2023-05-26T10:46:48,298 Created temporary directory: /tmp/pip-build-tracker-m_jidb3b 2023-05-26T10:46:48,299 Initialized build tracking at /tmp/pip-build-tracker-m_jidb3b 2023-05-26T10:46:48,299 Created build tracker: /tmp/pip-build-tracker-m_jidb3b 2023-05-26T10:46:48,300 Entered build tracker: /tmp/pip-build-tracker-m_jidb3b 2023-05-26T10:46:48,300 Created temporary directory: /tmp/pip-wheel-l75nzydq 2023-05-26T10:46:48,303 Created temporary directory: /tmp/pip-ephem-wheel-cache-aeb7fxrc 2023-05-26T10:46:48,326 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-26T10:46:48,330 2 location(s) to search for versions of pmx-biobb: 2023-05-26T10:46:48,330 * https://pypi.org/simple/pmx-biobb/ 2023-05-26T10:46:48,330 * https://www.piwheels.org/simple/pmx-biobb/ 2023-05-26T10:46:48,330 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/ 2023-05-26T10:46:48,331 Getting page https://pypi.org/simple/pmx-biobb/ 2023-05-26T10:46:48,332 Found index url https://pypi.org/simple/ 2023-05-26T10:46:48,382 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json 2023-05-26T10:46:48,385 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,385 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,386 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,386 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,386 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,386 Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,387 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,387 Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0 2023-05-26T10:46:48,388 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,388 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,388 Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1 2023-05-26T10:46:48,389 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,389 Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2 2023-05-26T10:46:48,389 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,390 Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3 2023-05-26T10:46:48,390 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/ 2023-05-26T10:46:48,391 Getting page https://www.piwheels.org/simple/pmx-biobb/ 2023-05-26T10:46:48,392 Found index url https://www.piwheels.org/simple/ 2023-05-26T10:46:48,548 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html 2023-05-26T10:46:48,553 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,554 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,554 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,554 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,554 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,555 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,555 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,555 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,555 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,555 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T10:46:48,556 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,556 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,556 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,556 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T10:46:48,556 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/ 2023-05-26T10:46:48,557 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/ 2023-05-26T10:46:48,574 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates 2023-05-26T10:46:48,591 Collecting pmx-biobb==3.0.2 2023-05-26T10:46:48,593 Created temporary directory: /tmp/pip-unpack-cyku2dlt 2023-05-26T10:46:48,636 Downloading pmx_biobb-3.0.2.tar.gz (5.3 MB) 2023-05-26T10:46:51,080 Added pmx-biobb==3.0.2 from https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-m_jidb3b' 2023-05-26T10:46:51,082 Running setup.py (path:/tmp/pip-wheel-l75nzydq/pmx-biobb_1afc2a120990412fa5682178b9793b53/setup.py) egg_info for package pmx-biobb 2023-05-26T10:46:51,082 Created temporary directory: /tmp/pip-pip-egg-info-wa70dp2s 2023-05-26T10:46:51,083 Preparing metadata (setup.py): started 2023-05-26T10:46:51,084 Running command python setup.py egg_info 2023-05-26T10:46:51,734 running egg_info 2023-05-26T10:46:51,736 creating /tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info 2023-05-26T10:46:51,760 writing /tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info/PKG-INFO 2023-05-26T10:46:51,763 writing dependency_links to /tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info/dependency_links.txt 2023-05-26T10:46:51,765 writing entry points to /tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info/entry_points.txt 2023-05-26T10:46:51,766 writing requirements to /tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info/requires.txt 2023-05-26T10:46:51,767 writing top-level names to /tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info/top_level.txt 2023-05-26T10:46:51,769 writing manifest file '/tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T10:46:52,030 reading manifest file '/tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T10:46:52,031 reading manifest template 'MANIFEST.in' 2023-05-26T10:46:52,055 adding license file 'LICENSE' 2023-05-26T10:46:52,068 writing manifest file '/tmp/pip-pip-egg-info-wa70dp2s/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T10:46:52,139 Preparing metadata (setup.py): finished with status 'done' 2023-05-26T10:46:52,144 Source in /tmp/pip-wheel-l75nzydq/pmx-biobb_1afc2a120990412fa5682178b9793b53 has version 3.0.2, which satisfies requirement pmx-biobb==3.0.2 from https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz 2023-05-26T10:46:52,145 Removed pmx-biobb==3.0.2 from https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-m_jidb3b' 2023-05-26T10:46:52,151 Created temporary directory: /tmp/pip-unpack-sljh3x_7 2023-05-26T10:46:52,152 Building wheels for collected packages: pmx-biobb 2023-05-26T10:46:52,156 Created temporary directory: /tmp/pip-wheel-g0jiiw_o 2023-05-26T10:46:52,156 Building wheel for pmx-biobb (setup.py): started 2023-05-26T10:46:52,157 Destination directory: /tmp/pip-wheel-g0jiiw_o 2023-05-26T10:46:52,157 Running command python setup.py bdist_wheel 2023-05-26T10:46:52,983 running bdist_wheel 2023-05-26T10:46:53,249 running build 2023-05-26T10:46:53,249 running build_py 2023-05-26T10:46:53,253 creating build 2023-05-26T10:46:53,253 creating build/lib.linux-armv7l-cpython-39 2023-05-26T10:46:53,254 creating build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,255 copying src/pmx/rosetta.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,258 copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,260 copying src/pmx/rosetta_analyze.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,263 copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,265 copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,267 copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,270 copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,272 copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,274 copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,276 copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,277 copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,279 copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,283 copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,285 copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,287 copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,289 copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,291 copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,296 copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,298 copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,303 copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,306 copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,308 copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,312 copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,315 copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,318 copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,320 copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,322 copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,324 copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T10:46:53,326 running egg_info 2023-05-26T10:46:53,381 writing src/pmx_biobb.egg-info/PKG-INFO 2023-05-26T10:46:53,383 writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt 2023-05-26T10:46:53,384 writing entry points to src/pmx_biobb.egg-info/entry_points.txt 2023-05-26T10:46:53,386 writing requirements to src/pmx_biobb.egg-info/requires.txt 2023-05-26T10:46:53,387 writing top-level names to src/pmx_biobb.egg-info/top_level.txt 2023-05-26T10:46:53,417 reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T10:46:53,426 reading manifest template 'MANIFEST.in' 2023-05-26T10:46:53,443 adding license file 'LICENSE' 2023-05-26T10:46:53,461 writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T10:46:53,464 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data' is absent from the `packages` configuration. 2023-05-26T10:46:53,464 !! 2023-05-26T10:46:53,465 ******************************************************************************** 2023-05-26T10:46:53,465 ############################ 2023-05-26T10:46:53,465 # Package would be ignored # 2023-05-26T10:46:53,465 ############################ 2023-05-26T10:46:53,465 Python recognizes 'pmx.data' as an importable package[^1], 2023-05-26T10:46:53,465 but it is absent from setuptools' `packages` configuration. 2023-05-26T10:46:53,466 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T10:46:53,466 package, please make sure that 'pmx.data' is explicitly added 2023-05-26T10:46:53,466 to the `packages` configuration field. 2023-05-26T10:46:53,466 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T10:46:53,466 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T10:46:53,466 instead of `find_packages(...)`/`find:`). 2023-05-26T10:46:53,466 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T10:46:53,467 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T10:46:53,467 If you don't want 'pmx.data' to be distributed and are 2023-05-26T10:46:53,467 already explicitly excluding 'pmx.data' via 2023-05-26T10:46:53,467 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T10:46:53,467 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T10:46:53,467 combination with a more fine grained `package-data` configuration. 2023-05-26T10:46:53,468 You can read more about "package data files" on setuptools documentation page: 2023-05-26T10:46:53,468 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T10:46:53,468 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T10:46:53,468 even if it does not contain any `.py` files. 2023-05-26T10:46:53,468 On the other hand, currently there is no concept of package data 2023-05-26T10:46:53,469 directory, all directories are treated like packages. 2023-05-26T10:46:53,469 ******************************************************************************** 2023-05-26T10:46:53,469 !! 2023-05-26T10:46:53,469 check.warn(importable) 2023-05-26T10:46:53,469 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration. 2023-05-26T10:46:53,469 !! 2023-05-26T10:46:53,470 ******************************************************************************** 2023-05-26T10:46:53,470 ############################ 2023-05-26T10:46:53,470 # Package would be ignored # 2023-05-26T10:46:53,470 ############################ 2023-05-26T10:46:53,470 Python recognizes 'pmx.data.mutff' as an importable package[^1], 2023-05-26T10:46:53,470 but it is absent from setuptools' `packages` configuration. 2023-05-26T10:46:53,470 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T10:46:53,470 package, please make sure that 'pmx.data.mutff' is explicitly added 2023-05-26T10:46:53,471 to the `packages` configuration field. 2023-05-26T10:46:53,471 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T10:46:53,471 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T10:46:53,471 instead of `find_packages(...)`/`find:`). 2023-05-26T10:46:53,471 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T10:46:53,471 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T10:46:53,472 If you don't want 'pmx.data.mutff' to be distributed and are 2023-05-26T10:46:53,472 already explicitly excluding 'pmx.data.mutff' via 2023-05-26T10:46:53,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T10:46:53,472 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T10:46:53,472 combination with a more fine grained `package-data` configuration. 2023-05-26T10:46:53,472 You can read more about "package data files" on setuptools documentation page: 2023-05-26T10:46:53,473 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T10:46:53,473 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T10:46:53,473 even if it does not contain any `.py` files. 2023-05-26T10:46:53,473 On the other hand, currently there is no concept of package data 2023-05-26T10:46:53,473 directory, all directories are treated like packages. 2023-05-26T10:46:53,473 ******************************************************************************** 2023-05-26T10:46:53,474 !! 2023-05-26T10:46:53,474 check.warn(importable) 2023-05-26T10:46:53,485 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration. 2023-05-26T10:46:53,485 !! 2023-05-26T10:46:53,485 ******************************************************************************** 2023-05-26T10:46:53,485 ############################ 2023-05-26T10:46:53,485 # Package would be ignored # 2023-05-26T10:46:53,486 ############################ 2023-05-26T10:46:53,486 Python recognizes 'pmx.extensions.pmx' as an importable package[^1], 2023-05-26T10:46:53,486 but it is absent from setuptools' `packages` configuration. 2023-05-26T10:46:53,486 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T10:46:53,486 package, please make sure that 'pmx.extensions.pmx' is explicitly added 2023-05-26T10:46:53,486 to the `packages` configuration field. 2023-05-26T10:46:53,486 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T10:46:53,487 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T10:46:53,487 instead of `find_packages(...)`/`find:`). 2023-05-26T10:46:53,487 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T10:46:53,487 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T10:46:53,487 If you don't want 'pmx.extensions.pmx' to be distributed and are 2023-05-26T10:46:53,488 already explicitly excluding 'pmx.extensions.pmx' via 2023-05-26T10:46:53,488 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T10:46:53,488 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T10:46:53,488 combination with a more fine grained `package-data` configuration. 2023-05-26T10:46:53,488 You can read more about "package data files" on setuptools documentation page: 2023-05-26T10:46:53,488 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T10:46:53,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T10:46:53,489 even if it does not contain any `.py` files. 2023-05-26T10:46:53,489 On the other hand, currently there is no concept of package data 2023-05-26T10:46:53,489 directory, all directories are treated like packages. 2023-05-26T10:46:53,489 ******************************************************************************** 2023-05-26T10:46:53,489 !! 2023-05-26T10:46:53,490 check.warn(importable) 2023-05-26T10:46:53,490 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration. 2023-05-26T10:46:53,490 !! 2023-05-26T10:46:53,490 ******************************************************************************** 2023-05-26T10:46:53,490 ############################ 2023-05-26T10:46:53,490 # Package would be ignored # 2023-05-26T10:46:53,490 ############################ 2023-05-26T10:46:53,491 Python recognizes 'pmx.extensions.xdr' as an importable package[^1], 2023-05-26T10:46:53,491 but it is absent from setuptools' `packages` configuration. 2023-05-26T10:46:53,491 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T10:46:53,491 package, please make sure that 'pmx.extensions.xdr' is explicitly added 2023-05-26T10:46:53,491 to the `packages` configuration field. 2023-05-26T10:46:53,491 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T10:46:53,491 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T10:46:53,492 instead of `find_packages(...)`/`find:`). 2023-05-26T10:46:53,492 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T10:46:53,492 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T10:46:53,492 If you don't want 'pmx.extensions.xdr' to be distributed and are 2023-05-26T10:46:53,492 already explicitly excluding 'pmx.extensions.xdr' via 2023-05-26T10:46:53,492 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T10:46:53,493 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T10:46:53,493 combination with a more fine grained `package-data` configuration. 2023-05-26T10:46:53,493 You can read more about "package data files" on setuptools documentation page: 2023-05-26T10:46:53,493 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T10:46:53,493 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T10:46:53,494 even if it does not contain any `.py` files. 2023-05-26T10:46:53,494 On the other hand, currently there is no concept of package data 2023-05-26T10:46:53,494 directory, all directories are treated like packages. 2023-05-26T10:46:53,494 ******************************************************************************** 2023-05-26T10:46:53,494 !! 2023-05-26T10:46:53,494 check.warn(importable) 2023-05-26T10:46:53,494 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration. 2023-05-26T10:46:53,494 !! 2023-05-26T10:46:53,495 ******************************************************************************** 2023-05-26T10:46:53,495 ############################ 2023-05-26T10:46:53,495 # Package would be ignored # 2023-05-26T10:46:53,495 ############################ 2023-05-26T10:46:53,495 Python recognizes 'pmx.scripts' as an importable package[^1], 2023-05-26T10:46:53,495 but it is absent from setuptools' `packages` configuration. 2023-05-26T10:46:53,495 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T10:46:53,496 package, please make sure that 'pmx.scripts' is explicitly added 2023-05-26T10:46:53,496 to the `packages` configuration field. 2023-05-26T10:46:53,496 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T10:46:53,496 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T10:46:53,496 instead of `find_packages(...)`/`find:`). 2023-05-26T10:46:53,496 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T10:46:53,497 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T10:46:53,497 If you don't want 'pmx.scripts' to be distributed and are 2023-05-26T10:46:53,497 already explicitly excluding 'pmx.scripts' via 2023-05-26T10:46:53,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T10:46:53,497 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T10:46:53,497 combination with a more fine grained `package-data` configuration. 2023-05-26T10:46:53,497 You can read more about "package data files" on setuptools documentation page: 2023-05-26T10:46:53,498 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T10:46:53,498 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T10:46:53,498 even if it does not contain any `.py` files. 2023-05-26T10:46:53,498 On the other hand, currently there is no concept of package data 2023-05-26T10:46:53,498 directory, all directories are treated like packages. 2023-05-26T10:46:53,498 ******************************************************************************** 2023-05-26T10:46:53,499 !! 2023-05-26T10:46:53,499 check.warn(importable) 2023-05-26T10:46:53,499 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts.icolos_entrypoints' is absent from the `packages` configuration. 2023-05-26T10:46:53,499 !! 2023-05-26T10:46:53,499 ******************************************************************************** 2023-05-26T10:46:53,499 ############################ 2023-05-26T10:46:53,499 # Package would be ignored # 2023-05-26T10:46:53,500 ############################ 2023-05-26T10:46:53,500 Python recognizes 'pmx.scripts.icolos_entrypoints' as an importable package[^1], 2023-05-26T10:46:53,500 but it is absent from setuptools' `packages` configuration. 2023-05-26T10:46:53,500 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T10:46:53,500 package, please make sure that 'pmx.scripts.icolos_entrypoints' is explicitly added 2023-05-26T10:46:53,500 to the `packages` configuration field. 2023-05-26T10:46:53,500 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T10:46:53,501 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T10:46:53,501 instead of `find_packages(...)`/`find:`). 2023-05-26T10:46:53,501 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T10:46:53,501 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T10:46:53,501 If you don't want 'pmx.scripts.icolos_entrypoints' to be distributed and are 2023-05-26T10:46:53,501 already explicitly excluding 'pmx.scripts.icolos_entrypoints' via 2023-05-26T10:46:53,502 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T10:46:53,502 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T10:46:53,502 combination with a more fine grained `package-data` configuration. 2023-05-26T10:46:53,502 You can read more about "package data files" on setuptools documentation page: 2023-05-26T10:46:53,502 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T10:46:53,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T10:46:53,503 even if it does not contain any `.py` files. 2023-05-26T10:46:53,503 On the other hand, currently there is no concept of package data 2023-05-26T10:46:53,503 directory, all directories are treated like packages. 2023-05-26T10:46:53,503 ******************************************************************************** 2023-05-26T10:46:53,503 !! 2023-05-26T10:46:53,503 check.warn(importable) 2023-05-26T10:46:53,508 creating build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T10:46:53,509 copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T10:46:53,517 copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T10:46:53,789 copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T10:46:53,791 copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T10:46:53,796 copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T10:46:53,801 copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T10:46:53,805 copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T10:46:53,809 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T10:46:53,810 copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T10:46:53,812 copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T10:46:53,815 copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T10:46:53,818 copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T10:46:53,822 copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T10:46:53,824 copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T10:46:53,827 copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T10:46:53,829 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,830 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,832 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,835 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,837 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,839 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,843 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,845 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,847 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,852 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,854 copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,857 copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,859 copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,861 copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,863 copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,866 copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,870 copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,872 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,874 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,876 copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,878 copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,881 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,973 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,993 copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,995 copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:53,998 copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,000 copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,002 copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,004 copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,006 copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,008 copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,010 copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,012 copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,014 copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,016 copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:46:54,017 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,018 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,021 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,023 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,025 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,027 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,029 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,031 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,035 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,037 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,040 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,042 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,063 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,065 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,067 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,069 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,071 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,074 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,076 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,080 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,082 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,084 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,086 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,088 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,090 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,144 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,167 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,175 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,182 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,185 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,188 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,191 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,195 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,198 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,201 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,204 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,207 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,210 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,212 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,215 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,218 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,221 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:46:54,224 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,225 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,228 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,232 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,234 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,237 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,239 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,244 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,246 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,249 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,253 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,281 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,284 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,287 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,289 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,292 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,295 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,297 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,301 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,304 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,306 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,309 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,311 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,314 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,378 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,405 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,414 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,420 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,423 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,426 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,428 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,431 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,434 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,438 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,440 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,442 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,445 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,447 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,449 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,451 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,453 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:46:54,455 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,456 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,459 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,461 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,463 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,465 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,467 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,471 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,474 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,476 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,478 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,480 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,482 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,485 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,489 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,491 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,493 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,495 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,497 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,500 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,553 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,574 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,576 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,579 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,581 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,584 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,586 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,589 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,591 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,594 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,596 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,599 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,601 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:46:54,604 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,605 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,607 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,610 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,612 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,615 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,617 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,621 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,623 copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,627 copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,630 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,632 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,635 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,637 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,639 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,642 copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,647 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,651 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,654 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,659 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,662 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,665 copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,667 copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,669 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,671 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,675 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,677 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,728 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,751 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,753 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,755 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,758 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,760 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,762 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,765 copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,767 copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,769 copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,771 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,773 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,775 copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,777 copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,779 copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:46:54,781 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,782 copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,785 copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,789 copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,809 copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,841 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,843 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,845 copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,847 copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,850 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,852 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,854 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,856 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,859 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,861 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,879 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,882 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,884 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,932 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,953 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,959 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,963 copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,966 copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,968 copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,970 copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,972 copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,974 copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:46:54,976 creating build/lib.linux-armv7l-cpython-39/pmx/extensions 2023-05-26T10:46:54,977 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T10:46:54,978 copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T10:46:54,981 copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T10:46:54,984 copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T10:46:54,987 copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T10:46:54,989 copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T10:46:54,991 copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T10:46:54,994 copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T10:46:54,997 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:54,998 copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:55,001 copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:55,004 copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:55,007 copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:55,010 copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:55,013 copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:55,015 copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:55,017 copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T10:46:55,019 creating build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,019 copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,021 copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,024 copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,027 copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,030 copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,032 copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,036 copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,039 copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,042 copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,044 copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,048 copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,051 copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,054 copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,057 copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T10:46:55,060 creating build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-05-26T10:46:55,061 copying src/pmx/scripts/icolos_entrypoints/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-05-26T10:46:55,064 copying src/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-05-26T10:46:55,070 UPDATING build/lib.linux-armv7l-cpython-39/pmx/_version.py 2023-05-26T10:46:55,071 set build/lib.linux-armv7l-cpython-39/pmx/_version.py to '3.0.2' 2023-05-26T10:46:55,071 running build_ext 2023-05-26T10:46:55,077 building 'pmx._pmx' extension 2023-05-26T10:46:55,078 creating build/temp.linux-armv7l-cpython-39 2023-05-26T10:46:55,079 creating build/temp.linux-armv7l-cpython-39/src 2023-05-26T10:46:55,080 creating build/temp.linux-armv7l-cpython-39/src/pmx 2023-05-26T10:46:55,081 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions 2023-05-26T10:46:55,082 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx 2023-05-26T10:46:55,083 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o 2023-05-26T10:46:56,077 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o 2023-05-26T10:46:56,402 src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’: 2023-05-26T10:46:56,402 src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-05-26T10:46:56,403 527 | int nx, ny, nz; 2023-05-26T10:46:56,403 | ^~ 2023-05-26T10:46:56,403 src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’: 2023-05-26T10:46:56,404 src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-05-26T10:46:56,404 586 | int nx, ny, nz; 2023-05-26T10:46:56,404 | ^~ 2023-05-26T10:46:58,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o 2023-05-26T10:46:58,369 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o 2023-05-26T10:46:59,690 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so 2023-05-26T10:46:59,817 building 'pmx._xdrio' extension 2023-05-26T10:46:59,817 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr 2023-05-26T10:46:59,818 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.9 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr/xdrfile.o 2023-05-26T10:46:59,861 src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment] 2023-05-26T10:46:59,861 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-26T10:46:59,861 | 2023-05-26T10:46:59,936 In file included from src/pmx/extensions/xdr/xdrfile.c:60: 2023-05-26T10:46:59,936 src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-26T10:46:59,936 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-26T10:46:59,936 | 2023-05-26T10:46:59,943 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’: 2023-05-26T10:46:59,943 src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T10:46:59,944 499 | while (size >= num && num_of_bits < 32) 2023-05-26T10:46:59,944 | ^~ 2023-05-26T10:46:59,944 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’: 2023-05-26T10:46:59,945 src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T10:46:59,945 545 | while (bytes[num_of_bytes] >= num) 2023-05-26T10:46:59,945 | ^~ 2023-05-26T10:46:59,946 src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’: 2023-05-26T10:46:59,947 src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T10:46:59,947 654 | if (num_of_bits >= num_of_bytes * 8) 2023-05-26T10:46:59,947 | ^~ 2023-05-26T10:46:59,948 src/pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T10:46:59,948 656 | for (i = 0; i < num_of_bytes; i++) 2023-05-26T10:46:59,948 | ^ 2023-05-26T10:46:59,949 src/pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T10:46:59,949 664 | for (i = 0; i < num_of_bytes-1; i++) 2023-05-26T10:46:59,949 | ^ 2023-05-26T10:46:59,950 src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’: 2023-05-26T10:46:59,951 src/pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T10:46:59,951 704 | if (lastbits < num_of_bits) 2023-05-26T10:46:59,951 | ^ 2023-05-26T10:46:59,953 src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-05-26T10:46:59,954 src/pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T10:46:59,954 814 | if(size3>xfp->buf1size) 2023-05-26T10:46:59,954 | ^ 2023-05-26T10:46:59,956 src/pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T10:46:59,956 866 | maxidx = (LASTIDXxfp->buf1size) 2023-05-26T10:46:59,963 | ^ 2023-05-26T10:46:59,968 src/pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T10:46:59,969 1133 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-05-26T10:46:59,969 | ^ 2023-05-26T10:46:59,970 src/pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T10:46:59,970 1139 | maxidx = (LASTIDXxfp->buf1size) 2023-05-26T10:46:59,979 | ^ 2023-05-26T10:46:59,981 src/pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T10:46:59,981 1366 | maxidx = (LASTIDXxfp->buf1size) { 2023-05-26T10:46:59,990 | ^ 2023-05-26T10:46:59,997 src/pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T10:46:59,997 1617 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-05-26T10:46:59,997 | ^ 2023-05-26T10:46:59,998 src/pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T10:46:59,998 1622 | maxidx = (LASTIDX build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,142 creating build/bdist.linux-armv7l/wheel/pmx/extensions 2023-05-26T10:47:03,144 creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T10:47:03,145 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T10:47:03,147 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T10:47:03,149 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T10:47:03,152 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T10:47:03,153 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T10:47:03,156 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T10:47:03,158 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T10:47:03,160 creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,161 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,163 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,165 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,167 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,170 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,174 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,175 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,177 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T10:47:03,179 copying build/lib.linux-armv7l-cpython-39/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,182 copying build/lib.linux-armv7l-cpython-39/pmx/rosetta_analyze.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,184 copying build/lib.linux-armv7l-cpython-39/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,186 copying build/lib.linux-armv7l-cpython-39/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,189 copying build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,194 copying build/lib.linux-armv7l-cpython-39/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,196 copying build/lib.linux-armv7l-cpython-39/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,199 copying build/lib.linux-armv7l-cpython-39/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,201 copying build/lib.linux-armv7l-cpython-39/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,203 copying build/lib.linux-armv7l-cpython-39/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,205 copying build/lib.linux-armv7l-cpython-39/pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,210 copying build/lib.linux-armv7l-cpython-39/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:03,212 creating build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T10:47:03,213 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T10:47:03,218 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T10:47:03,224 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T10:47:03,229 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T10:47:03,230 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T10:47:03,233 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,234 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,239 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,241 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,243 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,245 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,247 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,249 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,277 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,318 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,320 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,339 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,341 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,343 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,344 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,346 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,348 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,349 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,351 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,353 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,356 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,359 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,360 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,362 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,364 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,366 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,368 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,373 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,375 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,377 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,379 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,382 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,384 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,385 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,394 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,396 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,397 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,399 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,401 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,403 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,404 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,406 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T10:47:03,409 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,410 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,412 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,414 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,416 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,418 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,420 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,448 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,499 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,501 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,502 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,504 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,506 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,507 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,509 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,510 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,512 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,514 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,517 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,518 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,520 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,523 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,526 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,530 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,532 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,534 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,536 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,538 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,540 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,542 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,545 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,547 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,550 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T10:47:03,553 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T10:47:03,556 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,557 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,563 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,566 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,568 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,599 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,602 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,620 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,677 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,679 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,681 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,686 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,688 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,690 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,717 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,719 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,722 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,724 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,726 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,728 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,730 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,732 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,751 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,753 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,756 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,763 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,766 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T10:47:03,768 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T10:47:03,771 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T10:47:03,774 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T10:47:03,778 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,779 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,782 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,784 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,787 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,790 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,792 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,797 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,823 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,876 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,878 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,881 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,883 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,886 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,887 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,890 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,892 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,894 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,896 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,898 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,901 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,903 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,905 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,906 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,908 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,910 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,912 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,914 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,917 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,919 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,920 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,922 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,924 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,925 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,927 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,929 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,930 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,932 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,934 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,937 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,939 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,941 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T10:47:03,945 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:03,946 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:03,948 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:03,951 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:03,954 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:03,956 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:03,958 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:03,961 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:03,981 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,034 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,037 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,039 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,041 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,044 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,046 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,048 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,051 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,052 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,055 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,059 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,061 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,063 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,065 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,068 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,072 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,075 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,077 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,079 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,081 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,083 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,084 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,086 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,087 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,089 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,091 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T10:47:04,094 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T10:47:04,096 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,097 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,102 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,104 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,105 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,108 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,110 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,112 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,131 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,185 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,188 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,208 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,210 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,212 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,214 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,216 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,218 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,220 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,222 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,225 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,228 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,230 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,232 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,234 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,236 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,238 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,241 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,245 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,248 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,250 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,253 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,256 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,257 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,259 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,267 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,269 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,270 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,273 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,274 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,276 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,278 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T10:47:04,281 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T10:47:04,282 copying build/lib.linux-armv7l-cpython-39/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T10:47:04,284 copying build/lib.linux-armv7l-cpython-39/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T10:47:04,287 copying build/lib.linux-armv7l-cpython-39/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T10:47:04,535 copying build/lib.linux-armv7l-cpython-39/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T10:47:04,541 copying build/lib.linux-armv7l-cpython-39/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,545 creating build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,546 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,548 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,551 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,554 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,555 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,558 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,560 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,562 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,563 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,566 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,568 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,570 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,573 creating build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-05-26T10:47:04,574 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-05-26T10:47:04,577 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-05-26T10:47:04,578 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,581 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T10:47:04,583 copying build/lib.linux-armv7l-cpython-39/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,586 copying build/lib.linux-armv7l-cpython-39/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,588 copying build/lib.linux-armv7l-cpython-39/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,589 copying build/lib.linux-armv7l-cpython-39/pmx/atom.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,592 copying build/lib.linux-armv7l-cpython-39/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,596 copying build/lib.linux-armv7l-cpython-39/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,599 copying build/lib.linux-armv7l-cpython-39/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,604 copying build/lib.linux-armv7l-cpython-39/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,607 copying build/lib.linux-armv7l-cpython-39/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,609 copying build/lib.linux-armv7l-cpython-39/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,613 copying build/lib.linux-armv7l-cpython-39/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,616 copying build/lib.linux-armv7l-cpython-39/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,619 copying build/lib.linux-armv7l-cpython-39/pmx/utils.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,621 copying build/lib.linux-armv7l-cpython-39/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,623 copying build/lib.linux-armv7l-cpython-39/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,625 copying build/lib.linux-armv7l-cpython-39/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T10:47:04,627 running install_egg_info 2023-05-26T10:47:04,656 Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-3.0.2-py3.9.egg-info 2023-05-26T10:47:04,672 running install_scripts 2023-05-26T10:47:04,689 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-05-26T10:47:04,694 creating build/bdist.linux-armv7l/wheel/pmx_biobb-3.0.2.dist-info/WHEEL 2023-05-26T10:47:04,697 creating '/tmp/pip-wheel-g0jiiw_o/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-26T10:47:04,700 adding 'pmx/__init__.py' 2023-05-26T10:47:04,738 adding 'pmx/_pmx.cpython-39-arm-linux-gnueabihf.so' 2023-05-26T10:47:04,741 adding 'pmx/_version.py' 2023-05-26T10:47:04,768 adding 'pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so' 2023-05-26T10:47:04,776 adding 'pmx/alchemy.py' 2023-05-26T10:47:04,779 adding 'pmx/analysis.py' 2023-05-26T10:47:04,781 adding 'pmx/atom.py' 2023-05-26T10:47:04,783 adding 'pmx/atomselection.py' 2023-05-26T10:47:04,786 adding 'pmx/builder.py' 2023-05-26T10:47:04,789 adding 'pmx/chain.py' 2023-05-26T10:47:04,793 adding 'pmx/estimators.py' 2023-05-26T10:47:04,796 adding 'pmx/ffparser.py' 2023-05-26T10:47:04,805 adding 'pmx/forcefield.py' 2023-05-26T10:47:04,808 adding 'pmx/geometry.py' 2023-05-26T10:47:04,810 adding 'pmx/gmx.py' 2023-05-26T10:47:04,811 adding 'pmx/jobscript.py' 2023-05-26T10:47:04,820 adding 'pmx/library.py' 2023-05-26T10:47:04,833 adding 'pmx/ligand_alchemy.py' 2023-05-26T10:47:04,839 adding 'pmx/model.py' 2023-05-26T10:47:04,842 adding 'pmx/molecule.py' 2023-05-26T10:47:04,845 adding 'pmx/mutdb.py' 2023-05-26T10:47:04,847 adding 'pmx/ndx.py' 2023-05-26T10:47:04,849 adding 'pmx/options.py' 2023-05-26T10:47:04,851 adding 'pmx/parser.py' 2023-05-26T10:47:04,854 adding 'pmx/rosetta.py' 2023-05-26T10:47:04,856 adding 'pmx/rosetta_analyze.py' 2023-05-26T10:47:04,858 adding 'pmx/rotamer.py' 2023-05-26T10:47:04,861 adding 'pmx/utils.py' 2023-05-26T10:47:04,863 adding 'pmx/xdrfile.py' 2023-05-26T10:47:04,864 adding 'pmx/xtc.py' 2023-05-26T10:47:04,891 adding 'pmx/data/aminoacids.pkl' 2023-05-26T10:47:06,736 adding 'pmx/data/bbdep.pkl' 2023-05-26T10:47:06,846 adding 'pmx/data/blosum62_new.mat' 2023-05-26T10:47:06,861 adding 'pmx/data/bp.pkl' 2023-05-26T10:47:06,881 adding 'pmx/data/bp_amber.pkl' 2023-05-26T10:47:06,902 adding 'pmx/data/bp_charmm.pkl' 2023-05-26T10:47:06,912 adding 'pmx/data/rna.pkl' 2023-05-26T10:47:06,915 adding 'pmx/data/mutff/atommass.dat' 2023-05-26T10:47:06,916 adding 'pmx/data/mutff/elements.dat' 2023-05-26T10:47:06,918 adding 'pmx/data/mutff/residuetypes.dat' 2023-05-26T10:47:06,925 adding 'pmx/data/mutff/spc216.gro' 2023-05-26T10:47:06,927 adding 'pmx/data/mutff/specbond.dat' 2023-05-26T10:47:06,928 adding 'pmx/data/mutff/vdwradii.dat' 2023-05-26T10:47:06,930 adding 'pmx/data/mutff/xlateat.dat' 2023-05-26T10:47:06,932 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am' 2023-05-26T10:47:06,934 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in' 2023-05-26T10:47:06,936 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn' 2023-05-26T10:47:06,938 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb' 2023-05-26T10:47:06,940 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb' 2023-05-26T10:47:06,941 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb' 2023-05-26T10:47:06,942 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b' 2023-05-26T10:47:06,949 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp' 2023-05-26T10:47:06,951 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd' 2023-05-26T10:47:06,953 adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp' 2023-05-26T10:47:06,955 adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn' 2023-05-26T10:47:06,956 adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb' 2023-05-26T10:47:06,957 adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b' 2023-05-26T10:47:06,960 adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp' 2023-05-26T10:47:06,967 adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp' 2023-05-26T10:47:06,969 adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp' 2023-05-26T10:47:06,971 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc' 2023-05-26T10:47:06,972 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp' 2023-05-26T10:47:06,973 adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp' 2023-05-26T10:47:06,974 adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp' 2023-05-26T10:47:07,157 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp' 2023-05-26T10:47:07,243 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp' 2023-05-26T10:47:07,252 adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn' 2023-05-26T10:47:07,253 adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb' 2023-05-26T10:47:07,254 adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b' 2023-05-26T10:47:07,256 adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp' 2023-05-26T10:47:07,258 adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp' 2023-05-26T10:47:07,259 adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp' 2023-05-26T10:47:07,260 adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp' 2023-05-26T10:47:07,262 adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp' 2023-05-26T10:47:07,263 adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp' 2023-05-26T10:47:07,264 adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp' 2023-05-26T10:47:07,265 adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp' 2023-05-26T10:47:07,266 adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat' 2023-05-26T10:47:07,271 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn' 2023-05-26T10:47:07,272 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup' 2023-05-26T10:47:07,273 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb' 2023-05-26T10:47:07,275 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb' 2023-05-26T10:47:07,276 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb' 2023-05-26T10:47:07,277 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b' 2023-05-26T10:47:07,285 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp' 2023-05-26T10:47:07,288 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd' 2023-05-26T10:47:07,290 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp' 2023-05-26T10:47:07,294 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-05-26T10:47:07,356 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres' 2023-05-26T10:47:07,368 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp' 2023-05-26T10:47:07,369 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn' 2023-05-26T10:47:07,370 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb' 2023-05-26T10:47:07,371 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b' 2023-05-26T10:47:07,374 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp' 2023-05-26T10:47:07,376 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp' 2023-05-26T10:47:07,381 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp' 2023-05-26T10:47:07,383 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp' 2023-05-26T10:47:07,384 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc' 2023-05-26T10:47:07,385 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp' 2023-05-26T10:47:07,387 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp' 2023-05-26T10:47:07,388 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp' 2023-05-26T10:47:07,547 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp' 2023-05-26T10:47:07,626 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp' 2023-05-26T10:47:07,652 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp' 2023-05-26T10:47:07,661 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp' 2023-05-26T10:47:07,665 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp' 2023-05-26T10:47:07,667 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp' 2023-05-26T10:47:07,668 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn' 2023-05-26T10:47:07,670 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb' 2023-05-26T10:47:07,671 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b' 2023-05-26T10:47:07,673 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp' 2023-05-26T10:47:07,675 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp' 2023-05-26T10:47:07,676 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp' 2023-05-26T10:47:07,677 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp' 2023-05-26T10:47:07,678 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp' 2023-05-26T10:47:07,680 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp' 2023-05-26T10:47:07,681 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp' 2023-05-26T10:47:07,682 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp' 2023-05-26T10:47:07,683 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat' 2023-05-26T10:47:07,686 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn' 2023-05-26T10:47:07,687 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb' 2023-05-26T10:47:07,688 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb' 2023-05-26T10:47:07,689 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb' 2023-05-26T10:47:07,690 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b' 2023-05-26T10:47:07,699 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp' 2023-05-26T10:47:07,702 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd' 2023-05-26T10:47:07,703 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp' 2023-05-26T10:47:07,707 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-05-26T10:47:07,770 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres' 2023-05-26T10:47:07,858 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp' 2023-05-26T10:47:07,952 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn' 2023-05-26T10:47:07,953 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb' 2023-05-26T10:47:07,955 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b' 2023-05-26T10:47:07,957 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp' 2023-05-26T10:47:07,959 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp' 2023-05-26T10:47:07,964 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp' 2023-05-26T10:47:07,966 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp' 2023-05-26T10:47:07,967 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc' 2023-05-26T10:47:07,968 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp' 2023-05-26T10:47:07,969 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp' 2023-05-26T10:47:07,971 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp' 2023-05-26T10:47:08,129 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp' 2023-05-26T10:47:08,297 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp' 2023-05-26T10:47:08,330 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp' 2023-05-26T10:47:08,340 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp' 2023-05-26T10:47:08,376 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp' 2023-05-26T10:47:08,378 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp' 2023-05-26T10:47:08,380 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn' 2023-05-26T10:47:08,381 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb' 2023-05-26T10:47:08,382 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b' 2023-05-26T10:47:08,385 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp' 2023-05-26T10:47:08,386 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp' 2023-05-26T10:47:08,387 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp' 2023-05-26T10:47:08,389 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp' 2023-05-26T10:47:08,390 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp' 2023-05-26T10:47:08,391 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp' 2023-05-26T10:47:08,393 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp' 2023-05-26T10:47:08,394 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp' 2023-05-26T10:47:08,395 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat' 2023-05-26T10:47:08,398 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn' 2023-05-26T10:47:08,427 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-05-26T10:47:08,429 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-05-26T10:47:08,476 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-05-26T10:47:08,478 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-05-26T10:47:08,486 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp' 2023-05-26T10:47:08,571 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-05-26T10:47:08,573 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp' 2023-05-26T10:47:08,574 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn' 2023-05-26T10:47:08,575 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-05-26T10:47:08,576 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-05-26T10:47:08,579 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-05-26T10:47:08,583 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp' 2023-05-26T10:47:08,585 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp' 2023-05-26T10:47:08,749 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc' 2023-05-26T10:47:08,794 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-05-26T10:47:08,890 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-05-26T10:47:08,893 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp' 2023-05-26T10:47:09,141 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp' 2023-05-26T10:47:09,431 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp' 2023-05-26T10:47:09,464 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn' 2023-05-26T10:47:09,465 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-05-26T10:47:09,466 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-05-26T10:47:09,469 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-05-26T10:47:09,470 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp' 2023-05-26T10:47:09,471 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp' 2023-05-26T10:47:09,473 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-05-26T10:47:09,474 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-05-26T10:47:09,475 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-05-26T10:47:09,477 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-05-26T10:47:09,478 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp' 2023-05-26T10:47:09,479 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-05-26T10:47:09,481 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn' 2023-05-26T10:47:09,482 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb' 2023-05-26T10:47:09,484 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb' 2023-05-26T10:47:09,485 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb' 2023-05-26T10:47:09,486 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b' 2023-05-26T10:47:09,490 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp' 2023-05-26T10:47:09,492 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd' 2023-05-26T10:47:09,494 adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp' 2023-05-26T10:47:09,499 adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp' 2023-05-26T10:47:09,501 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn' 2023-05-26T10:47:09,502 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb' 2023-05-26T10:47:09,552 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb' 2023-05-26T10:47:09,553 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb' 2023-05-26T10:47:09,555 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp' 2023-05-26T10:47:09,563 adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp' 2023-05-26T10:47:09,570 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp' 2023-05-26T10:47:09,575 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp' 2023-05-26T10:47:09,587 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp' 2023-05-26T10:47:09,589 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc' 2023-05-26T10:47:09,590 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp' 2023-05-26T10:47:09,592 adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp' 2023-05-26T10:47:09,593 adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp' 2023-05-26T10:47:09,594 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb' 2023-05-26T10:47:09,598 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp' 2023-05-26T10:47:09,600 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn' 2023-05-26T10:47:09,753 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp' 2023-05-26T10:47:09,830 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp' 2023-05-26T10:47:09,838 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn' 2023-05-26T10:47:09,839 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb' 2023-05-26T10:47:09,841 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb' 2023-05-26T10:47:09,842 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb' 2023-05-26T10:47:09,843 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b' 2023-05-26T10:47:09,845 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp' 2023-05-26T10:47:09,847 adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp' 2023-05-26T10:47:09,848 adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp' 2023-05-26T10:47:09,849 adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp' 2023-05-26T10:47:09,850 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp' 2023-05-26T10:47:09,852 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp' 2023-05-26T10:47:09,853 adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp' 2023-05-26T10:47:09,854 adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp' 2023-05-26T10:47:09,856 adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat' 2023-05-26T10:47:09,860 adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp' 2023-05-26T10:47:09,873 adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp' 2023-05-26T10:47:09,975 adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp' 2023-05-26T10:47:10,105 adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp' 2023-05-26T10:47:10,117 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc' 2023-05-26T10:47:10,118 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp' 2023-05-26T10:47:10,119 adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp' 2023-05-26T10:47:10,120 adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp' 2023-05-26T10:47:10,121 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn' 2023-05-26T10:47:10,123 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb' 2023-05-26T10:47:10,124 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb' 2023-05-26T10:47:10,126 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb' 2023-05-26T10:47:10,127 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b' 2023-05-26T10:47:10,265 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp' 2023-05-26T10:47:10,273 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd' 2023-05-26T10:47:10,275 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn' 2023-05-26T10:47:10,442 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp' 2023-05-26T10:47:10,525 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp' 2023-05-26T10:47:10,550 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp' 2023-05-26T10:47:10,559 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp' 2023-05-26T10:47:10,561 adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp' 2023-05-26T10:47:10,563 adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp' 2023-05-26T10:47:10,564 adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp' 2023-05-26T10:47:10,565 adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp' 2023-05-26T10:47:10,566 adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp' 2023-05-26T10:47:10,568 adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat' 2023-05-26T10:47:10,570 adding 'pmx/extensions/pmx/Energy.c' 2023-05-26T10:47:10,573 adding 'pmx/extensions/pmx/Geometry.c' 2023-05-26T10:47:10,576 adding 'pmx/extensions/pmx/Geometry.h' 2023-05-26T10:47:10,577 adding 'pmx/extensions/pmx/cpp_test.cpp' 2023-05-26T10:47:10,578 adding 'pmx/extensions/pmx/init.c' 2023-05-26T10:47:10,580 adding 'pmx/extensions/pmx/pmx.h' 2023-05-26T10:47:10,582 adding 'pmx/extensions/pmx/wrap_Geometry.c' 2023-05-26T10:47:10,585 adding 'pmx/extensions/xdr/trr2xtc.c' 2023-05-26T10:47:10,591 adding 'pmx/extensions/xdr/xdrfile.c' 2023-05-26T10:47:10,594 adding 'pmx/extensions/xdr/xdrfile.h' 2023-05-26T10:47:10,597 adding 'pmx/extensions/xdr/xdrfile_c_test.c' 2023-05-26T10:47:10,599 adding 'pmx/extensions/xdr/xdrfile_trr.c' 2023-05-26T10:47:10,600 adding 'pmx/extensions/xdr/xdrfile_trr.h' 2023-05-26T10:47:10,601 adding 'pmx/extensions/xdr/xdrfile_xtc.c' 2023-05-26T10:47:10,603 adding 'pmx/extensions/xdr/xdrfile_xtc.h' 2023-05-26T10:47:10,605 adding 'pmx/scripts/__init__.py' 2023-05-26T10:47:10,608 adding 'pmx/scripts/analyze_dhdl.py' 2023-05-26T10:47:10,610 adding 'pmx/scripts/atomMapping.py' 2023-05-26T10:47:10,612 adding 'pmx/scripts/build_cyclic_top.py' 2023-05-26T10:47:10,614 adding 'pmx/scripts/cli.py' 2023-05-26T10:47:10,621 adding 'pmx/scripts/generate_hybrid_residue.py' 2023-05-26T10:47:10,623 adding 'pmx/scripts/generate_hybrid_topology.py' 2023-05-26T10:47:10,625 adding 'pmx/scripts/ligandHybrid.py' 2023-05-26T10:47:10,626 adding 'pmx/scripts/make_double_box.py' 2023-05-26T10:47:10,629 adding 'pmx/scripts/md_setup.py' 2023-05-26T10:47:10,632 adding 'pmx/scripts/mutate.py' 2023-05-26T10:47:10,634 adding 'pmx/scripts/prepare_crooks_runs.py' 2023-05-26T10:47:10,635 adding 'pmx/scripts/set_gmxlib.py' 2023-05-26T10:47:10,638 adding 'pmx/scripts/setup_abfe.py' 2023-05-26T10:47:10,640 adding 'pmx/scripts/icolos_entrypoints/__init__.py' 2023-05-26T10:47:10,641 adding 'pmx/scripts/icolos_entrypoints/assemble_systems.py' 2023-05-26T10:47:10,644 adding 'pmx_biobb-3.0.2.dist-info/LICENSE' 2023-05-26T10:47:10,646 adding 'pmx_biobb-3.0.2.dist-info/METADATA' 2023-05-26T10:47:10,647 adding 'pmx_biobb-3.0.2.dist-info/WHEEL' 2023-05-26T10:47:10,648 adding 'pmx_biobb-3.0.2.dist-info/entry_points.txt' 2023-05-26T10:47:10,649 adding 'pmx_biobb-3.0.2.dist-info/top_level.txt' 2023-05-26T10:47:10,653 adding 'pmx_biobb-3.0.2.dist-info/RECORD' 2023-05-26T10:47:10,719 removing build/bdist.linux-armv7l/wheel 2023-05-26T10:47:10,896 Building wheel for pmx-biobb (setup.py): finished with status 'done' 2023-05-26T10:47:10,956 Created wheel for pmx-biobb: filename=pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl size=5907762 sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 2023-05-26T10:47:10,958 Stored in directory: /tmp/pip-ephem-wheel-cache-aeb7fxrc/wheels/db/c7/63/ce87b89f70154c3620a46975d3f030155bb9c0ce14bc745c95 2023-05-26T10:47:10,979 Successfully built pmx-biobb 2023-05-26T10:47:11,175 Removed build tracker: '/tmp/pip-build-tracker-m_jidb3b'