2023-05-22T17:37:50,249 Created temporary directory: /tmp/pip-build-tracker-8eyh6ldp 2023-05-22T17:37:50,252 Initialized build tracking at /tmp/pip-build-tracker-8eyh6ldp 2023-05-22T17:37:50,252 Created build tracker: /tmp/pip-build-tracker-8eyh6ldp 2023-05-22T17:37:50,252 Entered build tracker: /tmp/pip-build-tracker-8eyh6ldp 2023-05-22T17:37:50,254 Created temporary directory: /tmp/pip-wheel-qdu2oul8 2023-05-22T17:37:50,262 Created temporary directory: /tmp/pip-ephem-wheel-cache-uznp_rdh 2023-05-22T17:37:50,315 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-22T17:37:50,323 2 location(s) to search for versions of sequana-pacbio-qc: 2023-05-22T17:37:50,323 * https://pypi.org/simple/sequana-pacbio-qc/ 2023-05-22T17:37:50,323 * https://www.piwheels.org/simple/sequana-pacbio-qc/ 2023-05-22T17:37:50,324 Fetching project page and analyzing links: https://pypi.org/simple/sequana-pacbio-qc/ 2023-05-22T17:37:50,325 Getting page https://pypi.org/simple/sequana-pacbio-qc/ 2023-05-22T17:37:50,330 Found index url https://pypi.org/simple/ 2023-05-22T17:37:50,517 Fetched page https://pypi.org/simple/sequana-pacbio-qc/ as application/vnd.pypi.simple.v1+json 2023-05-22T17:37:50,521 Found link https://files.pythonhosted.org/packages/69/a4/21cd9f8edb0c96b180d6bb078baba01dcd8a1eb5ec6b8e17156092f51b05/sequana_pacbio_qc-0.9.0.tar.gz (from https://pypi.org/simple/sequana-pacbio-qc/), version: 0.9.0 2023-05-22T17:37:50,521 Found link https://files.pythonhosted.org/packages/14/55/46905d4bfd9030b4f532142ef839ca0de03e30e685a3e8d17358018e684b/sequana_pacbio_qc-0.10.0.tar.gz (from https://pypi.org/simple/sequana-pacbio-qc/), version: 0.10.0 2023-05-22T17:37:50,522 Found link https://files.pythonhosted.org/packages/e6/4b/0b5288ab2c43d9fa1c6d28e7b7c7b52a73a4d68fef622a7310e1e0dda77e/sequana_pacbio_qc-0.11.0.tar.gz (from https://pypi.org/simple/sequana-pacbio-qc/), version: 0.11.0 2023-05-22T17:37:50,523 Found link https://files.pythonhosted.org/packages/da/52/661ae18848bdf9a3f4c3893de46522d92f8b146f554c156fa245f7a7442e/sequana_pacbio_qc-1.0.0.tar.gz (from https://pypi.org/simple/sequana-pacbio-qc/), version: 1.0.0 2023-05-22T17:37:50,524 Fetching project page and analyzing links: https://www.piwheels.org/simple/sequana-pacbio-qc/ 2023-05-22T17:37:50,524 Getting page https://www.piwheels.org/simple/sequana-pacbio-qc/ 2023-05-22T17:37:50,527 Found index url https://www.piwheels.org/simple/ 2023-05-22T17:37:50,797 Fetched page https://www.piwheels.org/simple/sequana-pacbio-qc/ as text/html 2023-05-22T17:37:50,802 Skipping link: No binaries permitted for sequana-pacbio-qc: https://www.piwheels.org/simple/sequana-pacbio-qc/sequana_pacbio_qc-0.11.0-py3-none-any.whl#sha256=a3bb6ba78e0f61f963c0a4cafe4e2edba98220cc68f628f61251a585437c6a14 (from https://www.piwheels.org/simple/sequana-pacbio-qc/) 2023-05-22T17:37:50,802 Skipping link: No binaries permitted for sequana-pacbio-qc: https://www.piwheels.org/simple/sequana-pacbio-qc/sequana_pacbio_qc-0.10.0-py3-none-any.whl#sha256=1cbb91c8d0e78c84ae520116b43cef9cbfe142f8ce9e9ee9a1505bbf0914bdd9 (from https://www.piwheels.org/simple/sequana-pacbio-qc/) 2023-05-22T17:37:50,803 Skipping link: No binaries permitted for sequana-pacbio-qc: https://www.piwheels.org/simple/sequana-pacbio-qc/sequana_pacbio_qc-0.9.0-py3-none-any.whl#sha256=a0a02bdc1951bac94df4799610d147ada2096f05d9eecb93bc8f385033ed711d (from https://www.piwheels.org/simple/sequana-pacbio-qc/) 2023-05-22T17:37:50,803 Skipping link: not a file: https://www.piwheels.org/simple/sequana-pacbio-qc/ 2023-05-22T17:37:50,804 Skipping link: not a file: https://pypi.org/simple/sequana-pacbio-qc/ 2023-05-22T17:37:50,838 Given no hashes to check 1 links for project 'sequana-pacbio-qc': discarding no candidates 2023-05-22T17:37:50,869 Collecting sequana-pacbio-qc==1.0.0 2023-05-22T17:37:50,873 Created temporary directory: /tmp/pip-unpack-2bxj1gka 2023-05-22T17:37:51,051 Downloading sequana_pacbio_qc-1.0.0.tar.gz (30 kB) 2023-05-22T17:37:51,153 Added sequana-pacbio-qc==1.0.0 from https://files.pythonhosted.org/packages/da/52/661ae18848bdf9a3f4c3893de46522d92f8b146f554c156fa245f7a7442e/sequana_pacbio_qc-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-8eyh6ldp' 2023-05-22T17:37:51,156 Running setup.py (path:/tmp/pip-wheel-qdu2oul8/sequana-pacbio-qc_d08b4e808fa7402884bd9c31a8fa22e9/setup.py) egg_info for package sequana-pacbio-qc 2023-05-22T17:37:51,158 Created temporary directory: /tmp/pip-pip-egg-info-rziqselq 2023-05-22T17:37:51,158 Preparing metadata (setup.py): started 2023-05-22T17:37:51,160 Running command python setup.py egg_info 2023-05-22T17:37:52,704 running egg_info 2023-05-22T17:37:52,707 creating /tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info 2023-05-22T17:37:52,772 writing /tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info/PKG-INFO 2023-05-22T17:37:52,778 writing dependency_links to /tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info/dependency_links.txt 2023-05-22T17:37:52,782 writing entry points to /tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info/entry_points.txt 2023-05-22T17:37:52,785 writing requirements to /tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info/requires.txt 2023-05-22T17:37:52,788 writing top-level names to /tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info/top_level.txt 2023-05-22T17:37:52,790 writing manifest file '/tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info/SOURCES.txt' 2023-05-22T17:37:52,998 reading manifest file '/tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info/SOURCES.txt' 2023-05-22T17:37:53,001 reading manifest template 'MANIFEST.in' 2023-05-22T17:37:53,004 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-05-22T17:37:53,006 warning: no previously-included files matching '*pyc' found under directory '*' 2023-05-22T17:37:53,008 warning: no previously-included files matching 'doc/wiki' found under directory '*' 2023-05-22T17:37:53,031 no previously-included directories found matching 'test' 2023-05-22T17:37:53,037 writing manifest file '/tmp/pip-pip-egg-info-rziqselq/sequana_pacbio_qc.egg-info/SOURCES.txt' 2023-05-22T17:37:53,158 Preparing metadata (setup.py): finished with status 'done' 2023-05-22T17:37:53,173 Source in /tmp/pip-wheel-qdu2oul8/sequana-pacbio-qc_d08b4e808fa7402884bd9c31a8fa22e9 has version 1.0.0, which satisfies requirement sequana-pacbio-qc==1.0.0 from https://files.pythonhosted.org/packages/da/52/661ae18848bdf9a3f4c3893de46522d92f8b146f554c156fa245f7a7442e/sequana_pacbio_qc-1.0.0.tar.gz 2023-05-22T17:37:53,175 Removed sequana-pacbio-qc==1.0.0 from https://files.pythonhosted.org/packages/da/52/661ae18848bdf9a3f4c3893de46522d92f8b146f554c156fa245f7a7442e/sequana_pacbio_qc-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-8eyh6ldp' 2023-05-22T17:37:53,187 Created temporary directory: /tmp/pip-unpack-p649fzql 2023-05-22T17:37:53,188 Building wheels for collected packages: sequana-pacbio-qc 2023-05-22T17:37:53,202 Created temporary directory: /tmp/pip-wheel-byxz0l49 2023-05-22T17:37:53,203 Building wheel for sequana-pacbio-qc (setup.py): started 2023-05-22T17:37:53,205 Destination directory: /tmp/pip-wheel-byxz0l49 2023-05-22T17:37:53,205 Running command python setup.py bdist_wheel 2023-05-22T17:37:54,825 running bdist_wheel 2023-05-22T17:37:55,518 running build 2023-05-22T17:37:55,519 running build_py 2023-05-22T17:37:55,589 creating build 2023-05-22T17:37:55,590 creating build/lib 2023-05-22T17:37:55,591 creating build/lib/sequana_pipelines 2023-05-22T17:37:55,593 creating build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,595 copying sequana_pipelines/pacbio_qc/__init__.py -> build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,600 copying sequana_pipelines/pacbio_qc/main.py -> build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,616 copying sequana_pipelines/pacbio_qc/schema.yaml -> build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,620 copying sequana_pipelines/pacbio_qc/config.yaml -> build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,625 copying sequana_pipelines/pacbio_qc/multiqc_config.yaml -> build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,630 copying sequana_pipelines/pacbio_qc/pacbio_qc.rules -> build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,635 copying sequana_pipelines/pacbio_qc/requirements.txt -> build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,639 copying sequana_pipelines/pacbio_qc/dag.png -> build/lib/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,718 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-22T17:37:55,719 !! 2023-05-22T17:37:55,719 ******************************************************************************** 2023-05-22T17:37:55,720 Please avoid running ``setup.py`` directly. 2023-05-22T17:37:55,720 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-22T17:37:55,720 other standards-based tools. 2023-05-22T17:37:55,721 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-22T17:37:55,721 ******************************************************************************** 2023-05-22T17:37:55,722 !! 2023-05-22T17:37:55,723 self.initialize_options() 2023-05-22T17:37:55,789 installing to build/bdist.linux-armv7l/wheel 2023-05-22T17:37:55,789 running install 2023-05-22T17:37:55,848 running install_lib 2023-05-22T17:37:55,916 creating build/bdist.linux-armv7l 2023-05-22T17:37:55,917 creating build/bdist.linux-armv7l/wheel 2023-05-22T17:37:55,920 creating build/bdist.linux-armv7l/wheel/sequana_pipelines 2023-05-22T17:37:55,924 creating build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,926 copying build/lib/sequana_pipelines/pacbio_qc/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,931 copying build/lib/sequana_pipelines/pacbio_qc/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,934 copying build/lib/sequana_pipelines/pacbio_qc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,938 copying build/lib/sequana_pipelines/pacbio_qc/config.yaml -> build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,942 copying build/lib/sequana_pipelines/pacbio_qc/main.py -> build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,946 copying build/lib/sequana_pipelines/pacbio_qc/pacbio_qc.rules -> build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,951 copying build/lib/sequana_pipelines/pacbio_qc/dag.png -> build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,956 copying build/lib/sequana_pipelines/pacbio_qc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana_pipelines/pacbio_qc 2023-05-22T17:37:55,960 running install_egg_info 2023-05-22T17:37:56,119 running egg_info 2023-05-22T17:37:56,180 writing sequana_pacbio_qc.egg-info/PKG-INFO 2023-05-22T17:37:56,184 writing dependency_links to sequana_pacbio_qc.egg-info/dependency_links.txt 2023-05-22T17:37:56,188 writing entry points to sequana_pacbio_qc.egg-info/entry_points.txt 2023-05-22T17:37:56,191 writing requirements to sequana_pacbio_qc.egg-info/requires.txt 2023-05-22T17:37:56,194 writing top-level names to sequana_pacbio_qc.egg-info/top_level.txt 2023-05-22T17:37:56,266 reading manifest file 'sequana_pacbio_qc.egg-info/SOURCES.txt' 2023-05-22T17:37:56,271 reading manifest template 'MANIFEST.in' 2023-05-22T17:37:56,274 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-05-22T17:37:56,275 warning: no previously-included files matching '*pyc' found under directory '*' 2023-05-22T17:37:56,277 warning: no previously-included files matching 'doc/wiki' found under directory '*' 2023-05-22T17:37:56,321 no previously-included directories found matching 'test' 2023-05-22T17:37:56,327 writing manifest file 'sequana_pacbio_qc.egg-info/SOURCES.txt' 2023-05-22T17:37:56,330 Copying sequana_pacbio_qc.egg-info to build/bdist.linux-armv7l/wheel/sequana_pacbio_qc-1.0.0-py3.7.egg-info 2023-05-22T17:37:56,358 running install_scripts 2023-05-22T17:37:56,396 creating build/bdist.linux-armv7l/wheel/sequana_pacbio_qc-1.0.0.dist-info/WHEEL 2023-05-22T17:37:56,401 creating '/tmp/pip-wheel-byxz0l49/sequana_pacbio_qc-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-22T17:37:56,408 adding 'sequana_pipelines/pacbio_qc/__init__.py' 2023-05-22T17:37:56,411 adding 'sequana_pipelines/pacbio_qc/config.yaml' 2023-05-22T17:37:56,418 adding 'sequana_pipelines/pacbio_qc/dag.png' 2023-05-22T17:37:56,421 adding 'sequana_pipelines/pacbio_qc/main.py' 2023-05-22T17:37:56,425 adding 'sequana_pipelines/pacbio_qc/multiqc_config.yaml' 2023-05-22T17:37:56,430 adding 'sequana_pipelines/pacbio_qc/pacbio_qc.rules' 2023-05-22T17:37:56,433 adding 'sequana_pipelines/pacbio_qc/requirements.txt' 2023-05-22T17:37:56,436 adding 'sequana_pipelines/pacbio_qc/schema.yaml' 2023-05-22T17:37:56,439 adding 'sequana_pacbio_qc-1.0.0.dist-info/METADATA' 2023-05-22T17:37:56,441 adding 'sequana_pacbio_qc-1.0.0.dist-info/WHEEL' 2023-05-22T17:37:56,443 adding 'sequana_pacbio_qc-1.0.0.dist-info/entry_points.txt' 2023-05-22T17:37:56,445 adding 'sequana_pacbio_qc-1.0.0.dist-info/top_level.txt' 2023-05-22T17:37:56,447 adding 'sequana_pacbio_qc-1.0.0.dist-info/RECORD' 2023-05-22T17:37:56,450 removing build/bdist.linux-armv7l/wheel 2023-05-22T17:37:56,615 Building wheel for sequana-pacbio-qc (setup.py): finished with status 'done' 2023-05-22T17:37:56,623 Created wheel for sequana-pacbio-qc: filename=sequana_pacbio_qc-1.0.0-py3-none-any.whl size=30946 sha256=62c958fd7a26d187479e9fd124087ce8e7150033ecbc1816f7d1f1d5429c7820 2023-05-22T17:37:56,626 Stored in directory: /tmp/pip-ephem-wheel-cache-uznp_rdh/wheels/10/94/50/5996c7e1a94362308a3d2bcdfec5fec6ace774c943411ff585 2023-05-22T17:37:56,654 Successfully built sequana-pacbio-qc 2023-05-22T17:37:56,663 Removed build tracker: '/tmp/pip-build-tracker-8eyh6ldp'