2023-05-21T01:45:29,595 Created temporary directory: /tmp/pip-build-tracker-k_0enu7y 2023-05-21T01:45:29,596 Initialized build tracking at /tmp/pip-build-tracker-k_0enu7y 2023-05-21T01:45:29,597 Created build tracker: /tmp/pip-build-tracker-k_0enu7y 2023-05-21T01:45:29,597 Entered build tracker: /tmp/pip-build-tracker-k_0enu7y 2023-05-21T01:45:29,597 Created temporary directory: /tmp/pip-wheel-2r7pi33n 2023-05-21T01:45:29,600 Created temporary directory: /tmp/pip-ephem-wheel-cache-1tivl52z 2023-05-21T01:45:29,626 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-21T01:45:29,629 2 location(s) to search for versions of pgenlib: 2023-05-21T01:45:29,629 * https://pypi.org/simple/pgenlib/ 2023-05-21T01:45:29,629 * https://www.piwheels.org/simple/pgenlib/ 2023-05-21T01:45:29,630 Fetching project page and analyzing links: https://pypi.org/simple/pgenlib/ 2023-05-21T01:45:29,630 Getting page https://pypi.org/simple/pgenlib/ 2023-05-21T01:45:29,632 Found index url https://pypi.org/simple/ 2023-05-21T01:45:29,681 Fetched page https://pypi.org/simple/pgenlib/ as application/vnd.pypi.simple.v1+json 2023-05-21T01:45:29,689 Found link https://files.pythonhosted.org/packages/d9/cc/f3bbaa8da897e9a04e1a885183a0c533ba563bb3a1dbfba6680704473336/Pgenlib-0.81.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.1 2023-05-21T01:45:29,689 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/22/06/d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02/Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,690 Found link https://files.pythonhosted.org/packages/6d/f7/c286a64ec213ea42bfa67b20ce1271b0b8699ac3880854657f8ed1620759/Pgenlib-0.81.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.2 2023-05-21T01:45:29,690 Found link https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.3 2023-05-21T01:45:29,691 Found link https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.0 2023-05-21T01:45:29,691 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/2b/91/1d7b72b61c624763fc29c3e54df394bc611080a3dc2176af2332257e8fac/Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,692 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/30/d1/166d130225f03033df8ca688ef54dca200fb3de3419f0edc914afd21a3a7/Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,692 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/be/d5/85dc2412def8644cccfafe6722e7d1c5411c9725366156eef4aec843ba95/Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,692 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a1/74/ade2137ac2eee449bfa959f5808cc6d1bdc6cec4cd9b4fabcd416246a889/Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,692 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/9a/65/79600073fc41faaa2b008b1bedf9233125aeaad404a973e563810268a626/Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,692 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/29/20/876e704d95b3ca26e7a554532385d52f2133cd99d2f132a29fb16062cb4d/Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,693 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b5/32/8dbf9cb1a3a3a6950deab99e0515a753273396ef1770b5d2491e1f8eaba9/Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,693 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/fc/24/2e6994141f63fd6c129b0bd0bbc9ef8df91e98b171a5ae0a5aeb7a01532c/Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,693 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/8e/3a2eef4571d6d2c8604a3810c3e092c9e145839934dde6c91ecf4be63be8/Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,694 Found link https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.1 2023-05-21T01:45:29,694 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/0a/86ce9fc2291a83b63817ac43b8f2924af9c02746b4f20c44142ce9f8a4ce/Pgenlib-0.83.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,694 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/73/924728769d9bd1e738190588c1ac1c2fc53d65641565c013ac1d79fe8403/Pgenlib-0.83.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,694 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/3b/22/29e510423558b22e98374496ef7c8b178c5f4d47f6e9c1fe4999c6ee8761/Pgenlib-0.83.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,695 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7c/a9/5987776baf730f0f8e8b44b7c358f8b2b44cb24f9fa938b9f6dcb8724f69/Pgenlib-0.83.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,695 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/88/64/2df132fbea4b3aad80aab161c90e9f24e5d494917605b1f01f522950d07e/Pgenlib-0.83.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,695 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/02/4e/df2808d3f87f77419e0abb68544f0f220c261a7eed6433c7150eff1fec49/Pgenlib-0.83.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,695 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c1/14/00aaf84a05ae9b25f51af36f285614e42c557860051fe16ef0860b03b3c6/Pgenlib-0.83.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,695 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/a8/832b27db6e563e46c40e59714a0adf09959d67d964feb5ef84b51f89a0b9/Pgenlib-0.83.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,695 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/5b/ba/ba9401daf559588f84aa8ff82b55ce1aac6339a69028a3b14748af74539f/Pgenlib-0.83.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,696 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b6/d7/6cf098fd410209d749e41610daeb12b440ea603a45f787a49474461c6043/Pgenlib-0.83.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,696 Found link https://files.pythonhosted.org/packages/b5/f4/6cd16a7f543438c5910cec68bd5d49d231152753f3f53f4dda1322305522/Pgenlib-0.83.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.83.0 2023-05-21T01:45:29,697 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/16/24/5e5f3f751fc014e67c567073089e5ff22887c890ddcb33b2eee234b2ff66/Pgenlib-0.90.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,697 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/43/45/b23b200529cc05e27de60c6623e3c272f3babacd46ba7ca04f8ba8cee212/Pgenlib-0.90.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,697 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/af/14f03aa5e6568810347aef280eb57b82a5a45e03f33c9653d56685a5157c/Pgenlib-0.90.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,697 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/59/d6/7157c61da0ebb0d2f05ba178ef1c57e567054192e47153ea29952de377c9/Pgenlib-0.90.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,697 Skipping link: No binaries permitted for pgenlib: 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https://files.pythonhosted.org/packages/f3/b0/01e1c04e3fe156252d1ebb82f362da5642a128d72c5a67c481b26986d450/Pgenlib-0.90.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,698 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/05/cc/185166c604f18f1d60291fd0d407d6c02b26e712af8e39bfaabfe9be57ce/Pgenlib-0.90.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,698 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/45/60/dd584321eedc419f7b1aee92fc15110070714ca949ee012bf5dddffec6cf/Pgenlib-0.90.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,699 Found link https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.0 2023-05-21T01:45:29,699 Fetching project page and analyzing links: https://www.piwheels.org/simple/pgenlib/ 2023-05-21T01:45:29,700 Getting page https://www.piwheels.org/simple/pgenlib/ 2023-05-21T01:45:29,701 Found index url https://www.piwheels.org/simple/ 2023-05-21T01:45:29,865 Fetched page https://www.piwheels.org/simple/pgenlib/ as text/html 2023-05-21T01:45:29,870 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv7l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,870 Skipping link: No binaries permitted for pgenlib: 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https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv7l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,872 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv6l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-05-21T01:45:29,872 Skipping link: not a file: https://www.piwheels.org/simple/pgenlib/ 2023-05-21T01:45:29,873 Skipping link: not a file: https://pypi.org/simple/pgenlib/ 2023-05-21T01:45:29,891 Given no hashes to check 1 links for project 'pgenlib': discarding no candidates 2023-05-21T01:45:29,908 Collecting pgenlib==0.90.0 2023-05-21T01:45:29,910 Created temporary directory: /tmp/pip-unpack-fkmhmm94 2023-05-21T01:45:29,953 Downloading Pgenlib-0.90.0.tar.gz (1.1 MB) 2023-05-21T01:45:30,632 Added pgenlib==0.90.0 from https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz to build tracker '/tmp/pip-build-tracker-k_0enu7y' 2023-05-21T01:45:30,638 Created temporary directory: /tmp/pip-build-env-bh5qe1oh 2023-05-21T01:45:30,648 Installing build dependencies: started 2023-05-21T01:45:30,649 Running command pip subprocess to install build dependencies 2023-05-21T01:45:31,838 Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-05-21T01:45:32,186 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-21T01:45:33,836 Collecting setuptools 2023-05-21T01:45:33,916 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB) 2023-05-21T01:45:34,179 Collecting wheel 2023-05-21T01:45:34,197 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-05-21T01:45:34,309 Collecting oldest-supported-numpy>=2022.8.16 2023-05-21T01:45:34,325 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2022.11.19-py3-none-any.whl (4.9 kB) 2023-05-21T01:45:35,675 Collecting Cython>=0.29.21 2023-05-21T01:45:36,039 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.34-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-05-21T01:45:37,664 Collecting numpy==1.19.3 (from oldest-supported-numpy>=2022.8.16) 2023-05-21T01:45:38,381 Using cached https://www.piwheels.org/simple/numpy/numpy-1.19.3-cp39-cp39-linux_armv7l.whl (10.5 MB) 2023-05-21T01:45:40,236 Installing collected packages: wheel, setuptools, numpy, Cython, oldest-supported-numpy 2023-05-21T01:45:40,460 Creating /tmp/pip-build-env-bh5qe1oh/overlay/bin 2023-05-21T01:45:40,462 changing mode of /tmp/pip-build-env-bh5qe1oh/overlay/bin/wheel to 755 2023-05-21T01:45:49,072 changing mode of /tmp/pip-build-env-bh5qe1oh/overlay/bin/f2py to 755 2023-05-21T01:45:49,075 changing mode of /tmp/pip-build-env-bh5qe1oh/overlay/bin/f2py3 to 755 2023-05-21T01:45:49,077 changing mode of /tmp/pip-build-env-bh5qe1oh/overlay/bin/f2py3.9 to 755 2023-05-21T01:45:51,757 changing mode of /tmp/pip-build-env-bh5qe1oh/overlay/bin/cygdb to 755 2023-05-21T01:45:51,760 changing mode of /tmp/pip-build-env-bh5qe1oh/overlay/bin/cython to 755 2023-05-21T01:45:51,762 changing mode of /tmp/pip-build-env-bh5qe1oh/overlay/bin/cythonize to 755 2023-05-21T01:45:51,804 Successfully installed Cython-0.29.34 numpy-1.19.3 oldest-supported-numpy-2022.11.19 setuptools-67.8.0 wheel-0.40.0 2023-05-21T01:45:52,182 Installing build dependencies: finished with status 'done' 2023-05-21T01:45:52,187 Getting requirements to build wheel: started 2023-05-21T01:45:52,188 Running command Getting requirements to build wheel 2023-05-21T01:45:57,532 Compiling src/pgenlib/pgenlib.pyx because it depends on /tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-21T01:45:57,532 [1/1] Cythonizing src/pgenlib/pgenlib.pyx 2023-05-21T01:45:57,603 running egg_info 2023-05-21T01:45:57,612 writing src/Pgenlib.egg-info/PKG-INFO 2023-05-21T01:45:57,614 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-05-21T01:45:57,617 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-05-21T01:45:57,676 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-05-21T01:45:57,693 reading manifest template 'MANIFEST.in' 2023-05-21T01:45:57,709 adding license file 'LICENSE' 2023-05-21T01:45:57,719 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-05-21T01:45:58,057 Getting requirements to build wheel: finished with status 'done' 2023-05-21T01:45:58,070 Created temporary directory: /tmp/pip-modern-metadata-wdv393q_ 2023-05-21T01:45:58,072 Preparing metadata (pyproject.toml): started 2023-05-21T01:45:58,074 Running command Preparing metadata (pyproject.toml) 2023-05-21T01:45:59,610 running dist_info 2023-05-21T01:45:59,633 creating /tmp/pip-modern-metadata-wdv393q_/Pgenlib.egg-info 2023-05-21T01:45:59,638 writing /tmp/pip-modern-metadata-wdv393q_/Pgenlib.egg-info/PKG-INFO 2023-05-21T01:45:59,640 writing dependency_links to /tmp/pip-modern-metadata-wdv393q_/Pgenlib.egg-info/dependency_links.txt 2023-05-21T01:45:59,642 writing top-level names to /tmp/pip-modern-metadata-wdv393q_/Pgenlib.egg-info/top_level.txt 2023-05-21T01:45:59,643 writing manifest file '/tmp/pip-modern-metadata-wdv393q_/Pgenlib.egg-info/SOURCES.txt' 2023-05-21T01:45:59,669 reading manifest file '/tmp/pip-modern-metadata-wdv393q_/Pgenlib.egg-info/SOURCES.txt' 2023-05-21T01:45:59,671 reading manifest template 'MANIFEST.in' 2023-05-21T01:45:59,686 adding license file 'LICENSE' 2023-05-21T01:45:59,694 writing manifest file '/tmp/pip-modern-metadata-wdv393q_/Pgenlib.egg-info/SOURCES.txt' 2023-05-21T01:45:59,695 creating '/tmp/pip-modern-metadata-wdv393q_/Pgenlib-0.90.0.dist-info' 2023-05-21T01:45:59,917 Preparing metadata (pyproject.toml): finished with status 'done' 2023-05-21T01:45:59,924 Source in /tmp/pip-wheel-2r7pi33n/pgenlib_3450c45cc27443b793922a3de5dbc25f has version 0.90.0, which satisfies requirement pgenlib==0.90.0 from https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz 2023-05-21T01:45:59,924 Removed pgenlib==0.90.0 from https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz from build tracker '/tmp/pip-build-tracker-k_0enu7y' 2023-05-21T01:45:59,930 Created temporary directory: /tmp/pip-unpack-a2198t71 2023-05-21T01:45:59,931 Building wheels for collected packages: pgenlib 2023-05-21T01:45:59,935 Created temporary directory: /tmp/pip-wheel-a70jdmsc 2023-05-21T01:45:59,936 Destination directory: /tmp/pip-wheel-a70jdmsc 2023-05-21T01:45:59,938 Building wheel for pgenlib (pyproject.toml): started 2023-05-21T01:45:59,939 Running command Building wheel for pgenlib (pyproject.toml) 2023-05-21T01:46:01,410 running bdist_wheel 2023-05-21T01:46:01,434 running build 2023-05-21T01:46:01,434 running build_clib 2023-05-21T01:46:01,445 building 'clib' library 2023-05-21T01:46:01,447 creating build 2023-05-21T01:46:01,448 creating build/temp.linux-armv7l-cpython-39 2023-05-21T01:46:01,449 creating build/temp.linux-armv7l-cpython-39/src 2023-05-21T01:46:01,449 creating build/temp.linux-armv7l-cpython-39/src/plink2 2023-05-21T01:46:01,450 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate 2023-05-21T01:46:01,451 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib 2023-05-21T01:46:01,452 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm 2023-05-21T01:46:01,453 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86 2023-05-21T01:46:01,454 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd 2023-05-21T01:46:01,454 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib 2023-05-21T01:46:01,455 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common 2023-05-21T01:46:01,456 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress 2023-05-21T01:46:01,457 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress 2023-05-21T01:46:01,458 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/adler32.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/adler32.o 2023-05-21T01:46:02,227 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/arm/arm_cpu_features.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm/arm_cpu_features.o 2023-05-21T01:46:02,450 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/crc32.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/crc32.o 2023-05-21T01:46:03,132 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_compress.o 2023-05-21T01:46:08,473 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_decompress.o 2023-05-21T01:46:09,412 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_compress.o 2023-05-21T01:46:09,540 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_decompress.o 2023-05-21T01:46:09,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/utils.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/utils.o 2023-05-21T01:46:09,847 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/x86/x86_cpu_features.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86/x86_cpu_features.o 2023-05-21T01:46:09,966 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_compress.o 2023-05-21T01:46:10,094 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_decompress.o 2023-05-21T01:46:10,236 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/debug.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/debug.o 2023-05-21T01:46:10,302 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/entropy_common.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/entropy_common.o 2023-05-21T01:46:10,650 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/error_private.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/error_private.o 2023-05-21T01:46:10,795 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/fse_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/fse_decompress.o 2023-05-21T01:46:11,680 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/pool.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/pool.o 2023-05-21T01:46:11,843 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/threading.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/threading.o 2023-05-21T01:46:11,911 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/xxhash.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/xxhash.o 2023-05-21T01:46:12,835 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/zstd_common.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/zstd_common.o 2023-05-21T01:46:13,029 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/fse_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/fse_compress.o 2023-05-21T01:46:13,814 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/hist.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/hist.o 2023-05-21T01:46:14,087 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/huf_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/huf_compress.o 2023-05-21T01:46:15,648 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress.o 2023-05-21T01:46:22,204 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_literals.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_literals.o 2023-05-21T01:46:22,538 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_sequences.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_sequences.o 2023-05-21T01:46:23,275 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_superblock.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_superblock.o 2023-05-21T01:46:24,188 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_double_fast.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_double_fast.o 2023-05-21T01:46:31,873 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_fast.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_fast.o 2023-05-21T01:46:39,542 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_lazy.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_lazy.o 2023-05-21T01:47:09,638 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_ldm.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_ldm.o 2023-05-21T01:47:10,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_opt.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_opt.o 2023-05-21T01:47:17,058 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstdmt_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstdmt_compress.o 2023-05-21T01:47:18,594 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/huf_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/huf_decompress.o 2023-05-21T01:47:21,901 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_ddict.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_ddict.o 2023-05-21T01:47:22,243 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress.o 2023-05-21T01:47:24,217 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/zstd/lib -Isrc/plink2/zstd/lib/common -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress_block.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2023-05-21T01:47:29,916 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libclib.a build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/adler32.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm/arm_cpu_features.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/crc32.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/utils.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86/x86_cpu_features.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/debug.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/entropy_common.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/error_private.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/fse_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/pool.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/threading.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/xxhash.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/zstd_common.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/fse_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/hist.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/huf_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_literals.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_sequences.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_superblock.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_double_fast.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_fast.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_lazy.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_ldm.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_opt.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstdmt_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/huf_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_ddict.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2023-05-21T01:47:30,083 running build_ext 2023-05-21T01:47:30,086 building 'pgenlib' extension 2023-05-21T01:47:30,087 creating build/temp.linux-armv7l-cpython-39/src/pgenlib 2023-05-21T01:47:30,088 creating build/temp.linux-armv7l-cpython-39/src/plink2/include 2023-05-21T01:47:30,090 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/pgenlib/pgenlib.cpp -o build/temp.linux-armv7l-cpython-39/src/pgenlib/pgenlib.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:47:30,402 In file included from /tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2023-05-21T01:47:30,403 from /tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-21T01:47:30,403 from /tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-21T01:47:30,403 from src/pgenlib/pgenlib.cpp:810: 2023-05-21T01:47:30,403 /tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-21T01:47:30,404 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-21T01:47:30,404 | ^~~~~~~ 2023-05-21T01:47:30,471 src/pgenlib/pgenlib.cpp:1007: warning: "likely" redefined 2023-05-21T01:47:30,471 1007 | #define likely(x) __builtin_expect(!!(x), 1) 2023-05-21T01:47:30,471 | 2023-05-21T01:47:30,471 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2023-05-21T01:47:30,471 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2023-05-21T01:47:30,472 from src/pgenlib/pgenlib.cpp:815: 2023-05-21T01:47:30,472 src/pgenlib/../plink2/include/plink2_base.h:252: note: this is the location of the previous definition 2023-05-21T01:47:30,472 252 | # define likely(expr) __builtin_expect(!!(expr), 1) 2023-05-21T01:47:30,472 | 2023-05-21T01:47:30,472 src/pgenlib/pgenlib.cpp:1008: warning: "unlikely" redefined 2023-05-21T01:47:30,472 1008 | #define unlikely(x) __builtin_expect(!!(x), 0) 2023-05-21T01:47:30,472 | 2023-05-21T01:47:30,473 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2023-05-21T01:47:30,473 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2023-05-21T01:47:30,473 from src/pgenlib/pgenlib.cpp:815: 2023-05-21T01:47:30,473 src/pgenlib/../plink2/include/plink2_base.h:253: note: this is the location of the previous definition 2023-05-21T01:47:30,473 253 | # define unlikely(expr) __builtin_expect(!!(expr), 0) 2023-05-21T01:47:30,473 | 2023-05-21T01:47:31,503 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read*)’: 2023-05-21T01:47:31,503 src/pgenlib/pgenlib.cpp:8539:55: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,503 8539 | __pyx_t_9 = (((__pyx_v_geno_int_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,504 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,531 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages*)’: 2023-05-21T01:47:31,531 src/pgenlib/pgenlib.cpp:9193:55: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,531 9193 | __pyx_t_9 = (((__pyx_v_floatarr_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,532 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,557 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int)’: 2023-05-21T01:47:31,557 src/pgenlib/pgenlib.cpp:9752:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,557 9752 | __pyx_t_8 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,557 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,580 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, PyArrayObject*, int)’: 2023-05-21T01:47:31,580 src/pgenlib/pgenlib.cpp:10247:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,581 10247 | __pyx_t_8 = (((__pyx_v_allele_int32_out->dimensions[0]) < (2 * __pyx_v_subset_size)) != 0); 2023-05-21T01:47:31,581 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,583 src/pgenlib/pgenlib.cpp:10303:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,583 10303 | __pyx_t_8 = (((__pyx_v_phasepresent_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,583 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,603 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal8(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal8*)’: 2023-05-21T01:47:31,603 src/pgenlib/pgenlib.cpp:10793:58: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,603 10793 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,604 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,606 src/pgenlib/pgenlib.cpp:10849:58: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,606 10849 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,606 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,614 src/pgenlib/pgenlib.cpp:11074:56: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,614 11074 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,614 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,617 src/pgenlib/pgenlib.cpp:11130:56: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,617 11130 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,617 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,630 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal32(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal32*)’: 2023-05-21T01:47:31,630 src/pgenlib/pgenlib.cpp:11729:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,631 11729 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,631 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,633 src/pgenlib/pgenlib.cpp:11785:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,633 11785 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,633 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,641 src/pgenlib/pgenlib.cpp:12010:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,641 12010 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,641 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,644 src/pgenlib/pgenlib.cpp:12066:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,644 12066 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,644 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,657 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal64(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal64*)’: 2023-05-21T01:47:31,658 src/pgenlib/pgenlib.cpp:12665:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,658 12665 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,658 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,660 src/pgenlib/pgenlib.cpp:12721:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,661 12721 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,661 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,669 src/pgenlib/pgenlib.cpp:12946:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,669 12946 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,669 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,672 src/pgenlib/pgenlib.cpp:13002:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,672 13002 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,672 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,712 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal8(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal8*)’: 2023-05-21T01:47:31,712 src/pgenlib/pgenlib.cpp:14154:58: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,712 14154 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,712 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,715 src/pgenlib/pgenlib.cpp:14210:58: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,715 14210 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,715 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,723 src/pgenlib/pgenlib.cpp:14451:56: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,724 14451 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,724 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,726 src/pgenlib/pgenlib.cpp:14507:56: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,727 14507 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,727 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,745 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal32*)’: 2023-05-21T01:47:31,745 src/pgenlib/pgenlib.cpp:15202:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,745 15202 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,745 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,748 src/pgenlib/pgenlib.cpp:15258:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,748 15258 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,748 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,756 src/pgenlib/pgenlib.cpp:15499:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,757 15499 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,757 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,765 src/pgenlib/pgenlib.cpp:15555:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,765 15555 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,765 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,783 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal64*)’: 2023-05-21T01:47:31,783 src/pgenlib/pgenlib.cpp:16250:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,783 16250 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,783 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,786 src/pgenlib/pgenlib.cpp:16306:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,786 16306 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,786 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,794 src/pgenlib/pgenlib.cpp:16547:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,795 16547 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,795 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,797 src/pgenlib/pgenlib.cpp:16603:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,797 16603 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,798 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,846 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_range*)’: 2023-05-21T01:47:31,846 src/pgenlib/pgenlib.cpp:17948:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,847 17948 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,847 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,849 src/pgenlib/pgenlib.cpp:18004:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,849 18004 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[1]) < (2 * __pyx_v_subset_size)) != 0); 2023-05-21T01:47:31,849 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,858 src/pgenlib/pgenlib.cpp:18241:60: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,858 18241 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[0]) < (2 * __pyx_v_subset_size)) != 0); 2023-05-21T01:47:31,858 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,861 src/pgenlib/pgenlib.cpp:18297:60: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,861 18297 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,861 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,894 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_list*)’: 2023-05-21T01:47:31,894 src/pgenlib/pgenlib.cpp:19418:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,894 19418 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,895 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,897 src/pgenlib/pgenlib.cpp:19474:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,897 19474 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[1]) < (2 * __pyx_v_subset_size)) != 0); 2023-05-21T01:47:31,897 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,905 src/pgenlib/pgenlib.cpp:19715:60: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,905 19715 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[0]) < (2 * __pyx_v_subset_size)) != 0); 2023-05-21T01:47:31,906 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,908 src/pgenlib/pgenlib.cpp:19771:60: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,908 19771 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,908 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,947 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range*)’: 2023-05-21T01:47:31,947 src/pgenlib/pgenlib.cpp:20935:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,947 20935 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,947 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,949 src/pgenlib/pgenlib.cpp:20991:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,950 20991 | __pyx_t_10 = (((__pyx_v_phasepresent_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,950 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,952 src/pgenlib/pgenlib.cpp:21047:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,953 21047 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[1]) < (2 * __pyx_v_subset_size)) != 0); 2023-05-21T01:47:31,953 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,955 src/pgenlib/pgenlib.cpp:21103:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,955 21103 | __pyx_t_10 = (((__pyx_v_phasepresent_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,956 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,987 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list*)’: 2023-05-21T01:47:31,987 src/pgenlib/pgenlib.cpp:21798:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,988 21798 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,988 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,990 src/pgenlib/pgenlib.cpp:21854:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,990 21854 | __pyx_t_12 = (((__pyx_v_phasepresent_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:31,990 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,993 src/pgenlib/pgenlib.cpp:21910:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,993 21910 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[1]) < (2 * __pyx_v_subset_size)) != 0); 2023-05-21T01:47:31,993 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:31,996 src/pgenlib/pgenlib.cpp:21966:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:31,996 21966 | __pyx_t_12 = (((__pyx_v_phasepresent_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:31,996 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:32,063 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal32*)’: 2023-05-21T01:47:32,063 src/pgenlib/pgenlib.cpp:23725:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:32,063 23725 | __pyx_t_6 = (((__pyx_v_floatarr_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:32,063 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:32,066 src/pgenlib/pgenlib.cpp:23781:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:32,066 23781 | __pyx_t_6 = (((__pyx_v_floatarr_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:32,066 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:32,080 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal64*)’: 2023-05-21T01:47:32,080 src/pgenlib/pgenlib.cpp:24242:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:32,081 24242 | __pyx_t_6 = (((__pyx_v_floatarr_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-05-21T01:47:32,081 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:47:32,083 src/pgenlib/pgenlib.cpp:24298:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-21T01:47:32,083 24298 | __pyx_t_6 = (((__pyx_v_floatarr_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-05-21T01:47:32,083 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-05-21T01:48:02,575 At global scope: 2023-05-21T01:48:02,575 cc1plus: note: unrecognized command-line option ‘-Wno-macro-redefined’ may have been intended to silence earlier diagnostics 2023-05-21T01:48:05,403 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/pgenlib_misc.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_misc.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:08,535 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/pgenlib_read.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_read.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:21,669 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/pgenlib_write.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_write.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:24,868 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/plink2_base.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_base.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:25,278 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/plink2_bgzf.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bgzf.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:26,582 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/plink2_bits.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bits.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:28,307 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/plink2_string.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_string.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:34,029 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/plink2_text.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_text.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:35,748 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/plink2_thread.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_thread.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:36,165 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/include/plink2_zstfile.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_zstfile.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:36,508 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/pgenlib_ffi_support.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/pgenlib_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:37,796 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-bh5qe1oh/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/plink2/pvar_ffi_support.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/pvar_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DSTATIC_ZSTD -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-05-21T01:48:38,897 creating build/lib.linux-armv7l-cpython-39 2023-05-21T01:48:38,898 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pgenlib/pgenlib.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_misc.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_read.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_write.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_base.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bgzf.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bits.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_string.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_text.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_thread.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_zstfile.o build/temp.linux-armv7l-cpython-39/src/plink2/pgenlib_ffi_support.o build/temp.linux-armv7l-cpython-39/src/plink2/pvar_ffi_support.o -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -lclib -o build/lib.linux-armv7l-cpython-39/pgenlib.cpython-39-arm-linux-gnueabihf.so -std=c++98 2023-05-21T01:48:39,552 installing to build/bdist.linux-armv7l/wheel 2023-05-21T01:48:39,553 running install 2023-05-21T01:48:39,579 running install_lib 2023-05-21T01:48:39,588 creating build/bdist.linux-armv7l 2023-05-21T01:48:39,588 creating build/bdist.linux-armv7l/wheel 2023-05-21T01:48:39,590 copying build/lib.linux-armv7l-cpython-39/pgenlib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-05-21T01:48:39,674 running install_egg_info 2023-05-21T01:48:39,706 running egg_info 2023-05-21T01:48:39,712 writing src/Pgenlib.egg-info/PKG-INFO 2023-05-21T01:48:39,714 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-05-21T01:48:39,716 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-05-21T01:48:39,733 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-05-21T01:48:39,749 reading manifest template 'MANIFEST.in' 2023-05-21T01:48:39,764 adding license file 'LICENSE' 2023-05-21T01:48:39,774 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-05-21T01:48:39,776 Copying src/Pgenlib.egg-info to build/bdist.linux-armv7l/wheel/Pgenlib-0.90.0-py3.9.egg-info 2023-05-21T01:48:39,785 running install_scripts 2023-05-21T01:48:39,830 creating build/bdist.linux-armv7l/wheel/Pgenlib-0.90.0.dist-info/WHEEL 2023-05-21T01:48:39,833 creating '/tmp/pip-wheel-a70jdmsc/.tmp-xb1gd4zm/Pgenlib-0.90.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-21T01:48:40,893 adding 'pgenlib.cpython-39-arm-linux-gnueabihf.so' 2023-05-21T01:48:40,930 adding 'Pgenlib-0.90.0.dist-info/LICENSE' 2023-05-21T01:48:40,932 adding 'Pgenlib-0.90.0.dist-info/METADATA' 2023-05-21T01:48:40,933 adding 'Pgenlib-0.90.0.dist-info/WHEEL' 2023-05-21T01:48:40,934 adding 'Pgenlib-0.90.0.dist-info/top_level.txt' 2023-05-21T01:48:40,935 adding 'Pgenlib-0.90.0.dist-info/RECORD' 2023-05-21T01:48:40,957 removing build/bdist.linux-armv7l/wheel 2023-05-21T01:48:41,123 Building wheel for pgenlib (pyproject.toml): finished with status 'done' 2023-05-21T01:48:41,167 Created wheel for pgenlib: filename=Pgenlib-0.90.0-cp39-cp39-linux_armv7l.whl size=1980705 sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd 2023-05-21T01:48:41,168 Stored in directory: /tmp/pip-ephem-wheel-cache-1tivl52z/wheels/99/c4/8a/06e68cc54e47d417193d9ca132ddbce88047eda11f7429a2a5 2023-05-21T01:48:41,180 Successfully built pgenlib 2023-05-21T01:48:41,235 Removed build tracker: '/tmp/pip-build-tracker-k_0enu7y'