05-16T22:11:44,297 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-05-16T22:11:44,314 Collecting moleculekit==1.6.7
2023-05-16T22:11:44,316   Created temporary directory: /tmp/pip-unpack-_1uox56x
2023-05-16T22:11:44,364   Downloading moleculekit-1.6.7.tar.gz (5.8 MB)
2023-05-16T22:11:46,280   Added moleculekit==1.6.7 from https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz to build tracker '/tmp/pip-build-tracker-tn1o2ktw'
2023-05-16T22:11:46,288   Created temporary directory: /tmp/pip-build-env-crq7qglu
2023-05-16T22:11:46,298   Installing build dependencies: started
2023-05-16T22:11:46,299   Running command pip subprocess to install build dependencies
2023-05-16T22:11:47,563   Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-05-16T22:11:47,911   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-16T22:11:49,599   Collecting setuptools
2023-05-16T22:11:49,707     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.7.2-py3-none-any.whl (1.1 MB)
2023-05-16T22:11:51,032   Collecting numpy>=1.18.5
2023-05-16T22:11:52,391     Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.3-cp39-cp39-linux_armv7l.whl (12.3 MB)
2023-05-16T22:11:54,085   Collecting Cython>=0.29.21
2023-05-16T22:11:54,468     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.34-cp39-cp39-linux_armv7l.whl (5.0 MB)
2023-05-16T22:11:54,673   Collecting toml
2023-05-16T22:11:54,690     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-05-16T22:11:54,865   Collecting versioneer[toml]==0.28
2023-05-16T22:11:54,878     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-05-16T22:11:54,896        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 4.1 MB/s eta 0:00:00
2023-05-16T22:11:55,032   Collecting tomli (from versioneer[toml]==0.28)
2023-05-16T22:11:55,048     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-05-16T22:11:56,775   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-05-16T22:11:56,812     Creating /tmp/pip-build-env-crq7qglu/overlay/bin
2023-05-16T22:11:56,815     changing mode of /tmp/pip-build-env-crq7qglu/overlay/bin/versioneer to 755
2023-05-16T22:12:07,408     changing mode of /tmp/pip-build-env-crq7qglu/overlay/bin/f2py to 755
2023-05-16T22:12:07,410     changing mode of /tmp/pip-build-env-crq7qglu/overlay/bin/f2py3 to 755
2023-05-16T22:12:07,413     changing mode of /tmp/pip-build-env-crq7qglu/overlay/bin/f2py3.9 to 755
2023-05-16T22:12:10,811     changing mode of /tmp/pip-build-env-crq7qglu/overlay/bin/cygdb to 755
2023-05-16T22:12:10,813     changing mode of /tmp/pip-build-env-crq7qglu/overlay/bin/cython to 755
2023-05-16T22:12:10,816     changing mode of /tmp/pip-build-env-crq7qglu/overlay/bin/cythonize to 755
2023-05-16T22:12:10,841   Successfully installed Cython-0.29.34 numpy-1.24.3 setuptools-67.7.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-05-16T22:12:11,236   Installing build dependencies: finished with status 'done'
2023-05-16T22:12:11,241   Getting requirements to build wheel: started
2023-05-16T22:12:11,242   Running command Getting requirements to build wheel
2023-05-16T22:12:54,494   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,495   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,495   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,496   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,496   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,496   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,496   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,496   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,497   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,497   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-05-16T22:12:54,497   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-05-16T22:12:54,497   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-05-16T22:12:54,497   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-05-16T22:12:54,497   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-05-16T22:12:54,497   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-05-16T22:12:54,498   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-05-16T22:12:54,498   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-05-16T22:12:54,498   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-05-16T22:12:54,498   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-05-16T22:12:54,498   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-05-16T22:12:54,498   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-05-16T22:12:54,499   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-05-16T22:12:54,569   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-05-16T22:12:54,570     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-05-16T22:12:54,822   running egg_info
2023-05-16T22:12:54,828   writing moleculekit.egg-info/PKG-INFO
2023-05-16T22:12:54,830   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-05-16T22:12:54,832   writing requirements to moleculekit.egg-info/requires.txt
2023-05-16T22:12:54,833   writing top-level names to moleculekit.egg-info/top_level.txt
2023-05-16T22:12:54,862   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-05-16T22:12:54,898   reading manifest template 'MANIFEST.in'
2023-05-16T22:12:55,147   no previously-included directories found matching 'moleculekit/test-data'
2023-05-16T22:12:55,148   no previously-included directories found matching 'moleculekit/tests'
2023-05-16T22:12:55,149   no previously-included directories found matching 'package'
2023-05-16T22:12:55,149   adding license file 'LICENSE'
2023-05-16T22:12:55,166   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-05-16T22:12:56,038   Getting requirements to build wheel: finished with status 'done'
2023-05-16T22:12:56,053   Installing backend dependencies: started
2023-05-16T22:12:56,054   Running command pip subprocess to install backend dependencies
2023-05-16T22:12:57,312   Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-05-16T22:12:57,713   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-16T22:12:58,141   Collecting wheel
2023-05-16T22:12:58,159     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-05-16T22:12:59,441   Installing collected packages: wheel
2023-05-16T22:12:59,660     Creating /tmp/pip-build-env-crq7qglu/normal/bin
2023-05-16T22:12:59,663     changing mode of /tmp/pip-build-env-crq7qglu/normal/bin/wheel to 755
2023-05-16T22:12:59,675   Successfully installed wheel-0.40.0
2023-05-16T22:12:59,896   Installing backend dependencies: finished with status 'done'
2023-05-16T22:12:59,899   Created temporary directory: /tmp/pip-modern-metadata-9te2dl2c
2023-05-16T22:12:59,901   Preparing metadata (pyproject.toml): started
2023-05-16T22:12:59,902   Running command Preparing metadata (pyproject.toml)
2023-05-16T22:13:01,538   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-05-16T22:13:01,539     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-05-16T22:13:01,799   running dist_info
2023-05-16T22:13:01,801   creating /tmp/pip-modern-metadata-9te2dl2c/moleculekit.egg-info
2023-05-16T22:13:01,807   writing /tmp/pip-modern-metadata-9te2dl2c/moleculekit.egg-info/PKG-INFO
2023-05-16T22:13:01,809   writing dependency_links to /tmp/pip-modern-metadata-9te2dl2c/moleculekit.egg-info/dependency_links.txt
2023-05-16T22:13:01,812   writing requirements to /tmp/pip-modern-metadata-9te2dl2c/moleculekit.egg-info/requires.txt
2023-05-16T22:13:01,813   writing top-level names to /tmp/pip-modern-metadata-9te2dl2c/moleculekit.egg-info/top_level.txt
2023-05-16T22:13:01,814   writing manifest file '/tmp/pip-modern-metadata-9te2dl2c/moleculekit.egg-info/SOURCES.txt'
2023-05-16T22:13:01,847   reading manifest file '/tmp/pip-modern-metadata-9te2dl2c/moleculekit.egg-info/SOURCES.txt'
2023-05-16T22:13:01,849   reading manifest template 'MANIFEST.in'
2023-05-16T22:13:02,072   no previously-included directories found matching 'moleculekit/test-data'
2023-05-16T22:13:02,072   no previously-included directories found matching 'moleculekit/tests'
2023-05-16T22:13:02,073   no previously-included directories found matching 'package'
2023-05-16T22:13:02,073   adding license file 'LICENSE'
2023-05-16T22:13:02,086   writing manifest file '/tmp/pip-modern-metadata-9te2dl2c/moleculekit.egg-info/SOURCES.txt'
2023-05-16T22:13:02,094   creating '/tmp/pip-modern-metadata-9te2dl2c/moleculekit-1.6.7.dist-info'
2023-05-16T22:13:02,306   Preparing metadata (pyproject.toml): finished with status 'done'
2023-05-16T22:13:02,313   Source in /tmp/pip-wheel-oarw77fi/moleculekit_fbecd5f7f02442ae9587b36735fae2ce has version 1.6.7, which satisfies requirement moleculekit==1.6.7 from https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz
2023-05-16T22:13:02,313   Removed moleculekit==1.6.7 from https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz from build tracker '/tmp/pip-build-tracker-tn1o2ktw'
2023-05-16T22:13:02,320 Created temporary directory: /tmp/pip-unpack-_nccq5gm
2023-05-16T22:13:02,320 Building wheels for collected packages: moleculekit
2023-05-16T22:13:02,324   Created temporary directory: /tmp/pip-wheel-1bvcyfuc
2023-05-16T22:13:02,324   Destination directory: /tmp/pip-wheel-1bvcyfuc
2023-05-16T22:13:02,326   Building wheel for moleculekit (pyproject.toml): started
2023-05-16T22:13:02,327   Running command Building wheel for moleculekit (pyproject.toml)
2023-05-16T22:13:03,858   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-05-16T22:13:03,858     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-05-16T22:13:04,149   running bdist_wheel
2023-05-16T22:13:04,165   running build
2023-05-16T22:13:04,165   running build_py
2023-05-16T22:13:04,173   creating build
2023-05-16T22:13:04,174   creating build/lib.linux-armv7l-cpython-39
2023-05-16T22:13:04,174   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,176   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,178   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,181   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,183   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,185   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,188   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,191   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,193   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,196   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,199   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,201   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,203   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,205   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,207   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,209   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,211   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,213   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,215   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,217   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,222   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,225   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-05-16T22:13:04,226   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-05-16T22:13:04,231   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-05-16T22:13:04,233   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-05-16T22:13:04,237   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-05-16T22:13:04,238   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-05-16T22:13:04,241   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,242   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,245   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,247   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,250   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,252   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,256   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,262   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,265   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,268   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,272   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,276   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,282   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,287   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,294   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,298   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-05-16T22:13:04,302   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,303   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,306   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,308   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,311   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,313   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,316   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,319   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,321   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,323   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,326   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,328   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,330   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,333   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-05-16T22:13:04,336   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T22:13:04,337   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T22:13:04,340   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T22:13:04,343   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T22:13:04,345   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T22:13:04,347   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T22:13:04,350   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-05-16T22:13:04,355   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T22:13:04,356   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T22:13:04,361   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T22:13:04,365   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T22:13:04,368   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-05-16T22:13:04,373   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-05-16T22:13:04,375   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-05-16T22:13:04,382   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-05-16T22:13:04,386   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-05-16T22:13:04,387   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-05-16T22:13:04,389   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-05-16T22:13:04,392   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T22:13:04,393   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T22:13:04,396   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T22:13:04,399   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T22:13:04,400   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-05-16T22:13:04,404   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T22:13:04,405   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T22:13:04,407   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T22:13:04,409   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T22:13:04,411   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-05-16T22:13:04,414   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-05-16T22:13:04,415   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-05-16T22:13:04,417   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-05-16T22:13:04,419   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T22:13:04,420   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T22:13:04,423   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T22:13:04,425   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T22:13:04,427   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-05-16T22:13:04,429   running egg_info
2023-05-16T22:13:04,436   writing moleculekit.egg-info/PKG-INFO
2023-05-16T22:13:04,438   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-05-16T22:13:04,440   writing requirements to moleculekit.egg-info/requires.txt
2023-05-16T22:13:04,442   writing top-level names to moleculekit.egg-info/top_level.txt
2023-05-16T22:13:04,461   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-05-16T22:13:04,470   reading manifest template 'MANIFEST.in'
2023-05-16T22:13:04,678   no previously-included directories found matching 'moleculekit/test-data'
2023-05-16T22:13:04,679   no previously-included directories found matching 'moleculekit/tests'
2023-05-16T22:13:04,681   no previously-included directories found matching 'package'
2023-05-16T22:13:04,681   adding license file 'LICENSE'
2023-05-16T22:13:04,698   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-05-16T22:13:04,708   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-05-16T22:13:04,708   !!

2023-05-16T22:13:04,709           ********************************************************************************
2023-05-16T22:13:04,709           ############################
2023-05-16T22:13:04,709           # Package would be ignored #
2023-05-16T22:13:04,709           ############################
2023-05-16T22:13:04,709           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-05-16T22:13:04,709           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,709           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,710           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-05-16T22:13:04,710           to the `packages` configuration field.

2023-05-16T22:13:04,710           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,710           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,710           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,710           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,711           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,711           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-05-16T22:13:04,711           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-05-16T22:13:04,711           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,711           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,712           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,712           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,712           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,713           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,713                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,713                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,713                 directory, all directories are treated like packages.
2023-05-16T22:13:04,713           ********************************************************************************

2023-05-16T22:13:04,713   !!
2023-05-16T22:13:04,713     check.warn(importable)
2023-05-16T22:13:04,714   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-05-16T22:13:04,714   !!

2023-05-16T22:13:04,714           ********************************************************************************
2023-05-16T22:13:04,714           ############################
2023-05-16T22:13:04,714           # Package would be ignored #
2023-05-16T22:13:04,714           ############################
2023-05-16T22:13:04,715           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-05-16T22:13:04,715           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,715           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,715           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-05-16T22:13:04,715           to the `packages` configuration field.

2023-05-16T22:13:04,715           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,715           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,716           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,716           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,716           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,716           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-05-16T22:13:04,716           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-05-16T22:13:04,717           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,717           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,717           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,717           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,717           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,718           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,718                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,718                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,718                 directory, all directories are treated like packages.
2023-05-16T22:13:04,718           ********************************************************************************

2023-05-16T22:13:04,718   !!
2023-05-16T22:13:04,718     check.warn(importable)
2023-05-16T22:13:04,718   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-05-16T22:13:04,719   !!

2023-05-16T22:13:04,719           ********************************************************************************
2023-05-16T22:13:04,719           ############################
2023-05-16T22:13:04,719           # Package would be ignored #
2023-05-16T22:13:04,719           ############################
2023-05-16T22:13:04,719           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-05-16T22:13:04,719           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,720           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,720           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-05-16T22:13:04,720           to the `packages` configuration field.

2023-05-16T22:13:04,720           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,720           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,720           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,720           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,721           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,721           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-05-16T22:13:04,721           already explicitly excluding 'moleculekit.distance_utils' via
2023-05-16T22:13:04,721           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,721           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,721           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,722           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,722           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,722           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,722                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,722                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,722                 directory, all directories are treated like packages.
2023-05-16T22:13:04,723           ********************************************************************************

2023-05-16T22:13:04,723   !!
2023-05-16T22:13:04,723     check.warn(importable)
2023-05-16T22:13:04,723   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-05-16T22:13:04,723   !!

2023-05-16T22:13:04,723           ********************************************************************************
2023-05-16T22:13:04,723           ############################
2023-05-16T22:13:04,724           # Package would be ignored #
2023-05-16T22:13:04,724           ############################
2023-05-16T22:13:04,724           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-05-16T22:13:04,724           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,724           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,724           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-05-16T22:13:04,724           to the `packages` configuration field.

2023-05-16T22:13:04,725           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,725           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,725           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,725           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,725           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,725           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-05-16T22:13:04,726           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-05-16T22:13:04,726           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,726           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,726           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,726           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,726           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,727           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,727                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,727                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,727                 directory, all directories are treated like packages.
2023-05-16T22:13:04,727           ********************************************************************************

2023-05-16T22:13:04,727   !!
2023-05-16T22:13:04,727     check.warn(importable)
2023-05-16T22:13:04,728   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-05-16T22:13:04,728   !!

2023-05-16T22:13:04,728           ********************************************************************************
2023-05-16T22:13:04,728           ############################
2023-05-16T22:13:04,728           # Package would be ignored #
2023-05-16T22:13:04,728           ############################
2023-05-16T22:13:04,728           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-05-16T22:13:04,728           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,729           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,729           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-05-16T22:13:04,729           to the `packages` configuration field.

2023-05-16T22:13:04,729           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,729           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,729           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,730           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,730           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,730           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-05-16T22:13:04,730           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-05-16T22:13:04,730           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,730           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,730           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,731           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,731           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,731           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,731                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,732                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,732                 directory, all directories are treated like packages.
2023-05-16T22:13:04,732           ********************************************************************************

2023-05-16T22:13:04,732   !!
2023-05-16T22:13:04,732     check.warn(importable)
2023-05-16T22:13:04,732   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-05-16T22:13:04,732   !!

2023-05-16T22:13:04,733           ********************************************************************************
2023-05-16T22:13:04,733           ############################
2023-05-16T22:13:04,733           # Package would be ignored #
2023-05-16T22:13:04,733           ############################
2023-05-16T22:13:04,733           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-05-16T22:13:04,733           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,733           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,734           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-05-16T22:13:04,734           to the `packages` configuration field.

2023-05-16T22:13:04,734           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,734           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,734           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,734           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,735           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,735           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-05-16T22:13:04,735           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-05-16T22:13:04,735           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,735           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,735           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,736           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,736           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,736           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,736                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,736                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,736                 directory, all directories are treated like packages.
2023-05-16T22:13:04,737           ********************************************************************************

2023-05-16T22:13:04,737   !!
2023-05-16T22:13:04,737     check.warn(importable)
2023-05-16T22:13:04,737   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-05-16T22:13:04,737   !!

2023-05-16T22:13:04,737           ********************************************************************************
2023-05-16T22:13:04,737           ############################
2023-05-16T22:13:04,738           # Package would be ignored #
2023-05-16T22:13:04,738           ############################
2023-05-16T22:13:04,738           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-05-16T22:13:04,738           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,738           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,738           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-05-16T22:13:04,738           to the `packages` configuration field.

2023-05-16T22:13:04,738           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,739           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,739           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,739           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,739           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,739           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-05-16T22:13:04,739           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-05-16T22:13:04,740           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,740           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,740           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,740           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,740           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,741           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,741                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,741                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,741                 directory, all directories are treated like packages.
2023-05-16T22:13:04,741           ********************************************************************************

2023-05-16T22:13:04,741   !!
2023-05-16T22:13:04,741     check.warn(importable)
2023-05-16T22:13:04,741   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-05-16T22:13:04,742   !!

2023-05-16T22:13:04,742           ********************************************************************************
2023-05-16T22:13:04,742           ############################
2023-05-16T22:13:04,742           # Package would be ignored #
2023-05-16T22:13:04,742           ############################
2023-05-16T22:13:04,742           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-05-16T22:13:04,742           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,743           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,743           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-05-16T22:13:04,743           to the `packages` configuration field.

2023-05-16T22:13:04,743           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,743           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,743           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,743           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,744           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,744           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-05-16T22:13:04,744           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-05-16T22:13:04,744           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,744           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,744           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,745           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,745           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,745           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,745                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,745                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,745                 directory, all directories are treated like packages.
2023-05-16T22:13:04,746           ********************************************************************************

2023-05-16T22:13:04,746   !!
2023-05-16T22:13:04,746     check.warn(importable)
2023-05-16T22:13:04,746   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-05-16T22:13:04,746   !!

2023-05-16T22:13:04,746           ********************************************************************************
2023-05-16T22:13:04,746           ############################
2023-05-16T22:13:04,746           # Package would be ignored #
2023-05-16T22:13:04,747           ############################
2023-05-16T22:13:04,747           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-05-16T22:13:04,747           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,747           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,747           package, please make sure that 'moleculekit.share' is explicitly added
2023-05-16T22:13:04,747           to the `packages` configuration field.

2023-05-16T22:13:04,747           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,748           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,748           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,748           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,748           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,748           If you don't want 'moleculekit.share' to be distributed and are
2023-05-16T22:13:04,748           already explicitly excluding 'moleculekit.share' via
2023-05-16T22:13:04,749           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,749           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,749           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,749           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,749           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,750           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,750                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,750                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,750                 directory, all directories are treated like packages.
2023-05-16T22:13:04,750           ********************************************************************************

2023-05-16T22:13:04,750   !!
2023-05-16T22:13:04,750     check.warn(importable)
2023-05-16T22:13:04,751   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-05-16T22:13:04,751   !!

2023-05-16T22:13:04,751           ********************************************************************************
2023-05-16T22:13:04,751           ############################
2023-05-16T22:13:04,751           # Package would be ignored #
2023-05-16T22:13:04,751           ############################
2023-05-16T22:13:04,752           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-05-16T22:13:04,752           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,752           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,752           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-05-16T22:13:04,752           to the `packages` configuration field.

2023-05-16T22:13:04,752           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,753           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,753           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,753           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,753           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,753           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-05-16T22:13:04,754           already explicitly excluding 'moleculekit.share.atomselect' via
2023-05-16T22:13:04,754           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,754           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,754           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,754           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,755           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,755           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,755                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,755                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,755                 directory, all directories are treated like packages.
2023-05-16T22:13:04,755           ********************************************************************************

2023-05-16T22:13:04,756   !!
2023-05-16T22:13:04,756     check.warn(importable)
2023-05-16T22:13:04,756   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-05-16T22:13:04,756   !!

2023-05-16T22:13:04,756           ********************************************************************************
2023-05-16T22:13:04,756           ############################
2023-05-16T22:13:04,757           # Package would be ignored #
2023-05-16T22:13:04,757           ############################
2023-05-16T22:13:04,757           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-05-16T22:13:04,757           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,757           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,757           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-05-16T22:13:04,757           to the `packages` configuration field.

2023-05-16T22:13:04,758           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,758           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,758           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,758           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,758           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,759           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-05-16T22:13:04,759           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-05-16T22:13:04,759           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,759           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,759           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,759           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,760           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,760           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,760                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,760                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,760                 directory, all directories are treated like packages.
2023-05-16T22:13:04,760           ********************************************************************************

2023-05-16T22:13:04,761   !!
2023-05-16T22:13:04,761     check.warn(importable)
2023-05-16T22:13:04,761   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-05-16T22:13:04,761   !!

2023-05-16T22:13:04,761           ********************************************************************************
2023-05-16T22:13:04,761           ############################
2023-05-16T22:13:04,761           # Package would be ignored #
2023-05-16T22:13:04,762           ############################
2023-05-16T22:13:04,762           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-05-16T22:13:04,762           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,762           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,762           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-05-16T22:13:04,762           to the `packages` configuration field.

2023-05-16T22:13:04,763           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,763           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,763           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,763           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,763           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,764           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-05-16T22:13:04,764           already explicitly excluding 'moleculekit.tmalign' via
2023-05-16T22:13:04,764           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,764           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,764           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,764           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,765           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,765           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,765                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,765                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,765                 directory, all directories are treated like packages.
2023-05-16T22:13:04,766           ********************************************************************************

2023-05-16T22:13:04,766   !!
2023-05-16T22:13:04,766     check.warn(importable)
2023-05-16T22:13:04,766   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-05-16T22:13:04,766   !!

2023-05-16T22:13:04,766           ********************************************************************************
2023-05-16T22:13:04,767           ############################
2023-05-16T22:13:04,767           # Package would be ignored #
2023-05-16T22:13:04,767           ############################
2023-05-16T22:13:04,767           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-05-16T22:13:04,767           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,767           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,768           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-05-16T22:13:04,768           to the `packages` configuration field.

2023-05-16T22:13:04,768           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,768           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,768           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,768           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,769           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,769           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-05-16T22:13:04,769           already explicitly excluding 'moleculekit.tmalign.include' via
2023-05-16T22:13:04,769           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,770           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,770           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,770           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,770           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,771           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,771                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,771                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,771                 directory, all directories are treated like packages.
2023-05-16T22:13:04,771           ********************************************************************************

2023-05-16T22:13:04,771   !!
2023-05-16T22:13:04,772     check.warn(importable)
2023-05-16T22:13:04,772   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-05-16T22:13:04,772   !!

2023-05-16T22:13:04,772           ********************************************************************************
2023-05-16T22:13:04,772           ############################
2023-05-16T22:13:04,772           # Package would be ignored #
2023-05-16T22:13:04,773           ############################
2023-05-16T22:13:04,773           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-05-16T22:13:04,773           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,773           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,773           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-05-16T22:13:04,773           to the `packages` configuration field.

2023-05-16T22:13:04,774           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,774           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,774           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,774           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,774           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,775           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-05-16T22:13:04,775           already explicitly excluding 'moleculekit.tmalign.src' via
2023-05-16T22:13:04,775           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,775           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,775           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,776           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,776           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,776           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,776                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,776                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,777                 directory, all directories are treated like packages.
2023-05-16T22:13:04,777           ********************************************************************************

2023-05-16T22:13:04,777   !!
2023-05-16T22:13:04,777     check.warn(importable)
2023-05-16T22:13:04,777   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-05-16T22:13:04,777   !!

2023-05-16T22:13:04,778           ********************************************************************************
2023-05-16T22:13:04,778           ############################
2023-05-16T22:13:04,778           # Package would be ignored #
2023-05-16T22:13:04,778           ############################
2023-05-16T22:13:04,778           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-05-16T22:13:04,778           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,779           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,779           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-05-16T22:13:04,779           to the `packages` configuration field.

2023-05-16T22:13:04,779           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,779           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,779           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,780           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,780           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,780           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-05-16T22:13:04,780           already explicitly excluding 'moleculekit.wrapping' via
2023-05-16T22:13:04,780           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,781           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,781           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,781           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,781           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,782           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,782                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,782                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,782                 directory, all directories are treated like packages.
2023-05-16T22:13:04,782           ********************************************************************************

2023-05-16T22:13:04,783   !!
2023-05-16T22:13:04,783     check.warn(importable)
2023-05-16T22:13:04,783   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-05-16T22:13:04,783   !!

2023-05-16T22:13:04,783           ********************************************************************************
2023-05-16T22:13:04,783           ############################
2023-05-16T22:13:04,783           # Package would be ignored #
2023-05-16T22:13:04,784           ############################
2023-05-16T22:13:04,784           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-05-16T22:13:04,784           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,784           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,784           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-05-16T22:13:04,784           to the `packages` configuration field.

2023-05-16T22:13:04,785           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,785           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,785           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,785           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,785           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,786           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-05-16T22:13:04,786           already explicitly excluding 'moleculekit.xtc_utils' via
2023-05-16T22:13:04,786           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,786           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,786           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,786           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,787           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,787           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,787                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,787                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,787                 directory, all directories are treated like packages.
2023-05-16T22:13:04,787           ********************************************************************************

2023-05-16T22:13:04,788   !!
2023-05-16T22:13:04,788     check.warn(importable)
2023-05-16T22:13:04,788   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-05-16T22:13:04,788   !!

2023-05-16T22:13:04,788           ********************************************************************************
2023-05-16T22:13:04,788           ############################
2023-05-16T22:13:04,789           # Package would be ignored #
2023-05-16T22:13:04,789           ############################
2023-05-16T22:13:04,789           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-05-16T22:13:04,789           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,789           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,789           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-05-16T22:13:04,790           to the `packages` configuration field.

2023-05-16T22:13:04,790           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,790           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,790           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,790           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,791           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,791           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-05-16T22:13:04,791           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-05-16T22:13:04,791           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,791           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,791           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,792           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,792           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,792           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,792                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,793                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,793                 directory, all directories are treated like packages.
2023-05-16T22:13:04,793           ********************************************************************************

2023-05-16T22:13:04,793   !!
2023-05-16T22:13:04,793     check.warn(importable)
2023-05-16T22:13:04,793   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-05-16T22:13:04,793   !!

2023-05-16T22:13:04,794           ********************************************************************************
2023-05-16T22:13:04,794           ############################
2023-05-16T22:13:04,794           # Package would be ignored #
2023-05-16T22:13:04,794           ############################
2023-05-16T22:13:04,794           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-05-16T22:13:04,794           but it is absent from setuptools' `packages` configuration.

2023-05-16T22:13:04,794           This leads to an ambiguous overall configuration. If you want to distribute this
2023-05-16T22:13:04,795           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-05-16T22:13:04,795           to the `packages` configuration field.

2023-05-16T22:13:04,795           Alternatively, you can also rely on setuptools' discovery methods
2023-05-16T22:13:04,795           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-05-16T22:13:04,795           instead of `find_packages(...)`/`find:`).

2023-05-16T22:13:04,795           You can read more about "package discovery" on setuptools documentation page:

2023-05-16T22:13:04,796           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-05-16T22:13:04,796           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-05-16T22:13:04,796           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-05-16T22:13:04,796           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-05-16T22:13:04,796           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-05-16T22:13:04,796           combination with a more fine grained `package-data` configuration.

2023-05-16T22:13:04,797           You can read more about "package data files" on setuptools documentation page:

2023-05-16T22:13:04,797           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-05-16T22:13:04,797           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-05-16T22:13:04,797                 even if it does not contain any `.py` files.
2023-05-16T22:13:04,798                 On the other hand, currently there is no concept of package data
2023-05-16T22:13:04,798                 directory, all directories are treated like packages.
2023-05-16T22:13:04,798           ********************************************************************************

2023-05-16T22:13:04,798   !!
2023-05-16T22:13:04,798     check.warn(importable)
2023-05-16T22:13:04,798   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,798   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:04,799   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-05-16T22:13:04,799   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-05-16T22:13:04,799   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-05-16T22:13:04,799   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-05-16T22:13:04,799   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-05-16T22:13:04,811   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-05-16T22:13:04,813   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-05-16T22:13:04,814   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-05-16T22:13:04,832   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-05-16T22:13:04,834   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-05-16T22:13:04,835   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-05-16T22:13:04,850   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-05-16T22:13:04,852   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-05-16T22:13:04,853   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-05-16T22:13:04,856   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-05-16T22:13:04,858   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-05-16T22:13:05,048   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-05-16T22:13:05,048   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-05-16T22:13:05,050   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-05-16T22:13:05,051   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,052   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,054   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,056   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,058   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,060   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,062   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,063   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,065   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,067   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,069   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,071   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,073   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,074   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,076   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,078   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,080   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,082   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,084   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,086   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,088   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,090   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,092   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,094   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,096   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,098   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,100   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,102   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,104   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,106   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,108   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,109   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,111   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,113   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,115   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,117   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,118   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,120   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,122   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,124   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,126   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,128   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,129   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,131   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,133   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,135   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,137   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,139   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,140   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,142   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,144   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,146   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,148   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,150   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,152   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,153   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,155   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,157   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,159   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,160   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,163   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,164   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,167   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,169   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,172   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,174   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,176   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,178   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,180   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,183   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,184   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,187   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,189   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,191   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,193   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,195   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,196   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,198   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,200   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,202   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,204   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,206   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,208   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,210   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,212   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,214   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,216   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,218   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,220   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,222   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,224   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,226   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,228   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,230   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,233   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,235   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,237   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,239   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,241   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,243   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,245   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,247   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,249   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,251   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,253   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,255   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,257   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,259   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,261   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,263   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,265   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,267   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,269   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,271   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,273   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,275   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,277   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,279   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,281   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,283   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,285   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,287   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,289   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,291   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,294   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,295   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,297   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,299   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,302   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,304   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,306   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,308   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,310   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,312   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,315   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,316   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,318   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,320   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,323   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,325   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,327   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,328   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,331   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,333   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,335   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,337   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,339   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,341   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,343   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,345   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,347   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,349   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,352   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,354   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,356   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,358   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,361   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,363   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,365   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,367   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,369   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,371   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,373   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,375   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,378   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,379   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,382   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,383   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,386   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,388   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,390   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,392   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,394   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,396   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,398   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,400   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-05-16T22:13:05,403   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T22:13:05,404   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T22:13:05,424   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T22:13:05,427   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T22:13:05,429   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-05-16T22:13:05,430   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-05-16T22:13:05,432   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-05-16T22:13:05,433   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-05-16T22:13:05,440   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-05-16T22:13:05,440   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-05-16T22:13:05,463   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-05-16T22:13:05,465   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T22:13:05,466   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T22:13:05,488   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T22:13:05,490   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T22:13:05,492   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-05-16T22:13:05,493   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-05-16T22:13:05,496   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-05-16T22:13:05,499   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-05-16T22:13:05,501   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T22:13:05,502   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T22:13:05,506   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T22:13:05,509   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T22:13:05,513   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-05-16T22:13:05,514   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-05-16T22:13:05,530   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-05-16T22:13:05,533   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-05-16T22:13:05,533   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-05-16T22:13:05,549   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-05-16T22:13:05,552   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-05-16T22:13:05,552   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-05-16T22:13:05,569   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-05-16T22:13:05,571   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-05-16T22:13:05,572   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-05-16T22:13:05,588   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-05-16T22:13:05,600   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-05-16T22:13:05,600   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.6.7'
2023-05-16T22:13:05,600   running build_ext
2023-05-16T22:13:05,611   building 'moleculekit.interactions.hbonds' extension
2023-05-16T22:13:05,612   creating build/temp.linux-armv7l-cpython-39
2023-05-16T22:13:05,613   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-05-16T22:13:05,614   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-05-16T22:13:05,615   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-05-16T22:13:05,616   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-05-16T22:13:05,917   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:13:05,918                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:13:05,918                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:13:05,918                    from moleculekit/interactions/hbonds/hbonds.cpp:786:
2023-05-16T22:13:05,918   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:13:05,918      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:13:05,918         |  ^~~~~~~
2023-05-16T22:13:24,859   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:13:25,172   building 'moleculekit.interactions.pipi' extension
2023-05-16T22:13:25,173   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-05-16T22:13:25,177   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-05-16T22:13:25,406   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:13:25,406                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:13:25,406                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:13:25,406                    from moleculekit/interactions/pipi/pipi.cpp:786:
2023-05-16T22:13:25,407   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:13:25,407      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:13:25,407         |  ^~~~~~~
2023-05-16T22:13:46,445   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:13:46,752   building 'moleculekit.interactions.cationpi' extension
2023-05-16T22:13:46,753   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-05-16T22:13:46,753   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-05-16T22:13:46,993   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:13:46,993                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:13:46,993                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:13:46,993                    from moleculekit/interactions/cationpi/cationpi.cpp:786:
2023-05-16T22:13:46,994   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:13:46,994      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:13:46,994         |  ^~~~~~~
2023-05-16T22:14:07,913   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:14:08,221   building 'moleculekit.interactions.sigmahole' extension
2023-05-16T22:14:08,222   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-05-16T22:14:08,223   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-05-16T22:14:08,479   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:14:08,479                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:14:08,479                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:14:08,479                    from moleculekit/interactions/sigmahole/sigmahole.cpp:786:
2023-05-16T22:14:08,480   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:14:08,480      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:14:08,480         |  ^~~~~~~
2023-05-16T22:14:29,121   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:14:29,446   building 'moleculekit.wrapping' extension
2023-05-16T22:14:29,447   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-05-16T22:14:29,447   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-05-16T22:14:29,680   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:14:29,681                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:14:29,681                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:14:29,681                    from moleculekit/wrapping/wrapping.cpp:786:
2023-05-16T22:14:29,681   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:14:29,682      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:14:29,682         |  ^~~~~~~
2023-05-16T22:14:47,521   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:14:47,753   building 'moleculekit.bondguesser_utils' extension
2023-05-16T22:14:47,754   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-05-16T22:14:47,755   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-05-16T22:14:47,980   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:14:47,980                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:14:47,980                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:14:47,980                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:786:
2023-05-16T22:14:47,980   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:14:47,980      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:14:47,981         |  ^~~~~~~
2023-05-16T22:14:49,134   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-05-16T22:14:49,134   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2962:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-05-16T22:14:49,135    2962 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-05-16T22:14:49,135         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-05-16T22:14:49,135   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2974:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-05-16T22:14:49,136    2974 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-05-16T22:14:49,136         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-05-16T22:14:49,136   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2986:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-05-16T22:14:49,136    2986 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-05-16T22:14:49,136         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-05-16T22:14:49,137   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3025:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,137    3025 |         __pyx_t_12 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T22:14:49,137         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,138   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3064:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,138    3064 |         __pyx_t_12 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T22:14:49,138         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,139   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3103:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,139    3103 |         __pyx_t_12 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,139         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,140   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3142:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,140    3142 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T22:14:49,140         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,141   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3148:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,141    3148 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T22:14:49,141         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,142   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3189:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,142    3189 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T22:14:49,142         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,143   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3195:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,143    3195 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,143         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,144   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3236:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,144    3236 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T22:14:49,144         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,145   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3242:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,145    3242 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,145         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,146   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3283:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,146    3283 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T22:14:49,146         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,147   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3336:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,147    3336 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,147         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,148   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3383:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,148    3383 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,149         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,149   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3424:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,150    3424 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T22:14:49,150         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,150   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3430:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,150    3430 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T22:14:49,150         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,151   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3436:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,151    3436 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,151         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,152   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3483:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,152    3483 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-05-16T22:14:49,152         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,153   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3489:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,153    3489 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,153         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,154   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3530:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,154    3530 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-05-16T22:14:49,154         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,155   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3542:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,155    3542 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,155         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,156   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3595:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-05-16T22:14:49,157    3595 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-05-16T22:14:49,157         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,183   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-05-16T22:14:49,183   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4144:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T22:14:49,183    4144 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_n_boxes) != 0);
2023-05-16T22:14:49,183         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-05-16T22:14:49,184   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4181:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T22:14:49,184    4181 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_boxidx) != 0);
2023-05-16T22:14:49,184         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-05-16T22:15:05,749   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:15:06,039   building 'moleculekit.atomselect_utils' extension
2023-05-16T22:15:06,040   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-05-16T22:15:06,041   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-05-16T22:15:06,269   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:15:06,270                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:15:06,270                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:15:06,270                    from moleculekit/atomselect_utils/atomselect_utils.cpp:786:
2023-05-16T22:15:06,270   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:15:06,270      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:15:06,270         |  ^~~~~~~
2023-05-16T22:15:09,190   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-05-16T22:15:09,190   moleculekit/atomselect_utils/atomselect_utils.cpp:5414:162: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T22:15:09,190    5414 |       __pyx_t_3 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum) != 0);
2023-05-16T22:15:09,190         |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-05-16T22:15:09,195   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-05-16T22:15:09,195   moleculekit/atomselect_utils/atomselect_utils.cpp:5668:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T22:15:09,195    5668 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2023-05-16T22:15:09,195         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T22:15:09,200   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-05-16T22:15:09,200   moleculekit/atomselect_utils/atomselect_utils.cpp:5934:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-05-16T22:15:09,200    5934 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2023-05-16T22:15:09,200         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T22:15:32,057   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:15:32,377   building 'moleculekit.distance_utils' extension
2023-05-16T22:15:32,378   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-05-16T22:15:32,379   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-05-16T22:15:32,606   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:15:32,606                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:15:32,607                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:15:32,607                    from moleculekit/distance_utils/distance_utils.cpp:786:
2023-05-16T22:15:32,607   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:15:32,607      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:15:32,607         |  ^~~~~~~
2023-05-16T22:15:55,527   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:15:55,843   building 'moleculekit.occupancy_utils' extension
2023-05-16T22:15:55,844   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-05-16T22:15:55,845   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-05-16T22:15:56,071   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:15:56,071                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:15:56,071                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:15:56,071                    from moleculekit/occupancy_utils/occupancy_utils.cpp:786:
2023-05-16T22:15:56,071   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:15:56,071      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:15:56,072         |  ^~~~~~~
2023-05-16T22:16:12,703   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:16:12,904   building 'moleculekit.xtc' extension
2023-05-16T22:16:12,904   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-05-16T22:16:12,905   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-05-16T22:16:12,906   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-05-16T22:16:13,142   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,143      66 |  "OK",
2023-05-16T22:16:13,143         |  ^~~~
2023-05-16T22:16:13,143   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,143      67 |  "Header",
2023-05-16T22:16:13,143         |  ^~~~~~~~
2023-05-16T22:16:13,143   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,144      68 |  "String",
2023-05-16T22:16:13,144         |  ^~~~~~~~
2023-05-16T22:16:13,144   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,144      69 |  "Double",
2023-05-16T22:16:13,144         |  ^~~~~~~~
2023-05-16T22:16:13,144   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,145      70 |  "Integer",
2023-05-16T22:16:13,145         |  ^~~~~~~~~
2023-05-16T22:16:13,145   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,145      71 |  "Float",
2023-05-16T22:16:13,145         |  ^~~~~~~
2023-05-16T22:16:13,145   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,145      72 |  "Unsigned integer",
2023-05-16T22:16:13,145         |  ^~~~~~~~~~~~~~~~~~
2023-05-16T22:16:13,146   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,146      73 |  "Compressed 3D coordinate",
2023-05-16T22:16:13,146         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:16:13,146   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,146      74 |  "Closing file",
2023-05-16T22:16:13,146         |  ^~~~~~~~~~~~~~
2023-05-16T22:16:13,147   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,147      75 |  "Magic number",
2023-05-16T22:16:13,147         |  ^~~~~~~~~~~~~~
2023-05-16T22:16:13,147   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,147      76 |  "Not enough memory",
2023-05-16T22:16:13,147         |  ^~~~~~~~~~~~~~~~~~~
2023-05-16T22:16:13,147   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,148      77 |  "End of file",
2023-05-16T22:16:13,148         |  ^~~~~~~~~~~~~
2023-05-16T22:16:13,148   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-05-16T22:16:13,148      78 |  "File not found"
2023-05-16T22:16:13,148         |  ^~~~~~~~~~~~~~~~
2023-05-16T22:16:13,152   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-05-16T22:16:13,152   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,152     459 |     while (size >= num && num_of_bits < 32)
2023-05-16T22:16:13,152         |            ~~~~~^~~~~~
2023-05-16T22:16:13,153   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-05-16T22:16:13,153   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,153     505 |     while (bytes[num_of_bytes] >= num)
2023-05-16T22:16:13,153         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-05-16T22:16:13,155   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-05-16T22:16:13,155   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,155     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-05-16T22:16:13,156         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-05-16T22:16:13,156   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,156     616 |   for (i = 0; i < num_of_bytes; i++)
2023-05-16T22:16:13,156         |               ~~^~~~~~~~~~~~~~
2023-05-16T22:16:13,156   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,156     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-05-16T22:16:13,157         |               ~~^~~~~~~~~~~~~~~~
2023-05-16T22:16:13,157   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-05-16T22:16:13,157   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,157     664 |   if (lastbits < num_of_bits)
2023-05-16T22:16:13,157         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-05-16T22:16:13,160   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-05-16T22:16:13,160   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,161     785 |  if(size3>xfp->buf1size)
2023-05-16T22:16:13,161         |     ~~~~~^~~~~~~~~~~~~~
2023-05-16T22:16:13,162   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,162     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-05-16T22:16:13,163         |                   ^
2023-05-16T22:16:13,165   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,165     932 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T22:16:13,165         |        ~~~~~~~~~^~~~~~~~
2023-05-16T22:16:13,165   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,165     935 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T22:16:13,166         |        ~~~~~~~~~^~~~~~~~
2023-05-16T22:16:13,166   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,166     938 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T22:16:13,166         |        ~~~~~~~~~^~~~~~~~
2023-05-16T22:16:13,166   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,166     945 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T22:16:13,166         |        ~~~~~~~~~^~~~~~~~
2023-05-16T22:16:13,167   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,167     948 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T22:16:13,167         |        ~~~~~~~~~^~~~~~~~
2023-05-16T22:16:13,167   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,167     951 |     if(countmjh >= size3 ) { return -1; }
2023-05-16T22:16:13,167         |        ~~~~~~~~~^~~~~~~~
2023-05-16T22:16:13,167   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-05-16T22:16:13,167     756 |  int smallidx,  minidx, maxidx;
2023-05-16T22:16:13,168         |                 ^~~~~~
2023-05-16T22:16:13,168   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-05-16T22:16:13,168     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-05-16T22:16:13,168         |                         ^~~~~~
2023-05-16T22:16:13,168   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-05-16T22:16:13,168     763 |  int errval=1;
2023-05-16T22:16:13,168         |      ^~~~~~
2023-05-16T22:16:13,169   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-05-16T22:16:13,169   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,169    1011 |  if(size3>xfp->buf1size)
2023-05-16T22:16:13,170         |     ~~~~~^~~~~~~~~~~~~~
2023-05-16T22:16:13,171   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,171    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-05-16T22:16:13,172         |                     ~~~~~~~~^~~~~~~
2023-05-16T22:16:13,172   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,172    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-05-16T22:16:13,172         |                    ~~~~~~~~^~~~~~~
2023-05-16T22:16:13,172   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,173    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-05-16T22:16:13,173         |                    ~~~~~~~~^~~~~~~
2023-05-16T22:16:13,174   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,174    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-05-16T22:16:13,174         |                  ^
2023-05-16T22:16:13,175   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,175    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-05-16T22:16:13,175         |                   ^
2023-05-16T22:16:13,178   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,178    1275 |  if(tmp==(unsigned int)buf2[0])
2023-05-16T22:16:13,179         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:16:13,179   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-05-16T22:16:13,179    1001 |  int errval;
2023-05-16T22:16:13,179         |      ^~~~~~
2023-05-16T22:16:13,181   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-05-16T22:16:13,182   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,182    1316 |  if(size3>xfp->buf1size)
2023-05-16T22:16:13,182         |     ~~~~~^~~~~~~~~~~~~~
2023-05-16T22:16:13,184   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,184    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-05-16T22:16:13,184         |                   ^
2023-05-16T22:16:13,186   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-05-16T22:16:13,187    1289 |  int smallidx,  maxidx, minidx;
2023-05-16T22:16:13,187         |                         ^~~~~~
2023-05-16T22:16:13,187   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-05-16T22:16:13,187    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-05-16T22:16:13,187         |                         ^~~~~~
2023-05-16T22:16:13,187   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-05-16T22:16:13,187    1297 |  int errval=1;
2023-05-16T22:16:13,187         |      ^~~~~~
2023-05-16T22:16:13,189   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-05-16T22:16:13,189   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,189    1513 |  if(size3>xfp->buf1size) {
2023-05-16T22:16:13,189         |     ~~~~~^~~~~~~~~~~~~~
2023-05-16T22:16:13,193   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,193    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-05-16T22:16:13,193         |                  ^
2023-05-16T22:16:13,194   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-05-16T22:16:13,194    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-05-16T22:16:13,194         |                   ^
2023-05-16T22:16:13,197   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-05-16T22:16:13,197    1743 |  if(tmp==(unsigned int)buf2[0])
2023-05-16T22:16:13,198         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-05-16T22:16:13,198   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-05-16T22:16:13,198    1504 |  int errval=1;
2023-05-16T22:16:13,198         |      ^~~~~~
2023-05-16T22:16:15,418   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-05-16T22:16:15,678   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-05-16T22:16:16,247   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-05-16T22:16:16,247   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-05-16T22:16:16,247     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-05-16T22:16:16,248         |      ^~~
2023-05-16T22:16:16,255   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-05-16T22:16:16,255   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-05-16T22:16:16,255     418 |  int nf3 = nframes * 3;
2023-05-16T22:16:16,255         |      ^~~
2023-05-16T22:16:16,260   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-05-16T22:16:16,260   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-05-16T22:16:16,260     491 |  int reading_index = 0;
2023-05-16T22:16:16,261         |      ^~~~~~~~~~~~~
2023-05-16T22:16:16,261   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-05-16T22:16:16,261     492 |  int writing_index = 0;
2023-05-16T22:16:16,261         |      ^~~~~~~~~~~~~
2023-05-16T22:16:17,016   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-05-16T22:16:17,246   In file included from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-16T22:16:17,246                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-16T22:16:17,246                    from /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-16T22:16:17,247                    from moleculekit/xtc_utils/xtc.cpp:788:
2023-05-16T22:16:17,247   /tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-16T22:16:17,247      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-16T22:16:17,247         |  ^~~~~~~
2023-05-16T22:16:32,054   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:16:32,370   building 'moleculekit.tmalign' extension
2023-05-16T22:16:32,370   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-05-16T22:16:32,371   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-05-16T22:16:32,373   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-05-16T22:17:01,829   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-crq7qglu/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-05-16T22:17:14,284   In file included from /usr/include/c++/10/vector:72,
2023-05-16T22:17:14,284                    from moleculekit/tmalign/tmalign_util.cpp:802:
2023-05-16T22:17:14,284   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-05-16T22:17:14,284   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-05-16T22:17:14,284     426 |       vector<_Tp, _Alloc>::
2023-05-16T22:17:14,285         |       ^~~~~~~~~~~~~~~~~~~
2023-05-16T22:17:14,779   In file included from /usr/include/c++/10/vector:67,
2023-05-16T22:17:14,780                    from moleculekit/tmalign/tmalign_util.cpp:802:
2023-05-16T22:17:14,780   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject*, PyObject*)’:
2023-05-16T22:17:14,780   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-05-16T22:17:14,780    1198 |    _M_realloc_insert(end(), __x);
2023-05-16T22:17:14,780         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T22:17:14,781   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-05-16T22:17:14,781    1198 |    _M_realloc_insert(end(), __x);
2023-05-16T22:17:14,781         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T22:17:14,781   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-05-16T22:17:14,782    1198 |    _M_realloc_insert(end(), __x);
2023-05-16T22:17:14,782         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-05-16T22:17:16,906   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-05-16T22:17:17,339   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-05-16T22:17:17,339   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.6.7'
2023-05-16T22:17:17,339   installing to build/bdist.linux-armv7l/wheel
2023-05-16T22:17:17,340   running install
2023-05-16T22:17:17,365   running install_lib
2023-05-16T22:17:17,371   creating build/bdist.linux-armv7l
2023-05-16T22:17:17,372   creating build/bdist.linux-armv7l/wheel
2023-05-16T22:17:17,374   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:17,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:17,391   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-05-16T22:17:17,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-05-16T22:17:17,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-05-16T22:17:17,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-05-16T22:17:17,403   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-05-16T22:17:17,404   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-05-16T22:17:17,409   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,414   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,432   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,436   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,440   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,445   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,447   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,449   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,460   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,463   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,467   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,478   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,495   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,506   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,647   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,657   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,662   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,666   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,669   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,683   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,688   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,712   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-05-16T22:17:17,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-05-16T22:17:17,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-05-16T22:17:17,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-05-16T22:17:17,921   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-05-16T22:17:17,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-05-16T22:17:17,924   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-05-16T22:17:17,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-05-16T22:17:17,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-05-16T22:17:17,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:17,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:17,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:17,950   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-05-16T22:17:17,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-05-16T22:17:17,953   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-05-16T22:17:17,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-05-16T22:17:17,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-05-16T22:17:17,957   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T22:17:17,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T22:17:17,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T22:17:17,963   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T22:17:17,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-05-16T22:17:17,967   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T22:17:17,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T22:17:17,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T22:17:17,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T22:17:17,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-05-16T22:17:17,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:17,977   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-05-16T22:17:17,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-05-16T22:17:17,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-05-16T22:17:17,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:17,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,024   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-05-16T22:17:18,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-05-16T22:17:18,044   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-05-16T22:17:18,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,049   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,097   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,123   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-05-16T22:17:18,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,134   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-05-16T22:17:18,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-05-16T22:17:18,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-05-16T22:17:18,138   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-05-16T22:17:18,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-05-16T22:17:18,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-05-16T22:17:18,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-05-16T22:17:18,145   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-05-16T22:17:18,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-05-16T22:17:18,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-05-16T22:17:18,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-05-16T22:17:18,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-05-16T22:17:18,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,178   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,200   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-05-16T22:17:18,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-05-16T22:17:18,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-05-16T22:17:18,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-05-16T22:17:18,214   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-05-16T22:17:18,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-05-16T22:17:18,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-05-16T22:17:18,238   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-05-16T22:17:18,241   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-05-16T22:17:18,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-05-16T22:17:18,244   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-05-16T22:17:18,245   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-05-16T22:17:18,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,293   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-05-16T22:17:18,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-05-16T22:17:18,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-05-16T22:17:18,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,346   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,363   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,380   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T22:17:18,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T22:17:18,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T22:17:18,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T22:17:18,389   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T22:17:18,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T22:17:18,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T22:17:18,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T22:17:18,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-05-16T22:17:18,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T22:17:18,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T22:17:18,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-05-16T22:17:18,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,407   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-05-16T22:17:18,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-05-16T22:17:18,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-05-16T22:17:18,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,442   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T22:17:18,443   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T22:17:18,445   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T22:17:18,447   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T22:17:18,449   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-05-16T22:17:18,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,453   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T22:17:18,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T22:17:18,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T22:17:18,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T22:17:18,503   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-05-16T22:17:18,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-05-16T22:17:18,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-05-16T22:17:18,523   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-05-16T22:17:18,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-05-16T22:17:18,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-05-16T22:17:18,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T22:17:18,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T22:17:18,570   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-05-16T22:17:18,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-05-16T22:17:18,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-05-16T22:17:18,589   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-05-16T22:17:18,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-05-16T22:17:18,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-05-16T22:17:18,607   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-05-16T22:17:18,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-05-16T22:17:18,628   running install_egg_info
2023-05-16T22:17:18,634   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.6.7-py3.9.egg-info
2023-05-16T22:17:18,646   running install_scripts
2023-05-16T22:17:18,693   creating build/bdist.linux-armv7l/wheel/moleculekit-1.6.7.dist-info/WHEEL
2023-05-16T22:17:18,696   creating '/tmp/pip-wheel-1bvcyfuc/.tmp-yxyjwf4_/moleculekit-1.6.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-05-16T22:17:18,699   adding 'moleculekit/__init__.py'
2023-05-16T22:17:18,700   adding 'moleculekit/_version.py'
2023-05-16T22:17:18,702   adding 'moleculekit/align.py'
2023-05-16T22:17:19,029   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:19,040   adding 'moleculekit/bondguesser.py'
2023-05-16T22:17:19,254   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:19,262   adding 'moleculekit/config.py'
2023-05-16T22:17:19,263   adding 'moleculekit/dihedral.py'
2023-05-16T22:17:19,530   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:19,539   adding 'moleculekit/home.py'
2023-05-16T22:17:19,541   adding 'moleculekit/logging.ini'
2023-05-16T22:17:19,554   adding 'moleculekit/molecule.py'
2023-05-16T22:17:19,754   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:19,762   adding 'moleculekit/opm.py'
2023-05-16T22:17:19,764   adding 'moleculekit/periodictable.py'
2023-05-16T22:17:19,765   adding 'moleculekit/pymolgraphics.py'
2023-05-16T22:17:19,766   adding 'moleculekit/rcsb.py'
2023-05-16T22:17:19,768   adding 'moleculekit/rdkitintegration.py'
2023-05-16T22:17:19,779   adding 'moleculekit/readers.py'
2023-05-16T22:17:20,359   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:20,383   adding 'moleculekit/util.py'
2023-05-16T22:17:20,384   adding 'moleculekit/version.py'
2023-05-16T22:17:20,385   adding 'moleculekit/viewer.py'
2023-05-16T22:17:20,387   adding 'moleculekit/vmd_wrapper'
2023-05-16T22:17:20,389   adding 'moleculekit/vmdgraphics.py'
2023-05-16T22:17:20,391   adding 'moleculekit/vmdviewer.py'
2023-05-16T22:17:20,597   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:20,608   adding 'moleculekit/writers.py'
2023-05-16T22:17:20,846   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:20,855   adding 'moleculekit/atomselect/__init__.py'
2023-05-16T22:17:20,857   adding 'moleculekit/atomselect/analyze.py'
2023-05-16T22:17:20,859   adding 'moleculekit/atomselect/atomselect.py'
2023-05-16T22:17:20,861   adding 'moleculekit/atomselect/languageparser.py'
2023-05-16T22:17:20,945   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-05-16T22:17:20,954   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-05-16T22:17:21,026   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-05-16T22:17:21,034   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-05-16T22:17:21,109   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-05-16T22:17:21,117   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-05-16T22:17:21,118   adding 'moleculekit/interactions/__init__.py'
2023-05-16T22:17:21,370   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:21,607   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:21,617   adding 'moleculekit/interactions/interactions.py'
2023-05-16T22:17:21,867   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:22,124   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-05-16T22:17:22,204   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-05-16T22:17:22,212   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-05-16T22:17:22,283   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-05-16T22:17:22,290   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-05-16T22:17:22,362   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-05-16T22:17:22,370   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-05-16T22:17:22,442   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-05-16T22:17:22,449   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-05-16T22:17:22,517   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-05-16T22:17:22,523   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-05-16T22:17:22,525   adding 'moleculekit/pdbx/__init__.py'
2023-05-16T22:17:22,529   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-05-16T22:17:22,531   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-05-16T22:17:22,534   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-05-16T22:17:22,535   adding 'moleculekit/pdbx/reader/__init__.py'
2023-05-16T22:17:22,537   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-05-16T22:17:22,538   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-05-16T22:17:22,540   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-05-16T22:17:22,541   adding 'moleculekit/pdbx/tests/__init__.py'
2023-05-16T22:17:22,543   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-05-16T22:17:22,544   adding 'moleculekit/pdbx/writer/__init__.py'
2023-05-16T22:17:22,546   adding 'moleculekit/ply/__init__.py'
2023-05-16T22:17:22,550   adding 'moleculekit/ply/lex.py'
2023-05-16T22:17:22,562   adding 'moleculekit/ply/yacc.py'
2023-05-16T22:17:22,564   adding 'moleculekit/projections/__init__.py'
2023-05-16T22:17:22,566   adding 'moleculekit/projections/metriccoordinate.py'
2023-05-16T22:17:22,569   adding 'moleculekit/projections/metricdihedral.py'
2023-05-16T22:17:22,573   adding 'moleculekit/projections/metricdistance.py'
2023-05-16T22:17:22,575   adding 'moleculekit/projections/metricfluctuation.py'
2023-05-16T22:17:22,577   adding 'moleculekit/projections/metricgyration.py'
2023-05-16T22:17:22,581   adding 'moleculekit/projections/metricplumed2.py'
2023-05-16T22:17:22,583   adding 'moleculekit/projections/metricrmsd.py'
2023-05-16T22:17:22,585   adding 'moleculekit/projections/metricsasa.py'
2023-05-16T22:17:22,587   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-05-16T22:17:22,588   adding 'moleculekit/projections/metricshell.py'
2023-05-16T22:17:22,590   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-05-16T22:17:22,591   adding 'moleculekit/projections/metrictmscore.py'
2023-05-16T22:17:22,593   adding 'moleculekit/projections/projection.py'
2023-05-16T22:17:22,594   adding 'moleculekit/projections/util.py'
2023-05-16T22:17:22,596   adding 'moleculekit/share/ALA.cif'
2023-05-16T22:17:22,597   adding 'moleculekit/share/backbone.cif'
2023-05-16T22:17:23,909   adding 'moleculekit/share/opm_sequences.json'
2023-05-16T22:17:23,994   adding 'moleculekit/share/atomselect/atomselect.json'
2023-05-16T22:17:23,998   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-05-16T22:17:24,000   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-05-16T22:17:24,001   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-05-16T22:17:24,002   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-05-16T22:17:24,003   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-05-16T22:17:24,004   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-05-16T22:17:24,006   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-05-16T22:17:24,007   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-05-16T22:17:24,008   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-05-16T22:17:24,009   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-05-16T22:17:24,011   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-05-16T22:17:24,012   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-05-16T22:17:24,013   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-05-16T22:17:24,014   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-05-16T22:17:24,016   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-05-16T22:17:24,017   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-05-16T22:17:24,018   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-05-16T22:17:24,019   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-05-16T22:17:24,020   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-05-16T22:17:24,022   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-05-16T22:17:24,023   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-05-16T22:17:24,024   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-05-16T22:17:24,025   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-05-16T22:17:24,027   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-05-16T22:17:24,028   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-05-16T22:17:24,029   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-05-16T22:17:24,030   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-05-16T22:17:24,031   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-05-16T22:17:24,033   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-05-16T22:17:24,034   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-05-16T22:17:24,035   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-05-16T22:17:24,036   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-05-16T22:17:24,037   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-05-16T22:17:24,038   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-05-16T22:17:24,040   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-05-16T22:17:24,041   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-05-16T22:17:24,042   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-05-16T22:17:24,043   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-05-16T22:17:24,045   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-05-16T22:17:24,046   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-05-16T22:17:24,047   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-05-16T22:17:24,048   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-05-16T22:17:24,049   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-05-16T22:17:24,051   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-05-16T22:17:24,052   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-05-16T22:17:24,053   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-05-16T22:17:24,054   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-05-16T22:17:24,056   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-05-16T22:17:24,057   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-05-16T22:17:24,058   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-05-16T22:17:24,059   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-05-16T22:17:24,061   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-05-16T22:17:24,062   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-05-16T22:17:24,063   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-05-16T22:17:24,064   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-05-16T22:17:24,066   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-05-16T22:17:24,067   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-05-16T22:17:24,068   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-05-16T22:17:24,069   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-05-16T22:17:24,070   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-05-16T22:17:24,072   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-05-16T22:17:24,073   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-05-16T22:17:24,074   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-05-16T22:17:24,075   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-05-16T22:17:24,076   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-05-16T22:17:24,078   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-05-16T22:17:24,079   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-05-16T22:17:24,080   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-05-16T22:17:24,081   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-05-16T22:17:24,082   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-05-16T22:17:24,084   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-05-16T22:17:24,085   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-05-16T22:17:24,086   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-05-16T22:17:24,087   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-05-16T22:17:24,088   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-05-16T22:17:24,090   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-05-16T22:17:24,091   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-05-16T22:17:24,092   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-05-16T22:17:24,093   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-05-16T22:17:24,094   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-05-16T22:17:24,096   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-05-16T22:17:24,097   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-05-16T22:17:24,098   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-05-16T22:17:24,099   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-05-16T22:17:24,101   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-05-16T22:17:24,102   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-05-16T22:17:24,103   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-05-16T22:17:24,104   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-05-16T22:17:24,105   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-05-16T22:17:24,107   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-05-16T22:17:24,108   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-05-16T22:17:24,109   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-05-16T22:17:24,110   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-05-16T22:17:24,112   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-05-16T22:17:24,113   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-05-16T22:17:24,114   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-05-16T22:17:24,116   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-05-16T22:17:24,117   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-05-16T22:17:24,118   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-05-16T22:17:24,119   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-05-16T22:17:24,120   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-05-16T22:17:24,122   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-05-16T22:17:24,123   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-05-16T22:17:24,124   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-05-16T22:17:24,125   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-05-16T22:17:24,126   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-05-16T22:17:24,128   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-05-16T22:17:24,129   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-05-16T22:17:24,130   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-05-16T22:17:24,131   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-05-16T22:17:24,133   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-05-16T22:17:24,134   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-05-16T22:17:24,135   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-05-16T22:17:24,136   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-05-16T22:17:24,137   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-05-16T22:17:24,138   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-05-16T22:17:24,140   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-05-16T22:17:24,141   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-05-16T22:17:24,142   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-05-16T22:17:24,143   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-05-16T22:17:24,145   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-05-16T22:17:24,146   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-05-16T22:17:24,147   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-05-16T22:17:24,148   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-05-16T22:17:24,149   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-05-16T22:17:24,150   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-05-16T22:17:24,152   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-05-16T22:17:24,153   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-05-16T22:17:24,154   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-05-16T22:17:24,155   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-05-16T22:17:24,156   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-05-16T22:17:24,158   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-05-16T22:17:24,159   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-05-16T22:17:24,160   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-05-16T22:17:24,161   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-05-16T22:17:24,162   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-05-16T22:17:24,164   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-05-16T22:17:24,165   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-05-16T22:17:24,166   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-05-16T22:17:24,167   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-05-16T22:17:24,168   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-05-16T22:17:24,169   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-05-16T22:17:24,171   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-05-16T22:17:24,172   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-05-16T22:17:24,173   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-05-16T22:17:24,174   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-05-16T22:17:24,175   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-05-16T22:17:24,177   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-05-16T22:17:24,178   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-05-16T22:17:24,179   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-05-16T22:17:24,180   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-05-16T22:17:24,181   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-05-16T22:17:24,183   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-05-16T22:17:24,184   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-05-16T22:17:24,185   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-05-16T22:17:24,186   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-05-16T22:17:24,188   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-05-16T22:17:24,189   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-05-16T22:17:24,190   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-05-16T22:17:24,191   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-05-16T22:17:24,193   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-05-16T22:17:24,194   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-05-16T22:17:24,195   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-05-16T22:17:24,196   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-05-16T22:17:24,197   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-05-16T22:17:24,198   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-05-16T22:17:24,200   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-05-16T22:17:24,201   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-05-16T22:17:24,202   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-05-16T22:17:24,203   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-05-16T22:17:24,204   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-05-16T22:17:24,206   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-05-16T22:17:24,207   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-05-16T22:17:24,208   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-05-16T22:17:24,209   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-05-16T22:17:24,211   adding 'moleculekit/smallmol/__init__.py'
2023-05-16T22:17:24,216   adding 'moleculekit/smallmol/smallmol.py'
2023-05-16T22:17:24,219   adding 'moleculekit/smallmol/smallmollib.py'
2023-05-16T22:17:24,220   adding 'moleculekit/smallmol/test_smallmol.py'
2023-05-16T22:17:24,222   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-05-16T22:17:24,224   adding 'moleculekit/smallmol/util.py'
2023-05-16T22:17:24,226   adding 'moleculekit/smallmol/tools/__init__.py'
2023-05-16T22:17:24,228   adding 'moleculekit/smallmol/tools/clustering.py'
2023-05-16T22:17:24,229   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-05-16T22:17:24,231   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-05-16T22:17:24,301   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-05-16T22:17:24,308   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-05-16T22:17:24,309   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-05-16T22:17:24,311   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-05-16T22:17:24,329   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-05-16T22:17:24,332   adding 'moleculekit/tools/__init__.py'
2023-05-16T22:17:24,334   adding 'moleculekit/tools/atomtyper.py'
2023-05-16T22:17:24,336   adding 'moleculekit/tools/autosegment.py'
2023-05-16T22:17:24,338   adding 'moleculekit/tools/crystalpacking.py'
2023-05-16T22:17:24,340   adding 'moleculekit/tools/detect.py'
2023-05-16T22:17:24,342   adding 'moleculekit/tools/docking.py'
2023-05-16T22:17:24,344   adding 'moleculekit/tools/graphalignment.py'
2023-05-16T22:17:24,346   adding 'moleculekit/tools/hhblitsprofile.py'
2023-05-16T22:17:24,347   adding 'moleculekit/tools/moleculechecks.py'
2023-05-16T22:17:24,353   adding 'moleculekit/tools/preparation.py'
2023-05-16T22:17:24,356   adding 'moleculekit/tools/preparation_customres.py'
2023-05-16T22:17:24,358   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-05-16T22:17:24,361   adding 'moleculekit/tools/voxeldescriptors.py'
2023-05-16T22:17:24,363   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-05-16T22:17:24,364   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-05-16T22:17:24,433   adding 'moleculekit/wrapping/wrapping.cpp'
2023-05-16T22:17:24,440   adding 'moleculekit/wrapping/wrapping.pyx'
2023-05-16T22:17:24,510   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-05-16T22:17:24,517   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-05-16T22:17:24,518   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-05-16T22:17:24,521   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-05-16T22:17:24,523   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-05-16T22:17:24,524   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-05-16T22:17:24,531   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-05-16T22:17:24,533   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-05-16T22:17:24,535   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-05-16T22:17:24,537   adding 'moleculekit-1.6.7.dist-info/LICENSE'
2023-05-16T22:17:24,539   adding 'moleculekit-1.6.7.dist-info/METADATA'
2023-05-16T22:17:24,540   adding 'moleculekit-1.6.7.dist-info/WHEEL'
2023-05-16T22:17:24,541   adding 'moleculekit-1.6.7.dist-info/top_level.txt'
2023-05-16T22:17:24,545   adding 'moleculekit-1.6.7.dist-info/RECORD'
2023-05-16T22:17:24,679   removing build/bdist.linux-armv7l/wheel
2023-05-16T22:17:24,966   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-05-16T22:17:25,212   Created wheel for moleculekit: filename=moleculekit-1.6.7-cp39-cp39-linux_armv7l.whl size=11488790 sha256=a9637e243ee23e24ef3fec895a61362c598d61fb3f0ca9a2cbd01ee417a3706c
2023-05-16T22:17:25,213   Stored in directory: /tmp/pip-ephem-wheel-cache-dnpvap87/wheels/d0/f5/4c/8f0c2fbd59fe0c299792ab6ab633c57d6af6e1e819c4d2238c
2023-05-16T22:17:25,237 Successfully built moleculekit
2023-05-16T22:17:25,512 Removed build tracker: '/tmp/pip-build-tracker-tn1o2ktw'