2023-05-19T16:42:31,531 Created temporary directory: /tmp/pip-build-tracker-5ndlciio 2023-05-19T16:42:31,534 Initialized build tracking at /tmp/pip-build-tracker-5ndlciio 2023-05-19T16:42:31,535 Created build tracker: /tmp/pip-build-tracker-5ndlciio 2023-05-19T16:42:31,535 Entered build tracker: /tmp/pip-build-tracker-5ndlciio 2023-05-19T16:42:31,536 Created temporary directory: /tmp/pip-wheel-b9yae7vw 2023-05-19T16:42:31,544 Created temporary directory: /tmp/pip-ephem-wheel-cache-9h7lm0g2 2023-05-19T16:42:31,601 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-19T16:42:31,609 2 location(s) to search for versions of pyranges: 2023-05-19T16:42:31,609 * https://pypi.org/simple/pyranges/ 2023-05-19T16:42:31,609 * https://www.piwheels.org/simple/pyranges/ 2023-05-19T16:42:31,610 Fetching project page and analyzing links: https://pypi.org/simple/pyranges/ 2023-05-19T16:42:31,611 Getting page https://pypi.org/simple/pyranges/ 2023-05-19T16:42:31,615 Found 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https://www.piwheels.org/simple/pyranges/pyranges-0.0.1-py3-none-any.whl#sha256=43b9f740545b22d3dccf04f6057d5713e33474cabea480df7fbddf28faa1cf7b (from https://www.piwheels.org/simple/pyranges/) 2023-05-19T16:42:32,325 Skipping link: not a file: https://www.piwheels.org/simple/pyranges/ 2023-05-19T16:42:32,326 Skipping link: not a file: https://pypi.org/simple/pyranges/ 2023-05-19T16:42:32,401 Given no hashes to check 1 links for project 'pyranges': discarding no candidates 2023-05-19T16:42:32,433 Collecting pyranges==0.0.127 2023-05-19T16:42:32,437 Created temporary directory: /tmp/pip-unpack-95vzryf4 2023-05-19T16:42:32,623 Downloading pyranges-0.0.127.tar.gz (1.5 MB) 2023-05-19T16:42:34,193 Added pyranges==0.0.127 from https://files.pythonhosted.org/packages/3a/d1/2218a7559afa28f692879e23ea3fc39cd27b0cced6a52b355b1bc08a8557/pyranges-0.0.127.tar.gz to build tracker '/tmp/pip-build-tracker-5ndlciio' 2023-05-19T16:42:34,210 Created temporary directory: /tmp/pip-build-env-5tpg9wi3 2023-05-19T16:42:34,230 Installing build dependencies: started 2023-05-19T16:42:34,233 Running command pip subprocess to install build dependencies 2023-05-19T16:42:36,952 Using pip 23.1.2 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2023-05-19T16:42:37,695 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-19T16:42:41,549 Collecting setuptools>=61.0.0 2023-05-19T16:42:41,793 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.7.2-py3-none-any.whl (1.1 MB) 2023-05-19T16:42:42,437 Collecting wheel 2023-05-19T16:42:42,475 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-05-19T16:42:45,632 Collecting cython 2023-05-19T16:42:46,154 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.34-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2023-05-19T16:42:47,128 Collecting setuptools_scm[toml]>=6.2 2023-05-19T16:42:47,165 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB) 2023-05-19T16:42:48,075 Collecting packaging>=20.0 (from setuptools_scm[toml]>=6.2) 2023-05-19T16:42:48,112 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-05-19T16:42:48,343 Collecting typing-extensions (from setuptools_scm[toml]>=6.2) 2023-05-19T16:42:48,376 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.5.0-py3-none-any.whl (27 kB) 2023-05-19T16:42:48,639 Collecting tomli>=1.0.0 (from setuptools_scm[toml]>=6.2) 2023-05-19T16:42:48,673 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2023-05-19T16:42:49,764 Collecting importlib-metadata (from setuptools_scm[toml]>=6.2) 2023-05-19T16:42:49,802 Using cached https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.6.0-py3-none-any.whl (22 kB) 2023-05-19T16:42:51,387 Collecting zipp>=0.5 (from importlib-metadata->setuptools_scm[toml]>=6.2) 2023-05-19T16:42:51,419 Using cached https://www.piwheels.org/simple/zipp/zipp-3.15.0-py3-none-any.whl (6.8 kB) 2023-05-19T16:42:55,992 Installing collected packages: zipp, wheel, typing-extensions, tomli, setuptools, packaging, cython, importlib-metadata, setuptools_scm 2023-05-19T16:42:56,510 Creating /tmp/pip-build-env-5tpg9wi3/overlay/bin 2023-05-19T16:42:56,514 changing mode of /tmp/pip-build-env-5tpg9wi3/overlay/bin/wheel to 755 2023-05-19T16:43:06,419 changing mode of /tmp/pip-build-env-5tpg9wi3/overlay/bin/cygdb to 755 2023-05-19T16:43:06,424 changing mode of /tmp/pip-build-env-5tpg9wi3/overlay/bin/cython to 755 2023-05-19T16:43:06,428 changing mode of /tmp/pip-build-env-5tpg9wi3/overlay/bin/cythonize to 755 2023-05-19T16:43:06,994 Successfully installed cython-0.29.34 importlib-metadata-6.6.0 packaging-23.1 setuptools-67.7.2 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.5.0 wheel-0.40.0 zipp-3.15.0 2023-05-19T16:43:07,592 Installing build dependencies: finished with status 'done' 2023-05-19T16:43:07,604 Getting requirements to build wheel: started 2023-05-19T16:43:07,606 Running command Getting requirements to build wheel 2023-05-19T16:43:10,262 running egg_info 2023-05-19T16:43:10,280 writing pyranges.egg-info/PKG-INFO 2023-05-19T16:43:10,286 writing dependency_links to pyranges.egg-info/dependency_links.txt 2023-05-19T16:43:10,292 writing requirements to pyranges.egg-info/requires.txt 2023-05-19T16:43:10,295 writing top-level names to pyranges.egg-info/top_level.txt 2023-05-19T16:43:10,441 /tmp/pip-build-env-5tpg9wi3/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-05-19T16:43:10,442 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-05-19T16:43:10,442 listing git files failed - pretending there aren't any 2023-05-19T16:43:10,464 reading manifest file 'pyranges.egg-info/SOURCES.txt' 2023-05-19T16:43:10,480 adding license file 'LICENSE' 2023-05-19T16:43:10,503 writing manifest file 'pyranges.egg-info/SOURCES.txt' 2023-05-19T16:43:10,739 Getting requirements to build wheel: finished with status 'done' 2023-05-19T16:43:10,768 Created temporary directory: /tmp/pip-modern-metadata-a0sw_xpe 2023-05-19T16:43:10,774 Preparing metadata (pyproject.toml): started 2023-05-19T16:43:10,776 Running command Preparing metadata (pyproject.toml) 2023-05-19T16:43:13,348 running dist_info 2023-05-19T16:43:13,366 creating /tmp/pip-modern-metadata-a0sw_xpe/pyranges.egg-info 2023-05-19T16:43:13,382 writing /tmp/pip-modern-metadata-a0sw_xpe/pyranges.egg-info/PKG-INFO 2023-05-19T16:43:13,387 writing dependency_links to /tmp/pip-modern-metadata-a0sw_xpe/pyranges.egg-info/dependency_links.txt 2023-05-19T16:43:13,392 writing requirements to /tmp/pip-modern-metadata-a0sw_xpe/pyranges.egg-info/requires.txt 2023-05-19T16:43:13,394 writing top-level names to /tmp/pip-modern-metadata-a0sw_xpe/pyranges.egg-info/top_level.txt 2023-05-19T16:43:13,397 writing manifest file '/tmp/pip-modern-metadata-a0sw_xpe/pyranges.egg-info/SOURCES.txt' 2023-05-19T16:43:13,534 /tmp/pip-build-env-5tpg9wi3/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-05-19T16:43:13,534 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-05-19T16:43:13,535 listing git files failed - pretending there aren't any 2023-05-19T16:43:13,555 reading manifest file '/tmp/pip-modern-metadata-a0sw_xpe/pyranges.egg-info/SOURCES.txt' 2023-05-19T16:43:13,562 adding license file 'LICENSE' 2023-05-19T16:43:13,574 writing manifest file '/tmp/pip-modern-metadata-a0sw_xpe/pyranges.egg-info/SOURCES.txt' 2023-05-19T16:43:13,577 creating '/tmp/pip-modern-metadata-a0sw_xpe/pyranges-0.0.127.dist-info' 2023-05-19T16:43:13,900 Preparing metadata (pyproject.toml): finished with status 'done' 2023-05-19T16:43:13,917 Source in /tmp/pip-wheel-b9yae7vw/pyranges_af37c781bf894a1794a887ef1fd7ee59 has version 0.0.127, which satisfies requirement pyranges==0.0.127 from https://files.pythonhosted.org/packages/3a/d1/2218a7559afa28f692879e23ea3fc39cd27b0cced6a52b355b1bc08a8557/pyranges-0.0.127.tar.gz 2023-05-19T16:43:13,918 Removed pyranges==0.0.127 from https://files.pythonhosted.org/packages/3a/d1/2218a7559afa28f692879e23ea3fc39cd27b0cced6a52b355b1bc08a8557/pyranges-0.0.127.tar.gz from build tracker '/tmp/pip-build-tracker-5ndlciio' 2023-05-19T16:43:13,929 Created temporary directory: /tmp/pip-unpack-yxa0rcap 2023-05-19T16:43:13,931 Building wheels for collected packages: pyranges 2023-05-19T16:43:13,940 Created temporary directory: /tmp/pip-wheel-gqnesx6h 2023-05-19T16:43:13,941 Destination directory: /tmp/pip-wheel-gqnesx6h 2023-05-19T16:43:13,946 Building wheel for pyranges (pyproject.toml): started 2023-05-19T16:43:13,948 Running command Building wheel for pyranges (pyproject.toml) 2023-05-19T16:43:16,442 running bdist_wheel 2023-05-19T16:43:16,498 running build 2023-05-19T16:43:16,499 running build_py 2023-05-19T16:43:16,516 creating build 2023-05-19T16:43:16,517 creating build/lib 2023-05-19T16:43:16,518 creating build/lib/docs 2023-05-19T16:43:16,520 copying docs/conf.py -> build/lib/docs 2023-05-19T16:43:16,527 creating build/lib/pyranges 2023-05-19T16:43:16,529 copying pyranges/statistics.py -> build/lib/pyranges 2023-05-19T16:43:16,535 copying pyranges/pyranges_main.py -> build/lib/pyranges 2023-05-19T16:43:16,553 copying pyranges/get_fasta.py -> build/lib/pyranges 2023-05-19T16:43:16,557 copying pyranges/multioverlap.py -> build/lib/pyranges 2023-05-19T16:43:16,562 copying pyranges/data.py -> build/lib/pyranges 2023-05-19T16:43:16,567 copying pyranges/helpers.py -> build/lib/pyranges 2023-05-19T16:43:16,570 copying pyranges/stats.py -> build/lib/pyranges 2023-05-19T16:43:16,574 copying pyranges/multithreaded.py -> build/lib/pyranges 2023-05-19T16:43:16,578 copying pyranges/tostring2.py -> build/lib/pyranges 2023-05-19T16:43:16,583 copying pyranges/subset.py -> build/lib/pyranges 2023-05-19T16:43:16,586 copying pyranges/genomicfeatures.py -> build/lib/pyranges 2023-05-19T16:43:16,591 copying pyranges/__init__.py -> build/lib/pyranges 2023-05-19T16:43:16,596 copying pyranges/readers.py -> build/lib/pyranges 2023-05-19T16:43:16,601 copying pyranges/out.py -> build/lib/pyranges 2023-05-19T16:43:16,607 creating build/lib/tests 2023-05-19T16:43:16,608 copying tests/helpers.py -> build/lib/tests 2023-05-19T16:43:16,614 creating build/lib/book 2023-05-19T16:43:16,616 copying book/exons.py -> build/lib/book 2023-05-19T16:43:16,620 copying book/make_book.py -> build/lib/book 2023-05-19T16:43:16,629 creating build/lib/pyranges/methods 2023-05-19T16:43:16,631 copying pyranges/methods/join.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,636 copying pyranges/methods/statistics.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,639 copying pyranges/methods/drop.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,643 copying pyranges/methods/attr.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,647 copying pyranges/methods/k_nearest.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,651 copying pyranges/methods/concat.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,655 copying pyranges/methods/getitem.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,658 copying pyranges/methods/split.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,662 copying pyranges/methods/spliced_subsequence.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,666 copying pyranges/methods/intersection.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,670 copying pyranges/methods/merge.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,674 copying pyranges/methods/coverage.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,678 copying pyranges/methods/cluster.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,682 copying pyranges/methods/insert.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,685 copying pyranges/methods/drop_duplicates.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,689 copying pyranges/methods/itergrs.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,692 copying pyranges/methods/boundaries.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,696 copying pyranges/methods/new_position.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,700 copying pyranges/methods/subsequence.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,703 copying pyranges/methods/init.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,707 copying pyranges/methods/sort.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,711 copying pyranges/methods/max_disjoint.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,714 copying pyranges/methods/__init__.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,717 copying pyranges/methods/call.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,721 copying pyranges/methods/to_rle.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,725 copying pyranges/methods/nearest.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,729 copying pyranges/methods/windows.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,733 copying pyranges/methods/summary.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,736 copying pyranges/methods/subtraction.py -> build/lib/pyranges/methods 2023-05-19T16:43:16,743 creating build/lib/tests/unit 2023-05-19T16:43:16,745 copying tests/unit/statistics.py -> build/lib/tests/unit 2023-05-19T16:43:16,749 copying tests/unit/test_pickle.py -> build/lib/tests/unit 2023-05-19T16:43:16,753 copying tests/unit/k_nearest.py -> build/lib/tests/unit 2023-05-19T16:43:16,757 copying tests/unit/conftest.py -> build/lib/tests/unit 2023-05-19T16:43:16,761 copying tests/unit/test_genomicfeatures.py -> build/lib/tests/unit 2023-05-19T16:43:16,765 copying tests/unit/test_change_chromosome_custom.py -> build/lib/tests/unit 2023-05-19T16:43:16,768 copying tests/unit/test_guessers.py -> build/lib/tests/unit 2023-05-19T16:43:16,772 copying tests/unit/test_io.py -> build/lib/tests/unit 2023-05-19T16:43:16,776 copying tests/unit/test_stranded.py -> build/lib/tests/unit 2023-05-19T16:43:16,780 copying tests/unit/test_getset_attr.py -> build/lib/tests/unit 2023-05-19T16:43:16,783 copying tests/unit/test_count_overlaps.py -> build/lib/tests/unit 2023-05-19T16:43:16,787 copying tests/unit/__init__.py -> build/lib/tests/unit 2023-05-19T16:43:16,790 copying tests/unit/test_concat.py -> build/lib/tests/unit 2023-05-19T16:43:16,795 creating build/lib/tests/property_based 2023-05-19T16:43:16,797 copying tests/property_based/test_unary.py -> build/lib/tests/property_based 2023-05-19T16:43:16,802 copying tests/property_based/test_do_not_error.py -> build/lib/tests/property_based 2023-05-19T16:43:16,806 copying tests/property_based/hypothesis_helper.py -> build/lib/tests/property_based 2023-05-19T16:43:16,810 copying tests/property_based/test_binary.py -> build/lib/tests/property_based 2023-05-19T16:43:16,815 copying tests/property_based/__init__.py -> build/lib/tests/property_based 2023-05-19T16:43:16,820 creating build/lib/tests/unit/unit 2023-05-19T16:43:16,821 copying tests/unit/unit/__init__.py -> build/lib/tests/unit/unit 2023-05-19T16:43:16,826 creating build/lib/tests/unit/slack 2023-05-19T16:43:16,828 copying tests/unit/slack/test_slack.py -> build/lib/tests/unit/slack 2023-05-19T16:43:16,833 creating build/lib/tests/unit/unstrand 2023-05-19T16:43:16,835 copying tests/unit/unstrand/test_unstrand.py -> build/lib/tests/unit/unstrand 2023-05-19T16:43:16,840 creating build/lib/tests/unit/data 2023-05-19T16:43:16,842 copying tests/unit/data/test_data.py -> build/lib/tests/unit/data 2023-05-19T16:43:16,847 creating build/lib/tests/unit/df_dict_mismatch 2023-05-19T16:43:16,849 copying tests/unit/df_dict_mismatch/test_mismatch.py -> build/lib/tests/unit/df_dict_mismatch 2023-05-19T16:43:16,854 creating build/lib/tests/unit/join 2023-05-19T16:43:16,856 copying tests/unit/join/test_join.py -> build/lib/tests/unit/join 2023-05-19T16:43:16,862 creating build/lib/tests/unit/out 2023-05-19T16:43:16,864 copying tests/unit/out/test_out.py -> build/lib/tests/unit/out 2023-05-19T16:43:16,869 creating build/lib/tests/unit/new_position 2023-05-19T16:43:16,871 copying tests/unit/new_position/test_new_position.py -> build/lib/tests/unit/new_position 2023-05-19T16:43:16,876 creating build/lib/tests/unit/windows 2023-05-19T16:43:16,878 copying tests/unit/windows/test_windows.py -> build/lib/tests/unit/windows 2023-05-19T16:43:16,883 creating build/lib/tests/unit/getitem 2023-05-19T16:43:16,885 copying tests/unit/getitem/test_getitem.py -> build/lib/tests/unit/getitem 2023-05-19T16:43:16,888 running egg_info 2023-05-19T16:43:16,919 writing pyranges.egg-info/PKG-INFO 2023-05-19T16:43:16,923 writing dependency_links to pyranges.egg-info/dependency_links.txt 2023-05-19T16:43:16,927 writing requirements to pyranges.egg-info/requires.txt 2023-05-19T16:43:16,929 writing top-level names to pyranges.egg-info/top_level.txt 2023-05-19T16:43:17,037 /tmp/pip-build-env-5tpg9wi3/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-05-19T16:43:17,037 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-05-19T16:43:17,038 listing git files failed - pretending there aren't any 2023-05-19T16:43:17,057 reading manifest file 'pyranges.egg-info/SOURCES.txt' 2023-05-19T16:43:17,093 adding license file 'LICENSE' 2023-05-19T16:43:17,116 writing manifest file 'pyranges.egg-info/SOURCES.txt' 2023-05-19T16:43:17,145 copying docs/Makefile -> build/lib/docs 2023-05-19T16:43:17,150 copying docs/index.html -> build/lib/docs 2023-05-19T16:43:17,154 copying docs/index.rst -> build/lib/docs 2023-05-19T16:43:17,158 copying docs/make.bat -> build/lib/docs 2023-05-19T16:43:17,162 copying docs/requirements.txt -> build/lib/docs 2023-05-19T16:43:17,166 copying pyranges/docs -> build/lib/pyranges 2023-05-19T16:43:17,170 copying tests/.fuse_hidden0000017200000002 -> build/lib/tests 2023-05-19T16:43:17,175 copying tests/hi -> build/lib/tests 2023-05-19T16:43:17,179 creating build/lib/graphs 2023-05-19T16:43:17,181 copying graphs/hypothesis-tested-brightgreen.svg -> build/lib/graphs 2023-05-19T16:43:17,186 copying graphs/main_paper_annotation_binary.png -> build/lib/graphs 2023-05-19T16:43:17,201 copying graphs/memory.png -> build/lib/graphs 2023-05-19T16:43:17,214 copying graphs/time.png -> build/lib/graphs 2023-05-19T16:43:17,227 copying book/_bookdown.yml -> build/lib/book 2023-05-19T16:43:17,230 copying book/build_book.yml -> build/lib/book 2023-05-19T16:43:17,235 copying book/colocalization.Rmd -> build/lib/book 2023-05-19T16:43:17,238 copying book/compile.R -> build/lib/book 2023-05-19T16:43:17,243 copying book/compile2.R -> build/lib/book 2023-05-19T16:43:17,248 copying book/concat.Rmd -> build/lib/book 2023-05-19T16:43:17,251 copying book/count_overlaps.Rmd -> build/lib/book 2023-05-19T16:43:17,255 copying book/coverage.Rmd -> build/lib/book 2023-05-19T16:43:17,259 copying book/creating.Rmd -> build/lib/book 2023-05-19T16:43:17,264 copying book/custom_methods.Rmd -> build/lib/book 2023-05-19T16:43:17,268 copying book/databases.Rmd -> build/lib/book 2023-05-19T16:43:17,272 copying book/fisher_exact.Rmd -> build/lib/book 2023-05-19T16:43:17,276 copying book/genomicfeatures.Rmd -> build/lib/book 2023-05-19T16:43:17,280 copying book/index.Rmd -> build/lib/book 2023-05-19T16:43:17,284 copying book/insert.Rmd -> build/lib/book 2023-05-19T16:43:17,289 copying book/intersection.Rmd -> build/lib/book 2023-05-19T16:43:17,293 copying book/iterate.Rmd -> build/lib/book 2023-05-19T16:43:17,298 copying book/join.Rmd -> build/lib/book 2023-05-19T16:43:17,302 copying book/knearest.Rmd -> build/lib/book 2023-05-19T16:43:17,306 copying book/manipulation.Rmd -> build/lib/book 2023-05-19T16:43:17,310 copying book/mcc.Rmd -> build/lib/book 2023-05-19T16:43:17,314 copying book/multithreading.Rmd -> build/lib/book 2023-05-19T16:43:17,318 copying book/nearest.Rmd -> build/lib/book 2023-05-19T16:43:17,322 copying book/piping.Rmd -> build/lib/book 2023-05-19T16:43:17,326 copying book/printing.Rmd -> build/lib/book 2023-05-19T16:43:17,330 copying book/pyranges.css -> build/lib/book 2023-05-19T16:43:17,334 copying book/reldist.Rmd -> build/lib/book 2023-05-19T16:43:17,338 copying book/rowbased_statistics.Rmd -> build/lib/book 2023-05-19T16:43:17,343 copying book/runlength_dict.Rmd -> build/lib/book 2023-05-19T16:43:17,347 copying book/runlengths.Rmd -> build/lib/book 2023-05-19T16:43:17,352 copying book/simes.Rmd -> build/lib/book 2023-05-19T16:43:17,356 copying book/single_range_methods.Rmd -> build/lib/book 2023-05-19T16:43:17,360 copying book/sort.Rmd -> build/lib/book 2023-05-19T16:43:17,365 copying book/subset.Rmd -> build/lib/book 2023-05-19T16:43:17,368 copying book/subsetting_pyrles.Rmd -> build/lib/book 2023-05-19T16:43:17,373 copying book/subsetting_rles.Rmd -> build/lib/book 2023-05-19T16:43:17,377 copying book/subtract.Rmd -> build/lib/book 2023-05-19T16:43:17,381 copying book/summary.Rmd -> build/lib/book 2023-05-19T16:43:17,385 copying book/tutorial.Rmd -> build/lib/book 2023-05-19T16:43:17,390 copying book/writing.Rmd -> build/lib/book 2023-05-19T16:43:17,394 creating build/lib/pyranges/example_data 2023-05-19T16:43:17,396 copying pyranges/example_data/aorta.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,400 copying pyranges/example_data/aorta2.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,404 copying pyranges/example_data/bw.bw -> build/lib/pyranges/example_data 2023-05-19T16:43:17,409 copying pyranges/example_data/chipseq.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,428 copying pyranges/example_data/chipseq_background.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,451 copying pyranges/example_data/chromsizes.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,455 copying pyranges/example_data/control.bam -> build/lib/pyranges/example_data 2023-05-19T16:43:17,464 copying pyranges/example_data/control.bam.bai -> build/lib/pyranges/example_data 2023-05-19T16:43:17,566 copying pyranges/example_data/cpg.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,572 copying pyranges/example_data/ensembl.gtf -> build/lib/pyranges/example_data 2023-05-19T16:43:17,579 copying pyranges/example_data/ensembl_human.gtf.gz -> build/lib/pyranges/example_data 2023-05-19T16:43:17,585 copying pyranges/example_data/exons.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,593 copying pyranges/example_data/f1.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,597 copying pyranges/example_data/f2.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,602 copying pyranges/example_data/gencode_human.gtf.gz -> build/lib/pyranges/example_data 2023-05-19T16:43:17,610 copying pyranges/example_data/lamina.bed -> build/lib/pyranges/example_data 2023-05-19T16:43:17,618 copying pyranges/example_data/ucsc_human.bed.gz -> build/lib/pyranges/example_data 2023-05-19T16:43:17,626 copying tests/unit/chip_10.bed -> build/lib/tests/unit 2023-05-19T16:43:17,630 copying tests/unit/f1.bed -> build/lib/tests/unit 2023-05-19T16:43:17,634 copying tests/unit/f2.bed -> build/lib/tests/unit 2023-05-19T16:43:17,638 copying tests/unit/hi -> build/lib/tests/unit 2023-05-19T16:43:17,643 creating build/lib/tests/unit/test_data 2023-05-19T16:43:17,644 copying tests/unit/test_data/ensembl.gtf -> build/lib/tests/unit/test_data 2023-05-19T16:43:17,651 copying tests/unit/test_data/gencode.gff3 -> build/lib/tests/unit/test_data 2023-05-19T16:43:17,658 copying tests/unit/test_data/test_sorted.bam -> build/lib/tests/unit/test_data 2023-05-19T16:43:17,666 copying tests/unit/test_data/test_sorted.bam.bai -> build/lib/tests/unit/test_data 2023-05-19T16:43:17,792 installing to build/bdist.linux-armv7l/wheel 2023-05-19T16:43:17,793 running install 2023-05-19T16:43:17,855 running install_lib 2023-05-19T16:43:17,872 creating build/bdist.linux-armv7l 2023-05-19T16:43:17,874 creating build/bdist.linux-armv7l/wheel 2023-05-19T16:43:17,878 creating build/bdist.linux-armv7l/wheel/docs 2023-05-19T16:43:17,880 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/docs 2023-05-19T16:43:17,885 copying build/lib/docs/Makefile -> build/bdist.linux-armv7l/wheel/docs 2023-05-19T16:43:17,889 copying build/lib/docs/requirements.txt -> build/bdist.linux-armv7l/wheel/docs 2023-05-19T16:43:17,893 copying build/lib/docs/make.bat -> build/bdist.linux-armv7l/wheel/docs 2023-05-19T16:43:17,897 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/docs 2023-05-19T16:43:17,901 copying build/lib/docs/index.html -> build/bdist.linux-armv7l/wheel/docs 2023-05-19T16:43:17,906 creating build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:17,909 copying build/lib/pyranges/statistics.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:17,916 copying build/lib/pyranges/docs -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:17,919 copying build/lib/pyranges/pyranges_main.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:17,938 copying build/lib/pyranges/get_fasta.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:17,943 copying build/lib/pyranges/multioverlap.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:17,947 copying build/lib/pyranges/data.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:17,953 creating build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:17,955 copying build/lib/pyranges/example_data/aorta2.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:17,959 copying build/lib/pyranges/example_data/cpg.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:17,965 copying build/lib/pyranges/example_data/ensembl_human.gtf.gz -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:17,970 copying build/lib/pyranges/example_data/f1.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:17,974 copying build/lib/pyranges/example_data/control.bam.bai -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,068 copying build/lib/pyranges/example_data/f2.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,071 copying build/lib/pyranges/example_data/bw.bw -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,077 copying build/lib/pyranges/example_data/ensembl.gtf -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,084 copying build/lib/pyranges/example_data/lamina.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,091 copying build/lib/pyranges/example_data/chromsizes.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,094 copying build/lib/pyranges/example_data/chipseq.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,114 copying build/lib/pyranges/example_data/aorta.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,118 copying build/lib/pyranges/example_data/control.bam -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,127 copying build/lib/pyranges/example_data/exons.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,135 copying build/lib/pyranges/example_data/ucsc_human.bed.gz -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,143 copying build/lib/pyranges/example_data/chipseq_background.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,163 copying build/lib/pyranges/example_data/gencode_human.gtf.gz -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-05-19T16:43:18,171 copying build/lib/pyranges/helpers.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,177 creating build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,179 copying build/lib/pyranges/methods/join.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,183 copying build/lib/pyranges/methods/statistics.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,187 copying build/lib/pyranges/methods/drop.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,190 copying build/lib/pyranges/methods/attr.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,194 copying build/lib/pyranges/methods/k_nearest.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,198 copying build/lib/pyranges/methods/concat.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,202 copying build/lib/pyranges/methods/getitem.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,205 copying build/lib/pyranges/methods/split.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,209 copying build/lib/pyranges/methods/spliced_subsequence.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,212 copying build/lib/pyranges/methods/intersection.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,216 copying build/lib/pyranges/methods/merge.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,219 copying build/lib/pyranges/methods/coverage.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,223 copying build/lib/pyranges/methods/cluster.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,227 copying build/lib/pyranges/methods/insert.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,230 copying build/lib/pyranges/methods/drop_duplicates.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,234 copying build/lib/pyranges/methods/itergrs.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,237 copying build/lib/pyranges/methods/boundaries.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,241 copying build/lib/pyranges/methods/new_position.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,245 copying build/lib/pyranges/methods/subsequence.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,248 copying build/lib/pyranges/methods/init.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,253 copying build/lib/pyranges/methods/sort.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,256 copying build/lib/pyranges/methods/max_disjoint.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,260 copying build/lib/pyranges/methods/__init__.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,263 copying build/lib/pyranges/methods/call.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,267 copying build/lib/pyranges/methods/to_rle.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,270 copying build/lib/pyranges/methods/nearest.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,275 copying build/lib/pyranges/methods/windows.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,278 copying build/lib/pyranges/methods/summary.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,282 copying build/lib/pyranges/methods/subtraction.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-05-19T16:43:18,286 copying build/lib/pyranges/stats.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,290 copying build/lib/pyranges/multithreaded.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,295 copying build/lib/pyranges/tostring2.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,299 copying build/lib/pyranges/subset.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,304 copying build/lib/pyranges/genomicfeatures.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,310 copying build/lib/pyranges/__init__.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,316 copying build/lib/pyranges/readers.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,322 copying build/lib/pyranges/out.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-05-19T16:43:18,328 creating build/bdist.linux-armv7l/wheel/tests 2023-05-19T16:43:18,332 creating build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,335 copying build/lib/tests/unit/statistics.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,340 creating build/bdist.linux-armv7l/wheel/tests/unit/unit 2023-05-19T16:43:18,343 copying build/lib/tests/unit/unit/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit/unit 2023-05-19T16:43:18,347 copying build/lib/tests/unit/hi -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,351 copying build/lib/tests/unit/test_pickle.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,355 copying build/lib/tests/unit/k_nearest.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,359 copying build/lib/tests/unit/conftest.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,364 creating build/bdist.linux-armv7l/wheel/tests/unit/slack 2023-05-19T16:43:18,365 copying build/lib/tests/unit/slack/test_slack.py -> build/bdist.linux-armv7l/wheel/tests/unit/slack 2023-05-19T16:43:18,370 creating build/bdist.linux-armv7l/wheel/tests/unit/unstrand 2023-05-19T16:43:18,372 copying build/lib/tests/unit/unstrand/test_unstrand.py -> build/bdist.linux-armv7l/wheel/tests/unit/unstrand 2023-05-19T16:43:18,376 copying build/lib/tests/unit/f1.bed -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,379 copying build/lib/tests/unit/test_genomicfeatures.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,383 copying build/lib/tests/unit/chip_10.bed -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,386 copying build/lib/tests/unit/f2.bed -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,391 creating build/bdist.linux-armv7l/wheel/tests/unit/data 2023-05-19T16:43:18,393 copying build/lib/tests/unit/data/test_data.py -> build/bdist.linux-armv7l/wheel/tests/unit/data 2023-05-19T16:43:18,397 copying build/lib/tests/unit/test_change_chromosome_custom.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,401 creating build/bdist.linux-armv7l/wheel/tests/unit/df_dict_mismatch 2023-05-19T16:43:18,403 copying build/lib/tests/unit/df_dict_mismatch/test_mismatch.py -> build/bdist.linux-armv7l/wheel/tests/unit/df_dict_mismatch 2023-05-19T16:43:18,407 copying build/lib/tests/unit/test_guessers.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,411 copying build/lib/tests/unit/test_io.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,415 creating build/bdist.linux-armv7l/wheel/tests/unit/join 2023-05-19T16:43:18,417 copying build/lib/tests/unit/join/test_join.py -> build/bdist.linux-armv7l/wheel/tests/unit/join 2023-05-19T16:43:18,421 copying build/lib/tests/unit/test_stranded.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,424 copying build/lib/tests/unit/test_getset_attr.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,429 creating build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-05-19T16:43:18,431 copying build/lib/tests/unit/test_data/test_sorted.bam -> build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-05-19T16:43:18,441 copying build/lib/tests/unit/test_data/ensembl.gtf -> build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-05-19T16:43:18,447 copying build/lib/tests/unit/test_data/gencode.gff3 -> build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-05-19T16:43:18,454 copying build/lib/tests/unit/test_data/test_sorted.bam.bai -> build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-05-19T16:43:18,531 copying build/lib/tests/unit/test_count_overlaps.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,537 creating build/bdist.linux-armv7l/wheel/tests/unit/out 2023-05-19T16:43:18,539 copying build/lib/tests/unit/out/test_out.py -> build/bdist.linux-armv7l/wheel/tests/unit/out 2023-05-19T16:43:18,544 creating build/bdist.linux-armv7l/wheel/tests/unit/new_position 2023-05-19T16:43:18,546 copying build/lib/tests/unit/new_position/test_new_position.py -> build/bdist.linux-armv7l/wheel/tests/unit/new_position 2023-05-19T16:43:18,550 copying build/lib/tests/unit/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,554 creating build/bdist.linux-armv7l/wheel/tests/unit/windows 2023-05-19T16:43:18,556 copying build/lib/tests/unit/windows/test_windows.py -> build/bdist.linux-armv7l/wheel/tests/unit/windows 2023-05-19T16:43:18,560 copying build/lib/tests/unit/test_concat.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-05-19T16:43:18,565 creating build/bdist.linux-armv7l/wheel/tests/unit/getitem 2023-05-19T16:43:18,566 copying build/lib/tests/unit/getitem/test_getitem.py -> build/bdist.linux-armv7l/wheel/tests/unit/getitem 2023-05-19T16:43:18,570 copying build/lib/tests/hi -> build/bdist.linux-armv7l/wheel/tests 2023-05-19T16:43:18,575 creating build/bdist.linux-armv7l/wheel/tests/property_based 2023-05-19T16:43:18,576 copying build/lib/tests/property_based/test_unary.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-05-19T16:43:18,582 copying build/lib/tests/property_based/test_do_not_error.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-05-19T16:43:18,585 copying build/lib/tests/property_based/hypothesis_helper.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-05-19T16:43:18,589 copying build/lib/tests/property_based/test_binary.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-05-19T16:43:18,595 copying build/lib/tests/property_based/__init__.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-05-19T16:43:18,598 copying build/lib/tests/.fuse_hidden0000017200000002 -> build/bdist.linux-armv7l/wheel/tests 2023-05-19T16:43:18,603 copying build/lib/tests/helpers.py -> build/bdist.linux-armv7l/wheel/tests 2023-05-19T16:43:18,608 creating build/bdist.linux-armv7l/wheel/graphs 2023-05-19T16:43:18,611 copying build/lib/graphs/main_paper_annotation_binary.png -> build/bdist.linux-armv7l/wheel/graphs 2023-05-19T16:43:18,629 copying build/lib/graphs/hypothesis-tested-brightgreen.svg -> build/bdist.linux-armv7l/wheel/graphs 2023-05-19T16:43:18,633 copying build/lib/graphs/memory.png -> build/bdist.linux-armv7l/wheel/graphs 2023-05-19T16:43:18,649 copying build/lib/graphs/time.png -> build/bdist.linux-armv7l/wheel/graphs 2023-05-19T16:43:18,664 creating build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,666 copying build/lib/book/build_book.yml -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,671 copying build/lib/book/sort.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,675 copying build/lib/book/compile.R -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,679 copying build/lib/book/subset.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,683 copying build/lib/book/index.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,688 copying build/lib/book/summary.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,692 copying build/lib/book/single_range_methods.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,696 copying build/lib/book/subtract.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,700 copying build/lib/book/subsetting_pyrles.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,704 copying build/lib/book/rowbased_statistics.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,709 copying build/lib/book/reldist.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,713 copying build/lib/book/tutorial.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,718 copying build/lib/book/runlengths.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,723 copying build/lib/book/concat.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,727 copying build/lib/book/subsetting_rles.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,731 copying build/lib/book/count_overlaps.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,735 copying build/lib/book/databases.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,740 copying build/lib/book/exons.py -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,744 copying build/lib/book/mcc.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,748 copying build/lib/book/runlength_dict.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,752 copying build/lib/book/_bookdown.yml -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,757 copying build/lib/book/make_book.py -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,761 copying build/lib/book/iterate.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,765 copying build/lib/book/manipulation.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,770 copying build/lib/book/join.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,774 copying build/lib/book/genomicfeatures.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,778 copying build/lib/book/creating.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,783 copying build/lib/book/insert.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,787 copying build/lib/book/printing.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,792 copying build/lib/book/compile2.R -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,796 copying build/lib/book/writing.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,800 copying build/lib/book/multithreading.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,804 copying build/lib/book/nearest.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,808 copying build/lib/book/pyranges.css -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,813 copying build/lib/book/custom_methods.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,817 copying build/lib/book/coverage.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,821 copying build/lib/book/fisher_exact.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,826 copying build/lib/book/intersection.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,830 copying build/lib/book/piping.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,834 copying build/lib/book/simes.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,838 copying build/lib/book/knearest.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,843 copying build/lib/book/colocalization.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-05-19T16:43:18,846 running install_egg_info 2023-05-19T16:43:18,863 Copying pyranges.egg-info to build/bdist.linux-armv7l/wheel/pyranges-0.0.127-py3.7.egg-info 2023-05-19T16:43:18,885 running install_scripts 2023-05-19T16:43:18,926 creating build/bdist.linux-armv7l/wheel/pyranges-0.0.127.dist-info/WHEEL 2023-05-19T16:43:18,932 creating '/tmp/pip-wheel-gqnesx6h/.tmp-k8l047dv/pyranges-0.0.127-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-19T16:43:18,943 adding 'book/_bookdown.yml' 2023-05-19T16:43:18,947 adding 'book/build_book.yml' 2023-05-19T16:43:18,950 adding 'book/colocalization.Rmd' 2023-05-19T16:43:18,953 adding 'book/compile.R' 2023-05-19T16:43:18,956 adding 'book/compile2.R' 2023-05-19T16:43:18,959 adding 'book/concat.Rmd' 2023-05-19T16:43:18,963 adding 'book/count_overlaps.Rmd' 2023-05-19T16:43:18,966 adding 'book/coverage.Rmd' 2023-05-19T16:43:18,969 adding 'book/creating.Rmd' 2023-05-19T16:43:18,973 adding 'book/custom_methods.Rmd' 2023-05-19T16:43:18,976 adding 'book/databases.Rmd' 2023-05-19T16:43:18,979 adding 'book/exons.py' 2023-05-19T16:43:18,982 adding 'book/fisher_exact.Rmd' 2023-05-19T16:43:18,985 adding 'book/genomicfeatures.Rmd' 2023-05-19T16:43:18,989 adding 'book/index.Rmd' 2023-05-19T16:43:18,992 adding 'book/insert.Rmd' 2023-05-19T16:43:18,995 adding 'book/intersection.Rmd' 2023-05-19T16:43:18,998 adding 'book/iterate.Rmd' 2023-05-19T16:43:19,002 adding 'book/join.Rmd' 2023-05-19T16:43:19,005 adding 'book/knearest.Rmd' 2023-05-19T16:43:19,008 adding 'book/make_book.py' 2023-05-19T16:43:19,012 adding 'book/manipulation.Rmd' 2023-05-19T16:43:19,015 adding 'book/mcc.Rmd' 2023-05-19T16:43:19,018 adding 'book/multithreading.Rmd' 2023-05-19T16:43:19,022 adding 'book/nearest.Rmd' 2023-05-19T16:43:19,025 adding 'book/piping.Rmd' 2023-05-19T16:43:19,028 adding 'book/printing.Rmd' 2023-05-19T16:43:19,031 adding 'book/pyranges.css' 2023-05-19T16:43:19,034 adding 'book/reldist.Rmd' 2023-05-19T16:43:19,037 adding 'book/rowbased_statistics.Rmd' 2023-05-19T16:43:19,040 adding 'book/runlength_dict.Rmd' 2023-05-19T16:43:19,044 adding 'book/runlengths.Rmd' 2023-05-19T16:43:19,047 adding 'book/simes.Rmd' 2023-05-19T16:43:19,050 adding 'book/single_range_methods.Rmd' 2023-05-19T16:43:19,054 adding 'book/sort.Rmd' 2023-05-19T16:43:19,057 adding 'book/subset.Rmd' 2023-05-19T16:43:19,060 adding 'book/subsetting_pyrles.Rmd' 2023-05-19T16:43:19,063 adding 'book/subsetting_rles.Rmd' 2023-05-19T16:43:19,066 adding 'book/subtract.Rmd' 2023-05-19T16:43:19,069 adding 'book/summary.Rmd' 2023-05-19T16:43:19,079 adding 'book/tutorial.Rmd' 2023-05-19T16:43:19,083 adding 'book/writing.Rmd' 2023-05-19T16:43:19,087 adding 'docs/Makefile' 2023-05-19T16:43:19,090 adding 'docs/conf.py' 2023-05-19T16:43:19,094 adding 'docs/index.html' 2023-05-19T16:43:19,097 adding 'docs/index.rst' 2023-05-19T16:43:19,100 adding 'docs/make.bat' 2023-05-19T16:43:19,103 adding 'docs/requirements.txt' 2023-05-19T16:43:19,107 adding 'graphs/hypothesis-tested-brightgreen.svg' 2023-05-19T16:43:19,182 adding 'graphs/main_paper_annotation_binary.png' 2023-05-19T16:43:19,252 adding 'graphs/memory.png' 2023-05-19T16:43:19,314 adding 'graphs/time.png' 2023-05-19T16:43:19,325 adding 'pyranges/__init__.py' 2023-05-19T16:43:19,333 adding 'pyranges/data.py' 2023-05-19T16:43:19,336 adding 'pyranges/docs' 2023-05-19T16:43:19,344 adding 'pyranges/genomicfeatures.py' 2023-05-19T16:43:19,348 adding 'pyranges/get_fasta.py' 2023-05-19T16:43:19,352 adding 'pyranges/helpers.py' 2023-05-19T16:43:19,356 adding 'pyranges/multioverlap.py' 2023-05-19T16:43:19,361 adding 'pyranges/multithreaded.py' 2023-05-19T16:43:19,366 adding 'pyranges/out.py' 2023-05-19T16:43:19,414 adding 'pyranges/pyranges_main.py' 2023-05-19T16:43:19,426 adding 'pyranges/readers.py' 2023-05-19T16:43:19,435 adding 'pyranges/statistics.py' 2023-05-19T16:43:19,438 adding 'pyranges/stats.py' 2023-05-19T16:43:19,442 adding 'pyranges/subset.py' 2023-05-19T16:43:19,446 adding 'pyranges/tostring2.py' 2023-05-19T16:43:19,451 adding 'pyranges/example_data/aorta.bed' 2023-05-19T16:43:19,454 adding 'pyranges/example_data/aorta2.bed' 2023-05-19T16:43:19,458 adding 'pyranges/example_data/bw.bw' 2023-05-19T16:43:19,591 adding 'pyranges/example_data/chipseq.bed' 2023-05-19T16:43:19,734 adding 'pyranges/example_data/chipseq_background.bed' 2023-05-19T16:43:19,742 adding 'pyranges/example_data/chromsizes.bed' 2023-05-19T16:43:19,764 adding 'pyranges/example_data/control.bam' 2023-05-19T16:43:19,941 adding 'pyranges/example_data/control.bam.bai' 2023-05-19T16:43:19,987 adding 'pyranges/example_data/cpg.bed' 2023-05-19T16:43:19,993 adding 'pyranges/example_data/ensembl.gtf' 2023-05-19T16:43:20,004 adding 'pyranges/example_data/ensembl_human.gtf.gz' 2023-05-19T16:43:20,027 adding 'pyranges/example_data/exons.bed' 2023-05-19T16:43:20,030 adding 'pyranges/example_data/f1.bed' 2023-05-19T16:43:20,033 adding 'pyranges/example_data/f2.bed' 2023-05-19T16:43:20,055 adding 'pyranges/example_data/gencode_human.gtf.gz' 2023-05-19T16:43:20,089 adding 'pyranges/example_data/lamina.bed' 2023-05-19T16:43:20,106 adding 'pyranges/example_data/ucsc_human.bed.gz' 2023-05-19T16:43:20,112 adding 'pyranges/methods/__init__.py' 2023-05-19T16:43:20,115 adding 'pyranges/methods/attr.py' 2023-05-19T16:43:20,117 adding 'pyranges/methods/boundaries.py' 2023-05-19T16:43:20,120 adding 'pyranges/methods/call.py' 2023-05-19T16:43:20,123 adding 'pyranges/methods/cluster.py' 2023-05-19T16:43:20,125 adding 'pyranges/methods/concat.py' 2023-05-19T16:43:20,128 adding 'pyranges/methods/coverage.py' 2023-05-19T16:43:20,131 adding 'pyranges/methods/drop.py' 2023-05-19T16:43:20,133 adding 'pyranges/methods/drop_duplicates.py' 2023-05-19T16:43:20,136 adding 'pyranges/methods/getitem.py' 2023-05-19T16:43:20,139 adding 'pyranges/methods/init.py' 2023-05-19T16:43:20,142 adding 'pyranges/methods/insert.py' 2023-05-19T16:43:20,145 adding 'pyranges/methods/intersection.py' 2023-05-19T16:43:20,147 adding 'pyranges/methods/itergrs.py' 2023-05-19T16:43:20,150 adding 'pyranges/methods/join.py' 2023-05-19T16:43:20,154 adding 'pyranges/methods/k_nearest.py' 2023-05-19T16:43:20,156 adding 'pyranges/methods/max_disjoint.py' 2023-05-19T16:43:20,159 adding 'pyranges/methods/merge.py' 2023-05-19T16:43:20,162 adding 'pyranges/methods/nearest.py' 2023-05-19T16:43:20,165 adding 'pyranges/methods/new_position.py' 2023-05-19T16:43:20,167 adding 'pyranges/methods/sort.py' 2023-05-19T16:43:20,170 adding 'pyranges/methods/spliced_subsequence.py' 2023-05-19T16:43:20,173 adding 'pyranges/methods/split.py' 2023-05-19T16:43:20,176 adding 'pyranges/methods/statistics.py' 2023-05-19T16:43:20,179 adding 'pyranges/methods/subsequence.py' 2023-05-19T16:43:20,182 adding 'pyranges/methods/subtraction.py' 2023-05-19T16:43:20,184 adding 'pyranges/methods/summary.py' 2023-05-19T16:43:20,187 adding 'pyranges/methods/to_rle.py' 2023-05-19T16:43:20,189 adding 'pyranges/methods/windows.py' 2023-05-19T16:43:20,197 adding 'tests/.fuse_hidden0000017200000002' 2023-05-19T16:43:20,200 adding 'tests/helpers.py' 2023-05-19T16:43:20,203 adding 'tests/hi' 2023-05-19T16:43:20,206 adding 'tests/property_based/__init__.py' 2023-05-19T16:43:20,210 adding 'tests/property_based/hypothesis_helper.py' 2023-05-19T16:43:20,215 adding 'tests/property_based/test_binary.py' 2023-05-19T16:43:20,218 adding 'tests/property_based/test_do_not_error.py' 2023-05-19T16:43:20,222 adding 'tests/property_based/test_unary.py' 2023-05-19T16:43:20,227 adding 'tests/unit/__init__.py' 2023-05-19T16:43:20,229 adding 'tests/unit/chip_10.bed' 2023-05-19T16:43:20,232 adding 'tests/unit/conftest.py' 2023-05-19T16:43:20,235 adding 'tests/unit/f1.bed' 2023-05-19T16:43:20,237 adding 'tests/unit/f2.bed' 2023-05-19T16:43:20,240 adding 'tests/unit/hi' 2023-05-19T16:43:20,243 adding 'tests/unit/k_nearest.py' 2023-05-19T16:43:20,245 adding 'tests/unit/statistics.py' 2023-05-19T16:43:20,248 adding 'tests/unit/test_change_chromosome_custom.py' 2023-05-19T16:43:20,250 adding 'tests/unit/test_concat.py' 2023-05-19T16:43:20,253 adding 'tests/unit/test_count_overlaps.py' 2023-05-19T16:43:20,256 adding 'tests/unit/test_genomicfeatures.py' 2023-05-19T16:43:20,259 adding 'tests/unit/test_getset_attr.py' 2023-05-19T16:43:20,262 adding 'tests/unit/test_guessers.py' 2023-05-19T16:43:20,264 adding 'tests/unit/test_io.py' 2023-05-19T16:43:20,267 adding 'tests/unit/test_pickle.py' 2023-05-19T16:43:20,269 adding 'tests/unit/test_stranded.py' 2023-05-19T16:43:20,273 adding 'tests/unit/data/test_data.py' 2023-05-19T16:43:20,276 adding 'tests/unit/df_dict_mismatch/test_mismatch.py' 2023-05-19T16:43:20,280 adding 'tests/unit/getitem/test_getitem.py' 2023-05-19T16:43:20,284 adding 'tests/unit/join/test_join.py' 2023-05-19T16:43:20,287 adding 'tests/unit/new_position/test_new_position.py' 2023-05-19T16:43:20,291 adding 'tests/unit/out/test_out.py' 2023-05-19T16:43:20,295 adding 'tests/unit/slack/test_slack.py' 2023-05-19T16:43:20,301 adding 'tests/unit/test_data/ensembl.gtf' 2023-05-19T16:43:20,307 adding 'tests/unit/test_data/gencode.gff3' 2023-05-19T16:43:20,331 adding 'tests/unit/test_data/test_sorted.bam' 2023-05-19T16:43:20,512 adding 'tests/unit/test_data/test_sorted.bam.bai' 2023-05-19T16:43:20,550 adding 'tests/unit/unit/__init__.py' 2023-05-19T16:43:20,553 adding 'tests/unit/unstrand/test_unstrand.py' 2023-05-19T16:43:20,557 adding 'tests/unit/windows/test_windows.py' 2023-05-19T16:43:20,559 adding 'pyranges-0.0.127.dist-info/LICENSE' 2023-05-19T16:43:20,564 adding 'pyranges-0.0.127.dist-info/METADATA' 2023-05-19T16:43:20,566 adding 'pyranges-0.0.127.dist-info/WHEEL' 2023-05-19T16:43:20,568 adding 'pyranges-0.0.127.dist-info/top_level.txt' 2023-05-19T16:43:20,574 adding 'pyranges-0.0.127.dist-info/RECORD' 2023-05-19T16:43:20,638 removing build/bdist.linux-armv7l/wheel 2023-05-19T16:43:20,973 Building wheel for pyranges (pyproject.toml): finished with status 'done' 2023-05-19T16:43:21,070 Created wheel for pyranges: filename=pyranges-0.0.127-py3-none-any.whl size=1467378 sha256=d9bc1276c3e5819a81518e66e604c01d302433ee96df68aa2f639b177ebea1d9 2023-05-19T16:43:21,072 Stored in directory: /tmp/pip-ephem-wheel-cache-9h7lm0g2/wheels/25/d9/14/e15ba1478222842d5eb259c6b98888020988fcb3d687d567a7 2023-05-19T16:43:21,113 Successfully built pyranges 2023-05-19T16:43:21,253 Removed build tracker: '/tmp/pip-build-tracker-5ndlciio'