2023-05-18T10:47:44,357 Created temporary directory: /tmp/pip-build-tracker-tyf038zn
2023-05-18T10:47:44,359 Initialized build tracking at /tmp/pip-build-tracker-tyf038zn
2023-05-18T10:47:44,359 Created build tracker: /tmp/pip-build-tracker-tyf038zn
2023-05-18T10:47:44,359 Entered build tracker: /tmp/pip-build-tracker-tyf038zn
2023-05-18T10:47:44,360 Created temporary directory: /tmp/pip-wheel-txudmq8a
2023-05-18T10:47:44,363 Created temporary directory: /tmp/pip-ephem-wheel-cache-n72qjm5q
2023-05-18T10:47:44,389 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-18T10:47:44,392 2 location(s) to search for versions of forgi:
2023-05-18T10:47:44,392 * https://pypi.org/simple/forgi/
2023-05-18T10:47:44,392 * https://www.piwheels.org/simple/forgi/
2023-05-18T10:47:44,393 Fetching project page and analyzing links: https://pypi.org/simple/forgi/
2023-05-18T10:47:44,393 Getting page https://pypi.org/simple/forgi/
2023-05-18T10:47:44,395 Found index url https://pypi.org/simple/
2023-05-18T10:47:44,445 Fetched page https://pypi.org/simple/forgi/ as application/vnd.pypi.simple.v1+json
2023-05-18T10:47:44,449   Skipping link: unsupported archive format: .exe: https://files.pythonhosted.org/packages/66/40/1e40afc410037da78b10b08eb1f681c3c4d4514abf774f93f255b9746b90/forgi-0.1.linux-x86_64.exe (from https://pypi.org/simple/forgi/)
2023-05-18T10:47:44,450   Found link https://files.pythonhosted.org/packages/e7/1a/d38508a857d7ac4c4e75464529fa9834bbaf96078e62d6b93e831c86c0bb/forgi-0.1.tar.gz (from https://pypi.org/simple/forgi/), version: 0.1
2023-05-18T10:47:44,450   Skipping link: unsupported archive format: .exe: https://files.pythonhosted.org/packages/26/0f/024735a6e6d3077c5bfb5cfc2c398a66d293e4a6192ee88357edbeb66f09/forgi-0.20.linux-x86_64.exe (from https://pypi.org/simple/forgi/)
2023-05-18T10:47:44,450   Found link https://files.pythonhosted.org/packages/f8/47/5b68cdb14c10ff946b7b53d130dbf644cdcb8663aee0f4a7a467094fa8e9/forgi-0.20.tar.gz (from https://pypi.org/simple/forgi/), version: 0.20
2023-05-18T10:47:44,451   Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/e4/70/94d2e42b6a8f96fd38e57fe1d3cc05335ac2e7e3b6599223701321356e0e/forgi-1.0-py2.py3-none-any.whl (from https://pypi.org/simple/forgi/)
2023-05-18T10:47:44,451   Found link https://files.pythonhosted.org/packages/16/4e/a9b9cb9341a045b4febd75549314df78b7a09e801bdb835b10576b938b9d/forgi-1.0.tar.gz (from https://pypi.org/simple/forgi/), version: 1.0
2023-05-18T10:47:44,451   Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/86/f7/812cba6327ac40a33d986b7d698a6d2193e64e7dfcd570abc6b4f86aede5/forgi-1.1-py2.py3-none-any.whl (from https://pypi.org/simple/forgi/)
2023-05-18T10:47:44,451   Found link https://files.pythonhosted.org/packages/61/29/273df63c66c18e8909aff10f66e9406f598f656659894405b1ad10b20654/forgi-1.1.tar.gz (from https://pypi.org/simple/forgi/), version: 1.1
2023-05-18T10:47:44,452   Found link https://files.pythonhosted.org/packages/69/94/583f97307ee7c68d8b3844c2171dd13d79aa64d38a4f05e7847bd7d98e28/forgi-2.0.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.0.1
2023-05-18T10:47:44,452   Found link https://files.pythonhosted.org/packages/ea/95/2fdfc3636ce7957d2581ef9813cd49af123afd718c4bcb41486dadd5babc/forgi-2.0.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.0.2
2023-05-18T10:47:44,452   Found link https://files.pythonhosted.org/packages/61/6d/54b072d5cb0acb992b981772e33d7f7a0dca1f4e7bbc1e5c799fa0eb380d/forgi-2.1.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.1.1
2023-05-18T10:47:44,452   Found link https://files.pythonhosted.org/packages/bb/50/206944d64095dd07960398f5d350a00c96e7f29689c64ae559292ba7cd20/forgi-2.1.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.1.2
2023-05-18T10:47:44,453   Found link https://files.pythonhosted.org/packages/cd/d8/31485b259d48619ff38ea6aa48ac2e5a04bd069a41846f2bc5b6b3d8b740/forgi-2.2.0.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.0
2023-05-18T10:47:44,453   Found link https://files.pythonhosted.org/packages/6b/6c/0767b9c276049346a1d6cc262d0adc99cda5a9eef64b590840677adf08ad/forgi-2.2.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.1
2023-05-18T10:47:44,453   Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/41/96/74f23211eae17a7c2bd9b5683a4affa73e0197de09f081786c44839a3b86/forgi-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/)
2023-05-18T10:47:44,453   Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/c0/1f/80dfe394416cb3001586ef7f89203ea3e89ff4ecd27025927efeb6e52185/forgi-2.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/)
2023-05-18T10:47:44,454   Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/64/9e/ff9b8e397f4422341d493659e4fd298e257869eba6f42ef30b640f565c04/forgi-2.2.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/)
2023-05-18T10:47:44,454   Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/4d/87/785b11d57bf235cf35de5eae23b455a5281de184d08265a256a0c375bf39/forgi-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/)
2023-05-18T10:47:44,454   Found link https://files.pythonhosted.org/packages/15/04/70c9e02d6c1cdd4a645f890411cc9cc346945d3fd4297c51185a883e042e/forgi-2.2.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.2
2023-05-18T10:47:44,454 Fetching project page and analyzing links: https://www.piwheels.org/simple/forgi/
2023-05-18T10:47:44,455 Getting page https://www.piwheels.org/simple/forgi/
2023-05-18T10:47:44,456 Found index url https://www.piwheels.org/simple/
2023-05-18T10:47:44,632 Fetched page https://www.piwheels.org/simple/forgi/ as text/html
2023-05-18T10:47:44,640   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.2.2-cp37-cp37m-linux_armv7l.whl#sha256=4fd5cad6f7136b0688788fb72048f1db223ca322d71fd82290526b5e24638e90 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,640   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.2.2-cp37-cp37m-linux_armv6l.whl#sha256=4fd5cad6f7136b0688788fb72048f1db223ca322d71fd82290526b5e24638e90 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,640   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.2.1-cp37-cp37m-linux_armv7l.whl#sha256=e18b86582585f10c731579fb798ccdd9c07b446511f4285502befb39c9e03ab1 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,641   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.2.1-cp37-cp37m-linux_armv6l.whl#sha256=e18b86582585f10c731579fb798ccdd9c07b446511f4285502befb39c9e03ab1 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,641   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.2.0-cp37-cp37m-linux_armv7l.whl#sha256=ccd711cccc31d4e49f3d8d88cc5459d7c6c496890a1e651df48a024e1a9675ae (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,641   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.2.0-cp37-cp37m-linux_armv6l.whl#sha256=ccd711cccc31d4e49f3d8d88cc5459d7c6c496890a1e651df48a024e1a9675ae (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,641   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.1.2-cp39-cp39-linux_armv7l.whl#sha256=4d8967854ad1577550cea92b6474561726648c605f63ab598218f7ee1c21b1ee (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,641   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.1.2-cp39-cp39-linux_armv6l.whl#sha256=4d8967854ad1577550cea92b6474561726648c605f63ab598218f7ee1c21b1ee (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,642   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.1.2-cp37-cp37m-linux_armv7l.whl#sha256=09ed6e7a446e5f1d34b68e7af188265e09b6bd4d51dc84c7d0d190a08966fb79 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,642   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.1.2-cp37-cp37m-linux_armv6l.whl#sha256=09ed6e7a446e5f1d34b68e7af188265e09b6bd4d51dc84c7d0d190a08966fb79 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,642   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c2780f924bfbbbf78b23f481945f17f1232cf043138502c8a7242dd9c04310ba (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,642   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c2780f924bfbbbf78b23f481945f17f1232cf043138502c8a7242dd9c04310ba (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,642   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=d547df152ca5cc919761e6a071515f4e97830ffae817158ec9fa1399382d1761 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,643   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=d547df152ca5cc919761e6a071515f4e97830ffae817158ec9fa1399382d1761 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,643   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.2-cp37-cp37m-linux_armv7l.whl#sha256=f26a2514fd959f03f692bd823ce87ed95de9f2769ddb5386a39afb945d7c7b17 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,643   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.2-cp37-cp37m-linux_armv6l.whl#sha256=f26a2514fd959f03f692bd823ce87ed95de9f2769ddb5386a39afb945d7c7b17 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,643   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.2-cp35-cp35m-linux_armv7l.whl#sha256=c74109d24a39f8eddaffb0933304aefa113c6828a6955ab5db29715f91ea8611 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,643   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.2-cp35-cp35m-linux_armv6l.whl#sha256=c74109d24a39f8eddaffb0933304aefa113c6828a6955ab5db29715f91ea8611 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,644   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=e96b8376cebbb6f9a9b49d8d88a027e58f790aada95f37814c7cf8fab8f7a606 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,644   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=e96b8376cebbb6f9a9b49d8d88a027e58f790aada95f37814c7cf8fab8f7a606 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,644   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=5917ef47b38ba9bd489d8299f12812ea7a17d8f10783e0fe4c4f184a2bae3018 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,644   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=5917ef47b38ba9bd489d8299f12812ea7a17d8f10783e0fe4c4f184a2bae3018 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,644   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=261b20a637cc9b006dcb9866174c2d3c4cfa0f0375bd1aa38950c8ccd867dcdd (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,645   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=261b20a637cc9b006dcb9866174c2d3c4cfa0f0375bd1aa38950c8ccd867dcdd (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,645   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-1.1-py2.py3-none-any.whl#sha256=a13ed8456dad061d5c5f05609847f58aa713a49993e7923dceadb036dfb92f54 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,645   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-1.0-py2.py3-none-any.whl#sha256=d5f6c5bad4475c9a6820816e07d9c2bea6ee364c9f45ea6214cc55e18513e381 (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,645   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-0.20-py3-none-any.whl#sha256=fe868f38af84d0ed687e6344436930f427f9d154975e10cac9d5ff634a40d16a (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,645   Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-0.1-py3-none-any.whl#sha256=74cf37eb8412b8c4a6cc74b32257f5257d71148ad9051c4d9227b689036c1adf (from https://www.piwheels.org/simple/forgi/)
2023-05-18T10:47:44,646 Skipping link: not a file: https://www.piwheels.org/simple/forgi/
2023-05-18T10:47:44,646 Skipping link: not a file: https://pypi.org/simple/forgi/
2023-05-18T10:47:44,664 Given no hashes to check 1 links for project 'forgi': discarding no candidates
2023-05-18T10:47:44,681 Collecting forgi==2.2.2
2023-05-18T10:47:44,683   Created temporary directory: /tmp/pip-unpack-ru02bbba
2023-05-18T10:47:44,732   Downloading forgi-2.2.2.tar.gz (26.6 MB)
2023-05-18T10:47:50,300   Added forgi==2.2.2 from https://files.pythonhosted.org/packages/15/04/70c9e02d6c1cdd4a645f890411cc9cc346945d3fd4297c51185a883e042e/forgi-2.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-tyf038zn'
2023-05-18T10:47:50,302   Running setup.py (path:/tmp/pip-wheel-txudmq8a/forgi_a813d420666b4036ad1c33fa2cc02cd7/setup.py) egg_info for package forgi
2023-05-18T10:47:50,303   Created temporary directory: /tmp/pip-pip-egg-info-wgsf3qox
2023-05-18T10:47:50,303   Preparing metadata (setup.py): started
2023-05-18T10:47:50,304   Running command python setup.py egg_info
2023-05-18T10:47:50,953   fatal: not a git repository (or any of the parent directories): .git
2023-05-18T10:47:51,194   /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-05-18T10:47:51,194   !!

2023-05-18T10:47:51,195           ********************************************************************************
2023-05-18T10:47:51,195           Requirements should be satisfied by a PEP 517 installer.
2023-05-18T10:47:51,195           If you are using pip, you can try `pip install --use-pep517`.
2023-05-18T10:47:51,195           ********************************************************************************

2023-05-18T10:47:51,195   !!
2023-05-18T10:47:51,195     dist.fetch_build_eggs(dist.setup_requires)
2023-05-18T10:47:51,361   INFO:root:running egg_info
2023-05-18T10:47:51,363   INFO:root:creating /tmp/pip-pip-egg-info-wgsf3qox/forgi.egg-info
2023-05-18T10:47:51,388   INFO:root:writing /tmp/pip-pip-egg-info-wgsf3qox/forgi.egg-info/PKG-INFO
2023-05-18T10:47:51,390   INFO:root:writing dependency_links to /tmp/pip-pip-egg-info-wgsf3qox/forgi.egg-info/dependency_links.txt
2023-05-18T10:47:51,393   INFO:root:writing requirements to /tmp/pip-pip-egg-info-wgsf3qox/forgi.egg-info/requires.txt
2023-05-18T10:47:51,394   INFO:root:writing top-level names to /tmp/pip-pip-egg-info-wgsf3qox/forgi.egg-info/top_level.txt
2023-05-18T10:47:51,395   INFO:root:writing manifest file '/tmp/pip-pip-egg-info-wgsf3qox/forgi.egg-info/SOURCES.txt'
2023-05-18T10:47:51,489   INFO:root:reading manifest file '/tmp/pip-pip-egg-info-wgsf3qox/forgi.egg-info/SOURCES.txt'
2023-05-18T10:47:51,491   INFO:root:reading manifest template 'MANIFEST.in'
2023-05-18T10:47:51,511   INFO:root:adding license file 'LICENSE'
2023-05-18T10:47:51,511   INFO:root:adding license file 'CREDITS'
2023-05-18T10:47:51,517   INFO:root:writing manifest file '/tmp/pip-pip-egg-info-wgsf3qox/forgi.egg-info/SOURCES.txt'
2023-05-18T10:47:51,589   Preparing metadata (setup.py): finished with status 'done'
2023-05-18T10:47:51,594   Source in /tmp/pip-wheel-txudmq8a/forgi_a813d420666b4036ad1c33fa2cc02cd7 has version 2.2.2, which satisfies requirement forgi==2.2.2 from https://files.pythonhosted.org/packages/15/04/70c9e02d6c1cdd4a645f890411cc9cc346945d3fd4297c51185a883e042e/forgi-2.2.2.tar.gz
2023-05-18T10:47:51,595   Removed forgi==2.2.2 from https://files.pythonhosted.org/packages/15/04/70c9e02d6c1cdd4a645f890411cc9cc346945d3fd4297c51185a883e042e/forgi-2.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-tyf038zn'
2023-05-18T10:47:51,600 Created temporary directory: /tmp/pip-unpack-azxmr3am
2023-05-18T10:47:51,601 Building wheels for collected packages: forgi
2023-05-18T10:47:51,605   Created temporary directory: /tmp/pip-wheel-cp_wkv3l
2023-05-18T10:47:51,605   Building wheel for forgi (setup.py): started
2023-05-18T10:47:51,606   Destination directory: /tmp/pip-wheel-cp_wkv3l
2023-05-18T10:47:51,606   Running command python setup.py bdist_wheel
2023-05-18T10:47:52,199   fatal: not a git repository (or any of the parent directories): .git
2023-05-18T10:47:52,434   /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-05-18T10:47:52,434   !!

2023-05-18T10:47:52,435           ********************************************************************************
2023-05-18T10:47:52,435           Requirements should be satisfied by a PEP 517 installer.
2023-05-18T10:47:52,435           If you are using pip, you can try `pip install --use-pep517`.
2023-05-18T10:47:52,435           ********************************************************************************

2023-05-18T10:47:52,435   !!
2023-05-18T10:47:52,435     dist.fetch_build_eggs(dist.setup_requires)
2023-05-18T10:47:52,626   INFO:root:running bdist_wheel
2023-05-18T10:47:52,695   INFO:root:running build
2023-05-18T10:47:52,696   INFO:root:running build_py
2023-05-18T10:47:52,697   INFO:root:creating build
2023-05-18T10:47:52,698   INFO:root:creating build/lib.linux-armv7l-cpython-39
2023-05-18T10:47:52,698   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi
2023-05-18T10:47:52,700   INFO:root:copying forgi/whitelist.py -> build/lib.linux-armv7l-cpython-39/forgi
2023-05-18T10:47:52,701   INFO:root:copying forgi/config.py -> build/lib.linux-armv7l-cpython-39/forgi
2023-05-18T10:47:52,703   INFO:root:copying forgi/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi
2023-05-18T10:47:52,705   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,706   INFO:root:copying forgi/graph/bulge_graph.py -> build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,710   INFO:root:copying forgi/graph/sequence.py -> build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,713   INFO:root:copying forgi/graph/_cofold.py -> build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,715   INFO:root:copying forgi/graph/_basegraph.py -> build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,717   INFO:root:copying forgi/graph/transform_graphs.py -> build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,719   INFO:root:copying forgi/graph/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,720   INFO:root:copying forgi/graph/_graph_construction.py -> build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,722   INFO:root:copying forgi/graph/residue.py -> build/lib.linux-armv7l-cpython-39/forgi/graph
2023-05-18T10:47:52,725   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/threedee
2023-05-18T10:47:52,725   INFO:root:copying forgi/threedee/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee
2023-05-18T10:47:52,728   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,729   INFO:root:copying forgi/threedee/model/_ensemble2.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,731   INFO:root:copying forgi/threedee/model/_ensemble.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,734   INFO:root:copying forgi/threedee/model/coarse_grain.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,737   INFO:root:copying forgi/threedee/model/similarity.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,739   INFO:root:copying forgi/threedee/model/transform_cg.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,741   INFO:root:copying forgi/threedee/model/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,742   INFO:root:copying forgi/threedee/model/stats.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,745   INFO:root:copying forgi/threedee/model/descriptors.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,747   INFO:root:copying forgi/threedee/model/linecloud.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/model
2023-05-18T10:47:52,750   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,751   INFO:root:copying forgi/utilities/exceptions.py -> build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,752   INFO:root:copying forgi/utilities/commandline_utils.py -> build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,755   INFO:root:copying forgi/utilities/numbered_dotbracket.py -> build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,757   INFO:root:copying forgi/utilities/stuff.py -> build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,759   INFO:root:copying forgi/utilities/graph.py -> build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,761   INFO:root:copying forgi/utilities/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,762   INFO:root:copying forgi/utilities/debug.py -> build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,764   INFO:root:copying forgi/utilities/observedDict.py -> build/lib.linux-armv7l-cpython-39/forgi/utilities
2023-05-18T10:47:52,766   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,767   INFO:root:copying forgi/threedee/utilities/average_stem_vres_atom_positions.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,770   INFO:root:copying forgi/threedee/utilities/graph_pdb.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,773   INFO:root:copying forgi/threedee/utilities/vector.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,776   INFO:root:copying forgi/threedee/utilities/mcannotate.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,778   INFO:root:copying forgi/threedee/utilities/virtual_residues.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,780   INFO:root:copying forgi/threedee/utilities/pdb.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,782   INFO:root:copying forgi/threedee/utilities/modified_res.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,785   INFO:root:copying forgi/threedee/utilities/modified_res_lookup.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,788   INFO:root:copying forgi/threedee/utilities/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,790   INFO:root:copying forgi/threedee/utilities/_dssr.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,792   INFO:root:copying forgi/threedee/utilities/my_math.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:52,794   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/threedee/classification
2023-05-18T10:47:52,795   INFO:root:copying forgi/threedee/classification/aminor.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/classification
2023-05-18T10:47:52,797   INFO:root:copying forgi/threedee/classification/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/classification
2023-05-18T10:47:52,799   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training
2023-05-18T10:47:52,800   INFO:root:copying forgi/threedee/classification/_training/train_aminor.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training
2023-05-18T10:47:52,802   INFO:root:copying forgi/threedee/classification/_training/_parse_utils.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training
2023-05-18T10:47:52,804   INFO:root:copying forgi/threedee/classification/_training/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training
2023-05-18T10:47:52,806   INFO:root:copying forgi/threedee/classification/_training/aminor_training.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training
2023-05-18T10:47:52,809   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,810   INFO:root:copying forgi/_k2n_standalone/dict2d.py -> build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,812   INFO:root:copying forgi/_k2n_standalone/knotted2nested.py -> build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,815   INFO:root:copying forgi/_k2n_standalone/ct_simple.py -> build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,817   INFO:root:copying forgi/_k2n_standalone/bpseq.py -> build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,819   INFO:root:copying forgi/_k2n_standalone/rna2d.py -> build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,821   INFO:root:copying forgi/_k2n_standalone/knots.py -> build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,825   INFO:root:copying forgi/_k2n_standalone/output.py -> build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,826   INFO:root:copying forgi/_k2n_standalone/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone
2023-05-18T10:47:52,828   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/threedee/visual
2023-05-18T10:47:52,829   INFO:root:copying forgi/threedee/visual/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/visual
2023-05-18T10:47:52,830   INFO:root:copying forgi/threedee/visual/pymol.py -> build/lib.linux-armv7l-cpython-39/forgi/threedee/visual
2023-05-18T10:47:52,833   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/visual
2023-05-18T10:47:52,834   INFO:root:copying forgi/visual/mplotlib.py -> build/lib.linux-armv7l-cpython-39/forgi/visual
2023-05-18T10:47:52,837   INFO:root:copying forgi/visual/fornac.py -> build/lib.linux-armv7l-cpython-39/forgi/visual
2023-05-18T10:47:52,839   INFO:root:copying forgi/visual/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/visual
2023-05-18T10:47:52,841   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/projection
2023-05-18T10:47:52,841   INFO:root:copying forgi/projection/projection2d.py -> build/lib.linux-armv7l-cpython-39/forgi/projection
2023-05-18T10:47:52,844   INFO:root:copying forgi/projection/hausdorff.py -> build/lib.linux-armv7l-cpython-39/forgi/projection
2023-05-18T10:47:52,847   INFO:root:copying forgi/projection/__init__.py -> build/lib.linux-armv7l-cpython-39/forgi/projection
2023-05-18T10:47:52,854   INFO:root:creating build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,855   INFO:root:copying forgi/threedee/data/ideal_1_34_35_68.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,859   INFO:root:copying forgi/threedee/data/ideal_1_12_13_24.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,862   INFO:root:copying forgi/threedee/data/ideal_1_7_8_14.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,865   INFO:root:copying forgi/threedee/data/ideal_1_30_31_60.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,869   INFO:root:copying forgi/threedee/data/ideal_1_33_34_66.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,873   INFO:root:copying forgi/threedee/data/ideal_1_27_28_54.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,877   INFO:root:copying forgi/threedee/data/ideal_1_22_23_44.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,881   INFO:root:copying forgi/threedee/data/ideal_1_26_27_52.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,886   INFO:root:copying forgi/threedee/data/ideal_1_35_36_70.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,890   INFO:root:copying forgi/threedee/data/ideal_1_39_40_78.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,895   INFO:root:copying forgi/threedee/data/ideal_1_25_26_50.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,899   INFO:root:copying forgi/threedee/data/ideal_1_14_15_28.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,902   INFO:root:copying forgi/threedee/data/ideal_1_4_5_8.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,905   INFO:root:copying forgi/threedee/data/ideal_1_21_22_42.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,909   INFO:root:copying forgi/threedee/data/ideal_1_6_7_12.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,912   INFO:root:copying forgi/threedee/data/ideal_1_31_32_62.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,916   INFO:root:copying forgi/threedee/data/ideal_1_40_41_80.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,921   INFO:root:copying forgi/threedee/data/ideal_1_13_14_26.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,925   INFO:root:copying forgi/threedee/data/ideal_1_29_30_58.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,929   INFO:root:copying forgi/threedee/data/ideal_1_1_2_2.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,931   INFO:root:copying forgi/threedee/data/ideal_1_36_37_72.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,936   INFO:root:copying forgi/threedee/data/ideal_1_9_10_18.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,939   INFO:root:copying forgi/threedee/data/ideal_1_11_12_22.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,942   INFO:root:copying forgi/threedee/data/ideal_1_37_38_74.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,946   INFO:root:copying forgi/threedee/data/ideal_1_38_39_76.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,951   INFO:root:copying forgi/threedee/data/ideal_1_20_21_40.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,955   INFO:root:copying forgi/threedee/data/ideal_1_5_6_10.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,958   INFO:root:copying forgi/threedee/data/ideal_1_2_3_4.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,961   INFO:root:copying forgi/threedee/data/ideal_1_16_17_32.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,965   INFO:root:copying forgi/threedee/data/ideal_1_23_24_46.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,969   INFO:root:copying forgi/threedee/data/ideal_1_15_16_30.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,973   INFO:root:copying forgi/threedee/data/ideal_1_24_25_48.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,978   INFO:root:copying forgi/threedee/data/ideal_1_28_29_56.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,982   INFO:root:copying forgi/threedee/data/ideal_1_19_20_38.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,986   INFO:root:copying forgi/threedee/data/ideal_1_18_19_36.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,990   INFO:root:copying forgi/threedee/data/ideal_1_10_11_20.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,993   INFO:root:copying forgi/threedee/data/ideal_1_17_18_34.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:52,997   INFO:root:copying forgi/threedee/data/ideal_1_3_4_6.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:53,000   INFO:root:copying forgi/threedee/data/ideal_1_8_9_16.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:53,003   INFO:root:copying forgi/threedee/data/ideal_1_32_33_64.pdb -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:53,008   INFO:root:copying forgi/threedee/data/average_atom_positions.json -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:53,998   INFO:root:copying forgi/threedee/data/aminor_geometries.csv -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:54,332   INFO:root:copying forgi/threedee/data/aminor_params.json -> build/lib.linux-armv7l-cpython-39/forgi/threedee/data
2023-05-18T10:47:54,341   INFO:root:running build_ext
2023-05-18T10:47:54,705   INFO:root:cythoning forgi/threedee/utilities/cytvec.pyx to forgi/threedee/utilities/cytvec.cpp
2023-05-18T10:47:55,382   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-txudmq8a/forgi_a813d420666b4036ad1c33fa2cc02cd7/forgi/threedee/utilities/cytvec.pyx
2023-05-18T10:47:55,382     tree = Parsing.p_module(s, pxd, full_module_name)
2023-05-18T10:47:59,575   INFO:root:building 'forgi.threedee.utilities.cytvec' extension
2023-05-18T10:47:59,576   INFO:root:creating build/temp.linux-armv7l-cpython-39
2023-05-18T10:47:59,577   INFO:root:creating build/temp.linux-armv7l-cpython-39/forgi
2023-05-18T10:47:59,578   INFO:root:creating build/temp.linux-armv7l-cpython-39/forgi/threedee
2023-05-18T10:47:59,579   INFO:root:creating build/temp.linux-armv7l-cpython-39/forgi/threedee/utilities
2023-05-18T10:47:59,580   INFO:root:arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c forgi/threedee/utilities/broken_ml_core.cpp -o build/temp.linux-armv7l-cpython-39/forgi/threedee/utilities/broken_ml_core.o -O3 -std=c++11
2023-05-18T10:48:01,174   INFO:root:arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c forgi/threedee/utilities/cytvec.cpp -o build/temp.linux-armv7l-cpython-39/forgi/threedee/utilities/cytvec.o -O3 -std=c++11
2023-05-18T10:48:01,409   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-05-18T10:48:01,409                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-05-18T10:48:01,409                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-05-18T10:48:01,409                    from forgi/threedee/utilities/cytvec.cpp:760:
2023-05-18T10:48:01,409   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-05-18T10:48:01,410      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-05-18T10:48:01,410         |  ^~~~~~~
2023-05-18T10:48:25,042   INFO:root:arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/forgi/threedee/utilities/broken_ml_core.o build/temp.linux-armv7l-cpython-39/forgi/threedee/utilities/cytvec.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/cytvec.cpython-39-arm-linux-gnueabihf.so
2023-05-18T10:48:25,364   INFO:root:running build_scripts
2023-05-18T10:48:25,365   INFO:root:creating build/scripts-3.9
2023-05-18T10:48:25,366   INFO:root:copying and adjusting examples/rnaConvert.py -> build/scripts-3.9
2023-05-18T10:48:25,369   INFO:root:copying and adjusting examples/describe_cg.py -> build/scripts-3.9
2023-05-18T10:48:25,371   INFO:root:copying and adjusting examples/compare_RNA.py -> build/scripts-3.9
2023-05-18T10:48:25,374   INFO:root:copying and adjusting examples/visualize_rna.py -> build/scripts-3.9
2023-05-18T10:48:25,376   INFO:root:copying and adjusting examples/pseudoknot_analyzer.py -> build/scripts-3.9
2023-05-18T10:48:25,379   INFO:root:copying and adjusting examples/forgi_config.py -> build/scripts-3.9
2023-05-18T10:48:25,380   INFO:root:changing mode of build/scripts-3.9/rnaConvert.py from 644 to 755
2023-05-18T10:48:25,381   INFO:root:changing mode of build/scripts-3.9/describe_cg.py from 644 to 755
2023-05-18T10:48:25,381   INFO:root:changing mode of build/scripts-3.9/compare_RNA.py from 644 to 755
2023-05-18T10:48:25,381   INFO:root:changing mode of build/scripts-3.9/visualize_rna.py from 644 to 755
2023-05-18T10:48:25,382   INFO:root:changing mode of build/scripts-3.9/pseudoknot_analyzer.py from 644 to 755
2023-05-18T10:48:25,382   INFO:root:changing mode of build/scripts-3.9/forgi_config.py from 644 to 755
2023-05-18T10:48:25,415   /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-05-18T10:48:25,415   !!

2023-05-18T10:48:25,415           ********************************************************************************
2023-05-18T10:48:25,416           Please avoid running ``setup.py`` directly.
2023-05-18T10:48:25,416           Instead, use pypa/build, pypa/installer, pypa/build or
2023-05-18T10:48:25,416           other standards-based tools.

2023-05-18T10:48:25,416           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-05-18T10:48:25,416           ********************************************************************************

2023-05-18T10:48:25,417   !!
2023-05-18T10:48:25,417     self.initialize_options()
2023-05-18T10:48:25,440   INFO:root:installing to build/bdist.linux-armv7l/wheel
2023-05-18T10:48:25,440   INFO:root:running install
2023-05-18T10:48:25,466   INFO:root:running install_lib
2023-05-18T10:48:25,492   INFO:root:creating build/bdist.linux-armv7l
2023-05-18T10:48:25,492   INFO:root:creating build/bdist.linux-armv7l/wheel
2023-05-18T10:48:25,494   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi
2023-05-18T10:48:25,495   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,496   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/utilities/exceptions.py -> build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,498   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/utilities/commandline_utils.py -> build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,500   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/utilities/numbered_dotbracket.py -> build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,502   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/utilities/stuff.py -> build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,505   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/utilities/graph.py -> build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,508   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,509   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/utilities/debug.py -> build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,511   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/utilities/observedDict.py -> build/bdist.linux-armv7l/wheel/forgi/utilities
2023-05-18T10:48:25,513   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/projection
2023-05-18T10:48:25,514   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/projection/projection2d.py -> build/bdist.linux-armv7l/wheel/forgi/projection
2023-05-18T10:48:25,517   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/projection/hausdorff.py -> build/bdist.linux-armv7l/wheel/forgi/projection
2023-05-18T10:48:25,519   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/projection/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/projection
2023-05-18T10:48:25,521   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/whitelist.py -> build/bdist.linux-armv7l/wheel/forgi
2023-05-18T10:48:25,522   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/config.py -> build/bdist.linux-armv7l/wheel/forgi
2023-05-18T10:48:25,524   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee
2023-05-18T10:48:25,526   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,526   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/average_stem_vres_atom_positions.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,529   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/graph_pdb.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,532   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/vector.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,535   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/cytvec.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,566   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/mcannotate.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,568   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/virtual_residues.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,570   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/pdb.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,573   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/modified_res.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,575   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/modified_res_lookup.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,578   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,579   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/_dssr.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,582   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/utilities/my_math.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/utilities
2023-05-18T10:48:25,584   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/classification
2023-05-18T10:48:25,585   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/aminor.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/classification
2023-05-18T10:48:25,587   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/classification/_training
2023-05-18T10:48:25,588   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training/train_aminor.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/classification/_training
2023-05-18T10:48:25,590   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training/_parse_utils.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/classification/_training
2023-05-18T10:48:25,592   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/classification/_training
2023-05-18T10:48:25,595   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/_training/aminor_training.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/classification/_training
2023-05-18T10:48:25,597   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/classification/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/classification
2023-05-18T10:48:25,601   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,602   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_34_35_68.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,606   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_12_13_24.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,610   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_7_8_14.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,613   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_30_31_60.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,618   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_33_34_66.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,622   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_27_28_54.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,626   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_22_23_44.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,630   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_26_27_52.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,634   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_35_36_70.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,639   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_39_40_78.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,645   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_25_26_50.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,649   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_14_15_28.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,652   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_4_5_8.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,654   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_21_22_42.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,658   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_6_7_12.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,660   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_31_32_62.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,664   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_40_41_80.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,670   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_13_14_26.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,672   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_29_30_58.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,677   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_1_2_2.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,678   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_36_37_72.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,683   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_9_10_18.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,686   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_11_12_22.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,689   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_37_38_74.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,693   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_38_39_76.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,697   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_20_21_40.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,700   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_5_6_10.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,702   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_2_3_4.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,704   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_16_17_32.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:25,707   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/aminor_geometries.csv -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,037   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_23_24_46.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,041   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_15_16_30.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,044   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_24_25_48.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,048   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_28_29_56.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,052   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_19_20_38.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,056   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_18_19_36.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,059   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_10_11_20.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,062   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/aminor_params.json -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,064   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_17_18_34.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:26,067   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/average_atom_positions.json -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:27,827   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_3_4_6.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:27,829   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_8_9_16.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:27,832   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/data/ideal_1_32_33_64.pdb -> build/bdist.linux-armv7l/wheel/forgi/threedee/data
2023-05-18T10:48:27,836   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/visual
2023-05-18T10:48:27,837   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/visual/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/visual
2023-05-18T10:48:27,838   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/visual/pymol.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/visual
2023-05-18T10:48:27,841   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/threedee
2023-05-18T10:48:27,843   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,844   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/_ensemble2.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,847   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/_ensemble.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,850   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/coarse_grain.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,853   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/similarity.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,855   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/transform_cg.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,857   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,859   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/stats.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,862   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/descriptors.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,864   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/threedee/model/linecloud.py -> build/bdist.linux-armv7l/wheel/forgi/threedee/model
2023-05-18T10:48:27,867   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,868   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/graph/bulge_graph.py -> build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,872   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/graph/sequence.py -> build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,876   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/graph/_cofold.py -> build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,878   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/graph/_basegraph.py -> build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,881   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/graph/transform_graphs.py -> build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,883   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/graph/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,885   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/graph/_graph_construction.py -> build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,888   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/graph/residue.py -> build/bdist.linux-armv7l/wheel/forgi/graph
2023-05-18T10:48:27,890   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/visual
2023-05-18T10:48:27,891   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/visual/mplotlib.py -> build/bdist.linux-armv7l/wheel/forgi/visual
2023-05-18T10:48:27,894   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/visual/fornac.py -> build/bdist.linux-armv7l/wheel/forgi/visual
2023-05-18T10:48:27,896   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/visual/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/visual
2023-05-18T10:48:27,898   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/__init__.py -> build/bdist.linux-armv7l/wheel/forgi
2023-05-18T10:48:27,900   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,901   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone/dict2d.py -> build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,904   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone/knotted2nested.py -> build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,906   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone/ct_simple.py -> build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,909   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone/bpseq.py -> build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,911   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone/rna2d.py -> build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,914   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone/knots.py -> build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,917   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone/output.py -> build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,919   INFO:root:copying build/lib.linux-armv7l-cpython-39/forgi/_k2n_standalone/__init__.py -> build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone
2023-05-18T10:48:27,921   INFO:root:running install_data
2023-05-18T10:48:27,945   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi-2.2.2.data
2023-05-18T10:48:27,945   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/data
2023-05-18T10:48:27,947   INFO:root:copying CREDITS -> build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/data/
2023-05-18T10:48:27,949   INFO:root:copying LICENSE -> build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/data/
2023-05-18T10:48:27,952   INFO:root:running install_egg_info
2023-05-18T10:48:28,000   INFO:root:running egg_info
2023-05-18T10:48:28,022   INFO:root:writing forgi.egg-info/PKG-INFO
2023-05-18T10:48:28,025   INFO:root:writing dependency_links to forgi.egg-info/dependency_links.txt
2023-05-18T10:48:28,027   INFO:root:writing requirements to forgi.egg-info/requires.txt
2023-05-18T10:48:28,028   INFO:root:writing top-level names to forgi.egg-info/top_level.txt
2023-05-18T10:48:28,077   INFO:root:reading manifest file 'forgi.egg-info/SOURCES.txt'
2023-05-18T10:48:28,083   INFO:root:reading manifest template 'MANIFEST.in'
2023-05-18T10:48:28,138   INFO:root:adding license file 'LICENSE'
2023-05-18T10:48:28,138   INFO:root:adding license file 'CREDITS'
2023-05-18T10:48:28,146   INFO:root:writing manifest file 'forgi.egg-info/SOURCES.txt'
2023-05-18T10:48:28,148   INFO:root:Copying forgi.egg-info to build/bdist.linux-armv7l/wheel/forgi-2.2.2-py3.9.egg-info
2023-05-18T10:48:28,160   INFO:root:running install_scripts
2023-05-18T10:48:28,161   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts
2023-05-18T10:48:28,162   INFO:root:copying build/scripts-3.9/forgi_config.py -> build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts
2023-05-18T10:48:28,164   INFO:root:copying build/scripts-3.9/pseudoknot_analyzer.py -> build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts
2023-05-18T10:48:28,167   INFO:root:copying build/scripts-3.9/describe_cg.py -> build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts
2023-05-18T10:48:28,169   INFO:root:copying build/scripts-3.9/rnaConvert.py -> build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts
2023-05-18T10:48:28,172   INFO:root:copying build/scripts-3.9/compare_RNA.py -> build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts
2023-05-18T10:48:28,174   INFO:root:copying build/scripts-3.9/visualize_rna.py -> build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts
2023-05-18T10:48:28,176   INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts/forgi_config.py to 755
2023-05-18T10:48:28,177   INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts/pseudoknot_analyzer.py to 755
2023-05-18T10:48:28,177   INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts/describe_cg.py to 755
2023-05-18T10:48:28,177   INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts/rnaConvert.py to 755
2023-05-18T10:48:28,177   INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts/compare_RNA.py to 755
2023-05-18T10:48:28,178   INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.2.2.data/scripts/visualize_rna.py to 755
2023-05-18T10:48:28,200   INFO:root:adding license file "CREDITS" (matched pattern "CREDITS")
2023-05-18T10:48:28,200   INFO:root:adding license file "LICENSE" (matched pattern "LICENSE")
2023-05-18T10:48:28,205   INFO:root:creating build/bdist.linux-armv7l/wheel/forgi-2.2.2.dist-info/WHEEL
2023-05-18T10:48:28,208   INFO:root:creating '/tmp/pip-wheel-cp_wkv3l/forgi-2.2.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-05-18T10:48:28,210   INFO:root:adding 'forgi/__init__.py'
2023-05-18T10:48:28,211   INFO:root:adding 'forgi/config.py'
2023-05-18T10:48:28,212   INFO:root:adding 'forgi/whitelist.py'
2023-05-18T10:48:28,213   INFO:root:adding 'forgi/_k2n_standalone/__init__.py'
2023-05-18T10:48:28,215   INFO:root:adding 'forgi/_k2n_standalone/bpseq.py'
2023-05-18T10:48:28,217   INFO:root:adding 'forgi/_k2n_standalone/ct_simple.py'
2023-05-18T10:48:28,221   INFO:root:adding 'forgi/_k2n_standalone/dict2d.py'
2023-05-18T10:48:28,230   INFO:root:adding 'forgi/_k2n_standalone/knots.py'
2023-05-18T10:48:28,232   INFO:root:adding 'forgi/_k2n_standalone/knotted2nested.py'
2023-05-18T10:48:28,234   INFO:root:adding 'forgi/_k2n_standalone/output.py'
2023-05-18T10:48:28,236   INFO:root:adding 'forgi/_k2n_standalone/rna2d.py'
2023-05-18T10:48:28,238   INFO:root:adding 'forgi/graph/__init__.py'
2023-05-18T10:48:28,239   INFO:root:adding 'forgi/graph/_basegraph.py'
2023-05-18T10:48:28,241   INFO:root:adding 'forgi/graph/_cofold.py'
2023-05-18T10:48:28,244   INFO:root:adding 'forgi/graph/_graph_construction.py'
2023-05-18T10:48:28,256   INFO:root:adding 'forgi/graph/bulge_graph.py'
2023-05-18T10:48:28,258   INFO:root:adding 'forgi/graph/residue.py'
2023-05-18T10:48:28,262   INFO:root:adding 'forgi/graph/sequence.py'
2023-05-18T10:48:28,264   INFO:root:adding 'forgi/graph/transform_graphs.py'
2023-05-18T10:48:28,266   INFO:root:adding 'forgi/projection/__init__.py'
2023-05-18T10:48:28,269   INFO:root:adding 'forgi/projection/hausdorff.py'
2023-05-18T10:48:28,275   INFO:root:adding 'forgi/projection/projection2d.py'
2023-05-18T10:48:28,277   INFO:root:adding 'forgi/threedee/__init__.py'
2023-05-18T10:48:28,278   INFO:root:adding 'forgi/threedee/classification/__init__.py'
2023-05-18T10:48:28,281   INFO:root:adding 'forgi/threedee/classification/aminor.py'
2023-05-18T10:48:28,283   INFO:root:adding 'forgi/threedee/classification/_training/__init__.py'
2023-05-18T10:48:28,284   INFO:root:adding 'forgi/threedee/classification/_training/_parse_utils.py'
2023-05-18T10:48:28,287   INFO:root:adding 'forgi/threedee/classification/_training/aminor_training.py'
2023-05-18T10:48:28,288   INFO:root:adding 'forgi/threedee/classification/_training/train_aminor.py'
2023-05-18T10:48:31,853   INFO:root:adding 'forgi/threedee/data/aminor_geometries.csv'
2023-05-18T10:48:31,996   INFO:root:adding 'forgi/threedee/data/aminor_params.json'
2023-05-18T10:48:39,528   INFO:root:adding 'forgi/threedee/data/average_atom_positions.json'
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2023-05-18T10:48:40,434   INFO:root:adding 'forgi/threedee/model/__init__.py'
2023-05-18T10:48:40,437   INFO:root:adding 'forgi/threedee/model/_ensemble.py'
2023-05-18T10:48:40,443   INFO:root:adding 'forgi/threedee/model/_ensemble2.py'
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2023-05-18T10:48:40,455   INFO:root:adding 'forgi/threedee/model/descriptors.py'
2023-05-18T10:48:40,457   INFO:root:adding 'forgi/threedee/model/linecloud.py'
2023-05-18T10:48:40,460   INFO:root:adding 'forgi/threedee/model/similarity.py'
2023-05-18T10:48:40,463   INFO:root:adding 'forgi/threedee/model/stats.py'
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2023-05-18T10:48:40,754   INFO:root:adding 'forgi/threedee/utilities/cytvec.cpython-39-arm-linux-gnueabihf.so'
2023-05-18T10:48:40,772   INFO:root:adding 'forgi/threedee/utilities/graph_pdb.py'
2023-05-18T10:48:40,774   INFO:root:adding 'forgi/threedee/utilities/mcannotate.py'
2023-05-18T10:48:40,776   INFO:root:adding 'forgi/threedee/utilities/modified_res.py'
2023-05-18T10:48:40,781   INFO:root:adding 'forgi/threedee/utilities/modified_res_lookup.py'
2023-05-18T10:48:40,783   INFO:root:adding 'forgi/threedee/utilities/my_math.py'
2023-05-18T10:48:40,789   INFO:root:adding 'forgi/threedee/utilities/pdb.py'
2023-05-18T10:48:40,794   INFO:root:adding 'forgi/threedee/utilities/vector.py'
2023-05-18T10:48:40,796   INFO:root:adding 'forgi/threedee/utilities/virtual_residues.py'
2023-05-18T10:48:40,797   INFO:root:adding 'forgi/threedee/visual/__init__.py'
2023-05-18T10:48:40,800   INFO:root:adding 'forgi/threedee/visual/pymol.py'
2023-05-18T10:48:40,802   INFO:root:adding 'forgi/utilities/__init__.py'
2023-05-18T10:48:40,805   INFO:root:adding 'forgi/utilities/commandline_utils.py'
2023-05-18T10:48:40,806   INFO:root:adding 'forgi/utilities/debug.py'
2023-05-18T10:48:40,808   INFO:root:adding 'forgi/utilities/exceptions.py'
2023-05-18T10:48:40,809   INFO:root:adding 'forgi/utilities/graph.py'
2023-05-18T10:48:40,811   INFO:root:adding 'forgi/utilities/numbered_dotbracket.py'
2023-05-18T10:48:40,812   INFO:root:adding 'forgi/utilities/observedDict.py'
2023-05-18T10:48:40,815   INFO:root:adding 'forgi/utilities/stuff.py'
2023-05-18T10:48:40,816   INFO:root:adding 'forgi/visual/__init__.py'
2023-05-18T10:48:40,818   INFO:root:adding 'forgi/visual/fornac.py'
2023-05-18T10:48:40,820   INFO:root:adding 'forgi/visual/mplotlib.py'
2023-05-18T10:48:40,823   INFO:root:adding 'forgi-2.2.2.data/data/CREDITS'
2023-05-18T10:48:40,829   INFO:root:adding 'forgi-2.2.2.data/data/LICENSE'
2023-05-18T10:48:40,831   INFO:root:adding 'forgi-2.2.2.data/scripts/compare_RNA.py'
2023-05-18T10:48:40,834   INFO:root:adding 'forgi-2.2.2.data/scripts/describe_cg.py'
2023-05-18T10:48:40,835   INFO:root:adding 'forgi-2.2.2.data/scripts/forgi_config.py'
2023-05-18T10:48:40,838   INFO:root:adding 'forgi-2.2.2.data/scripts/pseudoknot_analyzer.py'
2023-05-18T10:48:40,840   INFO:root:adding 'forgi-2.2.2.data/scripts/rnaConvert.py'
2023-05-18T10:48:40,842   INFO:root:adding 'forgi-2.2.2.data/scripts/visualize_rna.py'
2023-05-18T10:48:40,844   INFO:root:adding 'forgi-2.2.2.dist-info/CREDITS'
2023-05-18T10:48:40,850   INFO:root:adding 'forgi-2.2.2.dist-info/LICENSE'
2023-05-18T10:48:40,851   INFO:root:adding 'forgi-2.2.2.dist-info/METADATA'
2023-05-18T10:48:40,852   INFO:root:adding 'forgi-2.2.2.dist-info/WHEEL'
2023-05-18T10:48:40,853   INFO:root:adding 'forgi-2.2.2.dist-info/top_level.txt'
2023-05-18T10:48:40,855   INFO:root:adding 'forgi-2.2.2.dist-info/RECORD'
2023-05-18T10:48:41,157   INFO:root:removing build/bdist.linux-armv7l/wheel
2023-05-18T10:48:41,680   Building wheel for forgi (setup.py): finished with status 'done'
2023-05-18T10:48:41,960   Created wheel for forgi: filename=forgi-2.2.2-cp39-cp39-linux_armv7l.whl size=27794558 sha256=5d0330ff6aa2005e316c859df18383e5edc15ef2a55219d65fbd44614699955f
2023-05-18T10:48:41,961   Stored in directory: /tmp/pip-ephem-wheel-cache-n72qjm5q/wheels/37/6c/30/6d447c22a4e988b9de835aa94c42ed8e018e86ddb4009e6910
2023-05-18T10:48:41,985 Successfully built forgi
2023-05-18T10:48:42,619 Removed build tracker: '/tmp/pip-build-tracker-tyf038zn'