2023-05-25T14:25:19,328 Created temporary directory: /tmp/pip-build-tracker-dwb0bptq 2023-05-25T14:25:19,329 Initialized build tracking at /tmp/pip-build-tracker-dwb0bptq 2023-05-25T14:25:19,329 Created build tracker: /tmp/pip-build-tracker-dwb0bptq 2023-05-25T14:25:19,329 Entered build tracker: /tmp/pip-build-tracker-dwb0bptq 2023-05-25T14:25:19,330 Created temporary directory: /tmp/pip-wheel-oxvq6gq3 2023-05-25T14:25:19,333 Created temporary directory: /tmp/pip-ephem-wheel-cache-etx053u6 2023-05-25T14:25:19,356 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-25T14:25:19,359 2 location(s) to search for versions of fmsne: 2023-05-25T14:25:19,359 * https://pypi.org/simple/fmsne/ 2023-05-25T14:25:19,359 * https://www.piwheels.org/simple/fmsne/ 2023-05-25T14:25:19,360 Fetching project page and analyzing links: https://pypi.org/simple/fmsne/ 2023-05-25T14:25:19,360 Getting page https://pypi.org/simple/fmsne/ 2023-05-25T14:25:19,362 Found index url https://pypi.org/simple/ 2023-05-25T14:25:19,411 Fetched page https://pypi.org/simple/fmsne/ as application/vnd.pypi.simple.v1+json 2023-05-25T14:25:19,413 Found link https://files.pythonhosted.org/packages/68/e6/020a27969f5f0bff0e12e289e24f52953827c476daa03894140f48cbe242/fmsne-0.5.0.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.5.0 2023-05-25T14:25:19,413 Found link https://files.pythonhosted.org/packages/96/08/72bc50fc6a1f6c6459fde6b5a3dad656510f5e637cf3876035501b4cb981/fmsne-0.5.1.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.5.1 2023-05-25T14:25:19,414 Found link https://files.pythonhosted.org/packages/d8/ce/2dd8e5caf8fe4e62c34513a7e05d988cae70bbb4a77f2b517e9e5e1bd299/fmsne-0.6.0.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.0 2023-05-25T14:25:19,414 Found link https://files.pythonhosted.org/packages/50/41/564cf8c9462fbb2e493fcb5b6756b8dbfb54b4181c8070611dbf5618bbf2/fmsne-0.6.1.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.1 2023-05-25T14:25:19,414 Found link https://files.pythonhosted.org/packages/5d/b6/6a83ff68bca917baa2fcdede4858b56990d67e655f97994c255b88b18057/fmsne-0.6.2.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.2 2023-05-25T14:25:19,415 Found link https://files.pythonhosted.org/packages/b3/8e/7085d65dc2fd59779c7eb5c596d99842772b6dc67c31e0bd7c30c1f8d0b2/fmsne-0.6.3.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.3 2023-05-25T14:25:19,415 Found link https://files.pythonhosted.org/packages/c0/cc/5142b31be1d82b0643e8c7afbe7a6d4dc6eecbb1da815be49d780399d0f1/fmsne-0.6.4.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.4 2023-05-25T14:25:19,415 Found link https://files.pythonhosted.org/packages/d7/57/6080c1ae48689e970132e55c6906145cb9cfe8244e59122f0df9db2f056c/fmsne-0.6.5.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.5 2023-05-25T14:25:19,415 Fetching project page and analyzing links: https://www.piwheels.org/simple/fmsne/ 2023-05-25T14:25:19,416 Getting page https://www.piwheels.org/simple/fmsne/ 2023-05-25T14:25:19,417 Found index url https://www.piwheels.org/simple/ 2023-05-25T14:25:19,718 Fetched page https://www.piwheels.org/simple/fmsne/ as text/html 2023-05-25T14:25:19,727 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.5-cp37-cp37m-linux_armv7l.whl#sha256=f0a529a484f025b0db81eae7b8b0c0b0782451f973884a3b2b083aeb55143781 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,728 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.5-cp37-cp37m-linux_armv6l.whl#sha256=f0a529a484f025b0db81eae7b8b0c0b0782451f973884a3b2b083aeb55143781 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,728 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.4-cp39-cp39-linux_armv7l.whl#sha256=59138ba3c3d9cd32c99698bf4b422501a5d915cba539817fe0bc8a234e27da64 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,728 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.4-cp39-cp39-linux_armv6l.whl#sha256=59138ba3c3d9cd32c99698bf4b422501a5d915cba539817fe0bc8a234e27da64 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,728 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.4-cp37-cp37m-linux_armv7l.whl#sha256=96611cf810b634d154c6e53909d06cd562359d8d0f9ef968e14cdd83bce5383c (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,729 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.4-cp37-cp37m-linux_armv6l.whl#sha256=96611cf810b634d154c6e53909d06cd562359d8d0f9ef968e14cdd83bce5383c (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,729 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.3-cp39-cp39-linux_armv7l.whl#sha256=43502a839b3fbc05d3ad7731206bba7e22eb1e217037819c6bfe135967c66e5f (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,729 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=43502a839b3fbc05d3ad7731206bba7e22eb1e217037819c6bfe135967c66e5f (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,729 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.3-cp37-cp37m-linux_armv7l.whl#sha256=57f6040dd322c49531bebf107accfac5355d07f14a7092bc4bc0f106f6470702 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,729 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.3-cp37-cp37m-linux_armv6l.whl#sha256=57f6040dd322c49531bebf107accfac5355d07f14a7092bc4bc0f106f6470702 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,729 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.2-cp39-cp39-linux_armv7l.whl#sha256=15db9a17dfdbcad756af3e3ef1809d8ec381bee2256388329eff98bbcbf21f5d (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,730 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.2-cp39-cp39-linux_armv6l.whl#sha256=15db9a17dfdbcad756af3e3ef1809d8ec381bee2256388329eff98bbcbf21f5d (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,730 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.2-cp37-cp37m-linux_armv7l.whl#sha256=382ff444b29114b368f19c182534790eaf0a3924f0205cbbf0b7e1bb11d31458 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,730 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.2-cp37-cp37m-linux_armv6l.whl#sha256=382ff444b29114b368f19c182534790eaf0a3924f0205cbbf0b7e1bb11d31458 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,730 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=45caa023175620cd6cfcb5634d52b36bb7799f498c016f628b7d75c39452b8dc (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,730 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=45caa023175620cd6cfcb5634d52b36bb7799f498c016f628b7d75c39452b8dc (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,731 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=c1471b4c223e22ecfaf92ba4021f2a1df722ccc3cbb2bdd3a752e49dc0688ed7 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,731 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=c1471b4c223e22ecfaf92ba4021f2a1df722ccc3cbb2bdd3a752e49dc0688ed7 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,731 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=12d8f661180eb3f4dbeb96e95478c60882344799d36195d9fe585d34fc01b925 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,731 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=12d8f661180eb3f4dbeb96e95478c60882344799d36195d9fe585d34fc01b925 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,731 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=c67fc36178a838473be10c65f0a58ecb6139c5507f51b228d837ed052de29350 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,732 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=c67fc36178a838473be10c65f0a58ecb6139c5507f51b228d837ed052de29350 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,732 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.5.1-cp39-cp39-linux_armv7l.whl#sha256=3c1346b46c6e8605472943558489006c6400a77c7370321376daca8f9af1e410 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,732 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.5.1-cp39-cp39-linux_armv6l.whl#sha256=3c1346b46c6e8605472943558489006c6400a77c7370321376daca8f9af1e410 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,732 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.5.1-cp37-cp37m-linux_armv7l.whl#sha256=5294d2fbf369035317ed6d81f24d58b19d3e0cd6f642a0c4131a4d875e76a13d (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,732 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.5.1-cp37-cp37m-linux_armv6l.whl#sha256=5294d2fbf369035317ed6d81f24d58b19d3e0cd6f642a0c4131a4d875e76a13d (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,733 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.5.0-cp39-cp39-linux_armv7l.whl#sha256=56992670c18c217199fed426b53360632a27c3cef74c761a2c6a2707162562cf (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,733 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.5.0-cp39-cp39-linux_armv6l.whl#sha256=56992670c18c217199fed426b53360632a27c3cef74c761a2c6a2707162562cf (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,733 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.5.0-cp37-cp37m-linux_armv7l.whl#sha256=5415087d2de4bba9c090746b7b04952603a3fded30a73ab0f7c4a1917fbcd3e1 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,733 Skipping link: No binaries permitted for fmsne: https://www.piwheels.org/simple/fmsne/fmsne-0.5.0-cp37-cp37m-linux_armv6l.whl#sha256=5415087d2de4bba9c090746b7b04952603a3fded30a73ab0f7c4a1917fbcd3e1 (from https://www.piwheels.org/simple/fmsne/) 2023-05-25T14:25:19,733 Skipping link: not a file: https://www.piwheels.org/simple/fmsne/ 2023-05-25T14:25:19,734 Skipping link: not a file: https://pypi.org/simple/fmsne/ 2023-05-25T14:25:19,754 Given no hashes to check 1 links for project 'fmsne': discarding no candidates 2023-05-25T14:25:19,771 Collecting fmsne==0.6.5 2023-05-25T14:25:19,773 Created temporary directory: /tmp/pip-unpack-zlb5da6_ 2023-05-25T14:25:19,827 Downloading fmsne-0.6.5.tar.gz (283 kB) 2023-05-25T14:25:19,995 Added fmsne==0.6.5 from https://files.pythonhosted.org/packages/d7/57/6080c1ae48689e970132e55c6906145cb9cfe8244e59122f0df9db2f056c/fmsne-0.6.5.tar.gz to build tracker '/tmp/pip-build-tracker-dwb0bptq' 2023-05-25T14:25:19,996 Running setup.py (path:/tmp/pip-wheel-oxvq6gq3/fmsne_5972c605a898463aa7d8b7de10764123/setup.py) egg_info for package fmsne 2023-05-25T14:25:19,997 Created temporary directory: /tmp/pip-pip-egg-info-810a2x2d 2023-05-25T14:25:19,997 Preparing metadata (setup.py): started 2023-05-25T14:25:19,998 Running command python setup.py egg_info 2023-05-25T14:25:21,737 /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-05-25T14:25:21,737 !! 2023-05-25T14:25:21,737 ******************************************************************************** 2023-05-25T14:25:21,738 Requirements should be satisfied by a PEP 517 installer. 2023-05-25T14:25:21,738 If you are using pip, you can try `pip install --use-pep517`. 2023-05-25T14:25:21,738 ******************************************************************************** 2023-05-25T14:25:21,738 !! 2023-05-25T14:25:21,738 dist.fetch_build_eggs(dist.setup_requires) 2023-05-25T14:25:21,877 running egg_info 2023-05-25T14:25:21,878 creating /tmp/pip-pip-egg-info-810a2x2d/fmsne.egg-info 2023-05-25T14:25:21,902 writing /tmp/pip-pip-egg-info-810a2x2d/fmsne.egg-info/PKG-INFO 2023-05-25T14:25:21,905 writing dependency_links to /tmp/pip-pip-egg-info-810a2x2d/fmsne.egg-info/dependency_links.txt 2023-05-25T14:25:21,907 writing requirements to /tmp/pip-pip-egg-info-810a2x2d/fmsne.egg-info/requires.txt 2023-05-25T14:25:21,908 writing top-level names to /tmp/pip-pip-egg-info-810a2x2d/fmsne.egg-info/top_level.txt 2023-05-25T14:25:21,910 writing manifest file '/tmp/pip-pip-egg-info-810a2x2d/fmsne.egg-info/SOURCES.txt' 2023-05-25T14:25:22,008 reading manifest file '/tmp/pip-pip-egg-info-810a2x2d/fmsne.egg-info/SOURCES.txt' 2023-05-25T14:25:22,009 reading manifest template 'MANIFEST.in' 2023-05-25T14:25:22,031 adding license file 'LICENCE.md' 2023-05-25T14:25:22,033 writing manifest file '/tmp/pip-pip-egg-info-810a2x2d/fmsne.egg-info/SOURCES.txt' 2023-05-25T14:25:22,181 Preparing metadata (setup.py): finished with status 'done' 2023-05-25T14:25:22,187 Source in /tmp/pip-wheel-oxvq6gq3/fmsne_5972c605a898463aa7d8b7de10764123 has version 0.6.5, which satisfies requirement fmsne==0.6.5 from https://files.pythonhosted.org/packages/d7/57/6080c1ae48689e970132e55c6906145cb9cfe8244e59122f0df9db2f056c/fmsne-0.6.5.tar.gz 2023-05-25T14:25:22,187 Removed fmsne==0.6.5 from https://files.pythonhosted.org/packages/d7/57/6080c1ae48689e970132e55c6906145cb9cfe8244e59122f0df9db2f056c/fmsne-0.6.5.tar.gz from build tracker '/tmp/pip-build-tracker-dwb0bptq' 2023-05-25T14:25:22,193 Created temporary directory: /tmp/pip-unpack-q9xpmv3k 2023-05-25T14:25:22,194 Building wheels for collected packages: fmsne 2023-05-25T14:25:22,198 Created temporary directory: /tmp/pip-wheel-40467j4r 2023-05-25T14:25:22,198 Building wheel for fmsne (setup.py): started 2023-05-25T14:25:22,199 Destination directory: /tmp/pip-wheel-40467j4r 2023-05-25T14:25:22,199 Running command python setup.py bdist_wheel 2023-05-25T14:25:23,817 /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-05-25T14:25:23,817 !! 2023-05-25T14:25:23,818 ******************************************************************************** 2023-05-25T14:25:23,818 Requirements should be satisfied by a PEP 517 installer. 2023-05-25T14:25:23,818 If you are using pip, you can try `pip install --use-pep517`. 2023-05-25T14:25:23,818 ******************************************************************************** 2023-05-25T14:25:23,818 !! 2023-05-25T14:25:23,818 dist.fetch_build_eggs(dist.setup_requires) 2023-05-25T14:25:23,970 running bdist_wheel 2023-05-25T14:25:24,063 running build 2023-05-25T14:25:24,063 running build_py 2023-05-25T14:25:24,089 creating build 2023-05-25T14:25:24,090 creating build/lib.linux-armv7l-cpython-39 2023-05-25T14:25:24,091 creating build/lib.linux-armv7l-cpython-39/fmsne 2023-05-25T14:25:24,092 copying fmsne/fmsne.py -> build/lib.linux-armv7l-cpython-39/fmsne 2023-05-25T14:25:24,095 copying fmsne/__init__.py -> build/lib.linux-armv7l-cpython-39/fmsne 2023-05-25T14:25:24,097 running build_ext 2023-05-25T14:25:24,104 building 'fmsne_implem' extension 2023-05-25T14:25:24,105 creating build/temp.linux-armv7l-cpython-39 2023-05-25T14:25:24,105 creating build/temp.linux-armv7l-cpython-39/fmsne 2023-05-25T14:25:24,106 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ifmsne -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ifmsne -I/usr/include/python3.9 -c fmsne/fmsne_implem.cpp -o build/temp.linux-armv7l-cpython-39/fmsne/fmsne_implem.o 2023-05-25T14:25:24,467 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-05-25T14:25:24,467 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-25T14:25:24,467 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-05-25T14:25:24,467 from fmsne/fmsne_implem.cpp:781: 2023-05-25T14:25:24,467 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-25T14:25:24,468 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-25T14:25:24,468 | ^~~~~~~ 2023-05-25T14:25:25,413 In file included from fmsne/fmsne_implem.cpp:794: 2023-05-25T14:25:25,413 fmsne/vptree.h: In member function ‘void VpTree::search_rec(const VpTree::Node*, const double*, int, std::priority_queue&)’: 2023-05-25T14:25:25,414 fmsne/vptree.h:442:37: warning: comparison of integer expressions of different signedness: ‘std::priority_queue::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-05-25T14:25:25,414 442 | bool full = heap.size() == k; 2023-05-25T14:25:25,414 | ~~~~~~~~~~~~^~~~ 2023-05-25T14:25:25,414 fmsne/vptree.h:450:37: warning: comparison of integer expressions of different signedness: ‘std::priority_queue::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-05-25T14:25:25,414 450 | if (full || heap.size() == k) { 2023-05-25T14:25:25,415 | ~~~~~~~~~~~~^~~~ 2023-05-25T14:25:29,568 fmsne/fmsne_implem.cpp: In function ‘double __pyx_f_12fmsne_implem_approxInteractions_SpNode(const __pyx_t_12fmsne_implem_SpNode*, const double*, double, double, double*, double**, double***, int, const double*, double**, double*, Py_ssize_t, Py_ssize_t)’: 2023-05-25T14:25:29,568 fmsne/fmsne_implem.cpp:15328:100: warning: ‘__pyx_v_nptm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-25T14:25:29,568 15328 | ((__pyx_v_acc_vv[__pyx_t_9])[__pyx_t_10]) = (((__pyx_v_acc_vv[__pyx_t_9])[__pyx_t_10]) + __pyx_v_nptm); 2023-05-25T14:25:29,568 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-05-25T14:25:29,934 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2023-05-25T14:25:29,934 from /usr/include/c++/10/algorithm:62, 2023-05-25T14:25:29,935 from fmsne/fmsne_implem.cpp:790: 2023-05-25T14:25:29,935 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = VpTree::HeapItem; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: 2023-05-25T14:25:29,935 /usr/include/c++/10/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-05-25T14:25:29,935 134 | __push_heap(_RandomAccessIterator __first, 2023-05-25T14:25:29,935 | ^~~~~~~~~~~ 2023-05-25T14:25:29,955 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = VpTree::HeapItem; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-05-25T14:25:29,955 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-05-25T14:25:29,955 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-05-25T14:25:29,956 | ^~~~~~~~~~~~~ 2023-05-25T14:25:41,315 fmsne/fmsne_implem.cpp: In function ‘__pyx_t_12fmsne_implem_SpTree* __pyx_f_12fmsne_implem_cinit_SpTree(const double*, Py_ssize_t, Py_ssize_t, int, const double*, Py_ssize_t, int)’: 2023-05-25T14:25:41,315 fmsne/fmsne_implem.cpp:13015:30: warning: ‘__pyx_v_psa’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-25T14:25:41,315 13015 | __pyx_v_node->suppl_attr = ((double *)__pyx_v_suppl_attr); 2023-05-25T14:25:41,316 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-25T14:25:41,316 fmsne/fmsne_implem.cpp:13087:11: note: ‘__pyx_v_psa’ was declared here 2023-05-25T14:25:41,316 13087 | double *__pyx_v_psa; 2023-05-25T14:25:41,316 | ^~~~~~~~~~~ 2023-05-25T14:25:41,316 fmsne/fmsne_implem.cpp:13086:11: warning: ‘__pyx_v_pcm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-25T14:25:41,316 13086 | double *__pyx_v_pcm; 2023-05-25T14:25:41,316 | ^~~~~~~~~~~ 2023-05-25T14:25:43,032 In file included from /usr/include/c++/10/vector:72, 2023-05-25T14:25:43,032 from /usr/include/c++/10/queue:61, 2023-05-25T14:25:43,033 from fmsne/vptree.h:51, 2023-05-25T14:25:43,033 from fmsne/fmsne_implem.cpp:794: 2023-05-25T14:25:43,033 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {VpTree::HeapItem}; _Tp = VpTree::HeapItem; _Alloc = std::allocator]’: 2023-05-25T14:25:43,033 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-05-25T14:25:43,033 426 | vector<_Tp, _Alloc>:: 2023-05-25T14:25:43,033 | ^~~~~~~~~~~~~~~~~~~ 2023-05-25T14:25:43,090 /usr/include/c++/10/bits/vector.tcc: In member function ‘void VpTree::search_rec(const VpTree::Node*, const double*, int, std::priority_queue&)’: 2023-05-25T14:25:43,090 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-05-25T14:25:43,091 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-25T14:25:43,091 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-25T14:25:43,830 fmsne/fmsne_implem.cpp: In function ‘int __pyx_f_12fmsne_implem_f_nn_ds_hdprec(int, int*, int, Py_ssize_t, int*, int*, int*, int, double*, Py_ssize_t, int***, int**, double***, double***, int, int)’: 2023-05-25T14:25:43,830 fmsne/fmsne_implem.cpp:18538:153: warning: ‘__pyx_v_i_sds’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-25T14:25:43,830 18538 | (((__pyx_v_arr_nn_i_rs[__pyx_v_rs])[__pyx_v_i])[__pyx_v_isa]) = (__pyx_v_i_sds[(((__pyx_v_arr_nn_i_rs[__pyx_v_rs])[__pyx_v_i])[__pyx_v_isa])]); 2023-05-25T14:25:43,830 | ^ 2023-05-25T14:25:43,830 fmsne/fmsne_implem.cpp:19104:17: warning: ‘__pyx_v_Xhd_cur’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-25T14:25:43,830 19104 | PyMem_Free(__pyx_v_Xhd_cur); 2023-05-25T14:25:43,831 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-05-25T14:25:43,831 fmsne/fmsne_implem.cpp:18567:9: warning: ‘__pyx_v_in_cur_ds’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-25T14:25:43,831 18567 | if (__pyx_t_1) { 2023-05-25T14:25:43,831 | ^~ 2023-05-25T14:25:43,831 fmsne/fmsne_implem.cpp:19133:14: warning: ‘__pyx_v_vpt’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-25T14:25:43,831 19133 | delete __pyx_v_vpt; 2023-05-25T14:25:43,832 | ^~~~~~~~~~~ 2023-05-25T14:25:43,832 fmsne/fmsne_implem.cpp:18397:53: warning: ‘__pyx_v_nsr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-25T14:25:43,832 18397 | __pyx_t_5 = ((__pyx_v_i == (__pyx_v_i_sds[__pyx_v_nsr])) != 0); 2023-05-25T14:25:43,832 | ^~~~~~~~~~~ 2023-05-25T14:25:51,340 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ifmsne -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ifmsne -I/usr/include/python3.9 -c fmsne/lbfgs.c -o build/temp.linux-armv7l-cpython-39/fmsne/lbfgs.o 2023-05-25T14:25:52,543 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/fmsne/fmsne_implem.o build/temp.linux-armv7l-cpython-39/fmsne/lbfgs.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/fmsne_implem.cpython-39-arm-linux-gnueabihf.so 2023-05-25T14:25:52,900 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-05-25T14:25:52,900 !! 2023-05-25T14:25:52,901 ******************************************************************************** 2023-05-25T14:25:52,901 Please avoid running ``setup.py`` directly. 2023-05-25T14:25:52,901 Instead, use pypa/build, pypa/installer, pypa/build or 2023-05-25T14:25:52,901 other standards-based tools. 2023-05-25T14:25:52,901 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-05-25T14:25:52,902 ******************************************************************************** 2023-05-25T14:25:52,902 !! 2023-05-25T14:25:52,902 self.initialize_options() 2023-05-25T14:25:52,926 installing to build/bdist.linux-armv7l/wheel 2023-05-25T14:25:52,926 running install 2023-05-25T14:25:52,952 running install_lib 2023-05-25T14:25:52,981 creating build/bdist.linux-armv7l 2023-05-25T14:25:52,981 creating build/bdist.linux-armv7l/wheel 2023-05-25T14:25:52,983 creating build/bdist.linux-armv7l/wheel/fmsne 2023-05-25T14:25:52,984 copying build/lib.linux-armv7l-cpython-39/fmsne/fmsne.py -> build/bdist.linux-armv7l/wheel/fmsne 2023-05-25T14:25:52,987 copying build/lib.linux-armv7l-cpython-39/fmsne/__init__.py -> build/bdist.linux-armv7l/wheel/fmsne 2023-05-25T14:25:52,989 copying build/lib.linux-armv7l-cpython-39/fmsne_implem.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-05-25T14:25:53,023 running install_egg_info 2023-05-25T14:25:53,073 running egg_info 2023-05-25T14:25:53,096 writing fmsne.egg-info/PKG-INFO 2023-05-25T14:25:53,099 writing dependency_links to fmsne.egg-info/dependency_links.txt 2023-05-25T14:25:53,101 writing requirements to fmsne.egg-info/requires.txt 2023-05-25T14:25:53,103 writing top-level names to fmsne.egg-info/top_level.txt 2023-05-25T14:25:53,131 reading manifest file 'fmsne.egg-info/SOURCES.txt' 2023-05-25T14:25:53,134 reading manifest template 'MANIFEST.in' 2023-05-25T14:25:53,155 adding license file 'LICENCE.md' 2023-05-25T14:25:53,158 writing manifest file 'fmsne.egg-info/SOURCES.txt' 2023-05-25T14:25:53,160 Copying fmsne.egg-info to build/bdist.linux-armv7l/wheel/fmsne-0.6.5-py3.9.egg-info 2023-05-25T14:25:53,171 running install_scripts 2023-05-25T14:25:53,188 adding license file "LICENCE.md" (matched pattern "LICEN[CS]E*") 2023-05-25T14:25:53,193 creating build/bdist.linux-armv7l/wheel/fmsne-0.6.5.dist-info/WHEEL 2023-05-25T14:25:53,195 creating '/tmp/pip-wheel-40467j4r/fmsne-0.6.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-25T14:25:53,517 adding 'fmsne_implem.cpython-39-arm-linux-gnueabihf.so' 2023-05-25T14:25:53,529 adding 'fmsne/__init__.py' 2023-05-25T14:25:53,534 adding 'fmsne/fmsne.py' 2023-05-25T14:25:53,537 adding 'fmsne-0.6.5.dist-info/LICENCE.md' 2023-05-25T14:25:53,539 adding 'fmsne-0.6.5.dist-info/METADATA' 2023-05-25T14:25:53,541 adding 'fmsne-0.6.5.dist-info/WHEEL' 2023-05-25T14:25:53,542 adding 'fmsne-0.6.5.dist-info/top_level.txt' 2023-05-25T14:25:53,543 adding 'fmsne-0.6.5.dist-info/RECORD' 2023-05-25T14:25:53,551 removing build/bdist.linux-armv7l/wheel 2023-05-25T14:25:53,718 Building wheel for fmsne (setup.py): finished with status 'done' 2023-05-25T14:25:53,727 Created wheel for fmsne: filename=fmsne-0.6.5-cp39-cp39-linux_armv7l.whl size=602942 sha256=a38c800db67c81aeba6a210fa3569c495485267135e027f9e5cf03ea29791852 2023-05-25T14:25:53,728 Stored in directory: /tmp/pip-ephem-wheel-cache-etx053u6/wheels/15/a6/5f/554a010f28d43c94c8e9d73f49896cdb331b5fc7b08677c6fe 2023-05-25T14:25:53,741 Successfully built fmsne 2023-05-25T14:25:53,768 Removed build tracker: '/tmp/pip-build-tracker-dwb0bptq'