2023-05-25T08:40:40,296 Created temporary directory: /tmp/pip-build-tracker-t9gqd58c 2023-05-25T08:40:40,299 Initialized build tracking at /tmp/pip-build-tracker-t9gqd58c 2023-05-25T08:40:40,300 Created build tracker: /tmp/pip-build-tracker-t9gqd58c 2023-05-25T08:40:40,300 Entered build tracker: /tmp/pip-build-tracker-t9gqd58c 2023-05-25T08:40:40,302 Created temporary directory: /tmp/pip-wheel-hzcpcfh1 2023-05-25T08:40:40,310 Created temporary directory: /tmp/pip-ephem-wheel-cache-7q_gt859 2023-05-25T08:40:40,362 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-25T08:40:40,370 2 location(s) to search for versions of pywfa: 2023-05-25T08:40:40,370 * https://pypi.org/simple/pywfa/ 2023-05-25T08:40:40,370 * https://www.piwheels.org/simple/pywfa/ 2023-05-25T08:40:40,371 Fetching project page and analyzing links: https://pypi.org/simple/pywfa/ 2023-05-25T08:40:40,372 Getting page https://pypi.org/simple/pywfa/ 2023-05-25T08:40:40,376 Found index url https://pypi.org/simple/ 2023-05-25T08:40:40,561 Fetched page https://pypi.org/simple/pywfa/ as application/vnd.pypi.simple.v1+json 2023-05-25T08:40:40,568 Found link https://files.pythonhosted.org/packages/a2/27/edbaabe18d863b40b4d0cd143105f8d5ef889e0c58ebab5c7a5f80a41830/pywfa-0.2.5.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.5 2023-05-25T08:40:40,570 Found link https://files.pythonhosted.org/packages/0f/01/3aea5a52a6a625fb3ef0c31f516dcdb4e89ba12e21a24bd3678532f67dd2/pywfa-0.2.6.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.6 2023-05-25T08:40:40,570 Skipping link: No binaries permitted for pywfa: https://files.pythonhosted.org/packages/69/57/98c7fbf1d497771c732435d02190081514460a8d3518165d5e599ac639dc/pywfa-0.2.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,572 Found link https://files.pythonhosted.org/packages/44/b4/f6d5a8e853e18e6eda0358bff42f12f110003ef275b05bb19a4c34d575c7/pywfa-0.2.7.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.7 2023-05-25T08:40:40,573 Found link https://files.pythonhosted.org/packages/d5/2d/06abe85c9a4625ff663f04bf79a7236c2ff215b3a474091a98b61611aec1/pywfa-0.3.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.3.0 2023-05-25T08:40:40,575 Found link https://files.pythonhosted.org/packages/de/00/b037e1881f50f88d2a3f312a44f03d2430e8c58b3a5b81a005280a54c21a/pywfa-0.4.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.0 2023-05-25T08:40:40,576 Found link https://files.pythonhosted.org/packages/98/83/0b435c0c681ef8d9418b3d493342041189f3faf470d2dbfa384e7dd234cf/pywfa-0.4.1.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.1 2023-05-25T08:40:40,577 Found link https://files.pythonhosted.org/packages/5d/92/366a9f0a0a4b34e2650199861a377eddf7e9f24ecc5298efb81352dc7cee/pywfa-0.4.2.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.2 2023-05-25T08:40:40,579 Found link https://files.pythonhosted.org/packages/5a/90/b584ff58075d2949636d8afeee7af9c68169a8b15916d0eaab64e823b2f5/pywfa-0.5.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.5.0 2023-05-25T08:40:40,579 Fetching project page and analyzing links: https://www.piwheels.org/simple/pywfa/ 2023-05-25T08:40:40,580 Getting page https://www.piwheels.org/simple/pywfa/ 2023-05-25T08:40:40,583 Found index url https://www.piwheels.org/simple/ 2023-05-25T08:40:40,825 Fetched page https://www.piwheels.org/simple/pywfa/ as text/html 2023-05-25T08:40:40,846 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.2-py3-none-any.whl#sha256=d9564e7692d318eb5fb46303238ced3000b975f8a2548b171f2f72dc5410e12a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,847 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.1-cp39-cp39-linux_armv7l.whl#sha256=e0d6f23f24de0cabda8008b67244aea7d28ffe22dbc1763e81bdfa93dc7c29e4 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,847 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.1-cp39-cp39-linux_armv6l.whl#sha256=e0d6f23f24de0cabda8008b67244aea7d28ffe22dbc1763e81bdfa93dc7c29e4 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,848 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.1-cp37-cp37m-linux_armv7l.whl#sha256=a91d339019602489eb2ce6a054c0986595bbb0be2dc80366005ca64ff496c68e (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,849 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.1-cp37-cp37m-linux_armv6l.whl#sha256=a91d339019602489eb2ce6a054c0986595bbb0be2dc80366005ca64ff496c68e (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,849 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.0-cp39-cp39-linux_armv7l.whl#sha256=e0c72841834504d7295678419ce4b8f79b90594d2662ce233374250d343f456e (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,850 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.0-cp39-cp39-linux_armv6l.whl#sha256=e0c72841834504d7295678419ce4b8f79b90594d2662ce233374250d343f456e (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,850 Skipping link: No binaries permitted for pywfa: 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https://www.piwheels.org/simple/pywfa/pywfa-0.2.7-cp39-cp39-linux_armv7l.whl#sha256=4f8e40151734541a40568fbb2ed33bc1b6701c47b1ea500e6aeda45405750b38 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,854 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.7-cp39-cp39-linux_armv6l.whl#sha256=4f8e40151734541a40568fbb2ed33bc1b6701c47b1ea500e6aeda45405750b38 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,854 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.7-cp37-cp37m-linux_armv7l.whl#sha256=f3245e4e3e61f357e2961e756577d44968b16c48a13519f81f8572c6eed16859 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,855 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.7-cp37-cp37m-linux_armv6l.whl#sha256=f3245e4e3e61f357e2961e756577d44968b16c48a13519f81f8572c6eed16859 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,855 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.6-cp39-cp39-linux_armv7l.whl#sha256=25c2ae021d0c40c5b4c2002e4e94e0f7a48859772505ef4a423d1a881049b28f (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,856 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.6-cp39-cp39-linux_armv6l.whl#sha256=25c2ae021d0c40c5b4c2002e4e94e0f7a48859772505ef4a423d1a881049b28f (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,856 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.6-cp37-cp37m-linux_armv7l.whl#sha256=853686084d3af6af2ffddd3320c0f5627d6347b212a54e626900174e5d21097c (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,857 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.6-cp37-cp37m-linux_armv6l.whl#sha256=853686084d3af6af2ffddd3320c0f5627d6347b212a54e626900174e5d21097c (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,857 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp39-cp39-linux_armv7l.whl#sha256=d9c41aea18ead8981e0f0e6710c75bf07ed02642a29ec7308afe0f6a5187083a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,858 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp39-cp39-linux_armv6l.whl#sha256=d9c41aea18ead8981e0f0e6710c75bf07ed02642a29ec7308afe0f6a5187083a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,858 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp37-cp37m-linux_armv7l.whl#sha256=b39d17c222708e4ff97f3c3c659a7507d1c9141d6961659a72d6e6a00ad4cf6a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,859 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp37-cp37m-linux_armv6l.whl#sha256=b39d17c222708e4ff97f3c3c659a7507d1c9141d6961659a72d6e6a00ad4cf6a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-05-25T08:40:40,859 Skipping link: not a file: https://www.piwheels.org/simple/pywfa/ 2023-05-25T08:40:40,860 Skipping link: not a file: https://pypi.org/simple/pywfa/ 2023-05-25T08:40:40,894 Given no hashes to check 1 links for project 'pywfa': discarding no candidates 2023-05-25T08:40:40,925 Collecting pywfa==0.5.0 2023-05-25T08:40:40,930 Created temporary directory: /tmp/pip-unpack-dxgshr14 2023-05-25T08:40:41,380 Downloading pywfa-0.5.0.tar.gz (3.5 MB) 2023-05-25T08:40:43,868 Added pywfa==0.5.0 from https://files.pythonhosted.org/packages/5a/90/b584ff58075d2949636d8afeee7af9c68169a8b15916d0eaab64e823b2f5/pywfa-0.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-t9gqd58c' 2023-05-25T08:40:43,878 Created temporary directory: /tmp/pip-build-env-isyf4cv4 2023-05-25T08:40:43,899 Installing build dependencies: started 2023-05-25T08:40:43,902 Running command pip subprocess to install build dependencies 2023-05-25T08:40:46,606 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-05-25T08:40:47,392 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-25T08:40:51,275 Collecting setuptools>=61.0 2023-05-25T08:40:51,519 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB) 2023-05-25T08:40:54,992 Collecting cython 2023-05-25T08:40:55,013 Downloading https://www.piwheels.org/simple/cython/Cython-0.29.35-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2023-05-25T08:40:55,600 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 4.2 MB/s eta 0:00:00 2023-05-25T08:41:00,886 Installing collected packages: setuptools, cython 2023-05-25T08:41:10,423 Creating /tmp/pip-build-env-isyf4cv4/overlay/bin 2023-05-25T08:41:10,428 changing mode of /tmp/pip-build-env-isyf4cv4/overlay/bin/cygdb to 755 2023-05-25T08:41:10,433 changing mode of /tmp/pip-build-env-isyf4cv4/overlay/bin/cython to 755 2023-05-25T08:41:10,439 changing mode of /tmp/pip-build-env-isyf4cv4/overlay/bin/cythonize to 755 2023-05-25T08:41:10,487 Successfully installed cython-0.29.35 setuptools-67.8.0 2023-05-25T08:41:11,015 Installing build dependencies: finished with status 'done' 2023-05-25T08:41:11,026 Getting requirements to build wheel: started 2023-05-25T08:41:11,029 Running command Getting requirements to build wheel 2023-05-25T08:41:12,892 creating tmp 2023-05-25T08:41:12,893 cc -c /tmp/tmpg645c7k5.c -o tmp/tmpg645c7k5.o -Wno-unused-function 2023-05-25T08:41:13,052 cc -c /tmp/tmpl314vd65.c -o tmp/tmpl314vd65.o -Wno-unused-result 2023-05-25T08:41:13,197 cc -c /tmp/tmp5_pret7s.c -o tmp/tmp5_pret7s.o -Wno-ignored-qualifiers 2023-05-25T08:41:13,341 cc -c /tmp/tmpgk2orbew.c -o tmp/tmpgk2orbew.o -Wno-deprecated-declarations 2023-05-25T08:41:13,515 rm -rf bin build lib 2023-05-25T08:41:13,558 make 2023-05-25T08:41:13,579 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib' 2023-05-25T08:41:13,635 make --directory=alignment all 2023-05-25T08:41:13,667 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:41:13,667 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine_penalties.c -o ../build/affine_penalties.o 2023-05-25T08:41:14,211 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine2p_penalties.c -o ../build/affine2p_penalties.o 2023-05-25T08:41:14,656 cc -Wall -g -fPIC -O3 -march=native -I.. -c cigar.c -o ../build/cigar.o 2023-05-25T08:41:16,304 cc -Wall -g -fPIC -O3 -march=native -I.. -c score_matrix.c -o ../build/score_matrix.o 2023-05-25T08:41:17,001 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:41:17,003 make --directory=system all 2023-05-25T08:41:17,036 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:41:17,037 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_allocator.c -o ../build/mm_allocator.o 2023-05-25T08:41:18,541 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_stack.c -o ../build/mm_stack.o 2023-05-25T08:41:19,391 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_counter.c -o ../build/profiler_counter.o 2023-05-25T08:41:20,440 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_timer.c -o ../build/profiler_timer.o 2023-05-25T08:41:21,291 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:41:21,292 make --directory=utils all 2023-05-25T08:41:21,325 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:41:21,325 cc -Wall -g -fPIC -O3 -march=native -I.. -c bitmap.c -o ../build/bitmap.o 2023-05-25T08:41:21,969 cc -Wall -g -fPIC -O3 -march=native -I.. -c commons.c -o ../build/commons.o 2023-05-25T08:41:22,523 cc -Wall -g -fPIC -O3 -march=native -I.. -c dna_text.c -o ../build/dna_text.o 2023-05-25T08:41:22,978 cc -Wall -g -fPIC -O3 -march=native -I.. -c heatmap.c -o ../build/heatmap.o 2023-05-25T08:41:23,775 cc -Wall -g -fPIC -O3 -march=native -I.. -c sequence_buffer.c -o ../build/sequence_buffer.o 2023-05-25T08:41:24,411 cc -Wall -g -fPIC -O3 -march=native -I.. -c string_padded.c -o ../build/string_padded.o 2023-05-25T08:41:25,038 cc -Wall -g -fPIC -O3 -march=native -I.. -c vector.c -o ../build/vector.o 2023-05-25T08:41:25,685 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:41:25,686 make --directory=wavefront all 2023-05-25T08:41:25,720 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:41:25,720 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_align.c -o ../build/wavefront_align.o 2023-05-25T08:41:26,905 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_aligner.c -o ../build/wavefront_aligner.o 2023-05-25T08:41:27,364 wavefront_aligner.c: In function ‘wavefront_aligner_print_status’: 2023-05-25T08:41:27,364 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:41:27,365 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-05-25T08:41:27,366 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-25T08:41:27,366 wavefront_aligner.c:473:41: note: format string is defined here 2023-05-25T08:41:27,367 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-05-25T08:41:27,367 ~~^ 2023-05-25T08:41:27,368 %llu 2023-05-25T08:41:27,368 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:41:27,369 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-05-25T08:41:27,369 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-25T08:41:27,369 wavefront_aligner.c:473:48: note: format string is defined here 2023-05-25T08:41:27,369 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-05-25T08:41:27,370 ~~^ 2023-05-25T08:41:27,370 %llu 2023-05-25T08:41:28,114 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_attributes.c -o ../build/wavefront_attributes.o 2023-05-25T08:41:28,605 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_buffer.c -o ../build/wavefront_backtrace_buffer.o 2023-05-25T08:41:29,035 wavefront_backtrace_buffer.c: In function ‘wf_backtrace_buffer_compact_marked’: 2023-05-25T08:41:29,036 wavefront_backtrace_buffer.c:521:61: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-05-25T08:41:29,037 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-05-25T08:41:29,037 ~~^ 2023-05-25T08:41:29,037 %u 2023-05-25T08:41:29,038 wavefront_backtrace_buffer.c:521:71: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-05-25T08:41:29,038 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-05-25T08:41:29,039 ~~^ 2023-05-25T08:41:29,039 %u 2023-05-25T08:41:30,104 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_offload.c -o ../build/wavefront_backtrace_offload.o 2023-05-25T08:41:31,022 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace.c -o ../build/wavefront_backtrace.o 2023-05-25T08:41:32,747 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_bialign.c -o ../build/wavefront_bialign.o 2023-05-25T08:41:34,038 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_components.c -o ../build/wavefront_components.o 2023-05-25T08:41:35,207 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine.c -o ../build/wavefront_compute_affine.o 2023-05-25T08:41:36,125 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine2p.c -o ../build/wavefront_compute_affine2p.o 2023-05-25T08:41:37,345 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_edit.c -o ../build/wavefront_compute_edit.o 2023-05-25T08:41:38,452 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_linear.c -o ../build/wavefront_compute_linear.o 2023-05-25T08:41:39,232 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute.c -o ../build/wavefront_compute.o 2023-05-25T08:41:40,496 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_debug.c -o ../build/wavefront_debug.o 2023-05-25T08:41:40,924 wavefront_debug.c: In function ‘wavefront_report_lite’: 2023-05-25T08:41:40,925 wavefront_debug.c:138:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:41:40,925 fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used)); 2023-05-25T08:41:40,926 ~~^ 2023-05-25T08:41:40,926 %llu 2023-05-25T08:41:40,927 wavefront_debug.c: In function ‘wavefront_report_verbose_begin’: 2023-05-25T08:41:40,928 wavefront_debug.c:187:52: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:41:40,928 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:41:40,928 ~~^ 2023-05-25T08:41:40,929 %llu 2023-05-25T08:41:40,929 wavefront_debug.c:187:58: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:41:40,929 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:41:40,930 ~~^ 2023-05-25T08:41:40,930 %llu 2023-05-25T08:41:40,931 wavefront_debug.c:187:64: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:41:40,932 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:41:40,932 ~~^ 2023-05-25T08:41:40,933 %llu 2023-05-25T08:41:40,933 wavefront_debug.c: In function ‘wavefront_report_verbose_end’: 2023-05-25T08:41:40,934 wavefront_debug.c:201:48: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:41:40,934 fprintf(stream,"[WFA::Debug]\tMemory.used\t%luMB\n", 2023-05-25T08:41:40,934 ~~^ 2023-05-25T08:41:40,935 %llu 2023-05-25T08:41:41,383 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_display.c -o ../build/wavefront_display.o 2023-05-25T08:41:42,499 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_extend.c -o ../build/wavefront_extend.o 2023-05-25T08:41:43,619 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_heuristic.c -o ../build/wavefront_heuristic.o 2023-05-25T08:41:44,965 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_pcigar.c -o ../build/wavefront_pcigar.o 2023-05-25T08:41:46,005 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_penalties.c -o ../build/wavefront_penalties.o 2023-05-25T08:41:46,689 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_plot.c -o ../build/wavefront_plot.o 2023-05-25T08:41:47,635 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_slab.c -o ../build/wavefront_slab.o 2023-05-25T08:41:48,555 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront.c -o ../build/wavefront.o 2023-05-25T08:41:49,299 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:41:49,300 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-05-25T08:41:49,491 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib' 2023-05-25T08:41:49,495 make: Warning: File 'build' has modification time 1.5 s in the future 2023-05-25T08:41:49,524 make --directory=alignment all 2023-05-25T08:41:49,554 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:41:49,555 make[1]: Nothing to be done for 'all'. 2023-05-25T08:41:49,555 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:41:49,556 make --directory=system all 2023-05-25T08:41:49,588 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:41:49,589 make[1]: Nothing to be done for 'all'. 2023-05-25T08:41:49,589 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:41:49,590 make --directory=utils all 2023-05-25T08:41:49,623 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:41:49,624 make[1]: Nothing to be done for 'all'. 2023-05-25T08:41:49,624 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:41:49,625 make --directory=wavefront all 2023-05-25T08:41:49,664 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:41:49,664 make[1]: Warning: File '../build/wavefront_slab.o' has modification time 0.62 s in the future 2023-05-25T08:41:49,665 make[1]: Nothing to be done for 'all'. 2023-05-25T08:41:49,665 make[1]: warning: Clock skew detected. Your build may be incomplete. 2023-05-25T08:41:49,665 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:41:49,666 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-05-25T08:41:49,817 make: warning: Clock skew detected. Your build may be incomplete. 2023-05-25T08:41:53,910 Libs ['/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib'] 2023-05-25T08:41:53,911 Library dirs ['/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib'] 2023-05-25T08:41:53,911 Include dirs ['.', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/bindings/cpp', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa'] 2023-05-25T08:41:53,912 Compiling pywfa/align.pyx because it depends on /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/Cython/Includes/libc/string.pxd. 2023-05-25T08:41:53,912 [1/1] Cythonizing pywfa/align.pyx 2023-05-25T08:41:54,399 running egg_info 2023-05-25T08:41:54,415 writing pywfa.egg-info/PKG-INFO 2023-05-25T08:41:54,420 writing dependency_links to pywfa.egg-info/dependency_links.txt 2023-05-25T08:41:54,426 writing top-level names to pywfa.egg-info/top_level.txt 2023-05-25T08:41:54,472 reading manifest file 'pywfa.egg-info/SOURCES.txt' 2023-05-25T08:41:54,500 reading manifest template 'MANIFEST.in' 2023-05-25T08:41:54,590 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-05-25T08:41:54,591 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-05-25T08:41:54,591 warning: no files found matching 'WFA2_lib' under directory 'pywfa' 2023-05-25T08:41:54,618 adding license file 'LICENSE' 2023-05-25T08:41:54,645 writing manifest file 'pywfa.egg-info/SOURCES.txt' 2023-05-25T08:41:54,981 Getting requirements to build wheel: finished with status 'done' 2023-05-25T08:41:55,007 Installing backend dependencies: started 2023-05-25T08:41:55,010 Running command pip subprocess to install backend dependencies 2023-05-25T08:41:57,960 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-05-25T08:41:58,855 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-25T08:41:59,714 Collecting wheel 2023-05-25T08:41:59,757 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-05-25T08:42:04,016 Installing collected packages: wheel 2023-05-25T08:42:04,465 Creating /tmp/pip-build-env-isyf4cv4/normal/bin 2023-05-25T08:42:04,469 changing mode of /tmp/pip-build-env-isyf4cv4/normal/bin/wheel to 755 2023-05-25T08:42:04,495 Successfully installed wheel-0.40.0 2023-05-25T08:42:04,871 Installing backend dependencies: finished with status 'done' 2023-05-25T08:42:04,877 Created temporary directory: /tmp/pip-modern-metadata-kll41j9s 2023-05-25T08:42:04,884 Preparing metadata (pyproject.toml): started 2023-05-25T08:42:04,886 Running command Preparing metadata (pyproject.toml) 2023-05-25T08:42:06,681 cc -c /tmp/tmp_srn77of.c -o tmp/tmp_srn77of.o -Wno-unused-function 2023-05-25T08:42:06,828 cc -c /tmp/tmps0oil3y7.c -o tmp/tmps0oil3y7.o -Wno-unused-result 2023-05-25T08:42:06,977 cc -c /tmp/tmp7sngbg3r.c -o tmp/tmp7sngbg3r.o -Wno-ignored-qualifiers 2023-05-25T08:42:07,126 cc -c /tmp/tmptgbqjh3r.c -o tmp/tmptgbqjh3r.o -Wno-deprecated-declarations 2023-05-25T08:42:07,301 rm -rf bin build lib 2023-05-25T08:42:07,343 make 2023-05-25T08:42:07,363 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib' 2023-05-25T08:42:07,392 make --directory=alignment all 2023-05-25T08:42:07,423 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:42:07,424 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine_penalties.c -o ../build/affine_penalties.o 2023-05-25T08:42:07,876 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine2p_penalties.c -o ../build/affine2p_penalties.o 2023-05-25T08:42:08,319 cc -Wall -g -fPIC -O3 -march=native -I.. -c cigar.c -o ../build/cigar.o 2023-05-25T08:42:09,976 cc -Wall -g -fPIC -O3 -march=native -I.. -c score_matrix.c -o ../build/score_matrix.o 2023-05-25T08:42:10,668 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:42:10,669 make --directory=system all 2023-05-25T08:42:10,702 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:42:10,703 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_allocator.c -o ../build/mm_allocator.o 2023-05-25T08:42:12,196 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_stack.c -o ../build/mm_stack.o 2023-05-25T08:42:13,076 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_counter.c -o ../build/profiler_counter.o 2023-05-25T08:42:14,140 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_timer.c -o ../build/profiler_timer.o 2023-05-25T08:42:14,983 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:42:14,985 make --directory=utils all 2023-05-25T08:42:15,019 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:42:15,020 cc -Wall -g -fPIC -O3 -march=native -I.. -c bitmap.c -o ../build/bitmap.o 2023-05-25T08:42:15,663 cc -Wall -g -fPIC -O3 -march=native -I.. -c commons.c -o ../build/commons.o 2023-05-25T08:42:16,214 cc -Wall -g -fPIC -O3 -march=native -I.. -c dna_text.c -o ../build/dna_text.o 2023-05-25T08:42:16,668 cc -Wall -g -fPIC -O3 -march=native -I.. -c heatmap.c -o ../build/heatmap.o 2023-05-25T08:42:17,473 cc -Wall -g -fPIC -O3 -march=native -I.. -c sequence_buffer.c -o ../build/sequence_buffer.o 2023-05-25T08:42:18,103 cc -Wall -g -fPIC -O3 -march=native -I.. -c string_padded.c -o ../build/string_padded.o 2023-05-25T08:42:18,730 cc -Wall -g -fPIC -O3 -march=native -I.. -c vector.c -o ../build/vector.o 2023-05-25T08:42:19,355 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:42:19,357 make --directory=wavefront all 2023-05-25T08:42:19,389 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:42:19,389 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_align.c -o ../build/wavefront_align.o 2023-05-25T08:42:20,554 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_aligner.c -o ../build/wavefront_aligner.o 2023-05-25T08:42:20,985 wavefront_aligner.c: In function ‘wavefront_aligner_print_status’: 2023-05-25T08:42:20,985 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:42:20,986 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-05-25T08:42:20,986 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-25T08:42:20,987 wavefront_aligner.c:473:41: note: format string is defined here 2023-05-25T08:42:20,987 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-05-25T08:42:20,987 ~~^ 2023-05-25T08:42:20,988 %llu 2023-05-25T08:42:20,989 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:42:20,989 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-05-25T08:42:20,989 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-25T08:42:20,990 wavefront_aligner.c:473:48: note: format string is defined here 2023-05-25T08:42:20,990 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-05-25T08:42:20,991 ~~^ 2023-05-25T08:42:20,991 %llu 2023-05-25T08:42:21,735 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_attributes.c -o ../build/wavefront_attributes.o 2023-05-25T08:42:22,221 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_buffer.c -o ../build/wavefront_backtrace_buffer.o 2023-05-25T08:42:22,662 wavefront_backtrace_buffer.c: In function ‘wf_backtrace_buffer_compact_marked’: 2023-05-25T08:42:22,663 wavefront_backtrace_buffer.c:521:61: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-05-25T08:42:22,663 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-05-25T08:42:22,664 ~~^ 2023-05-25T08:42:22,664 %u 2023-05-25T08:42:22,665 wavefront_backtrace_buffer.c:521:71: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-05-25T08:42:22,665 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-05-25T08:42:22,666 ~~^ 2023-05-25T08:42:22,666 %u 2023-05-25T08:42:23,737 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_offload.c -o ../build/wavefront_backtrace_offload.o 2023-05-25T08:42:24,655 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace.c -o ../build/wavefront_backtrace.o 2023-05-25T08:42:26,402 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_bialign.c -o ../build/wavefront_bialign.o 2023-05-25T08:42:27,683 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_components.c -o ../build/wavefront_components.o 2023-05-25T08:42:28,865 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine.c -o ../build/wavefront_compute_affine.o 2023-05-25T08:42:29,760 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine2p.c -o ../build/wavefront_compute_affine2p.o 2023-05-25T08:42:30,960 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_edit.c -o ../build/wavefront_compute_edit.o 2023-05-25T08:42:32,068 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_linear.c -o ../build/wavefront_compute_linear.o 2023-05-25T08:42:32,835 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute.c -o ../build/wavefront_compute.o 2023-05-25T08:42:34,112 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_debug.c -o ../build/wavefront_debug.o 2023-05-25T08:42:34,542 wavefront_debug.c: In function ‘wavefront_report_lite’: 2023-05-25T08:42:34,542 wavefront_debug.c:138:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:42:34,543 fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used)); 2023-05-25T08:42:34,543 ~~^ 2023-05-25T08:42:34,544 %llu 2023-05-25T08:42:34,545 wavefront_debug.c: In function ‘wavefront_report_verbose_begin’: 2023-05-25T08:42:34,545 wavefront_debug.c:187:52: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:42:34,546 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:42:34,546 ~~^ 2023-05-25T08:42:34,546 %llu 2023-05-25T08:42:34,547 wavefront_debug.c:187:58: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:42:34,547 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:42:34,547 ~~^ 2023-05-25T08:42:34,548 %llu 2023-05-25T08:42:34,548 wavefront_debug.c:187:64: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:42:34,549 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:42:34,550 ~~^ 2023-05-25T08:42:34,550 %llu 2023-05-25T08:42:34,551 wavefront_debug.c: In function ‘wavefront_report_verbose_end’: 2023-05-25T08:42:34,551 wavefront_debug.c:201:48: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:42:34,552 fprintf(stream,"[WFA::Debug]\tMemory.used\t%luMB\n", 2023-05-25T08:42:34,552 ~~^ 2023-05-25T08:42:34,552 %llu 2023-05-25T08:42:34,998 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_display.c -o ../build/wavefront_display.o 2023-05-25T08:42:36,119 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_extend.c -o ../build/wavefront_extend.o 2023-05-25T08:42:37,229 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_heuristic.c -o ../build/wavefront_heuristic.o 2023-05-25T08:42:38,571 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_pcigar.c -o ../build/wavefront_pcigar.o 2023-05-25T08:42:39,607 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_penalties.c -o ../build/wavefront_penalties.o 2023-05-25T08:42:40,282 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_plot.c -o ../build/wavefront_plot.o 2023-05-25T08:42:41,202 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_slab.c -o ../build/wavefront_slab.o 2023-05-25T08:42:42,106 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront.c -o ../build/wavefront.o 2023-05-25T08:42:42,848 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:42:42,849 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-05-25T08:42:43,025 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib' 2023-05-25T08:42:43,027 make: Warning: File 'build' has modification time 1.5 s in the future 2023-05-25T08:42:43,056 make --directory=alignment all 2023-05-25T08:42:43,088 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:42:43,088 make[1]: Nothing to be done for 'all'. 2023-05-25T08:42:43,089 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:42:43,091 make --directory=system all 2023-05-25T08:42:43,123 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:42:43,123 make[1]: Nothing to be done for 'all'. 2023-05-25T08:42:43,124 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:42:43,125 make --directory=utils all 2023-05-25T08:42:43,158 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:42:43,158 make[1]: Nothing to be done for 'all'. 2023-05-25T08:42:43,159 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:42:43,160 make --directory=wavefront all 2023-05-25T08:42:43,195 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:42:43,195 make[1]: Warning: File '../build/wavefront_slab.o' has modification time 0.63 s in the future 2023-05-25T08:42:43,195 make[1]: Nothing to be done for 'all'. 2023-05-25T08:42:43,196 make[1]: warning: Clock skew detected. Your build may be incomplete. 2023-05-25T08:42:43,196 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:42:43,197 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-05-25T08:42:43,379 make: warning: Clock skew detected. Your build may be incomplete. 2023-05-25T08:42:44,648 Libs ['/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib'] 2023-05-25T08:42:44,648 Library dirs ['/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib'] 2023-05-25T08:42:44,649 Include dirs ['.', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/bindings/cpp', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa'] 2023-05-25T08:42:45,290 running dist_info 2023-05-25T08:42:45,304 creating /tmp/pip-modern-metadata-kll41j9s/pywfa.egg-info 2023-05-25T08:42:45,314 writing /tmp/pip-modern-metadata-kll41j9s/pywfa.egg-info/PKG-INFO 2023-05-25T08:42:45,320 writing dependency_links to /tmp/pip-modern-metadata-kll41j9s/pywfa.egg-info/dependency_links.txt 2023-05-25T08:42:45,325 writing top-level names to /tmp/pip-modern-metadata-kll41j9s/pywfa.egg-info/top_level.txt 2023-05-25T08:42:45,328 writing manifest file '/tmp/pip-modern-metadata-kll41j9s/pywfa.egg-info/SOURCES.txt' 2023-05-25T08:42:45,370 reading manifest file '/tmp/pip-modern-metadata-kll41j9s/pywfa.egg-info/SOURCES.txt' 2023-05-25T08:42:45,375 reading manifest template 'MANIFEST.in' 2023-05-25T08:42:45,464 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-05-25T08:42:45,464 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-05-25T08:42:45,465 warning: no files found matching 'WFA2_lib' under directory 'pywfa' 2023-05-25T08:42:45,493 adding license file 'LICENSE' 2023-05-25T08:42:45,513 writing manifest file '/tmp/pip-modern-metadata-kll41j9s/pywfa.egg-info/SOURCES.txt' 2023-05-25T08:42:45,515 creating '/tmp/pip-modern-metadata-kll41j9s/pywfa-0.5.0.dist-info' 2023-05-25T08:42:45,830 Preparing metadata (pyproject.toml): finished with status 'done' 2023-05-25T08:42:45,846 Source in /tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a has version 0.5.0, which satisfies requirement pywfa==0.5.0 from https://files.pythonhosted.org/packages/5a/90/b584ff58075d2949636d8afeee7af9c68169a8b15916d0eaab64e823b2f5/pywfa-0.5.0.tar.gz 2023-05-25T08:42:45,848 Removed pywfa==0.5.0 from https://files.pythonhosted.org/packages/5a/90/b584ff58075d2949636d8afeee7af9c68169a8b15916d0eaab64e823b2f5/pywfa-0.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-t9gqd58c' 2023-05-25T08:42:45,866 Created temporary directory: /tmp/pip-unpack-krsgghaf 2023-05-25T08:42:45,867 Building wheels for collected packages: pywfa 2023-05-25T08:42:45,877 Created temporary directory: /tmp/pip-wheel-3htto3s3 2023-05-25T08:42:45,878 Destination directory: /tmp/pip-wheel-3htto3s3 2023-05-25T08:42:45,883 Building wheel for pywfa (pyproject.toml): started 2023-05-25T08:42:45,885 Running command Building wheel for pywfa (pyproject.toml) 2023-05-25T08:42:47,643 cc -c /tmp/tmpiurqdspg.c -o tmp/tmpiurqdspg.o -Wno-unused-function 2023-05-25T08:42:47,793 cc -c /tmp/tmpq0v6la0a.c -o tmp/tmpq0v6la0a.o -Wno-unused-result 2023-05-25T08:42:47,941 cc -c /tmp/tmpotcxswrm.c -o tmp/tmpotcxswrm.o -Wno-ignored-qualifiers 2023-05-25T08:42:48,093 cc -c /tmp/tmp3hbqe4ce.c -o tmp/tmp3hbqe4ce.o -Wno-deprecated-declarations 2023-05-25T08:42:48,268 rm -rf bin build lib 2023-05-25T08:42:48,311 make 2023-05-25T08:42:48,331 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib' 2023-05-25T08:42:48,360 make --directory=alignment all 2023-05-25T08:42:48,392 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:42:48,392 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine_penalties.c -o ../build/affine_penalties.o 2023-05-25T08:42:48,840 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine2p_penalties.c -o ../build/affine2p_penalties.o 2023-05-25T08:42:49,288 cc -Wall -g -fPIC -O3 -march=native -I.. -c cigar.c -o ../build/cigar.o 2023-05-25T08:42:50,929 cc -Wall -g -fPIC -O3 -march=native -I.. -c score_matrix.c -o ../build/score_matrix.o 2023-05-25T08:42:51,626 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:42:51,627 make --directory=system all 2023-05-25T08:42:51,658 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:42:51,659 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_allocator.c -o ../build/mm_allocator.o 2023-05-25T08:42:53,162 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_stack.c -o ../build/mm_stack.o 2023-05-25T08:42:54,014 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_counter.c -o ../build/profiler_counter.o 2023-05-25T08:42:55,066 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_timer.c -o ../build/profiler_timer.o 2023-05-25T08:42:55,977 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:42:55,978 make --directory=utils all 2023-05-25T08:42:56,007 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:42:56,007 cc -Wall -g -fPIC -O3 -march=native -I.. -c bitmap.c -o ../build/bitmap.o 2023-05-25T08:42:56,648 cc -Wall -g -fPIC -O3 -march=native -I.. -c commons.c -o ../build/commons.o 2023-05-25T08:42:57,192 cc -Wall -g -fPIC -O3 -march=native -I.. -c dna_text.c -o ../build/dna_text.o 2023-05-25T08:42:57,653 cc -Wall -g -fPIC -O3 -march=native -I.. -c heatmap.c -o ../build/heatmap.o 2023-05-25T08:42:58,456 cc -Wall -g -fPIC -O3 -march=native -I.. -c sequence_buffer.c -o ../build/sequence_buffer.o 2023-05-25T08:42:59,092 cc -Wall -g -fPIC -O3 -march=native -I.. -c string_padded.c -o ../build/string_padded.o 2023-05-25T08:42:59,714 cc -Wall -g -fPIC -O3 -march=native -I.. -c vector.c -o ../build/vector.o 2023-05-25T08:43:00,389 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:43:00,389 make --directory=wavefront all 2023-05-25T08:43:00,421 make[2]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:43:00,421 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_align.c -o ../build/wavefront_align.o 2023-05-25T08:43:01,605 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_aligner.c -o ../build/wavefront_aligner.o 2023-05-25T08:43:02,045 wavefront_aligner.c: In function ‘wavefront_aligner_print_status’: 2023-05-25T08:43:02,046 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:43:02,046 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-05-25T08:43:02,047 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-25T08:43:02,048 wavefront_aligner.c:473:41: note: format string is defined here 2023-05-25T08:43:02,048 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-05-25T08:43:02,049 ~~^ 2023-05-25T08:43:02,049 %llu 2023-05-25T08:43:02,049 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:43:02,050 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-05-25T08:43:02,050 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-25T08:43:02,051 wavefront_aligner.c:473:48: note: format string is defined here 2023-05-25T08:43:02,051 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-05-25T08:43:02,051 ~~^ 2023-05-25T08:43:02,052 %llu 2023-05-25T08:43:02,793 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_attributes.c -o ../build/wavefront_attributes.o 2023-05-25T08:43:03,276 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_buffer.c -o ../build/wavefront_backtrace_buffer.o 2023-05-25T08:43:03,706 wavefront_backtrace_buffer.c: In function ‘wf_backtrace_buffer_compact_marked’: 2023-05-25T08:43:03,707 wavefront_backtrace_buffer.c:521:61: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-05-25T08:43:03,707 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-05-25T08:43:03,707 ~~^ 2023-05-25T08:43:03,708 %u 2023-05-25T08:43:03,708 wavefront_backtrace_buffer.c:521:71: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-05-25T08:43:03,709 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-05-25T08:43:03,709 ~~^ 2023-05-25T08:43:03,709 %u 2023-05-25T08:43:04,792 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_offload.c -o ../build/wavefront_backtrace_offload.o 2023-05-25T08:43:05,718 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace.c -o ../build/wavefront_backtrace.o 2023-05-25T08:43:07,445 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_bialign.c -o ../build/wavefront_bialign.o 2023-05-25T08:43:08,742 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_components.c -o ../build/wavefront_components.o 2023-05-25T08:43:09,924 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine.c -o ../build/wavefront_compute_affine.o 2023-05-25T08:43:10,828 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine2p.c -o ../build/wavefront_compute_affine2p.o 2023-05-25T08:43:12,037 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_edit.c -o ../build/wavefront_compute_edit.o 2023-05-25T08:43:13,158 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_linear.c -o ../build/wavefront_compute_linear.o 2023-05-25T08:43:13,921 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute.c -o ../build/wavefront_compute.o 2023-05-25T08:43:15,197 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_debug.c -o ../build/wavefront_debug.o 2023-05-25T08:43:15,630 wavefront_debug.c: In function ‘wavefront_report_lite’: 2023-05-25T08:43:15,631 wavefront_debug.c:138:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 2023-05-25T08:43:15,631 fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used)); 2023-05-25T08:43:15,631 ~~^ 2023-05-25T08:43:15,632 %llu 2023-05-25T08:43:15,633 wavefront_debug.c: In function ‘wavefront_report_verbose_begin’: 2023-05-25T08:43:15,633 wavefront_debug.c:187:52: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:43:15,634 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:43:15,634 ~~^ 2023-05-25T08:43:15,635 %llu 2023-05-25T08:43:15,635 wavefront_debug.c:187:58: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:43:15,635 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:43:15,636 ~~^ 2023-05-25T08:43:15,636 %llu 2023-05-25T08:43:15,637 wavefront_debug.c:187:64: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:43:15,638 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-05-25T08:43:15,638 ~~^ 2023-05-25T08:43:15,639 %llu 2023-05-25T08:43:15,639 wavefront_debug.c: In function ‘wavefront_report_verbose_end’: 2023-05-25T08:43:15,639 wavefront_debug.c:201:48: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-05-25T08:43:15,640 fprintf(stream,"[WFA::Debug]\tMemory.used\t%luMB\n", 2023-05-25T08:43:15,640 ~~^ 2023-05-25T08:43:15,640 %llu 2023-05-25T08:43:16,088 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_display.c -o ../build/wavefront_display.o 2023-05-25T08:43:17,215 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_extend.c -o ../build/wavefront_extend.o 2023-05-25T08:43:18,354 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_heuristic.c -o ../build/wavefront_heuristic.o 2023-05-25T08:43:19,712 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_pcigar.c -o ../build/wavefront_pcigar.o 2023-05-25T08:43:20,737 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_penalties.c -o ../build/wavefront_penalties.o 2023-05-25T08:43:21,426 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_plot.c -o ../build/wavefront_plot.o 2023-05-25T08:43:22,363 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_slab.c -o ../build/wavefront_slab.o 2023-05-25T08:43:23,270 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront.c -o ../build/wavefront.o 2023-05-25T08:43:24,024 make[2]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:43:24,025 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-05-25T08:43:24,199 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib' 2023-05-25T08:43:24,203 make: Warning: File 'build' has modification time 1.5 s in the future 2023-05-25T08:43:24,234 make --directory=alignment all 2023-05-25T08:43:24,266 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:43:24,267 make[1]: Nothing to be done for 'all'. 2023-05-25T08:43:24,267 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment' 2023-05-25T08:43:24,268 make --directory=system all 2023-05-25T08:43:24,298 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:43:24,299 make[1]: Nothing to be done for 'all'. 2023-05-25T08:43:24,299 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system' 2023-05-25T08:43:24,300 make --directory=utils all 2023-05-25T08:43:24,333 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:43:24,333 make[1]: Nothing to be done for 'all'. 2023-05-25T08:43:24,334 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils' 2023-05-25T08:43:24,334 make --directory=wavefront all 2023-05-25T08:43:24,371 make[1]: Entering directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:43:24,371 make[1]: Warning: File '../build/wavefront_slab.o' has modification time 0.62 s in the future 2023-05-25T08:43:24,372 make[1]: Nothing to be done for 'all'. 2023-05-25T08:43:24,372 make[1]: warning: Clock skew detected. Your build may be incomplete. 2023-05-25T08:43:24,372 make[1]: Leaving directory '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront' 2023-05-25T08:43:24,373 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-05-25T08:43:24,551 make: warning: Clock skew detected. Your build may be incomplete. 2023-05-25T08:43:25,828 Libs ['/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib'] 2023-05-25T08:43:25,829 Library dirs ['/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib'] 2023-05-25T08:43:25,829 Include dirs ['.', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/bindings/cpp', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment', '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa'] 2023-05-25T08:43:26,438 running bdist_wheel 2023-05-25T08:43:26,476 running build 2023-05-25T08:43:26,476 running build_py 2023-05-25T08:43:26,477 running build_ext 2023-05-25T08:43:26,482 building 'pywfa.align' extension 2023-05-25T08:43:26,483 creating build 2023-05-25T08:43:26,484 creating build/temp.linux-armv7l-cpython-37 2023-05-25T08:43:26,486 creating build/temp.linux-armv7l-cpython-37/pywfa 2023-05-25T08:43:26,488 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -I. -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/utils -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/wavefront -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/bindings/cpp -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/system -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/alignment -I/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa -I/usr/include/python3.7m -c pywfa/align.c -o build/temp.linux-armv7l-cpython-37/pywfa/align.o -Wno-unused-function -Wno-unused-result -Wno-ignored-qualifiers -Wno-deprecated-declarations 2023-05-25T08:44:00,641 creating build/lib 2023-05-25T08:44:00,642 creating build/lib/pywfa 2023-05-25T08:44:00,644 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-cpython-37/pywfa/align.o /tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib/libwfa.a -L/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib -L/usr/lib -o build/lib/pywfa/align.cpython-37m-arm-linux-gnueabihf.so 2023-05-25T08:44:25,971 copying _custom_build.py -> build/lib 2023-05-25T08:44:25,978 copying pywfa/__init__.py -> build/lib/pywfa 2023-05-25T08:44:25,985 creating build/lib/pywfa/tests 2023-05-25T08:44:25,987 copying pywfa/tests/__init__.py -> build/lib/pywfa/tests 2023-05-25T08:44:25,990 copying pywfa/tests/test.py -> build/lib/pywfa/tests 2023-05-25T08:44:25,997 running egg_info 2023-05-25T08:44:26,025 writing pywfa.egg-info/PKG-INFO 2023-05-25T08:44:26,030 writing dependency_links to pywfa.egg-info/dependency_links.txt 2023-05-25T08:44:26,034 writing top-level names to pywfa.egg-info/top_level.txt 2023-05-25T08:44:26,056 reading manifest file 'pywfa.egg-info/SOURCES.txt' 2023-05-25T08:44:26,112 reading manifest template 'MANIFEST.in' 2023-05-25T08:44:26,193 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-05-25T08:44:26,193 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-05-25T08:44:26,193 warning: no library file corresponding to '/tmp/pip-wheel-hzcpcfh1/pywfa_22063c1ea72a458aad4d8f3b12e8492a/pywfa/WFA2_lib/lib' found (skipping) 2023-05-25T08:44:26,194 warning: no files found matching 'WFA2_lib' under directory 'pywfa' 2023-05-25T08:44:26,222 adding license file 'LICENSE' 2023-05-25T08:44:26,250 writing manifest file 'pywfa.egg-info/SOURCES.txt' 2023-05-25T08:44:26,271 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.alignment' is absent from the `packages` configuration. 2023-05-25T08:44:26,271 !! 2023-05-25T08:44:26,272 ******************************************************************************** 2023-05-25T08:44:26,272 ############################ 2023-05-25T08:44:26,272 # Package would be ignored # 2023-05-25T08:44:26,273 ############################ 2023-05-25T08:44:26,273 Python recognizes 'pywfa.WFA2_lib.alignment' as an importable package[^1], 2023-05-25T08:44:26,273 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:26,274 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:26,274 package, please make sure that 'pywfa.WFA2_lib.alignment' is explicitly added 2023-05-25T08:44:26,274 to the `packages` configuration field. 2023-05-25T08:44:26,275 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:26,275 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:26,276 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:26,276 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:26,277 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:26,277 If you don't want 'pywfa.WFA2_lib.alignment' to be distributed and are 2023-05-25T08:44:26,277 already explicitly excluding 'pywfa.WFA2_lib.alignment' via 2023-05-25T08:44:26,278 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:26,278 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:26,278 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:26,279 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:26,279 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:26,280 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:26,281 even if it does not contain any `.py` files. 2023-05-25T08:44:26,281 On the other hand, currently there is no concept of package data 2023-05-25T08:44:26,281 directory, all directories are treated like packages. 2023-05-25T08:44:26,282 ******************************************************************************** 2023-05-25T08:44:26,282 !! 2023-05-25T08:44:26,283 check.warn(importable) 2023-05-25T08:44:26,283 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.build' is absent from the `packages` configuration. 2023-05-25T08:44:26,283 !! 2023-05-25T08:44:26,284 ******************************************************************************** 2023-05-25T08:44:26,284 ############################ 2023-05-25T08:44:26,284 # Package would be ignored # 2023-05-25T08:44:26,285 ############################ 2023-05-25T08:44:26,285 Python recognizes 'pywfa.WFA2_lib.build' as an importable package[^1], 2023-05-25T08:44:26,285 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:26,286 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:26,286 package, please make sure that 'pywfa.WFA2_lib.build' is explicitly added 2023-05-25T08:44:26,286 to the `packages` configuration field. 2023-05-25T08:44:26,287 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:26,287 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:26,288 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:26,288 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:26,289 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:26,289 If you don't want 'pywfa.WFA2_lib.build' to be distributed and are 2023-05-25T08:44:26,290 already explicitly excluding 'pywfa.WFA2_lib.build' via 2023-05-25T08:44:26,290 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:26,290 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:26,291 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:26,291 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:26,292 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:26,293 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:26,293 even if it does not contain any `.py` files. 2023-05-25T08:44:26,293 On the other hand, currently there is no concept of package data 2023-05-25T08:44:26,294 directory, all directories are treated like packages. 2023-05-25T08:44:26,294 ******************************************************************************** 2023-05-25T08:44:26,295 !! 2023-05-25T08:44:26,295 check.warn(importable) 2023-05-25T08:44:26,295 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.examples' is absent from the `packages` configuration. 2023-05-25T08:44:26,295 !! 2023-05-25T08:44:26,296 ******************************************************************************** 2023-05-25T08:44:26,296 ############################ 2023-05-25T08:44:26,297 # Package would be ignored # 2023-05-25T08:44:26,297 ############################ 2023-05-25T08:44:26,297 Python recognizes 'pywfa.WFA2_lib.examples' as an importable package[^1], 2023-05-25T08:44:26,297 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:26,298 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:26,298 package, please make sure that 'pywfa.WFA2_lib.examples' is explicitly added 2023-05-25T08:44:26,299 to the `packages` configuration field. 2023-05-25T08:44:26,299 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:26,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:26,300 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:26,300 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:26,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:26,302 If you don't want 'pywfa.WFA2_lib.examples' to be distributed and are 2023-05-25T08:44:26,302 already explicitly excluding 'pywfa.WFA2_lib.examples' via 2023-05-25T08:44:26,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:26,303 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:26,303 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:26,303 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:26,304 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:26,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:26,305 even if it does not contain any `.py` files. 2023-05-25T08:44:26,305 On the other hand, currently there is no concept of package data 2023-05-25T08:44:26,306 directory, all directories are treated like packages. 2023-05-25T08:44:26,306 ******************************************************************************** 2023-05-25T08:44:26,307 !! 2023-05-25T08:44:26,307 check.warn(importable) 2023-05-25T08:44:26,307 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.img' is absent from the `packages` configuration. 2023-05-25T08:44:26,307 !! 2023-05-25T08:44:26,308 ******************************************************************************** 2023-05-25T08:44:26,308 ############################ 2023-05-25T08:44:26,309 # Package would be ignored # 2023-05-25T08:44:26,309 ############################ 2023-05-25T08:44:26,309 Python recognizes 'pywfa.WFA2_lib.img' as an importable package[^1], 2023-05-25T08:44:26,309 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:26,310 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:26,310 package, please make sure that 'pywfa.WFA2_lib.img' is explicitly added 2023-05-25T08:44:26,311 to the `packages` configuration field. 2023-05-25T08:44:26,311 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:26,312 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:26,312 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:26,313 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:26,313 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:26,314 If you don't want 'pywfa.WFA2_lib.img' to be distributed and are 2023-05-25T08:44:26,314 already explicitly excluding 'pywfa.WFA2_lib.img' via 2023-05-25T08:44:26,314 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:26,315 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:26,315 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:26,315 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:26,316 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:26,317 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:26,317 even if it does not contain any `.py` files. 2023-05-25T08:44:26,317 On the other hand, currently there is no concept of package data 2023-05-25T08:44:26,318 directory, all directories are treated like packages. 2023-05-25T08:44:26,318 ******************************************************************************** 2023-05-25T08:44:26,319 !! 2023-05-25T08:44:26,319 check.warn(importable) 2023-05-25T08:44:26,319 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.lib' is absent from the `packages` configuration. 2023-05-25T08:44:26,320 !! 2023-05-25T08:44:26,320 ******************************************************************************** 2023-05-25T08:44:26,321 ############################ 2023-05-25T08:44:26,321 # Package would be ignored # 2023-05-25T08:44:26,321 ############################ 2023-05-25T08:44:26,321 Python recognizes 'pywfa.WFA2_lib.lib' as an importable package[^1], 2023-05-25T08:44:26,322 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:26,322 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:26,323 package, please make sure that 'pywfa.WFA2_lib.lib' is explicitly added 2023-05-25T08:44:26,323 to the `packages` configuration field. 2023-05-25T08:44:26,323 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:26,324 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:26,324 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:26,325 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:26,325 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:26,326 If you don't want 'pywfa.WFA2_lib.lib' to be distributed and are 2023-05-25T08:44:26,326 already explicitly excluding 'pywfa.WFA2_lib.lib' via 2023-05-25T08:44:26,326 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:26,327 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:26,327 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:26,327 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:26,328 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:26,329 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:26,329 even if it does not contain any `.py` files. 2023-05-25T08:44:26,329 On the other hand, currently there is no concept of package data 2023-05-25T08:44:26,330 directory, all directories are treated like packages. 2023-05-25T08:44:26,330 ******************************************************************************** 2023-05-25T08:44:26,331 !! 2023-05-25T08:44:26,331 check.warn(importable) 2023-05-25T08:44:26,332 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.scripts' is absent from the `packages` configuration. 2023-05-25T08:44:26,332 !! 2023-05-25T08:44:26,334 ******************************************************************************** 2023-05-25T08:44:26,334 ############################ 2023-05-25T08:44:26,335 # Package would be ignored # 2023-05-25T08:44:26,335 ############################ 2023-05-25T08:44:26,336 Python recognizes 'pywfa.WFA2_lib.scripts' as an importable package[^1], 2023-05-25T08:44:26,336 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:26,337 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:26,337 package, please make sure that 'pywfa.WFA2_lib.scripts' is explicitly added 2023-05-25T08:44:26,338 to the `packages` configuration field. 2023-05-25T08:44:26,338 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:26,339 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:26,339 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:26,342 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:26,345 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:26,346 If you don't want 'pywfa.WFA2_lib.scripts' to be distributed and are 2023-05-25T08:44:26,346 already explicitly excluding 'pywfa.WFA2_lib.scripts' via 2023-05-25T08:44:26,346 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:26,347 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:26,347 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:26,348 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:26,349 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:26,351 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:26,352 even if it does not contain any `.py` files. 2023-05-25T08:44:26,352 On the other hand, currently there is no concept of package data 2023-05-25T08:44:26,352 directory, all directories are treated like packages. 2023-05-25T08:44:26,353 ******************************************************************************** 2023-05-25T08:44:26,354 !! 2023-05-25T08:44:26,354 check.warn(importable) 2023-05-25T08:44:26,354 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.system' is absent from the `packages` configuration. 2023-05-25T08:44:26,355 !! 2023-05-25T08:44:26,355 ******************************************************************************** 2023-05-25T08:44:26,356 ############################ 2023-05-25T08:44:26,356 # Package would be ignored # 2023-05-25T08:44:26,356 ############################ 2023-05-25T08:44:26,357 Python recognizes 'pywfa.WFA2_lib.system' as an importable package[^1], 2023-05-25T08:44:26,357 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:26,357 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:26,358 package, please make sure that 'pywfa.WFA2_lib.system' is explicitly added 2023-05-25T08:44:26,358 to the `packages` configuration field. 2023-05-25T08:44:26,359 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:26,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:26,359 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:26,360 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:26,361 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:26,361 If you don't want 'pywfa.WFA2_lib.system' to be distributed and are 2023-05-25T08:44:26,361 already explicitly excluding 'pywfa.WFA2_lib.system' via 2023-05-25T08:44:26,362 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:26,362 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:26,368 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:26,371 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:26,373 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:26,376 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:26,377 even if it does not contain any `.py` files. 2023-05-25T08:44:26,378 On the other hand, currently there is no concept of package data 2023-05-25T08:44:26,378 directory, all directories are treated like packages. 2023-05-25T08:44:26,379 ******************************************************************************** 2023-05-25T08:44:26,381 !! 2023-05-25T08:44:26,382 check.warn(importable) 2023-05-25T08:44:26,383 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.tools' is absent from the `packages` configuration. 2023-05-25T08:44:26,387 !! 2023-05-25T08:44:26,388 ******************************************************************************** 2023-05-25T08:44:26,388 ############################ 2023-05-25T08:44:26,388 # Package would be ignored # 2023-05-25T08:44:26,389 ############################ 2023-05-25T08:44:26,389 Python recognizes 'pywfa.WFA2_lib.tools' as an importable package[^1], 2023-05-25T08:44:26,390 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:26,391 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:26,391 package, please make sure that 'pywfa.WFA2_lib.tools' is explicitly added 2023-05-25T08:44:26,391 to the `packages` configuration field. 2023-05-25T08:44:26,392 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:26,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:26,393 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:26,394 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:26,394 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:26,395 If you don't want 'pywfa.WFA2_lib.tools' to be distributed and are 2023-05-25T08:44:26,395 already explicitly excluding 'pywfa.WFA2_lib.tools' via 2023-05-25T08:44:26,395 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:26,396 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:26,396 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:26,396 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:26,397 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:26,398 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:26,398 even if it does not contain any `.py` files. 2023-05-25T08:44:26,399 On the other hand, currently there is no concept of package data 2023-05-25T08:44:26,399 directory, all directories are treated like packages. 2023-05-25T08:44:26,399 ******************************************************************************** 2023-05-25T08:44:26,402 !! 2023-05-25T08:44:26,403 check.warn(importable) 2023-05-25T08:44:26,404 copying pywfa/.DS_Store -> build/lib/pywfa 2023-05-25T08:44:26,405 copying pywfa/WFA_wrap.c -> build/lib/pywfa 2023-05-25T08:44:26,405 copying pywfa/WFA_wrap.pxd -> build/lib/pywfa 2023-05-25T08:44:26,406 copying pywfa/align.c -> build/lib/pywfa 2023-05-25T08:44:26,407 copying pywfa/align.cpython-310-darwin.so -> build/lib/pywfa 2023-05-25T08:44:26,436 copying pywfa/align.cpython-39-darwin.so -> build/lib/pywfa 2023-05-25T08:44:26,481 copying pywfa/align.pxd -> build/lib/pywfa 2023-05-25T08:44:26,484 copying pywfa/align.pyx -> build/lib/pywfa 2023-05-25T08:44:26,495 copying pywfa/tests/long.fa -> build/lib/pywfa/tests 2023-05-25T08:44:26,500 copying pywfa/tests/long.reference.fa -> build/lib/pywfa/tests 2023-05-25T08:44:26,504 copying pywfa/tests/short.fa -> build/lib/pywfa/tests 2023-05-25T08:44:26,509 copying pywfa/tests/short.reference.fa -> build/lib/pywfa/tests 2023-05-25T08:44:26,514 creating build/lib/pywfa/WFA2_lib 2023-05-25T08:44:26,516 copying pywfa/WFA2_lib/.DS_Store -> build/lib/pywfa/WFA2_lib 2023-05-25T08:44:26,522 copying pywfa/WFA2_lib/.gitignore -> build/lib/pywfa/WFA2_lib 2023-05-25T08:44:26,526 copying pywfa/WFA2_lib/LICENSE -> build/lib/pywfa/WFA2_lib 2023-05-25T08:44:26,531 copying pywfa/WFA2_lib/Makefile -> build/lib/pywfa/WFA2_lib 2023-05-25T08:44:26,535 copying pywfa/WFA2_lib/README.md -> build/lib/pywfa/WFA2_lib 2023-05-25T08:44:26,542 copying pywfa/WFA2_lib/VERSION -> build/lib/pywfa/WFA2_lib 2023-05-25T08:44:26,547 creating build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,549 copying pywfa/WFA2_lib/alignment/Makefile -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,554 copying pywfa/WFA2_lib/alignment/affine2p_penalties.c -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,558 copying pywfa/WFA2_lib/alignment/affine2p_penalties.h -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,563 copying pywfa/WFA2_lib/alignment/affine_penalties.c -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,567 copying pywfa/WFA2_lib/alignment/affine_penalties.h -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,571 copying pywfa/WFA2_lib/alignment/cigar.c -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,577 copying pywfa/WFA2_lib/alignment/cigar.h -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,582 copying pywfa/WFA2_lib/alignment/linear_penalties.h -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,587 copying pywfa/WFA2_lib/alignment/score_matrix.c -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,591 copying pywfa/WFA2_lib/alignment/score_matrix.h -> build/lib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:26,596 creating build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,598 copying pywfa/WFA2_lib/build/affine2p_penalties.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,603 copying pywfa/WFA2_lib/build/affine_penalties.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,608 copying pywfa/WFA2_lib/build/bitmap.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,612 copying pywfa/WFA2_lib/build/cigar.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,618 copying pywfa/WFA2_lib/build/commons.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,623 copying pywfa/WFA2_lib/build/dna_text.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,627 copying pywfa/WFA2_lib/build/heatmap.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,632 copying pywfa/WFA2_lib/build/mm_allocator.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,638 copying pywfa/WFA2_lib/build/mm_stack.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,643 copying pywfa/WFA2_lib/build/profiler_counter.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,648 copying pywfa/WFA2_lib/build/profiler_timer.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,653 copying pywfa/WFA2_lib/build/score_matrix.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,658 copying pywfa/WFA2_lib/build/sequence_buffer.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,663 copying pywfa/WFA2_lib/build/string_padded.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,668 copying pywfa/WFA2_lib/build/vector.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,673 copying pywfa/WFA2_lib/build/wavefront.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,678 copying pywfa/WFA2_lib/build/wavefront_align.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,684 copying pywfa/WFA2_lib/build/wavefront_aligner.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,690 copying pywfa/WFA2_lib/build/wavefront_attributes.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,695 copying pywfa/WFA2_lib/build/wavefront_backtrace.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,702 copying pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,708 copying pywfa/WFA2_lib/build/wavefront_backtrace_offload.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,714 copying pywfa/WFA2_lib/build/wavefront_bialign.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,721 copying pywfa/WFA2_lib/build/wavefront_components.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,727 copying pywfa/WFA2_lib/build/wavefront_compute.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,733 copying pywfa/WFA2_lib/build/wavefront_compute_affine.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,739 copying pywfa/WFA2_lib/build/wavefront_compute_affine2p.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,746 copying pywfa/WFA2_lib/build/wavefront_compute_edit.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,752 copying pywfa/WFA2_lib/build/wavefront_compute_linear.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,757 copying pywfa/WFA2_lib/build/wavefront_debug.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,764 copying pywfa/WFA2_lib/build/wavefront_display.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,770 copying pywfa/WFA2_lib/build/wavefront_extend.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,776 copying pywfa/WFA2_lib/build/wavefront_heuristic.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,783 copying pywfa/WFA2_lib/build/wavefront_pcigar.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,789 copying pywfa/WFA2_lib/build/wavefront_penalties.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,794 copying pywfa/WFA2_lib/build/wavefront_plot.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,799 copying pywfa/WFA2_lib/build/wavefront_slab.o -> build/lib/pywfa/WFA2_lib/build 2023-05-25T08:44:26,805 creating build/lib/pywfa/WFA2_lib/examples 2023-05-25T08:44:26,806 copying pywfa/WFA2_lib/examples/Makefile -> build/lib/pywfa/WFA2_lib/examples 2023-05-25T08:44:26,810 copying pywfa/WFA2_lib/examples/README.md -> build/lib/pywfa/WFA2_lib/examples 2023-05-25T08:44:26,814 copying pywfa/WFA2_lib/examples/wfa_adapt.c -> build/lib/pywfa/WFA2_lib/examples 2023-05-25T08:44:26,818 copying pywfa/WFA2_lib/examples/wfa_basic.c -> build/lib/pywfa/WFA2_lib/examples 2023-05-25T08:44:26,823 copying pywfa/WFA2_lib/examples/wfa_bindings.cpp -> build/lib/pywfa/WFA2_lib/examples 2023-05-25T08:44:26,827 copying pywfa/WFA2_lib/examples/wfa_lambda.cpp -> build/lib/pywfa/WFA2_lib/examples 2023-05-25T08:44:26,831 copying pywfa/WFA2_lib/examples/wfa_repeated.c -> build/lib/pywfa/WFA2_lib/examples 2023-05-25T08:44:26,835 creating build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:26,836 copying pywfa/WFA2_lib/img/heuristics.aband.10.10.png -> build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:26,858 copying pywfa/WFA2_lib/img/heuristics.aband.50.50.png -> build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:26,889 copying pywfa/WFA2_lib/img/heuristics.band.10.10.png -> build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:26,913 copying pywfa/WFA2_lib/img/heuristics.band.10.150.png -> build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:26,941 copying pywfa/WFA2_lib/img/heuristics.none.png -> build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:26,977 copying pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png -> build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,002 copying pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png -> build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,034 copying pywfa/WFA2_lib/img/wfa.vs.swg.png -> build/lib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,117 creating build/lib/pywfa/WFA2_lib/lib 2023-05-25T08:44:27,119 copying pywfa/WFA2_lib/lib/libwfa.a -> build/lib/pywfa/WFA2_lib/lib 2023-05-25T08:44:27,169 creating build/lib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,171 copying pywfa/WFA2_lib/scripts/fasta2seq.sh -> build/lib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,175 copying pywfa/WFA2_lib/scripts/seq2fasta.sh -> build/lib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,179 copying pywfa/WFA2_lib/scripts/wfa.alg.cmp.py -> build/lib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,184 copying pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh -> build/lib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,188 copying pywfa/WFA2_lib/scripts/wfa.alg.rescore.py -> build/lib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,192 copying pywfa/WFA2_lib/scripts/wfa2png.py -> build/lib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,197 creating build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,199 copying pywfa/WFA2_lib/system/Makefile -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,203 copying pywfa/WFA2_lib/system/mm_allocator.c -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,208 copying pywfa/WFA2_lib/system/mm_allocator.h -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,213 copying pywfa/WFA2_lib/system/mm_stack.c -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,217 copying pywfa/WFA2_lib/system/mm_stack.h -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,221 copying pywfa/WFA2_lib/system/profiler_counter.c -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,225 copying pywfa/WFA2_lib/system/profiler_counter.h -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,230 copying pywfa/WFA2_lib/system/profiler_timer.c -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,234 copying pywfa/WFA2_lib/system/profiler_timer.h -> build/lib/pywfa/WFA2_lib/system 2023-05-25T08:44:27,238 creating build/lib/pywfa/WFA2_lib/tools 2023-05-25T08:44:27,241 copying pywfa/WFA2_lib/tools/.DS_Store -> build/lib/pywfa/WFA2_lib/tools 2023-05-25T08:44:27,246 copying pywfa/WFA2_lib/tools/README.md -> build/lib/pywfa/WFA2_lib/tools 2023-05-25T08:44:27,251 creating build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,253 copying pywfa/WFA2_lib/utils/Makefile -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,258 copying pywfa/WFA2_lib/utils/bitmap.c -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,263 copying pywfa/WFA2_lib/utils/bitmap.h -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,267 copying pywfa/WFA2_lib/utils/commons.c -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,272 copying pywfa/WFA2_lib/utils/commons.h -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,277 copying pywfa/WFA2_lib/utils/dna_text.c -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,281 copying pywfa/WFA2_lib/utils/dna_text.h -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,286 copying pywfa/WFA2_lib/utils/heatmap.c -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,291 copying pywfa/WFA2_lib/utils/heatmap.h -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,295 copying pywfa/WFA2_lib/utils/sequence_buffer.c -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,300 copying pywfa/WFA2_lib/utils/sequence_buffer.h -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,304 copying pywfa/WFA2_lib/utils/string_padded.c -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,309 copying pywfa/WFA2_lib/utils/string_padded.h -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,313 copying pywfa/WFA2_lib/utils/vector.c -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,317 copying pywfa/WFA2_lib/utils/vector.h -> build/lib/pywfa/WFA2_lib/utils 2023-05-25T08:44:27,322 creating build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,323 copying pywfa/WFA2_lib/wavefront/Makefile -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,327 copying pywfa/WFA2_lib/wavefront/wavefront.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,331 copying pywfa/WFA2_lib/wavefront/wavefront.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,336 copying pywfa/WFA2_lib/wavefront/wavefront_align.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,341 copying pywfa/WFA2_lib/wavefront/wavefront_align.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,344 copying pywfa/WFA2_lib/wavefront/wavefront_aligner.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,349 copying pywfa/WFA2_lib/wavefront/wavefront_aligner.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,354 copying pywfa/WFA2_lib/wavefront/wavefront_attributes.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,358 copying pywfa/WFA2_lib/wavefront/wavefront_attributes.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,362 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,367 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,371 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,376 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,381 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,386 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,389 copying pywfa/WFA2_lib/wavefront/wavefront_bialign.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,395 copying pywfa/WFA2_lib/wavefront/wavefront_bialign.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,398 copying pywfa/WFA2_lib/wavefront/wavefront_components.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,403 copying pywfa/WFA2_lib/wavefront/wavefront_components.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,408 copying pywfa/WFA2_lib/wavefront/wavefront_compute.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,413 copying pywfa/WFA2_lib/wavefront/wavefront_compute.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,416 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,421 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,425 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,429 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,433 copying pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,438 copying pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,442 copying pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,446 copying pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,450 copying pywfa/WFA2_lib/wavefront/wavefront_debug.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,455 copying pywfa/WFA2_lib/wavefront/wavefront_debug.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,458 copying pywfa/WFA2_lib/wavefront/wavefront_display.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,463 copying pywfa/WFA2_lib/wavefront/wavefront_display.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,466 copying pywfa/WFA2_lib/wavefront/wavefront_extend.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,472 copying pywfa/WFA2_lib/wavefront/wavefront_extend.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,475 copying pywfa/WFA2_lib/wavefront/wavefront_heuristic.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,485 copying pywfa/WFA2_lib/wavefront/wavefront_heuristic.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,492 copying pywfa/WFA2_lib/wavefront/wavefront_offset.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,496 copying pywfa/WFA2_lib/wavefront/wavefront_pcigar.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,501 copying pywfa/WFA2_lib/wavefront/wavefront_pcigar.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,505 copying pywfa/WFA2_lib/wavefront/wavefront_penalties.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,509 copying pywfa/WFA2_lib/wavefront/wavefront_penalties.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,513 copying pywfa/WFA2_lib/wavefront/wavefront_plot.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,517 copying pywfa/WFA2_lib/wavefront/wavefront_plot.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,521 copying pywfa/WFA2_lib/wavefront/wavefront_slab.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,527 copying pywfa/WFA2_lib/wavefront/wavefront_slab.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:27,556 installing to build/bdist.linux-armv7l/wheel 2023-05-25T08:44:27,556 running install 2023-05-25T08:44:27,619 running install_lib 2023-05-25T08:44:27,630 creating build/bdist.linux-armv7l 2023-05-25T08:44:27,631 creating build/bdist.linux-armv7l/wheel 2023-05-25T08:44:27,633 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data 2023-05-25T08:44:27,634 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib 2023-05-25T08:44:27,637 copying build/lib/_custom_build.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib 2023-05-25T08:44:27,643 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:27,649 copying build/lib/pywfa/WFA_wrap.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:27,669 copying build/lib/pywfa/align.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:27,706 copying build/lib/pywfa/__init__.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:27,711 copying build/lib/pywfa/align.pyx -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:27,718 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib 2023-05-25T08:44:27,721 copying build/lib/pywfa/WFA2_lib/README.md -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib 2023-05-25T08:44:27,728 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,731 copying build/lib/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,762 copying build/lib/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,788 copying build/lib/pywfa/WFA2_lib/img/wfa.vs.swg.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,838 copying build/lib/pywfa/WFA2_lib/img/heuristics.aband.50.50.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,864 copying build/lib/pywfa/WFA2_lib/img/heuristics.none.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,894 copying build/lib/pywfa/WFA2_lib/img/heuristics.band.10.150.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,921 copying build/lib/pywfa/WFA2_lib/img/heuristics.band.10.10.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,944 copying build/lib/pywfa/WFA2_lib/img/heuristics.aband.10.10.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img 2023-05-25T08:44:27,969 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,972 copying build/lib/pywfa/WFA2_lib/scripts/wfa.alg.rescore.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,977 copying build/lib/pywfa/WFA2_lib/scripts/wfa2png.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,983 copying build/lib/pywfa/WFA2_lib/scripts/wfa.alg.cmp.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,988 copying build/lib/pywfa/WFA2_lib/scripts/seq2fasta.sh -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,992 copying build/lib/pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:27,995 copying build/lib/pywfa/WFA2_lib/scripts/fasta2seq.sh -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts 2023-05-25T08:44:28,000 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,002 copying build/lib/pywfa/WFA2_lib/alignment/score_matrix.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,006 copying build/lib/pywfa/WFA2_lib/alignment/affine2p_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,009 copying build/lib/pywfa/WFA2_lib/alignment/score_matrix.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,013 copying build/lib/pywfa/WFA2_lib/alignment/cigar.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,017 copying build/lib/pywfa/WFA2_lib/alignment/cigar.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,023 copying build/lib/pywfa/WFA2_lib/alignment/affine_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,026 copying build/lib/pywfa/WFA2_lib/alignment/affine_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,031 copying build/lib/pywfa/WFA2_lib/alignment/affine2p_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,034 copying build/lib/pywfa/WFA2_lib/alignment/linear_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,038 copying build/lib/pywfa/WFA2_lib/alignment/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment 2023-05-25T08:44:28,044 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,046 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,051 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,054 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_extend.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,058 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,062 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_align.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,067 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_display.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,071 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,076 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,080 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_bialign.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,085 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_extend.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,090 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_components.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,096 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,100 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_aligner.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,105 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,110 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_heuristic.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,114 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_debug.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,118 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,122 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_plot.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,127 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_offset.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,130 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,135 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_slab.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,139 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,143 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,147 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_bialign.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,153 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_pcigar.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,157 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,161 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_plot.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,164 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_pcigar.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,169 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_slab.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,173 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_debug.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,177 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_aligner.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,182 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,186 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,191 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,196 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,200 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,204 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_attributes.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,209 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_heuristic.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,214 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_components.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,218 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,224 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,229 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_attributes.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,233 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_display.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,237 copying build/lib/pywfa/WFA2_lib/wavefront/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,241 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_align.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,245 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront 2023-05-25T08:44:28,252 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,254 copying build/lib/pywfa/WFA2_lib/utils/commons.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,259 copying build/lib/pywfa/WFA2_lib/utils/bitmap.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,263 copying build/lib/pywfa/WFA2_lib/utils/commons.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,266 copying build/lib/pywfa/WFA2_lib/utils/dna_text.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,270 copying build/lib/pywfa/WFA2_lib/utils/sequence_buffer.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,274 copying build/lib/pywfa/WFA2_lib/utils/string_padded.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,279 copying build/lib/pywfa/WFA2_lib/utils/heatmap.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,284 copying build/lib/pywfa/WFA2_lib/utils/sequence_buffer.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,289 copying build/lib/pywfa/WFA2_lib/utils/dna_text.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,293 copying build/lib/pywfa/WFA2_lib/utils/heatmap.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,297 copying build/lib/pywfa/WFA2_lib/utils/string_padded.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,301 copying build/lib/pywfa/WFA2_lib/utils/bitmap.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,305 copying build/lib/pywfa/WFA2_lib/utils/vector.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,310 copying build/lib/pywfa/WFA2_lib/utils/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,313 copying build/lib/pywfa/WFA2_lib/utils/vector.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils 2023-05-25T08:44:28,319 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/lib 2023-05-25T08:44:28,321 copying build/lib/pywfa/WFA2_lib/lib/libwfa.a -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/lib 2023-05-25T08:44:28,374 copying build/lib/pywfa/WFA2_lib/.gitignore -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib 2023-05-25T08:44:28,378 copying build/lib/pywfa/WFA2_lib/LICENSE -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib 2023-05-25T08:44:28,384 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,386 copying build/lib/pywfa/WFA2_lib/build/wavefront_bialign.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,393 copying build/lib/pywfa/WFA2_lib/build/vector.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,398 copying build/lib/pywfa/WFA2_lib/build/commons.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,403 copying build/lib/pywfa/WFA2_lib/build/score_matrix.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,407 copying build/lib/pywfa/WFA2_lib/build/wavefront_display.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,414 copying build/lib/pywfa/WFA2_lib/build/wavefront_backtrace_offload.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,421 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute_affine.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,427 copying build/lib/pywfa/WFA2_lib/build/mm_allocator.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,434 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute_edit.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,442 copying build/lib/pywfa/WFA2_lib/build/affine_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,446 copying build/lib/pywfa/WFA2_lib/build/wavefront_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,451 copying build/lib/pywfa/WFA2_lib/build/wavefront_plot.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,457 copying build/lib/pywfa/WFA2_lib/build/dna_text.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,461 copying build/lib/pywfa/WFA2_lib/build/affine2p_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,466 copying build/lib/pywfa/WFA2_lib/build/wavefront_aligner.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,473 copying build/lib/pywfa/WFA2_lib/build/bitmap.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,478 copying build/lib/pywfa/WFA2_lib/build/wavefront_debug.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,484 copying build/lib/pywfa/WFA2_lib/build/profiler_counter.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,490 copying build/lib/pywfa/WFA2_lib/build/string_padded.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,494 copying build/lib/pywfa/WFA2_lib/build/wavefront_slab.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,500 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute_linear.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,506 copying build/lib/pywfa/WFA2_lib/build/wavefront_heuristic.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,514 copying build/lib/pywfa/WFA2_lib/build/sequence_buffer.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,519 copying build/lib/pywfa/WFA2_lib/build/wavefront_backtrace.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,526 copying build/lib/pywfa/WFA2_lib/build/profiler_timer.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,532 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,538 copying build/lib/pywfa/WFA2_lib/build/wavefront_attributes.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,543 copying build/lib/pywfa/WFA2_lib/build/wavefront_pcigar.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,549 copying build/lib/pywfa/WFA2_lib/build/wavefront_extend.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,556 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute_affine2p.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,563 copying build/lib/pywfa/WFA2_lib/build/heatmap.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,568 copying build/lib/pywfa/WFA2_lib/build/mm_stack.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,574 copying build/lib/pywfa/WFA2_lib/build/wavefront.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,579 copying build/lib/pywfa/WFA2_lib/build/wavefront_components.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,586 copying build/lib/pywfa/WFA2_lib/build/cigar.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,593 copying build/lib/pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,599 copying build/lib/pywfa/WFA2_lib/build/wavefront_align.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build 2023-05-25T08:44:28,607 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,609 copying build/lib/pywfa/WFA2_lib/system/profiler_counter.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,614 copying build/lib/pywfa/WFA2_lib/system/profiler_timer.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,619 copying build/lib/pywfa/WFA2_lib/system/profiler_counter.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,624 copying build/lib/pywfa/WFA2_lib/system/mm_stack.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,628 copying build/lib/pywfa/WFA2_lib/system/mm_stack.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,633 copying build/lib/pywfa/WFA2_lib/system/mm_allocator.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,639 copying build/lib/pywfa/WFA2_lib/system/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,643 copying build/lib/pywfa/WFA2_lib/system/mm_allocator.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,648 copying build/lib/pywfa/WFA2_lib/system/profiler_timer.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system 2023-05-25T08:44:28,654 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples 2023-05-25T08:44:28,656 copying build/lib/pywfa/WFA2_lib/examples/README.md -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples 2023-05-25T08:44:28,660 copying build/lib/pywfa/WFA2_lib/examples/wfa_adapt.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples 2023-05-25T08:44:28,664 copying build/lib/pywfa/WFA2_lib/examples/wfa_basic.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples 2023-05-25T08:44:28,668 copying build/lib/pywfa/WFA2_lib/examples/wfa_lambda.cpp -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples 2023-05-25T08:44:28,671 copying build/lib/pywfa/WFA2_lib/examples/wfa_repeated.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples 2023-05-25T08:44:28,675 copying build/lib/pywfa/WFA2_lib/examples/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples 2023-05-25T08:44:28,679 copying build/lib/pywfa/WFA2_lib/examples/wfa_bindings.cpp -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples 2023-05-25T08:44:28,682 copying build/lib/pywfa/WFA2_lib/.DS_Store -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib 2023-05-25T08:44:28,687 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/tools 2023-05-25T08:44:28,689 copying build/lib/pywfa/WFA2_lib/tools/README.md -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/tools 2023-05-25T08:44:28,694 copying build/lib/pywfa/WFA2_lib/tools/.DS_Store -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/tools 2023-05-25T08:44:28,698 copying build/lib/pywfa/WFA2_lib/VERSION -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib 2023-05-25T08:44:28,702 copying build/lib/pywfa/WFA2_lib/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/WFA2_lib 2023-05-25T08:44:28,705 copying build/lib/pywfa/align.pxd -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:28,709 copying build/lib/pywfa/align.cpython-310-darwin.so -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:28,742 copying build/lib/pywfa/WFA_wrap.pxd -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:28,748 copying build/lib/pywfa/align.cpython-39-darwin.so -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:28,769 copying build/lib/pywfa/.DS_Store -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:28,774 copying build/lib/pywfa/align.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa 2023-05-25T08:44:28,821 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/tests 2023-05-25T08:44:28,823 copying build/lib/pywfa/tests/long.fa -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/tests 2023-05-25T08:44:28,827 copying build/lib/pywfa/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/tests 2023-05-25T08:44:28,831 copying build/lib/pywfa/tests/test.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/tests 2023-05-25T08:44:28,837 copying build/lib/pywfa/tests/long.reference.fa -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/tests 2023-05-25T08:44:28,841 copying build/lib/pywfa/tests/short.reference.fa -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/tests 2023-05-25T08:44:28,845 copying build/lib/pywfa/tests/short.fa -> build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa/tests 2023-05-25T08:44:28,848 running install_egg_info 2023-05-25T08:44:28,859 Copying pywfa.egg-info to build/bdist.linux-armv7l/wheel/pywfa-0.5.0.data/platlib/pywfa-0.5.0-py3.7.egg-info 2023-05-25T08:44:28,876 running install_scripts 2023-05-25T08:44:28,905 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.0.dist-info/WHEEL 2023-05-25T08:44:28,911 creating '/tmp/pip-wheel-3htto3s3/.tmp-0jlrcexi/pywfa-0.5.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-25T08:44:28,917 adding 'pywfa-0.5.0.data/platlib/_custom_build.py' 2023-05-25T08:44:28,922 adding 'pywfa-0.5.0.data/platlib/pywfa/.DS_Store' 2023-05-25T08:44:28,949 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA_wrap.c' 2023-05-25T08:44:28,957 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA_wrap.pxd' 2023-05-25T08:44:28,960 adding 'pywfa-0.5.0.data/platlib/pywfa/__init__.py' 2023-05-25T08:44:29,084 adding 'pywfa-0.5.0.data/platlib/pywfa/align.c' 2023-05-25T08:44:29,319 adding 'pywfa-0.5.0.data/platlib/pywfa/align.cpython-310-darwin.so' 2023-05-25T08:44:29,737 adding 'pywfa-0.5.0.data/platlib/pywfa/align.cpython-37m-arm-linux-gnueabihf.so' 2023-05-25T08:44:29,894 adding 'pywfa-0.5.0.data/platlib/pywfa/align.cpython-39-darwin.so' 2023-05-25T08:44:29,904 adding 'pywfa-0.5.0.data/platlib/pywfa/align.pxd' 2023-05-25T08:44:29,911 adding 'pywfa-0.5.0.data/platlib/pywfa/align.pyx' 2023-05-25T08:44:29,916 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/.DS_Store' 2023-05-25T08:44:29,918 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/.gitignore' 2023-05-25T08:44:29,921 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/LICENSE' 2023-05-25T08:44:29,924 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/Makefile' 2023-05-25T08:44:29,934 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/README.md' 2023-05-25T08:44:29,937 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/VERSION' 2023-05-25T08:44:29,941 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/Makefile' 2023-05-25T08:44:29,944 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/affine2p_penalties.c' 2023-05-25T08:44:29,947 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/affine2p_penalties.h' 2023-05-25T08:44:29,949 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/affine_penalties.c' 2023-05-25T08:44:29,952 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/affine_penalties.h' 2023-05-25T08:44:29,957 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/cigar.c' 2023-05-25T08:44:29,960 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/cigar.h' 2023-05-25T08:44:29,964 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/linear_penalties.h' 2023-05-25T08:44:29,967 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/score_matrix.c' 2023-05-25T08:44:29,970 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/alignment/score_matrix.h' 2023-05-25T08:44:29,977 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/affine2p_penalties.o' 2023-05-25T08:44:29,981 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/affine_penalties.o' 2023-05-25T08:44:29,987 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/bitmap.o' 2023-05-25T08:44:30,003 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/cigar.o' 2023-05-25T08:44:30,009 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/commons.o' 2023-05-25T08:44:30,013 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/dna_text.o' 2023-05-25T08:44:30,020 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/heatmap.o' 2023-05-25T08:44:30,036 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/mm_allocator.o' 2023-05-25T08:44:30,045 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/mm_stack.o' 2023-05-25T08:44:30,056 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/profiler_counter.o' 2023-05-25T08:44:30,066 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/profiler_timer.o' 2023-05-25T08:44:30,073 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/score_matrix.o' 2023-05-25T08:44:30,079 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/sequence_buffer.o' 2023-05-25T08:44:30,085 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/string_padded.o' 2023-05-25T08:44:30,092 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/vector.o' 2023-05-25T08:44:30,099 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront.o' 2023-05-25T08:44:30,116 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_align.o' 2023-05-25T08:44:30,135 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_aligner.o' 2023-05-25T08:44:30,141 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_attributes.o' 2023-05-25T08:44:30,160 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_backtrace.o' 2023-05-25T08:44:30,177 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o' 2023-05-25T08:44:30,192 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_backtrace_offload.o' 2023-05-25T08:44:30,210 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_bialign.o' 2023-05-25T08:44:30,228 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_components.o' 2023-05-25T08:44:30,244 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_compute.o' 2023-05-25T08:44:30,256 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_compute_affine.o' 2023-05-25T08:44:30,271 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_compute_affine2p.o' 2023-05-25T08:44:30,286 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_compute_edit.o' 2023-05-25T08:44:30,297 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_compute_linear.o' 2023-05-25T08:44:30,311 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_debug.o' 2023-05-25T08:44:30,327 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_display.o' 2023-05-25T08:44:30,343 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_extend.o' 2023-05-25T08:44:30,362 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_heuristic.o' 2023-05-25T08:44:30,376 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_pcigar.o' 2023-05-25T08:44:30,383 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_penalties.o' 2023-05-25T08:44:30,395 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_plot.o' 2023-05-25T08:44:30,406 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/build/wavefront_slab.o' 2023-05-25T08:44:30,411 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples/Makefile' 2023-05-25T08:44:30,414 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples/README.md' 2023-05-25T08:44:30,417 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples/wfa_adapt.c' 2023-05-25T08:44:30,420 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples/wfa_basic.c' 2023-05-25T08:44:30,423 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples/wfa_bindings.cpp' 2023-05-25T08:44:30,426 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples/wfa_lambda.cpp' 2023-05-25T08:44:30,429 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/examples/wfa_repeated.c' 2023-05-25T08:44:30,498 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img/heuristics.aband.10.10.png' 2023-05-25T08:44:30,584 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img/heuristics.aband.50.50.png' 2023-05-25T08:44:30,663 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img/heuristics.band.10.10.png' 2023-05-25T08:44:30,760 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img/heuristics.band.10.150.png' 2023-05-25T08:44:30,883 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img/heuristics.none.png' 2023-05-25T08:44:30,973 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png' 2023-05-25T08:44:31,094 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png' 2023-05-25T08:44:31,358 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/img/wfa.vs.swg.png' 2023-05-25T08:44:31,813 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/lib/libwfa.a' 2023-05-25T08:44:31,835 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts/fasta2seq.sh' 2023-05-25T08:44:31,838 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts/seq2fasta.sh' 2023-05-25T08:44:31,842 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts/wfa.alg.cmp.py' 2023-05-25T08:44:31,845 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh' 2023-05-25T08:44:31,848 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts/wfa.alg.rescore.py' 2023-05-25T08:44:31,852 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/scripts/wfa2png.py' 2023-05-25T08:44:31,856 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/Makefile' 2023-05-25T08:44:31,863 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/mm_allocator.c' 2023-05-25T08:44:31,866 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/mm_allocator.h' 2023-05-25T08:44:31,870 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/mm_stack.c' 2023-05-25T08:44:31,874 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/mm_stack.h' 2023-05-25T08:44:31,878 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/profiler_counter.c' 2023-05-25T08:44:31,881 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/profiler_counter.h' 2023-05-25T08:44:31,885 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/profiler_timer.c' 2023-05-25T08:44:31,888 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/system/profiler_timer.h' 2023-05-25T08:44:31,893 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/tools/.DS_Store' 2023-05-25T08:44:31,898 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/tools/README.md' 2023-05-25T08:44:31,902 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/Makefile' 2023-05-25T08:44:31,905 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/bitmap.c' 2023-05-25T08:44:31,908 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/bitmap.h' 2023-05-25T08:44:31,911 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/commons.c' 2023-05-25T08:44:31,915 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/commons.h' 2023-05-25T08:44:31,919 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/dna_text.c' 2023-05-25T08:44:31,922 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/dna_text.h' 2023-05-25T08:44:31,925 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/heatmap.c' 2023-05-25T08:44:31,928 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/heatmap.h' 2023-05-25T08:44:31,932 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/sequence_buffer.c' 2023-05-25T08:44:31,935 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/sequence_buffer.h' 2023-05-25T08:44:31,938 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/string_padded.c' 2023-05-25T08:44:31,941 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/string_padded.h' 2023-05-25T08:44:31,945 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/vector.c' 2023-05-25T08:44:31,948 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/utils/vector.h' 2023-05-25T08:44:31,954 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/Makefile' 2023-05-25T08:44:31,957 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront.c' 2023-05-25T08:44:31,960 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront.h' 2023-05-25T08:44:31,966 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_align.c' 2023-05-25T08:44:31,970 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_align.h' 2023-05-25T08:44:31,975 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_aligner.c' 2023-05-25T08:44:31,979 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_aligner.h' 2023-05-25T08:44:31,983 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_attributes.c' 2023-05-25T08:44:31,987 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_attributes.h' 2023-05-25T08:44:31,992 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace.c' 2023-05-25T08:44:31,995 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace.h' 2023-05-25T08:44:32,001 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c' 2023-05-25T08:44:32,005 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h' 2023-05-25T08:44:32,009 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c' 2023-05-25T08:44:32,012 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h' 2023-05-25T08:44:32,018 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_bialign.c' 2023-05-25T08:44:32,021 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_bialign.h' 2023-05-25T08:44:32,026 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_components.c' 2023-05-25T08:44:32,030 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_components.h' 2023-05-25T08:44:32,035 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute.c' 2023-05-25T08:44:32,038 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute.h' 2023-05-25T08:44:32,042 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c' 2023-05-25T08:44:32,045 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h' 2023-05-25T08:44:32,050 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c' 2023-05-25T08:44:32,053 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h' 2023-05-25T08:44:32,057 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c' 2023-05-25T08:44:32,060 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h' 2023-05-25T08:44:32,064 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c' 2023-05-25T08:44:32,067 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h' 2023-05-25T08:44:32,070 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_debug.c' 2023-05-25T08:44:32,073 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_debug.h' 2023-05-25T08:44:32,077 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_display.c' 2023-05-25T08:44:32,080 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_display.h' 2023-05-25T08:44:32,085 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_extend.c' 2023-05-25T08:44:32,088 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_extend.h' 2023-05-25T08:44:32,094 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_heuristic.c' 2023-05-25T08:44:32,097 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_heuristic.h' 2023-05-25T08:44:32,100 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_offset.h' 2023-05-25T08:44:32,104 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_pcigar.c' 2023-05-25T08:44:32,107 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_pcigar.h' 2023-05-25T08:44:32,111 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_penalties.c' 2023-05-25T08:44:32,114 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_penalties.h' 2023-05-25T08:44:32,118 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_plot.c' 2023-05-25T08:44:32,121 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_plot.h' 2023-05-25T08:44:32,125 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_slab.c' 2023-05-25T08:44:32,128 adding 'pywfa-0.5.0.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_slab.h' 2023-05-25T08:44:32,132 adding 'pywfa-0.5.0.data/platlib/pywfa/tests/__init__.py' 2023-05-25T08:44:32,134 adding 'pywfa-0.5.0.data/platlib/pywfa/tests/long.fa' 2023-05-25T08:44:32,137 adding 'pywfa-0.5.0.data/platlib/pywfa/tests/long.reference.fa' 2023-05-25T08:44:32,140 adding 'pywfa-0.5.0.data/platlib/pywfa/tests/short.fa' 2023-05-25T08:44:32,144 adding 'pywfa-0.5.0.data/platlib/pywfa/tests/short.reference.fa' 2023-05-25T08:44:32,147 adding 'pywfa-0.5.0.data/platlib/pywfa/tests/test.py' 2023-05-25T08:44:32,152 adding 'pywfa-0.5.0.dist-info/LICENSE' 2023-05-25T08:44:32,155 adding 'pywfa-0.5.0.dist-info/METADATA' 2023-05-25T08:44:32,157 adding 'pywfa-0.5.0.dist-info/WHEEL' 2023-05-25T08:44:32,159 adding 'pywfa-0.5.0.dist-info/top_level.txt' 2023-05-25T08:44:32,167 adding 'pywfa-0.5.0.dist-info/RECORD' 2023-05-25T08:44:32,304 removing build/bdist.linux-armv7l/wheel 2023-05-25T08:44:32,397 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.utils' is absent from the `packages` configuration. 2023-05-25T08:44:32,397 !! 2023-05-25T08:44:32,398 ******************************************************************************** 2023-05-25T08:44:32,399 ############################ 2023-05-25T08:44:32,399 # Package would be ignored # 2023-05-25T08:44:32,399 ############################ 2023-05-25T08:44:32,400 Python recognizes 'pywfa.WFA2_lib.utils' as an importable package[^1], 2023-05-25T08:44:32,400 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:32,401 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:32,401 package, please make sure that 'pywfa.WFA2_lib.utils' is explicitly added 2023-05-25T08:44:32,401 to the `packages` configuration field. 2023-05-25T08:44:32,402 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:32,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:32,402 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:32,403 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:32,404 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:32,404 If you don't want 'pywfa.WFA2_lib.utils' to be distributed and are 2023-05-25T08:44:32,405 already explicitly excluding 'pywfa.WFA2_lib.utils' via 2023-05-25T08:44:32,405 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:32,405 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:32,406 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:32,406 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:32,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:32,408 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:32,408 even if it does not contain any `.py` files. 2023-05-25T08:44:32,409 On the other hand, currently there is no concept of package data 2023-05-25T08:44:32,409 directory, all directories are treated like packages. 2023-05-25T08:44:32,410 ******************************************************************************** 2023-05-25T08:44:32,411 !! 2023-05-25T08:44:32,411 check.warn(importable) 2023-05-25T08:44:32,411 /tmp/pip-build-env-isyf4cv4/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.wavefront' is absent from the `packages` configuration. 2023-05-25T08:44:32,412 !! 2023-05-25T08:44:32,413 ******************************************************************************** 2023-05-25T08:44:32,413 ############################ 2023-05-25T08:44:32,414 # Package would be ignored # 2023-05-25T08:44:32,414 ############################ 2023-05-25T08:44:32,414 Python recognizes 'pywfa.WFA2_lib.wavefront' as an importable package[^1], 2023-05-25T08:44:32,415 but it is absent from setuptools' `packages` configuration. 2023-05-25T08:44:32,416 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-25T08:44:32,416 package, please make sure that 'pywfa.WFA2_lib.wavefront' is explicitly added 2023-05-25T08:44:32,417 to the `packages` configuration field. 2023-05-25T08:44:32,418 Alternatively, you can also rely on setuptools' discovery methods 2023-05-25T08:44:32,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-25T08:44:32,418 instead of `find_packages(...)`/`find:`). 2023-05-25T08:44:32,419 You can read more about "package discovery" on setuptools documentation page: 2023-05-25T08:44:32,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-25T08:44:32,421 If you don't want 'pywfa.WFA2_lib.wavefront' to be distributed and are 2023-05-25T08:44:32,422 already explicitly excluding 'pywfa.WFA2_lib.wavefront' via 2023-05-25T08:44:32,422 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-25T08:44:32,423 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-25T08:44:32,423 combination with a more fine grained `package-data` configuration. 2023-05-25T08:44:32,426 You can read more about "package data files" on setuptools documentation page: 2023-05-25T08:44:32,426 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-25T08:44:32,428 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-25T08:44:32,428 even if it does not contain any `.py` files. 2023-05-25T08:44:32,428 On the other hand, currently there is no concept of package data 2023-05-25T08:44:32,429 directory, all directories are treated like packages. 2023-05-25T08:44:32,429 ******************************************************************************** 2023-05-25T08:44:32,430 !! 2023-05-25T08:44:32,430 check.warn(importable) 2023-05-25T08:44:32,668 Building wheel for pywfa (pyproject.toml): finished with status 'done' 2023-05-25T08:44:32,925 Created wheel for pywfa: filename=pywfa-0.5.0-py3-none-any.whl size=4070730 sha256=c0e5f639a7f88ae98af4d5c07e5b3503b46adbc5b619c671394d2438d48274c9 2023-05-25T08:44:32,927 Stored in directory: /tmp/pip-ephem-wheel-cache-7q_gt859/wheels/e4/a4/5f/7a64cdb5d85c77ebb2c7d61160ff77f3b81bca1c08f3dc94fe 2023-05-25T08:44:32,973 Successfully built pywfa 2023-05-25T08:44:33,299 Removed build tracker: '/tmp/pip-build-tracker-t9gqd58c'