2023-05-23T10:42:30,690 Created temporary directory: /tmp/pip-build-tracker-9eo5p3p6 2023-05-23T10:42:30,693 Initialized build tracking at /tmp/pip-build-tracker-9eo5p3p6 2023-05-23T10:42:30,693 Created build tracker: /tmp/pip-build-tracker-9eo5p3p6 2023-05-23T10:42:30,694 Entered build tracker: /tmp/pip-build-tracker-9eo5p3p6 2023-05-23T10:42:30,695 Created temporary directory: /tmp/pip-wheel-uaa5fpu8 2023-05-23T10:42:30,703 Created temporary directory: /tmp/pip-ephem-wheel-cache-2sx8dv9p 2023-05-23T10:42:30,754 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-23T10:42:30,762 2 location(s) to search for versions of kmergenetyper: 2023-05-23T10:42:30,762 * https://pypi.org/simple/kmergenetyper/ 2023-05-23T10:42:30,762 * https://www.piwheels.org/simple/kmergenetyper/ 2023-05-23T10:42:30,763 Fetching project page and analyzing links: https://pypi.org/simple/kmergenetyper/ 2023-05-23T10:42:30,764 Getting page https://pypi.org/simple/kmergenetyper/ 2023-05-23T10:42:30,769 Found index url https://pypi.org/simple/ 2023-05-23T10:42:30,964 Fetched page https://pypi.org/simple/kmergenetyper/ as application/vnd.pypi.simple.v1+json 2023-05-23T10:42:30,973 Found link https://files.pythonhosted.org/packages/07/e1/32da0abd3e1a424d0dfdfababf8f55009a9070f094daba8269857c24b6fb/kmergenetyper-1.0.0.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.0 2023-05-23T10:42:30,974 Found link https://files.pythonhosted.org/packages/ef/4b/5da7fc6c85ee329fdbad2f7cd0c556baf9e43a19267f4693def6b0e9bf55/kmergenetyper-1.0.1.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.1 2023-05-23T10:42:30,974 Found link https://files.pythonhosted.org/packages/0c/ea/c9704184cd46f95e44d28df008c16492f8d116a0312a524a40dc33015ad4/kmergenetyper-1.0.2.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.2 2023-05-23T10:42:30,975 Found link https://files.pythonhosted.org/packages/05/8b/76626c85314fa93a971a8a1fd2b8b5d2e29819511dca49ae79cc1d81bf6e/kmergenetyper-1.0.3.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.3 2023-05-23T10:42:30,976 Found link https://files.pythonhosted.org/packages/43/78/c63fbd748d8a0ebe0451ec683eb39c2402c05cf366bf298b352eaaf05378/kmergenetyper-1.0.4.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.4 2023-05-23T10:42:30,976 Found link https://files.pythonhosted.org/packages/91/e7/399c3dc59073bec9c6ee33ea6b3c6b12d1cc23e1393fa0cc6e2c53fe7937/kmergenetyper-1.0.5.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.5 2023-05-23T10:42:30,977 Found link https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.6 2023-05-23T10:42:30,978 Found link https://files.pythonhosted.org/packages/f1/44/d05bf03b067d18bc15e9e57a6e114b876418bb8c83be502c712cef3a958a/kmergenetyper-1.0.7.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.7 2023-05-23T10:42:30,978 Found link https://files.pythonhosted.org/packages/e3/e7/127c1d33013b6176bd975ec56c2793b2888b903479794639d464251ebf17/kmergenetyper-1.0.8.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.8 2023-05-23T10:42:30,979 Found link https://files.pythonhosted.org/packages/5d/ae/321fdf636e730e328a51851060905d6ad88481ecfc38352aafe0bb250ef7/kmergenetyper-1.0.9.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.9 2023-05-23T10:42:30,980 Found link https://files.pythonhosted.org/packages/55/85/e138b090fcfdc379c7e6e06291249c0d11c1fc68c7f841f61c0f7f57a2c7/kmergenetyper-1.0.10.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.10 2023-05-23T10:42:30,980 Found link https://files.pythonhosted.org/packages/51/c4/176bfaed5541263924c240d450b6bf5c81c4f1441901b47960ec21eaed7b/kmergenetyper-1.0.11.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.11 2023-05-23T10:42:30,981 Found link https://files.pythonhosted.org/packages/d0/51/c73da5eb63d32adf7dd6bcc811fc3862bd0d8e1cdac86aa0df8b775cf4e2/kmergenetyper-1.0.12.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.12 2023-05-23T10:42:30,982 Found link https://files.pythonhosted.org/packages/42/78/df8483c2da802b63762585695071bfafaee487fccce55b8a1f578c67129b/kmergenetyper-1.0.13.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.13 2023-05-23T10:42:30,982 Found link https://files.pythonhosted.org/packages/3f/23/7d74cddb379e944d4cbbf67f3c0a13d0cc95f56ab4a55ce30cd4a66a52dd/kmergenetyper-1.0.14.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.14 2023-05-23T10:42:30,983 Fetching project page and analyzing links: https://www.piwheels.org/simple/kmergenetyper/ 2023-05-23T10:42:30,984 Getting page https://www.piwheels.org/simple/kmergenetyper/ 2023-05-23T10:42:30,986 Found index url https://www.piwheels.org/simple/ 2023-05-23T10:42:31,230 Fetched page https://www.piwheels.org/simple/kmergenetyper/ as text/html 2023-05-23T10:42:31,242 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.13-py3-none-any.whl#sha256=341290b193c7afe7299d36a6f411ef417c2dd9f8efb458df58f5f9e00eb3eb0c (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,243 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.12-py3-none-any.whl#sha256=ed88ae39d918929cb04f7b35a1eaa4b44e8ba20766d066b207ea5467914de98f (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,244 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.11-py3-none-any.whl#sha256=d2ecf2fade1268e8e33fb44e3533dca334e9e36ff49c440f771ce7599520acc6 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,244 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.10-py3-none-any.whl#sha256=0db04840ee71fceaae2c473197c75fe0e9154b992a3a81b6782a021021ae09e6 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,245 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.9-py3-none-any.whl#sha256=40f073c81e4978a692271b72407989b00fc9f270d6f1e7aca670d8447780a87f (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,245 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.8-py3-none-any.whl#sha256=76cf8c5c5e4fbe86b1a27920802be0604fd45a6cc94cc96a92daae48225b7d98 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,246 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.7-py3-none-any.whl#sha256=bcc5f48a2e49e413f851d462683071f08e582ba2e79e4fea6566510c5a4b768a (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,246 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.6-py3-none-any.whl#sha256=ab143997e9a6010d7564b7eb332e30020e906dccb16109f80e7d9e7a4f7f522c (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,247 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.5-py3-none-any.whl#sha256=877e9f780151c571325541fd815a495ffc63a5d59a10bb71b900d649a52791b3 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,247 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.4-py3-none-any.whl#sha256=d48c366b8f5b9a584c25199de4ad637d9148de4f7e690cf89dbc99bc0bf3cd12 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,248 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.3-py3-none-any.whl#sha256=4da0dc59a822ade5f5437e73b699edf2efd0c1ced5911496db506d0f99f8c6fc (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,248 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.2-py3-none-any.whl#sha256=8647efa3afcd2812e0cddd6b46be8e62ba9cee51f8c364a62820efc5faf54b69 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,249 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.1-py3-none-any.whl#sha256=0ac6724b8b358e46144560e2fc69d753c7ebfa34243a55477bdb59221da645dd (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,249 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.0-py3-none-any.whl#sha256=f9349c95e0500e10963c0c41b8419305a344ceda1e21cd271ff2ac1b6e0652f6 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-05-23T10:42:31,250 Skipping link: not a file: https://www.piwheels.org/simple/kmergenetyper/ 2023-05-23T10:42:31,250 Skipping link: not a file: https://pypi.org/simple/kmergenetyper/ 2023-05-23T10:42:31,287 Given no hashes to check 1 links for project 'kmergenetyper': discarding no candidates 2023-05-23T10:42:31,318 Collecting kmergenetyper==1.0.14 2023-05-23T10:42:31,322 Created temporary directory: /tmp/pip-unpack-16kztkwz 2023-05-23T10:42:31,502 Downloading kmergenetyper-1.0.14.tar.gz (8.0 kB) 2023-05-23T10:42:31,591 Added kmergenetyper==1.0.14 from https://files.pythonhosted.org/packages/3f/23/7d74cddb379e944d4cbbf67f3c0a13d0cc95f56ab4a55ce30cd4a66a52dd/kmergenetyper-1.0.14.tar.gz to build tracker '/tmp/pip-build-tracker-9eo5p3p6' 2023-05-23T10:42:31,595 Running setup.py (path:/tmp/pip-wheel-uaa5fpu8/kmergenetyper_f81ac5cfbecc47b586b6711fbeefb4aa/setup.py) egg_info for package kmergenetyper 2023-05-23T10:42:31,596 Created temporary directory: /tmp/pip-pip-egg-info-yodfdln9 2023-05-23T10:42:31,597 Preparing metadata (setup.py): started 2023-05-23T10:42:31,599 Running command python setup.py egg_info 2023-05-23T10:42:33,146 running egg_info 2023-05-23T10:42:33,155 creating /tmp/pip-pip-egg-info-yodfdln9/kmergenetyper.egg-info 2023-05-23T10:42:33,217 writing /tmp/pip-pip-egg-info-yodfdln9/kmergenetyper.egg-info/PKG-INFO 2023-05-23T10:42:33,221 writing dependency_links to /tmp/pip-pip-egg-info-yodfdln9/kmergenetyper.egg-info/dependency_links.txt 2023-05-23T10:42:33,226 writing top-level names to /tmp/pip-pip-egg-info-yodfdln9/kmergenetyper.egg-info/top_level.txt 2023-05-23T10:42:33,232 writing manifest file '/tmp/pip-pip-egg-info-yodfdln9/kmergenetyper.egg-info/SOURCES.txt' 2023-05-23T10:42:33,497 reading manifest file '/tmp/pip-pip-egg-info-yodfdln9/kmergenetyper.egg-info/SOURCES.txt' 2023-05-23T10:42:33,500 adding license file 'LICENSE' 2023-05-23T10:42:33,505 writing manifest file '/tmp/pip-pip-egg-info-yodfdln9/kmergenetyper.egg-info/SOURCES.txt' 2023-05-23T10:42:33,626 Preparing metadata (setup.py): finished with status 'done' 2023-05-23T10:42:33,636 Source in /tmp/pip-wheel-uaa5fpu8/kmergenetyper_f81ac5cfbecc47b586b6711fbeefb4aa has version 1.0.14, which satisfies requirement kmergenetyper==1.0.14 from https://files.pythonhosted.org/packages/3f/23/7d74cddb379e944d4cbbf67f3c0a13d0cc95f56ab4a55ce30cd4a66a52dd/kmergenetyper-1.0.14.tar.gz 2023-05-23T10:42:33,638 Removed kmergenetyper==1.0.14 from https://files.pythonhosted.org/packages/3f/23/7d74cddb379e944d4cbbf67f3c0a13d0cc95f56ab4a55ce30cd4a66a52dd/kmergenetyper-1.0.14.tar.gz from build tracker '/tmp/pip-build-tracker-9eo5p3p6' 2023-05-23T10:42:33,648 Created temporary directory: /tmp/pip-unpack-nkh5vf8_ 2023-05-23T10:42:33,649 Building wheels for collected packages: kmergenetyper 2023-05-23T10:42:33,658 Created temporary directory: /tmp/pip-wheel-63geykk4 2023-05-23T10:42:33,659 Building wheel for kmergenetyper (setup.py): started 2023-05-23T10:42:33,661 Destination directory: /tmp/pip-wheel-63geykk4 2023-05-23T10:42:33,662 Running command python setup.py bdist_wheel 2023-05-23T10:42:35,203 running bdist_wheel 2023-05-23T10:42:35,905 running build 2023-05-23T10:42:35,906 running build_py 2023-05-23T10:42:35,979 creating build 2023-05-23T10:42:35,980 creating build/lib 2023-05-23T10:42:35,981 creating build/lib/kmergenetyper 2023-05-23T10:42:35,984 copying kmergenetyper/version.py -> build/lib/kmergenetyper 2023-05-23T10:42:35,987 copying kmergenetyper/__init__.py -> build/lib/kmergenetyper 2023-05-23T10:42:35,990 copying kmergenetyper/kma.py -> build/lib/kmergenetyper 2023-05-23T10:42:35,994 copying kmergenetyper/realignConsensus.py -> build/lib/kmergenetyper 2023-05-23T10:42:35,998 copying kmergenetyper/typeGenes.py -> build/lib/kmergenetyper 2023-05-23T10:42:36,001 running egg_info 2023-05-23T10:42:36,153 writing kmergenetyper.egg-info/PKG-INFO 2023-05-23T10:42:36,156 writing dependency_links to kmergenetyper.egg-info/dependency_links.txt 2023-05-23T10:42:36,161 writing top-level names to kmergenetyper.egg-info/top_level.txt 2023-05-23T10:42:36,231 reading manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-05-23T10:42:36,234 adding license file 'LICENSE' 2023-05-23T10:42:36,241 writing manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-05-23T10:42:36,246 running build_scripts 2023-05-23T10:42:36,247 creating build/scripts-3.7 2023-05-23T10:42:36,249 copying and adjusting bin/kmergenetyper -> build/scripts-3.7 2023-05-23T10:42:36,251 changing mode of build/scripts-3.7/kmergenetyper from 644 to 755 2023-05-23T10:42:36,324 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-23T10:42:36,325 !! 2023-05-23T10:42:36,326 ******************************************************************************** 2023-05-23T10:42:36,326 Please avoid running ``setup.py`` directly. 2023-05-23T10:42:36,327 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-23T10:42:36,327 other standards-based tools. 2023-05-23T10:42:36,328 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-23T10:42:36,328 ******************************************************************************** 2023-05-23T10:42:36,329 !! 2023-05-23T10:42:36,329 self.initialize_options() 2023-05-23T10:42:36,391 installing to build/bdist.linux-armv7l/wheel 2023-05-23T10:42:36,392 running install 2023-05-23T10:42:36,453 running install_lib 2023-05-23T10:42:36,525 creating build/bdist.linux-armv7l 2023-05-23T10:42:36,526 creating build/bdist.linux-armv7l/wheel 2023-05-23T10:42:36,529 creating build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-23T10:42:36,531 copying build/lib/kmergenetyper/version.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-23T10:42:36,535 copying build/lib/kmergenetyper/__init__.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-23T10:42:36,538 copying build/lib/kmergenetyper/kma.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-23T10:42:36,541 copying build/lib/kmergenetyper/realignConsensus.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-23T10:42:36,546 copying build/lib/kmergenetyper/typeGenes.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-05-23T10:42:36,549 running install_egg_info 2023-05-23T10:42:36,624 Copying kmergenetyper.egg-info to build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.14-py3.7.egg-info 2023-05-23T10:42:36,640 running install_scripts 2023-05-23T10:42:36,642 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.14.data 2023-05-23T10:42:36,643 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.14.data/scripts 2023-05-23T10:42:36,645 copying build/scripts-3.7/kmergenetyper -> build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.14.data/scripts 2023-05-23T10:42:36,649 changing mode of build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.14.data/scripts/kmergenetyper to 755 2023-05-23T10:42:36,673 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.14.dist-info/WHEEL 2023-05-23T10:42:36,678 creating '/tmp/pip-wheel-63geykk4/kmergenetyper-1.0.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-23T10:42:36,683 adding 'kmergenetyper/__init__.py' 2023-05-23T10:42:36,685 adding 'kmergenetyper/kma.py' 2023-05-23T10:42:36,689 adding 'kmergenetyper/realignConsensus.py' 2023-05-23T10:42:36,691 adding 'kmergenetyper/typeGenes.py' 2023-05-23T10:42:36,694 adding 'kmergenetyper/version.py' 2023-05-23T10:42:36,698 adding 'kmergenetyper-1.0.14.data/scripts/kmergenetyper' 2023-05-23T10:42:36,705 adding 'kmergenetyper-1.0.14.dist-info/LICENSE' 2023-05-23T10:42:36,707 adding 'kmergenetyper-1.0.14.dist-info/METADATA' 2023-05-23T10:42:36,709 adding 'kmergenetyper-1.0.14.dist-info/WHEEL' 2023-05-23T10:42:36,711 adding 'kmergenetyper-1.0.14.dist-info/top_level.txt' 2023-05-23T10:42:36,713 adding 'kmergenetyper-1.0.14.dist-info/RECORD' 2023-05-23T10:42:36,715 removing build/bdist.linux-armv7l/wheel 2023-05-23T10:42:36,877 Building wheel for kmergenetyper (setup.py): finished with status 'done' 2023-05-23T10:42:36,884 Created wheel for kmergenetyper: filename=kmergenetyper-1.0.14-py3-none-any.whl size=9381 sha256=3b2ab624826a59e5cca07414927ee52c0eda6d7c08260bed3659cddcd23fcfe2 2023-05-23T10:42:36,886 Stored in directory: /tmp/pip-ephem-wheel-cache-2sx8dv9p/wheels/48/a1/78/6ee8cda5ffde5f243f7a3ad5e0112d0c740ff3f4e1b36b9063 2023-05-23T10:42:36,912 Successfully built kmergenetyper 2023-05-23T10:42:36,919 Removed build tracker: '/tmp/pip-build-tracker-9eo5p3p6'