2023-05-23T14:06:49,180 Created temporary directory: /tmp/pip-build-tracker-x9d_8rzj 2023-05-23T14:06:49,183 Initialized build tracking at /tmp/pip-build-tracker-x9d_8rzj 2023-05-23T14:06:49,183 Created build tracker: /tmp/pip-build-tracker-x9d_8rzj 2023-05-23T14:06:49,183 Entered build tracker: /tmp/pip-build-tracker-x9d_8rzj 2023-05-23T14:06:49,185 Created temporary directory: /tmp/pip-wheel-oht301yb 2023-05-23T14:06:49,193 Created temporary directory: /tmp/pip-ephem-wheel-cache-h1bibsjq 2023-05-23T14:06:49,251 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-23T14:06:49,259 2 location(s) to search for versions of chemfiles: 2023-05-23T14:06:49,259 * https://pypi.org/simple/chemfiles/ 2023-05-23T14:06:49,259 * https://www.piwheels.org/simple/chemfiles/ 2023-05-23T14:06:49,260 Fetching project page and analyzing links: https://pypi.org/simple/chemfiles/ 2023-05-23T14:06:49,261 Getting page https://pypi.org/simple/chemfiles/ 2023-05-23T14:06:49,266 Found index url https://pypi.org/simple/ 2023-05-23T14:06:49,455 Fetched page https://pypi.org/simple/chemfiles/ as application/vnd.pypi.simple.v1+json 2023-05-23T14:06:49,482 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/1b/58/d020b8b69e71ddc3e70873095649b454737981f53d3897a32579371e4151/chemfiles-0.8.0-py2.py3-none-macosx_10_9_x86_64.whl (from https://pypi.org/simple/chemfiles/) 2023-05-23T14:06:49,483 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/a6/09/a4c8eabb339b23ab54148077ea09df35656733979169a5dc50d98253f769/chemfiles-0.8.0-py2.py3-none-manylinux1_i686.whl (from https://pypi.org/simple/chemfiles/) 2023-05-23T14:06:49,484 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/66/35/f669f1d2155a8397a1553ac0ba831dd64a5968567f8f102b57cb32e5442b/chemfiles-0.8.0-py2.py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/chemfiles/) 2023-05-23T14:06:49,484 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/24/ac/b661e2ace2cef025931de46b24603be4f3a5d336275d3057e99d1f0ad044/chemfiles-0.8.0-py2.py3-none-win32.whl (from https://pypi.org/simple/chemfiles/) 2023-05-23T14:06:49,485 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/9b/f9/8b07c1ed29ee19c490c78be60711ccc097483954224729d1d7eb67aa9bf1/chemfiles-0.8.0-py2.py3-none-win_amd64.whl (from https://pypi.org/simple/chemfiles/) 2023-05-23T14:06:49,485 Found link https://files.pythonhosted.org/packages/0e/f4/055cefcc4fdbe34b7ba42eadce2f1f107bd646f1d0be258cdf94bc609bc6/chemfiles-0.8.0.tar.gz (from https://pypi.org/simple/chemfiles/), version: 0.8.0 2023-05-23T14:06:49,486 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/80/49/629e83a3fff73c41a08317f27ad0c24c4e22862940a53fc4532dfae9a895/chemfiles-0.9.1-py2.py3-none-macosx_10_9_x86_64.whl (from 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2023-05-23T14:06:49,506 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/19/3b/b74426cfcfc7935e110dc9a6dbf7d87bf2ebf036928cbca29a398505cfde/chemfiles-0.10.3-py2.py3-none-macosx_11_0_arm64.whl (from https://pypi.org/simple/chemfiles/) 2023-05-23T14:06:49,507 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/d6/7d/f892e8b65d3c1ef1b3dda1da9e86a56484ef26b1abd12b8f047620241a71/chemfiles-0.10.3-py2.py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/chemfiles/) 2023-05-23T14:06:49,507 Skipping link: No binaries permitted for chemfiles: https://files.pythonhosted.org/packages/1e/83/5a7b707bc74c2df297d56d73b9e1a39c5ab9be317b1b50b7645b004be30e/chemfiles-0.10.3-py2.py3-none-win32.whl (from https://pypi.org/simple/chemfiles/) 2023-05-23T14:06:49,508 Skipping link: No binaries permitted for chemfiles: 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https://www.piwheels.org/simple/chemfiles/chemfiles-0.10.0-py2.py3-none-linux_armv6l.whl#sha256=b7f387f3badc60e5b20ff7be596a7000ff0ee1868a5f055f9a358e0ccd93b29d (from https://www.piwheels.org/simple/chemfiles/) 2023-05-23T14:06:49,785 Skipping link: No binaries permitted for chemfiles: https://www.piwheels.org/simple/chemfiles/chemfiles-0.9.3-py2.py3-none-linux_armv7l.whl#sha256=f9ec0c923da2543df25fac7d1eb9a79bf26b5bd4e4910d88e8c8aadc1ba98e32 (from https://www.piwheels.org/simple/chemfiles/) 2023-05-23T14:06:49,785 Skipping link: No binaries permitted for chemfiles: https://www.piwheels.org/simple/chemfiles/chemfiles-0.9.3-py2.py3-none-linux_armv6l.whl#sha256=f9ec0c923da2543df25fac7d1eb9a79bf26b5bd4e4910d88e8c8aadc1ba98e32 (from https://www.piwheels.org/simple/chemfiles/) 2023-05-23T14:06:49,786 Skipping link: No binaries permitted for chemfiles: https://www.piwheels.org/simple/chemfiles/chemfiles-0.9.2-py2.py3-none-linux_armv7l.whl#sha256=e67d6595a8f8c0fdbb9b6ce48f557433e4873c805454180e1209f63e9e0aa73d (from https://www.piwheels.org/simple/chemfiles/) 2023-05-23T14:06:49,786 Skipping link: No binaries permitted for chemfiles: https://www.piwheels.org/simple/chemfiles/chemfiles-0.9.2-py2.py3-none-linux_armv6l.whl#sha256=e67d6595a8f8c0fdbb9b6ce48f557433e4873c805454180e1209f63e9e0aa73d (from https://www.piwheels.org/simple/chemfiles/) 2023-05-23T14:06:49,787 Skipping link: No binaries permitted for chemfiles: https://www.piwheels.org/simple/chemfiles/chemfiles-0.9.1-py2.py3-none-linux_armv7l.whl#sha256=6ef1395d34e1934004558b9ee4dd123c36fd63e188d628fe54a83c5b85fcd4da (from https://www.piwheels.org/simple/chemfiles/) 2023-05-23T14:06:49,787 Skipping link: No binaries permitted for chemfiles: https://www.piwheels.org/simple/chemfiles/chemfiles-0.9.1-py2.py3-none-linux_armv6l.whl#sha256=6ef1395d34e1934004558b9ee4dd123c36fd63e188d628fe54a83c5b85fcd4da (from https://www.piwheels.org/simple/chemfiles/) 2023-05-23T14:06:49,788 Skipping link: No binaries permitted for chemfiles: https://www.piwheels.org/simple/chemfiles/chemfiles-0.8.0-py2.py3-none-any.whl#sha256=a3f691b4690045b8ab1ef9c0f7d2c00e1bcd607e75eba7906e110bf970792a2d (from https://www.piwheels.org/simple/chemfiles/) 2023-05-23T14:06:49,788 Skipping link: not a file: https://www.piwheels.org/simple/chemfiles/ 2023-05-23T14:06:49,789 Skipping link: not a file: https://pypi.org/simple/chemfiles/ 2023-05-23T14:06:49,824 Given no hashes to check 1 links for project 'chemfiles': discarding no candidates 2023-05-23T14:06:49,859 Collecting chemfiles==0.10.4 2023-05-23T14:06:49,863 Created temporary directory: /tmp/pip-unpack-5743qm_f 2023-05-23T14:06:49,962 Downloading chemfiles-0.10.4.tar.gz (3.6 MB) 2023-05-23T14:06:52,016 Added chemfiles==0.10.4 from https://files.pythonhosted.org/packages/c2/51/35538663b6384add778945735478da66b7c3095649654325d001922f30f8/chemfiles-0.10.4.tar.gz to build tracker '/tmp/pip-build-tracker-x9d_8rzj' 2023-05-23T14:06:52,030 Created temporary directory: /tmp/pip-build-env-mh05xv66 2023-05-23T14:06:52,051 Installing build dependencies: started 2023-05-23T14:06:52,053 Running command pip subprocess to install build dependencies 2023-05-23T14:06:54,760 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-05-23T14:06:55,543 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-23T14:06:59,619 Collecting setuptools>=44 2023-05-23T14:06:59,876 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB) 2023-05-23T14:07:00,531 Collecting wheel>=0.36 2023-05-23T14:07:00,568 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-05-23T14:07:02,260 Collecting cmake 2023-05-23T14:07:05,400 Using cached https://www.piwheels.org/simple/cmake/cmake-3.25.2-cp37-cp37m-linux_armv7l.whl (16.1 MB) 2023-05-23T14:07:07,435 Collecting ninja 2023-05-23T14:07:07,507 Using cached https://www.piwheels.org/simple/ninja/ninja-1.11.1-cp37-cp37m-linux_armv7l.whl (117 kB) 2023-05-23T14:07:13,025 Installing collected packages: ninja, cmake, wheel, setuptools 2023-05-23T14:07:13,145 Creating /tmp/pip-build-env-mh05xv66/overlay/bin 2023-05-23T14:07:13,150 changing mode of /tmp/pip-build-env-mh05xv66/overlay/bin/ninja to 755 2023-05-23T14:07:27,178 changing mode of /tmp/pip-build-env-mh05xv66/overlay/bin/cmake to 755 2023-05-23T14:07:27,184 changing mode of /tmp/pip-build-env-mh05xv66/overlay/bin/cpack to 755 2023-05-23T14:07:27,190 changing mode of /tmp/pip-build-env-mh05xv66/overlay/bin/ctest to 755 2023-05-23T14:07:27,923 changing mode of /tmp/pip-build-env-mh05xv66/overlay/bin/wheel to 755 2023-05-23T14:07:32,177 Successfully installed cmake-3.25.2 ninja-1.11.1 setuptools-67.8.0 wheel-0.40.0 2023-05-23T14:07:32,694 Installing build dependencies: finished with status 'done' 2023-05-23T14:07:32,706 Getting requirements to build wheel: started 2023-05-23T14:07:32,708 Running command Getting requirements to build wheel 2023-05-23T14:07:34,764 running egg_info 2023-05-23T14:07:34,777 writing src/chemfiles.egg-info/PKG-INFO 2023-05-23T14:07:34,781 writing dependency_links to src/chemfiles.egg-info/dependency_links.txt 2023-05-23T14:07:34,785 writing requirements to src/chemfiles.egg-info/requires.txt 2023-05-23T14:07:34,788 writing top-level names to src/chemfiles.egg-info/top_level.txt 2023-05-23T14:07:34,824 reading manifest file 'src/chemfiles.egg-info/SOURCES.txt' 2023-05-23T14:07:34,898 reading manifest template 'MANIFEST.in' 2023-05-23T14:07:34,900 warning: no files found matching '*' under directory 'chemfiles' 2023-05-23T14:07:35,100 no previously-included directories found matching 'lib/tests' 2023-05-23T14:07:35,102 no previously-included directories found matching 'lib/doc' 2023-05-23T14:07:35,103 adding license file 'LICENSE' 2023-05-23T14:07:35,136 writing manifest file 'src/chemfiles.egg-info/SOURCES.txt' 2023-05-23T14:07:35,267 Getting requirements to build wheel: finished with status 'done' 2023-05-23T14:07:35,289 Created temporary directory: /tmp/pip-modern-metadata-yo23e1pi 2023-05-23T14:07:35,295 Preparing metadata (pyproject.toml): started 2023-05-23T14:07:35,297 Running command Preparing metadata (pyproject.toml) 2023-05-23T14:07:36,753 running dist_info 2023-05-23T14:07:36,796 creating /tmp/pip-modern-metadata-yo23e1pi/chemfiles.egg-info 2023-05-23T14:07:36,807 writing /tmp/pip-modern-metadata-yo23e1pi/chemfiles.egg-info/PKG-INFO 2023-05-23T14:07:36,813 writing dependency_links to /tmp/pip-modern-metadata-yo23e1pi/chemfiles.egg-info/dependency_links.txt 2023-05-23T14:07:36,818 writing requirements to /tmp/pip-modern-metadata-yo23e1pi/chemfiles.egg-info/requires.txt 2023-05-23T14:07:36,820 writing top-level names to /tmp/pip-modern-metadata-yo23e1pi/chemfiles.egg-info/top_level.txt 2023-05-23T14:07:36,823 writing manifest file '/tmp/pip-modern-metadata-yo23e1pi/chemfiles.egg-info/SOURCES.txt' 2023-05-23T14:07:36,855 reading manifest file '/tmp/pip-modern-metadata-yo23e1pi/chemfiles.egg-info/SOURCES.txt' 2023-05-23T14:07:36,859 reading manifest template 'MANIFEST.in' 2023-05-23T14:07:36,861 warning: no files found matching '*' under directory 'chemfiles' 2023-05-23T14:07:37,052 no previously-included directories found matching 'lib/tests' 2023-05-23T14:07:37,053 no previously-included directories found matching 'lib/doc' 2023-05-23T14:07:37,055 adding license file 'LICENSE' 2023-05-23T14:07:37,078 writing manifest file '/tmp/pip-modern-metadata-yo23e1pi/chemfiles.egg-info/SOURCES.txt' 2023-05-23T14:07:37,081 creating '/tmp/pip-modern-metadata-yo23e1pi/chemfiles-0.10.4.dist-info' 2023-05-23T14:07:37,273 Preparing metadata (pyproject.toml): finished with status 'done' 2023-05-23T14:07:37,288 Source in /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d has version 0.10.4, which satisfies requirement chemfiles==0.10.4 from https://files.pythonhosted.org/packages/c2/51/35538663b6384add778945735478da66b7c3095649654325d001922f30f8/chemfiles-0.10.4.tar.gz 2023-05-23T14:07:37,290 Removed chemfiles==0.10.4 from https://files.pythonhosted.org/packages/c2/51/35538663b6384add778945735478da66b7c3095649654325d001922f30f8/chemfiles-0.10.4.tar.gz from build tracker '/tmp/pip-build-tracker-x9d_8rzj' 2023-05-23T14:07:37,300 Created temporary directory: /tmp/pip-unpack-2kqohhry 2023-05-23T14:07:37,302 Building wheels for collected packages: chemfiles 2023-05-23T14:07:37,310 Created temporary directory: /tmp/pip-wheel-r4p4tzuo 2023-05-23T14:07:37,311 Destination directory: /tmp/pip-wheel-r4p4tzuo 2023-05-23T14:07:37,316 Building wheel for chemfiles (pyproject.toml): started 2023-05-23T14:07:37,318 Running command Building wheel for chemfiles (pyproject.toml) 2023-05-23T14:07:38,732 running bdist_wheel 2023-05-23T14:07:38,773 running build 2023-05-23T14:07:38,774 running build_py 2023-05-23T14:07:39,946 -- Using internal chemfiles from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib 2023-05-23T14:07:40,521 -- The C compiler identification is GNU 8.3.0 2023-05-23T14:07:41,366 -- The CXX compiler identification is GNU 8.3.0 2023-05-23T14:07:41,470 -- Detecting C compiler ABI info 2023-05-23T14:07:43,212 -- Detecting C compiler ABI info - done 2023-05-23T14:07:43,309 -- Check for working C compiler: /usr/bin/cc - skipped 2023-05-23T14:07:43,312 -- Detecting C compile features 2023-05-23T14:07:43,317 -- Detecting C compile features - done 2023-05-23T14:07:43,370 -- Detecting CXX compiler ABI info 2023-05-23T14:07:45,363 -- Detecting CXX compiler ABI info - done 2023-05-23T14:07:45,466 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-05-23T14:07:45,470 -- Detecting CXX compile features 2023-05-23T14:07:45,477 -- Detecting CXX compile features - done 2023-05-23T14:11:23,686 -- Unpacking zlib sources 2023-05-23T14:11:33,035 -- Unpacking lzma sources 2023-05-23T14:12:40,633 -- Unpacking bzip2 sources 2023-05-23T14:12:40,884 -- Unpacking fmt sources 2023-05-23T14:12:53,865 -- Unpacking toml11 sources 2023-05-23T14:12:54,118 -- Unpacking tng sources 2023-05-23T14:12:56,453 -- Unpacking molfiles sources 2023-05-23T14:12:57,018 -- Unpacking mmtf-cpp sources 2023-05-23T14:12:58,649 -- Unpacking pugixml sources 2023-05-23T14:12:59,083 -- Unpacking gemmi sources 2023-05-23T14:13:05,794 -- Configuring done 2023-05-23T14:13:06,340 -- Generating done 2023-05-23T14:13:07,064 -- Build files have been written to: /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/build/cmake-build 2023-05-23T14:13:07,142 creating build/lib.linux-armv7l-cpython-37 2023-05-23T14:13:07,143 creating build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,146 copying src/chemfiles/residue.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,151 copying src/chemfiles/atom.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,156 copying src/chemfiles/frame.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,161 copying src/chemfiles/_c_api.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,167 copying src/chemfiles/property.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,171 copying src/chemfiles/__init__.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,174 copying src/chemfiles/utils.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,178 copying src/chemfiles/misc.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,183 copying src/chemfiles/cell.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,188 copying src/chemfiles/topology.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,193 copying src/chemfiles/selection.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,197 copying src/chemfiles/_c_lib.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,201 copying src/chemfiles/trajectory.py -> build/lib.linux-armv7l-cpython-37/chemfiles 2023-05-23T14:13:07,209 running build_ext 2023-05-23T14:13:20,941 [1/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o 2023-05-23T14:13:43,210 [2/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o 2023-05-23T14:13:43,211 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:13:43,212 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Format.cpp:6: 2023-05-23T14:13:43,213 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2023-05-23T14:13:43,213 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:13:43,214 vector<_Tp, _Alloc>:: 2023-05-23T14:13:43,215 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:13:43,215 /usr/include/c++/8/bits/vector.tcc: In member function ‘virtual void chemfiles::TextFormat::write(const chemfiles::Frame&)’: 2023-05-23T14:13:43,216 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:13:43,216 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:13:43,217 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:13:45,798 [3/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o 2023-05-23T14:13:47,352 [4/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o 2023-05-23T14:14:02,221 [5/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/FormatMetadata.cpp.o 2023-05-23T14:14:23,763 [6/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o 2023-05-23T14:14:25,054 [7/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o 2023-05-23T14:14:25,680 [8/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o 2023-05-23T14:14:25,681 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:14:25,681 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Frame.cpp:8: 2023-05-23T14:14:25,681 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const chemfiles::Vector3D&}; _Tp = chemfiles::Vector3D; _Alloc = std::allocator]’: 2023-05-23T14:14:25,682 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:14:25,682 vector<_Tp, _Alloc>:: 2023-05-23T14:14:25,683 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:14:25,683 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:14:25,683 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Frame.cpp:8: 2023-05-23T14:14:25,684 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::Frame::add_atom(chemfiles::Atom, chemfiles::Vector3D, chemfiles::Vector3D)’: 2023-05-23T14:14:25,684 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:14:25,685 _M_realloc_insert(end(), __x); 2023-05-23T14:14:25,685 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:14:25,686 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:14:25,686 _M_realloc_insert(end(), __x); 2023-05-23T14:14:25,686 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:14:38,261 [9/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o 2023-05-23T14:14:58,846 [10/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o 2023-05-23T14:15:04,505 [11/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o 2023-05-23T14:15:12,659 [12/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o 2023-05-23T14:15:12,660 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:15:12,660 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Topology.cpp:5: 2023-05-23T14:15:12,661 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Residue}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2023-05-23T14:15:12,662 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:15:12,662 vector<_Tp, _Alloc>:: 2023-05-23T14:15:12,662 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:15:12,663 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = chemfiles::Atom; _Alloc = std::allocator]’: 2023-05-23T14:15:12,663 /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:15:12,664 vector<_Tp, _Alloc>:: 2023-05-23T14:15:12,664 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:15:12,665 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:15:12,665 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Topology.cpp:5: 2023-05-23T14:15:12,666 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::Topology::resize(size_t)’: 2023-05-23T14:15:12,666 /usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:15:12,667 _M_fill_insert(end(), __new_size - size(), __x); 2023-05-23T14:15:12,667 ^~~~~~~~~~~~~~ 2023-05-23T14:15:12,668 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:15:12,668 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Topology.cpp:5: 2023-05-23T14:15:12,669 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::Topology::add_residue(chemfiles::Residue)’: 2023-05-23T14:15:12,669 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:15:12,670 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:15:12,670 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:15:21,846 [13/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o 2023-05-23T14:15:21,846 In file included from /usr/include/c++/8/memory:65, 2023-05-23T14:15:21,847 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Trajectory.cpp:6: 2023-05-23T14:15:21,847 /usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = chemfiles::Residue*; bool _TrivialValueTypes = false]’: 2023-05-23T14:15:21,848 /usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:15:21,848 __uninit_copy(_InputIterator __first, _InputIterator __last, 2023-05-23T14:15:21,849 ^~~~~~~~~~~~~ 2023-05-23T14:15:21,849 /usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:15:21,850 /usr/include/c++/8/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2023-05-23T14:15:21,850 /usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:15:21,851 return std::__uninitialized_copy<__is_trivial(_ValueType1) 2023-05-23T14:15:21,851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:15:21,852 && __is_trivial(_ValueType2) 2023-05-23T14:15:21,852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:15:21,853 && __assignable>:: 2023-05-23T14:15:21,853 ~~~~~~~~~~~~~~~~~~ 2023-05-23T14:15:21,854 __uninit_copy(__first, __last, __result); 2023-05-23T14:15:21,854 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:15:33,051 [14/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/atom.cpp.o 2023-05-23T14:15:56,721 [15/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/cell.cpp.o 2023-05-23T14:15:58,203 [16/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/misc.cpp.o 2023-05-23T14:16:03,158 [17/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/property.cpp.o 2023-05-23T14:16:07,510 [18/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/shared_allocator.cpp.o 2023-05-23T14:16:08,271 [19/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o 2023-05-23T14:16:08,271 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:16:08,272 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Configuration.cpp:7: 2023-05-23T14:16:08,272 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const toml::value&}; _Tp = toml::value; _Alloc = std::allocator]’: 2023-05-23T14:16:08,273 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:16:08,273 vector<_Tp, _Alloc>:: 2023-05-23T14:16:08,273 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:16:08,274 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {toml::value}; _Tp = toml::value; _Alloc = std::allocator]’: 2023-05-23T14:16:08,274 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:16:08,275 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:16:08,275 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Configuration.cpp:7: 2023-05-23T14:16:08,276 /usr/include/c++/8/bits/stl_vector.h: In function ‘toml::result > toml::detail::insert_nested_key(toml::table&, const toml::value&, InputIterator, InputIterator, toml::detail::region, bool) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; Container = std::vector]’: 2023-05-23T14:16:08,276 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:16:08,277 _M_realloc_insert(end(), __x); 2023-05-23T14:16:08,278 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:16:08,278 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:16:08,279 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/Configuration.cpp:7: 2023-05-23T14:16:08,279 /usr/include/c++/8/bits/vector.tcc: In function ‘toml::result, toml::detail::region >, std::__cxx11::basic_string > toml::detail::parse_array(toml::detail::location&) [with Container = std::vector]’: 2023-05-23T14:16:08,280 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:16:08,281 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:16:08,281 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:16:15,056 [20/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/frame.cpp.o 2023-05-23T14:16:30,755 [21/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/residue.cpp.o 2023-05-23T14:16:40,361 [22/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/selection.cpp.o 2023-05-23T14:16:49,060 [23/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/BinaryFile.cpp.o 2023-05-23T14:16:56,648 [24/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/Bz2File.cpp.o 2023-05-23T14:16:59,470 [25/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/trajectory.cpp.o 2023-05-23T14:17:07,928 [26/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/capi/topology.cpp.o 2023-05-23T14:17:09,378 [27/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/GzFile.cpp.o 2023-05-23T14:17:17,232 [28/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/MemoryBuffer.cpp.o 2023-05-23T14:17:24,540 [29/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/MemoryFile.cpp.o 2023-05-23T14:17:40,142 [30/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/PlainFile.cpp.o 2023-05-23T14:17:42,470 [31/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/TNGFile.cpp.o 2023-05-23T14:17:48,396 [32/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/XDRFile.cpp.o 2023-05-23T14:17:52,177 [33/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/Netcdf3File.cpp.o 2023-05-23T14:18:01,958 [34/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/files/XzFile.cpp.o 2023-05-23T14:18:24,881 [35/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/AmberNetCDF.cpp.o 2023-05-23T14:18:24,883 In file included from /usr/include/c++/8/map:61, 2023-05-23T14:18:24,883 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/include/chemfiles/Property.hpp:9, 2023-05-23T14:18:24,884 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/include/chemfiles/Atom.hpp:11, 2023-05-23T14:18:24,884 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/include/chemfiles/Topology.hpp:11, 2023-05-23T14:18:24,885 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/include/chemfiles/Frame.hpp:15, 2023-05-23T14:18:24,885 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:18: 2023-05-23T14:18:24,886 /usr/include/c++/8/bits/stl_map.h: In function ‘std::map<_Key, _Tp, _Compare, _Alloc>::map(std::initializer_list >, const _Compare&, const allocator_type&) [with _Key = std::__cxx11::basic_string; _Tp = chemfiles::netcdf3::Value; _Compare = std::less >; _Alloc = std::allocator, chemfiles::netcdf3::Value> >]’: 2023-05-23T14:18:24,886 /usr/include/c++/8/bits/stl_map.h:226:7: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,887 map(initializer_list __l, 2023-05-23T14:18:24,887 ^~~ 2023-05-23T14:18:24,888 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp: In member function ‘virtual void chemfiles::AmberTrajectory::initialize(const chemfiles::Frame&)’: 2023-05-23T14:18:24,888 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:501:25: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,888 builder.add_variable("coordinates", { 2023-05-23T14:18:24,889 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,889 /* type = */ netcdf3::constants::NC_FLOAT, 2023-05-23T14:18:24,890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,890 /* dimensions = */ {frame_dim, atom_dim, spatial_dim}, 2023-05-23T14:18:24,891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,891 /* attributes = */ {{"units", netcdf3::Value("angstrom")}} 2023-05-23T14:18:24,892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,892 }); 2023-05-23T14:18:24,893 ~~ 2023-05-23T14:18:24,893 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:507:25: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,894 builder.add_variable("cell_lengths", { 2023-05-23T14:18:24,894 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,895 /* type = */ netcdf3::constants::NC_FLOAT, 2023-05-23T14:18:24,895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,896 /* dimensions = */ {frame_dim, cell_spatial_dim}, 2023-05-23T14:18:24,896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,897 /* attributes = */ {{"units", netcdf3::Value("angstrom")}} 2023-05-23T14:18:24,897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,898 }); 2023-05-23T14:18:24,898 ~~ 2023-05-23T14:18:24,899 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:513:25: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,899 builder.add_variable("cell_angles", { 2023-05-23T14:18:24,900 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,900 /* type = */ netcdf3::constants::NC_FLOAT, 2023-05-23T14:18:24,911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,911 /* dimensions = */ {frame_dim, cell_angular_dim}, 2023-05-23T14:18:24,912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,912 /* attributes = */ {{"units", netcdf3::Value("degree")}} 2023-05-23T14:18:24,913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,913 }); 2023-05-23T14:18:24,914 ~~ 2023-05-23T14:18:24,914 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:520:29: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,915 builder.add_variable("velocities", { 2023-05-23T14:18:24,915 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,916 /* type = */ netcdf3::constants::NC_FLOAT, 2023-05-23T14:18:24,916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,917 /* dimensions = */ {frame_dim, atom_dim, spatial_dim}, 2023-05-23T14:18:24,917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,918 /* attributes = */ {{"units", netcdf3::Value("angstrom/picosecond")}}, 2023-05-23T14:18:24,918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,919 }); 2023-05-23T14:18:24,919 ~~ 2023-05-23T14:18:24,920 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp: In member function ‘virtual void chemfiles::AmberRestart::initialize(const chemfiles::Frame&)’: 2023-05-23T14:18:24,920 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:622:25: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,921 builder.add_variable("coordinates", { 2023-05-23T14:18:24,921 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,923 /* type = */ netcdf3::constants::NC_DOUBLE, 2023-05-23T14:18:24,924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,925 /* dimensions = */ {atom_dim, spatial_dim}, 2023-05-23T14:18:24,926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,926 /* attributes = */ {{"units", netcdf3::Value("angstrom")}} 2023-05-23T14:18:24,927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,928 }); 2023-05-23T14:18:24,928 ~~ 2023-05-23T14:18:24,929 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:628:25: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,929 builder.add_variable("cell_lengths", { 2023-05-23T14:18:24,930 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,930 /* type = */ netcdf3::constants::NC_DOUBLE, 2023-05-23T14:18:24,931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,932 /* dimensions = */ {cell_spatial_dim}, 2023-05-23T14:18:24,933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,933 /* attributes = */ {{"units", netcdf3::Value("angstrom")}} 2023-05-23T14:18:24,934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,934 }); 2023-05-23T14:18:24,934 ~~ 2023-05-23T14:18:24,935 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:634:25: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,935 builder.add_variable("cell_angles", { 2023-05-23T14:18:24,936 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,936 /* type = */ netcdf3::constants::NC_DOUBLE, 2023-05-23T14:18:24,937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,937 /* dimensions = */ {cell_angular_dim}, 2023-05-23T14:18:24,938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,938 /* attributes = */ {{"units", netcdf3::Value("degree")}} 2023-05-23T14:18:24,938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,939 }); 2023-05-23T14:18:24,939 ~~ 2023-05-23T14:18:24,940 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:641:29: note: parameter passing for argument of type ‘std::initializer_list, chemfiles::netcdf3::Value> >’ changed in GCC 7.1 2023-05-23T14:18:24,940 builder.add_variable("velocities", { 2023-05-23T14:18:24,941 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,942 /* type = */ netcdf3::constants::NC_DOUBLE, 2023-05-23T14:18:24,943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,943 /* dimensions = */ {atom_dim, spatial_dim}, 2023-05-23T14:18:24,944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,944 /* attributes = */ {{"units", netcdf3::Value("angstrom/femptosecond")}} 2023-05-23T14:18:24,945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:24,946 }); 2023-05-23T14:18:24,947 ~~ 2023-05-23T14:18:24,948 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp: In member function ‘void chemfiles::AmberNetCDFBase::read_array(chemfiles::AmberNetCDFBase::variable_scale_t&, chemfiles::span)’: 2023-05-23T14:18:24,949 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:320:6: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2023-05-23T14:18:24,950 void AmberNetCDFBase::read_array(variable_scale_t& variable, span array) { 2023-05-23T14:18:24,951 ^~~~~~~~~~~~~~~ 2023-05-23T14:18:24,951 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp: In member function ‘void chemfiles::AmberNetCDFBase::write_array(chemfiles::AmberNetCDFBase::variable_scale_t&, chemfiles::span)’: 2023-05-23T14:18:24,952 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/AmberNetCDF.cpp:382:6: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2023-05-23T14:18:24,952 void AmberNetCDFBase::write_array(variable_scale_t& variable, span array) { 2023-05-23T14:18:24,953 ^~~~~~~~~~~~~~~ 2023-05-23T14:18:38,190 [36/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/CSSR.cpp.o 2023-05-23T14:18:44,690 [37/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/CML.cpp.o 2023-05-23T14:18:46,023 [38/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/DCD.cpp.o 2023-05-23T14:18:46,024 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:18:46,024 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/include/chemfiles/utils.hpp:7, 2023-05-23T14:18:46,025 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/DCD.cpp:9: 2023-05-23T14:18:46,025 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const chemfiles::DCDFormat::fixed_atom_data_t&}; _Tp = chemfiles::DCDFormat::fixed_atom_data_t; _Alloc = std::allocator]’: 2023-05-23T14:18:46,026 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:18:46,026 vector<_Tp, _Alloc>:: 2023-05-23T14:18:46,027 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:18:46,027 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:18:46,027 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/include/chemfiles/utils.hpp:7, 2023-05-23T14:18:46,028 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/DCD.cpp:9: 2023-05-23T14:18:46,028 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::DCDFormat::read_header()’: 2023-05-23T14:18:46,028 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:18:46,029 _M_realloc_insert(end(), __x); 2023-05-23T14:18:46,029 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:18:46,030 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:18:46,030 _M_realloc_insert(end(), __x); 2023-05-23T14:18:46,031 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:18:55,853 [39/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/GRO.cpp.o 2023-05-23T14:19:18,200 [40/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/CIF.cpp.o 2023-05-23T14:19:18,204 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:19:18,205 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/CIF.cpp:11: 2023-05-23T14:19:18,206 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2023-05-23T14:19:18,206 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:19:18,207 vector<_Tp, _Alloc>:: 2023-05-23T14:19:18,207 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:19:18,208 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:19:18,208 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/CIF.cpp:11: 2023-05-23T14:19:18,209 /usr/include/c++/8/bits/stl_vector.h: In member function ‘std::vector gemmi::SmallStructure::get_all_unit_cell_sites() const’: 2023-05-23T14:19:18,209 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:18,210 _M_realloc_insert(end(), __x); 2023-05-23T14:19:18,210 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:18,211 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:18,211 _M_realloc_insert(end(), __x); 2023-05-23T14:19:18,212 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:18,212 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:19:18,213 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/CIF.cpp:11: 2023-05-23T14:19:18,213 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::AtomType&}; _Tp = gemmi::SmallStructure::AtomType; _Alloc = std::allocator]’: 2023-05-23T14:19:18,214 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:19:18,215 vector<_Tp, _Alloc>:: 2023-05-23T14:19:18,215 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:19:18,216 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2023-05-23T14:19:18,216 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:19:18,217 /usr/include/c++/8/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’: 2023-05-23T14:19:18,217 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:18,217 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:19:18,218 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:18,218 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:19:18,219 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/CIF.cpp:11: 2023-05-23T14:19:18,219 /usr/include/c++/8/bits/stl_vector.h: In function ‘gemmi::SmallStructure gemmi::make_small_structure_from_block(const gemmi::cif::Block&)’: 2023-05-23T14:19:18,220 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:18,220 _M_realloc_insert(end(), __x); 2023-05-23T14:19:18,251 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:18,252 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:18,253 _M_realloc_insert(end(), __x); 2023-05-23T14:19:18,253 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:18,254 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:19:18,254 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/CIF.cpp:11: 2023-05-23T14:19:18,255 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure&}; _Tp = gemmi::SmallStructure; _Alloc = std::allocator]’: 2023-05-23T14:19:18,256 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:19:18,256 vector<_Tp, _Alloc>:: 2023-05-23T14:19:18,257 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:19:18,257 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:19:18,258 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/CIF.cpp:11: 2023-05-23T14:19:18,259 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::CIFFormat::init_()’: 2023-05-23T14:19:18,259 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:18,260 _M_realloc_insert(end(), __x); 2023-05-23T14:19:18,260 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:34,544 [41/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSData.cpp.o 2023-05-23T14:19:34,545 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:19:34,546 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/LAMMPSData.cpp:11: 2023-05-23T14:19:34,546 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: 2023-05-23T14:19:34,547 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, double>, std::allocator, double> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double>, std::allocator, double> > > >’} changed in GCC 7.1 2023-05-23T14:19:34,547 vector<_Tp, _Alloc>:: 2023-05-23T14:19:34,548 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:19:34,548 /usr/include/c++/8/bits/vector.tcc: In constructor ‘chemfiles::DataTypes::DataTypes(const chemfiles::Topology&)’: 2023-05-23T14:19:34,549 /usr/include/c++/8/bits/vector.tcc:343:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double>, std::allocator, double> > > >’ changed in GCC 7.1 2023-05-23T14:19:34,550 _M_realloc_insert(begin() + __n, std::move(__v)); 2023-05-23T14:19:34,550 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:40,916 [42/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSTrajectory.cpp.o 2023-05-23T14:19:45,465 [43/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/MOL2.cpp.o 2023-05-23T14:19:47,807 [44/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/Molfile.cpp.o 2023-05-23T14:19:47,808 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:19:47,808 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/Molfile.cpp:14: 2023-05-23T14:19:47,809 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Frame}; _Tp = chemfiles::Frame; _Alloc = std::allocator]’: 2023-05-23T14:19:47,809 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:19:47,810 vector<_Tp, _Alloc>:: 2023-05-23T14:19:47,811 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:19:47,811 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::Molfile::read(chemfiles::Frame&) [with chemfiles::MolfileFormat F = (chemfiles::MolfileFormat)1]’: 2023-05-23T14:19:47,812 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:47,812 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:19:47,813 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:47,813 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::Molfile::read(chemfiles::Frame&) [with chemfiles::MolfileFormat F = (chemfiles::MolfileFormat)2]’: 2023-05-23T14:19:47,814 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:47,815 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:19:47,816 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:19:47,816 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::Molfile::read(chemfiles::Frame&) [with chemfiles::MolfileFormat F = (chemfiles::MolfileFormat)3]’: 2023-05-23T14:19:47,817 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:19:47,818 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:19:47,818 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:24,432 [45/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/SDF.cpp.o 2023-05-23T14:20:31,687 [46/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/TNG.cpp.o 2023-05-23T14:20:31,688 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:20:31,688 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/TNG.cpp:9: 2023-05-23T14:20:31,689 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: 2023-05-23T14:20:31,689 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:20:31,690 vector<_Tp, _Alloc>:: 2023-05-23T14:20:31,690 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:20:31,691 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:20:31,691 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/TNG.cpp:9: 2023-05-23T14:20:31,692 /usr/include/c++/8/bits/stl_vector.h: In constructor ‘chemfiles::TNGFormat::TNGFormat(std::__cxx11::string, chemfiles::File::Mode, chemfiles::File::Compression)’: 2023-05-23T14:20:31,693 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:31,693 _M_realloc_insert(end(), __x); 2023-05-23T14:20:31,694 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:37,509 [47/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/PDB.cpp.o 2023-05-23T14:20:37,510 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:20:37,511 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/PDB.cpp:12: 2023-05-23T14:20:37,511 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: 2023-05-23T14:20:37,512 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:20:37,512 vector<_Tp, _Alloc>:: 2023-05-23T14:20:37,513 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:20:37,513 /usr/include/c++/8/bits/vector.tcc: In member function ‘virtual void chemfiles::PDBFormat::write_next(const chemfiles::Frame&)’: 2023-05-23T14:20:37,514 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:37,514 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:20:37,515 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:37,515 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:37,516 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:20:37,516 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:49,636 [48/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/SMI.cpp.o 2023-05-23T14:20:49,637 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:20:49,638 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/SMI.cpp:14: 2023-05-23T14:20:49,638 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Residue}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2023-05-23T14:20:49,638 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:20:49,639 vector<_Tp, _Alloc>:: 2023-05-23T14:20:49,639 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:20:49,640 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {chemfiles::Residue}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2023-05-23T14:20:49,640 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:49,641 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:20:49,641 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:49,642 /usr/include/c++/8/bits/vector.tcc: In member function ‘virtual void chemfiles::SMIFormat::read_next(chemfiles::Frame&)’: 2023-05-23T14:20:49,642 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:49,643 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:20:49,643 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:50,481 [49/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/TPR.cpp.o 2023-05-23T14:20:50,481 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:20:50,482 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/TPR.cpp:12: 2023-05-23T14:20:50,482 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ResidueInfo&}; _Tp = ResidueInfo; _Alloc = std::allocator]’: 2023-05-23T14:20:50,483 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:20:50,484 vector<_Tp, _Alloc>:: 2023-05-23T14:20:50,484 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:20:50,485 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Residue&}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2023-05-23T14:20:50,485 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:20:50,486 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AtomProperties&}; _Tp = AtomProperties; _Alloc = std::allocator]’: 2023-05-23T14:20:50,486 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:20:50,487 /usr/include/c++/8/bits/vector.tcc: In lambda function: 2023-05-23T14:20:50,487 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:50,488 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:20:50,488 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:50,489 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:50,490 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:20:50,495 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:50,495 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::TPRFormat::read_topology(chemfiles::Frame&)’: 2023-05-23T14:20:50,496 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:50,497 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:20:50,497 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:55,821 [50/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/MMTF.cpp.o 2023-05-23T14:20:55,822 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:20:55,823 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/MMTF.cpp:8: 2023-05-23T14:20:55,823 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Residue&}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2023-05-23T14:20:55,824 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:20:55,824 vector<_Tp, _Alloc>:: 2023-05-23T14:20:55,825 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:20:55,825 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::MMTFFormat::apply_symmetry(chemfiles::Frame&)’: 2023-05-23T14:20:55,826 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:20:55,827 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:20:55,827 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:20:55,828 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/MMTF.cpp: In member function ‘void chemfiles::MMTFFormat::read_group(chemfiles::Frame&, size_t, chemfiles::Residue&, chemfiles::span)’: 2023-05-23T14:20:55,828 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/MMTF.cpp:294:6: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2023-05-23T14:20:55,829 void MMTFFormat::read_group(Frame& frame, size_t group_type, Residue& residue, span positions) { 2023-05-23T14:20:55,829 ^~~~~~~~~~ 2023-05-23T14:20:55,830 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/MMTF.cpp: In member function ‘void chemfiles::MMTFFormat::read_model(chemfiles::Frame&)’: 2023-05-23T14:20:55,830 /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/MMTF.cpp:235:23: note: parameter passing for argument of type ‘chemfiles::span’ changed in GCC 7.1 2023-05-23T14:20:55,832 read_group(frame, group_type, residue, positions); 2023-05-23T14:20:55,833 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-23T14:21:08,168 [51/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/TRR.cpp.o 2023-05-23T14:21:08,169 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:21:08,170 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/TRR.cpp:9: 2023-05-23T14:21:08,170 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2023-05-23T14:21:08,171 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:21:08,171 vector<_Tp, _Alloc>:: 2023-05-23T14:21:08,172 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:21:08,172 /usr/include/c++/8/bits/vector.tcc: In member function ‘void chemfiles::TRRFormat::determine_frame_offsets()’: 2023-05-23T14:21:08,173 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:21:08,174 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:21:08,174 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:21:21,793 [52/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/XTC.cpp.o 2023-05-23T14:21:26,236 [53/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/Tinker.cpp.o 2023-05-23T14:21:28,314 [54/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/guess_format.cpp.o 2023-05-23T14:21:48,894 [55/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/mmCIF.cpp.o 2023-05-23T14:21:48,895 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:21:48,895 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/mmCIF.cpp:8: 2023-05-23T14:21:48,896 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2023-05-23T14:21:48,897 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:21:48,898 vector<_Tp, _Alloc>:: 2023-05-23T14:21:48,898 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:21:48,899 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::Residue}; _Tp = chemfiles::Residue; _Alloc = std::allocator]’: 2023-05-23T14:21:48,900 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:21:48,900 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:21:48,901 In file included from /usr/include/c++/8/vector:64, 2023-05-23T14:21:48,902 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/mmCIF.cpp:8: 2023-05-23T14:21:48,902 /usr/include/c++/8/bits/stl_vector.h: In member function ‘void chemfiles::mmCIFFormat::init_()’: 2023-05-23T14:21:48,903 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:21:48,903 _M_realloc_insert(end(), __x); 2023-05-23T14:21:48,904 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:21:48,904 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:21:48,906 _M_realloc_insert(end(), __x); 2023-05-23T14:21:48,906 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:21:48,907 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:21:48,907 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/formats/mmCIF.cpp:8: 2023-05-23T14:21:48,908 /usr/include/c++/8/bits/vector.tcc: In member function ‘virtual void chemfiles::mmCIFFormat::read(chemfiles::Frame&)’: 2023-05-23T14:21:48,909 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-23T14:21:48,909 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-23T14:21:48,910 ^~~~~~~~~~~~~~~~~ 2023-05-23T14:21:51,749 [56/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/periodic_table.cpp.o 2023-05-23T14:21:52,402 [57/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/parse.cpp.o 2023-05-23T14:21:56,316 [58/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/formats/XYZ.cpp.o 2023-05-23T14:21:58,729 [59/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/selections/NumericValues.cpp.o 2023-05-23T14:22:04,847 [60/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/utils.cpp.o 2023-05-23T14:22:07,958 [61/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/warnings.cpp.o 2023-05-23T14:22:09,340 [62/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/adler32.c.o 2023-05-23T14:22:10,120 [63/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/compress.c.o 2023-05-23T14:22:12,369 [64/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/pdb_connectivity.cpp.o 2023-05-23T14:22:12,568 [65/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/crc32.c.o 2023-05-23T14:22:13,117 [66/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/gzclose.c.o 2023-05-23T14:22:15,007 [67/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/gzlib.c.o 2023-05-23T14:22:16,833 [68/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/gzread.c.o 2023-05-23T14:22:19,166 [69/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/gzwrite.c.o 2023-05-23T14:22:20,193 [70/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/deflate.c.o 2023-05-23T14:22:24,060 [71/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/infback.c.o 2023-05-23T14:22:26,133 [72/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/inflate.c.o 2023-05-23T14:22:26,380 [73/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/inftrees.c.o 2023-05-23T14:22:28,619 [74/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/inffast.c.o 2023-05-23T14:22:29,256 [75/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/uncompr.c.o 2023-05-23T14:22:30,166 [76/180] Building C object lib/external/zlib/CMakeFiles/zlib.dir/zutil.c.o 2023-05-23T14:22:30,424 [77/180] Building CXX object lib/CMakeFiles/chemfiles_objects.dir/src/selections/lexer.cpp.o 2023-05-23T14:22:30,425 In file included from /usr/include/c++/8/vector:69, 2023-05-23T14:22:30,426 from /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/lib/src/selections/lexer.cpp:8: 2023-05-23T14:22:30,426 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {chemfiles::selections::Token}; _Tp = chemfiles::selections::Token; _Alloc = std::allocator]’: 2023-05-23T14:22:30,427 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2023-05-23T14:22:30,427 vector<_Tp, _Alloc>:: 2023-05-23T14:22:30,428 ^~~~~~~~~~~~~~~~~~~ 2023-05-23T14:22:30,428 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) 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lib/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc3.c.o 2023-05-23T14:23:26,136 [174/180] Building C object lib/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc2.c.o 2023-05-23T14:23:30,183 [175/180] Building C object lib/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o 2023-05-23T14:23:30,491 [176/180] Building C object lib/external/molfiles/CMakeFiles/molfiles.dir/src/psfplugin.c.o 2023-05-23T14:23:31,047 [177/180] Building CXX object lib/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o 2023-05-23T14:23:49,910 [178/180] Building C object lib/external/tng/CMakeFiles/tng_io.dir/src/lib/tng_io.c.o 2023-05-23T14:24:05,930 [179/180] Building CXX object lib/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o 2023-05-23T14:24:11,614 [180/180] Linking CXX shared library lib/libchemfiles.so 2023-05-23T14:24:11,978 -- Install configuration: "Release" 2023-05-23T14:24:11,981 -- Installing: /tmp/pip-wheel-oht301yb/chemfiles_3456329004ad4dea99dac36249b0db0d/build/lib.linux-armv7l-cpython-37/chemfiles/libchemfiles.so 2023-05-23T14:24:12,454 installing to build/bdist.linux-armv7l/wheel 2023-05-23T14:24:12,455 running install 2023-05-23T14:24:12,516 running install_lib 2023-05-23T14:24:12,534 creating build/bdist.linux-armv7l 2023-05-23T14:24:12,535 creating build/bdist.linux-armv7l/wheel 2023-05-23T14:24:12,539 creating build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,541 copying build/lib.linux-armv7l-cpython-37/chemfiles/residue.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,546 copying build/lib.linux-armv7l-cpython-37/chemfiles/atom.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,551 copying build/lib.linux-armv7l-cpython-37/chemfiles/frame.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,556 copying build/lib.linux-armv7l-cpython-37/chemfiles/_c_api.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,563 copying build/lib.linux-armv7l-cpython-37/chemfiles/property.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,566 copying build/lib.linux-armv7l-cpython-37/chemfiles/__init__.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,570 copying build/lib.linux-armv7l-cpython-37/chemfiles/utils.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,574 copying build/lib.linux-armv7l-cpython-37/chemfiles/misc.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,579 copying build/lib.linux-armv7l-cpython-37/chemfiles/cell.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,583 copying build/lib.linux-armv7l-cpython-37/chemfiles/libchemfiles.so -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,809 copying build/lib.linux-armv7l-cpython-37/chemfiles/topology.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,815 copying build/lib.linux-armv7l-cpython-37/chemfiles/selection.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,819 copying build/lib.linux-armv7l-cpython-37/chemfiles/_c_lib.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,824 copying build/lib.linux-armv7l-cpython-37/chemfiles/trajectory.py -> build/bdist.linux-armv7l/wheel/chemfiles 2023-05-23T14:24:12,828 running install_egg_info 2023-05-23T14:24:12,889 running egg_info 2023-05-23T14:24:12,902 writing src/chemfiles.egg-info/PKG-INFO 2023-05-23T14:24:12,906 writing dependency_links to src/chemfiles.egg-info/dependency_links.txt 2023-05-23T14:24:12,910 writing requirements to src/chemfiles.egg-info/requires.txt 2023-05-23T14:24:12,914 writing top-level names to src/chemfiles.egg-info/top_level.txt 2023-05-23T14:24:12,938 reading manifest file 'src/chemfiles.egg-info/SOURCES.txt' 2023-05-23T14:24:13,021 reading manifest template 'MANIFEST.in' 2023-05-23T14:24:13,023 warning: no files found matching '*' under directory 'chemfiles' 2023-05-23T14:24:13,217 no previously-included directories found matching 'lib/tests' 2023-05-23T14:24:13,219 no previously-included directories found matching 'lib/doc' 2023-05-23T14:24:13,220 adding license file 'LICENSE' 2023-05-23T14:24:13,253 writing manifest file 'src/chemfiles.egg-info/SOURCES.txt' 2023-05-23T14:24:13,258 Copying src/chemfiles.egg-info to build/bdist.linux-armv7l/wheel/chemfiles-0.10.4-py3.7.egg-info 2023-05-23T14:24:13,285 running install_scripts 2023-05-23T14:24:13,373 creating build/bdist.linux-armv7l/wheel/chemfiles-0.10.4.dist-info/WHEEL 2023-05-23T14:24:13,380 creating '/tmp/pip-wheel-r4p4tzuo/.tmp-z_uq266u/chemfiles-0.10.4-py2.py3-none-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-23T14:24:13,386 adding 'chemfiles/__init__.py' 2023-05-23T14:24:13,395 adding 'chemfiles/_c_api.py' 2023-05-23T14:24:13,398 adding 'chemfiles/_c_lib.py' 2023-05-23T14:24:13,403 adding 'chemfiles/atom.py' 2023-05-23T14:24:13,406 adding 'chemfiles/cell.py' 2023-05-23T14:24:13,411 adding 'chemfiles/frame.py' 2023-05-23T14:24:14,989 adding 'chemfiles/libchemfiles.so' 2023-05-23T14:24:15,049 adding 'chemfiles/misc.py' 2023-05-23T14:24:15,052 adding 'chemfiles/property.py' 2023-05-23T14:24:15,056 adding 'chemfiles/residue.py' 2023-05-23T14:24:15,059 adding 'chemfiles/selection.py' 2023-05-23T14:24:15,063 adding 'chemfiles/topology.py' 2023-05-23T14:24:15,067 adding 'chemfiles/trajectory.py' 2023-05-23T14:24:15,070 adding 'chemfiles/utils.py' 2023-05-23T14:24:15,075 adding 'chemfiles-0.10.4.dist-info/LICENSE' 2023-05-23T14:24:15,077 adding 'chemfiles-0.10.4.dist-info/METADATA' 2023-05-23T14:24:15,080 adding 'chemfiles-0.10.4.dist-info/WHEEL' 2023-05-23T14:24:15,082 adding 'chemfiles-0.10.4.dist-info/top_level.txt' 2023-05-23T14:24:15,083 adding 'chemfiles-0.10.4.dist-info/RECORD' 2023-05-23T14:24:15,142 removing build/bdist.linux-armv7l/wheel 2023-05-23T14:24:15,299 Building wheel for chemfiles (pyproject.toml): finished with status 'done' 2023-05-23T14:24:15,389 Created wheel for chemfiles: filename=chemfiles-0.10.4-py2.py3-none-linux_armv7l.whl size=1303013 sha256=c4b803429e4a611c5a9cd5f83d41a8e218223cd430444fee2f4bd2849b0ad722 2023-05-23T14:24:15,392 Stored in directory: /tmp/pip-ephem-wheel-cache-h1bibsjq/wheels/d6/7f/df/3895b70b4a6d8e2399747e61597f04dc2cd4d2c08c5046cd93 2023-05-23T14:24:15,422 Successfully built chemfiles 2023-05-23T14:24:15,525 Removed build tracker: '/tmp/pip-build-tracker-x9d_8rzj'