2023-05-26T11:13:52,765 Created temporary directory: /tmp/pip-build-tracker-s7mefgwy 2023-05-26T11:13:52,766 Initialized build tracking at /tmp/pip-build-tracker-s7mefgwy 2023-05-26T11:13:52,766 Created build tracker: /tmp/pip-build-tracker-s7mefgwy 2023-05-26T11:13:52,766 Entered build tracker: /tmp/pip-build-tracker-s7mefgwy 2023-05-26T11:13:52,767 Created temporary directory: /tmp/pip-wheel-ovh7yt4u 2023-05-26T11:13:52,770 Created temporary directory: /tmp/pip-ephem-wheel-cache-n1jchb_4 2023-05-26T11:13:52,797 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-26T11:13:52,800 2 location(s) to search for versions of pmx-biobb: 2023-05-26T11:13:52,800 * https://pypi.org/simple/pmx-biobb/ 2023-05-26T11:13:52,800 * https://www.piwheels.org/simple/pmx-biobb/ 2023-05-26T11:13:52,801 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/ 2023-05-26T11:13:52,801 Getting page https://pypi.org/simple/pmx-biobb/ 2023-05-26T11:13:52,803 Found index url https://pypi.org/simple/ 2023-05-26T11:13:52,858 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json 2023-05-26T11:13:52,861 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:52,862 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:52,862 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:52,862 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:52,863 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:52,863 Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:52,863 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:52,864 Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0 2023-05-26T11:13:52,864 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:52,864 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:52,865 Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1 2023-05-26T11:13:52,865 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:52,865 Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2 2023-05-26T11:13:52,866 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:52,866 Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3 2023-05-26T11:13:52,867 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/ 2023-05-26T11:13:52,867 Getting page https://www.piwheels.org/simple/pmx-biobb/ 2023-05-26T11:13:52,868 Found index url https://www.piwheels.org/simple/ 2023-05-26T11:13:53,030 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html 2023-05-26T11:13:53,036 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,037 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,037 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,037 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,037 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,038 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,038 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,038 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,038 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,038 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,039 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,039 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,039 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,039 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-05-26T11:13:53,039 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:53,040 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:53,040 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:53,040 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-05-26T11:13:53,040 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/ 2023-05-26T11:13:53,040 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/ 2023-05-26T11:13:53,058 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates 2023-05-26T11:13:53,075 Collecting pmx-biobb==3.0.3 2023-05-26T11:13:53,077 Created temporary directory: /tmp/pip-unpack-ampwp7lg 2023-05-26T11:13:53,126 Downloading pmx_biobb-3.0.3.tar.gz (5.3 MB) 2023-05-26T11:13:55,608 Added pmx-biobb==3.0.3 from https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-s7mefgwy' 2023-05-26T11:13:55,611 Running setup.py (path:/tmp/pip-wheel-ovh7yt4u/pmx-biobb_6c6f893f539f49f9be50b1a9c0961491/setup.py) egg_info for package pmx-biobb 2023-05-26T11:13:55,611 Created temporary directory: /tmp/pip-pip-egg-info-dil7mn54 2023-05-26T11:13:55,612 Preparing metadata (setup.py): started 2023-05-26T11:13:55,612 Running command python setup.py egg_info 2023-05-26T11:13:56,251 running egg_info 2023-05-26T11:13:56,253 creating /tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info 2023-05-26T11:13:56,276 writing /tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info/PKG-INFO 2023-05-26T11:13:56,279 writing dependency_links to /tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info/dependency_links.txt 2023-05-26T11:13:56,280 writing entry points to /tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info/entry_points.txt 2023-05-26T11:13:56,282 writing requirements to /tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info/requires.txt 2023-05-26T11:13:56,283 writing top-level names to /tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info/top_level.txt 2023-05-26T11:13:56,285 writing manifest file '/tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T11:13:56,537 reading manifest file '/tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T11:13:56,539 reading manifest template 'MANIFEST.in' 2023-05-26T11:13:56,567 adding license file 'LICENSE' 2023-05-26T11:13:56,580 writing manifest file '/tmp/pip-pip-egg-info-dil7mn54/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T11:13:56,651 Preparing metadata (setup.py): finished with status 'done' 2023-05-26T11:13:56,656 Source in /tmp/pip-wheel-ovh7yt4u/pmx-biobb_6c6f893f539f49f9be50b1a9c0961491 has version 3.0.3, which satisfies requirement pmx-biobb==3.0.3 from https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz 2023-05-26T11:13:56,657 Removed pmx-biobb==3.0.3 from https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-s7mefgwy' 2023-05-26T11:13:56,664 Created temporary directory: /tmp/pip-unpack-qnyfxj78 2023-05-26T11:13:56,664 Building wheels for collected packages: pmx-biobb 2023-05-26T11:13:56,668 Created temporary directory: /tmp/pip-wheel-e_8o0g39 2023-05-26T11:13:56,668 Building wheel for pmx-biobb (setup.py): started 2023-05-26T11:13:56,669 Destination directory: /tmp/pip-wheel-e_8o0g39 2023-05-26T11:13:56,670 Running command python setup.py bdist_wheel 2023-05-26T11:13:57,511 running bdist_wheel 2023-05-26T11:13:57,781 running build 2023-05-26T11:13:57,781 running build_py 2023-05-26T11:13:57,785 creating build 2023-05-26T11:13:57,786 creating build/lib.linux-armv7l-cpython-39 2023-05-26T11:13:57,787 creating build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,788 copying src/pmx/rosetta.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,790 copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,793 copying src/pmx/rosetta_analyze.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,795 copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,797 copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,799 copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,802 copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,804 copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,806 copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,807 copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,809 copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,811 copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,814 copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,817 copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,818 copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,820 copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,822 copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,825 copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,827 copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,831 copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,834 copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,835 copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,839 copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,842 copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,844 copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,846 copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,848 copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,850 copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-05-26T11:13:57,852 running egg_info 2023-05-26T11:13:57,908 writing src/pmx_biobb.egg-info/PKG-INFO 2023-05-26T11:13:57,910 writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt 2023-05-26T11:13:57,912 writing entry points to src/pmx_biobb.egg-info/entry_points.txt 2023-05-26T11:13:57,913 writing requirements to src/pmx_biobb.egg-info/requires.txt 2023-05-26T11:13:57,914 writing top-level names to src/pmx_biobb.egg-info/top_level.txt 2023-05-26T11:13:57,943 reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T11:13:57,952 reading manifest template 'MANIFEST.in' 2023-05-26T11:13:57,968 adding license file 'LICENSE' 2023-05-26T11:13:57,985 writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-05-26T11:13:57,989 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data' is absent from the `packages` configuration. 2023-05-26T11:13:57,989 !! 2023-05-26T11:13:57,989 ******************************************************************************** 2023-05-26T11:13:57,990 ############################ 2023-05-26T11:13:57,990 # Package would be ignored # 2023-05-26T11:13:57,990 ############################ 2023-05-26T11:13:57,990 Python recognizes 'pmx.data' as an importable package[^1], 2023-05-26T11:13:57,990 but it is absent from setuptools' `packages` configuration. 2023-05-26T11:13:57,990 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T11:13:57,990 package, please make sure that 'pmx.data' is explicitly added 2023-05-26T11:13:57,991 to the `packages` configuration field. 2023-05-26T11:13:57,991 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T11:13:57,991 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T11:13:57,991 instead of `find_packages(...)`/`find:`). 2023-05-26T11:13:57,991 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T11:13:57,991 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T11:13:57,992 If you don't want 'pmx.data' to be distributed and are 2023-05-26T11:13:57,992 already explicitly excluding 'pmx.data' via 2023-05-26T11:13:57,992 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T11:13:57,992 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T11:13:57,992 combination with a more fine grained `package-data` configuration. 2023-05-26T11:13:57,992 You can read more about "package data files" on setuptools documentation page: 2023-05-26T11:13:57,993 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T11:13:57,993 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T11:13:57,993 even if it does not contain any `.py` files. 2023-05-26T11:13:57,993 On the other hand, currently there is no concept of package data 2023-05-26T11:13:57,993 directory, all directories are treated like packages. 2023-05-26T11:13:57,993 ******************************************************************************** 2023-05-26T11:13:57,994 !! 2023-05-26T11:13:57,994 check.warn(importable) 2023-05-26T11:13:57,994 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration. 2023-05-26T11:13:57,994 !! 2023-05-26T11:13:57,994 ******************************************************************************** 2023-05-26T11:13:57,994 ############################ 2023-05-26T11:13:57,994 # Package would be ignored # 2023-05-26T11:13:57,995 ############################ 2023-05-26T11:13:57,995 Python recognizes 'pmx.data.mutff' as an importable package[^1], 2023-05-26T11:13:57,995 but it is absent from setuptools' `packages` configuration. 2023-05-26T11:13:57,995 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T11:13:57,995 package, please make sure that 'pmx.data.mutff' is explicitly added 2023-05-26T11:13:57,995 to the `packages` configuration field. 2023-05-26T11:13:57,995 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T11:13:57,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T11:13:57,996 instead of `find_packages(...)`/`find:`). 2023-05-26T11:13:57,996 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T11:13:57,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T11:13:57,996 If you don't want 'pmx.data.mutff' to be distributed and are 2023-05-26T11:13:57,996 already explicitly excluding 'pmx.data.mutff' via 2023-05-26T11:13:57,997 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T11:13:57,997 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T11:13:57,997 combination with a more fine grained `package-data` configuration. 2023-05-26T11:13:57,997 You can read more about "package data files" on setuptools documentation page: 2023-05-26T11:13:57,997 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T11:13:57,998 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T11:13:57,998 even if it does not contain any `.py` files. 2023-05-26T11:13:57,998 On the other hand, currently there is no concept of package data 2023-05-26T11:13:57,998 directory, all directories are treated like packages. 2023-05-26T11:13:57,998 ******************************************************************************** 2023-05-26T11:13:57,998 !! 2023-05-26T11:13:57,998 check.warn(importable) 2023-05-26T11:13:58,010 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration. 2023-05-26T11:13:58,010 !! 2023-05-26T11:13:58,011 ******************************************************************************** 2023-05-26T11:13:58,011 ############################ 2023-05-26T11:13:58,011 # Package would be ignored # 2023-05-26T11:13:58,011 ############################ 2023-05-26T11:13:58,011 Python recognizes 'pmx.extensions.pmx' as an importable package[^1], 2023-05-26T11:13:58,011 but it is absent from setuptools' `packages` configuration. 2023-05-26T11:13:58,012 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T11:13:58,012 package, please make sure that 'pmx.extensions.pmx' is explicitly added 2023-05-26T11:13:58,012 to the `packages` configuration field. 2023-05-26T11:13:58,012 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T11:13:58,012 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T11:13:58,012 instead of `find_packages(...)`/`find:`). 2023-05-26T11:13:58,012 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T11:13:58,013 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T11:13:58,013 If you don't want 'pmx.extensions.pmx' to be distributed and are 2023-05-26T11:13:58,013 already explicitly excluding 'pmx.extensions.pmx' via 2023-05-26T11:13:58,013 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T11:13:58,013 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T11:13:58,013 combination with a more fine grained `package-data` configuration. 2023-05-26T11:13:58,014 You can read more about "package data files" on setuptools documentation page: 2023-05-26T11:13:58,014 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T11:13:58,014 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T11:13:58,014 even if it does not contain any `.py` files. 2023-05-26T11:13:58,014 On the other hand, currently there is no concept of package data 2023-05-26T11:13:58,015 directory, all directories are treated like packages. 2023-05-26T11:13:58,015 ******************************************************************************** 2023-05-26T11:13:58,015 !! 2023-05-26T11:13:58,015 check.warn(importable) 2023-05-26T11:13:58,015 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration. 2023-05-26T11:13:58,015 !! 2023-05-26T11:13:58,015 ******************************************************************************** 2023-05-26T11:13:58,016 ############################ 2023-05-26T11:13:58,016 # Package would be ignored # 2023-05-26T11:13:58,016 ############################ 2023-05-26T11:13:58,016 Python recognizes 'pmx.extensions.xdr' as an importable package[^1], 2023-05-26T11:13:58,016 but it is absent from setuptools' `packages` configuration. 2023-05-26T11:13:58,016 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T11:13:58,016 package, please make sure that 'pmx.extensions.xdr' is explicitly added 2023-05-26T11:13:58,016 to the `packages` configuration field. 2023-05-26T11:13:58,017 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T11:13:58,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T11:13:58,017 instead of `find_packages(...)`/`find:`). 2023-05-26T11:13:58,017 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T11:13:58,017 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T11:13:58,018 If you don't want 'pmx.extensions.xdr' to be distributed and are 2023-05-26T11:13:58,018 already explicitly excluding 'pmx.extensions.xdr' via 2023-05-26T11:13:58,018 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T11:13:58,018 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T11:13:58,018 combination with a more fine grained `package-data` configuration. 2023-05-26T11:13:58,018 You can read more about "package data files" on setuptools documentation page: 2023-05-26T11:13:58,019 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T11:13:58,019 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T11:13:58,019 even if it does not contain any `.py` files. 2023-05-26T11:13:58,019 On the other hand, currently there is no concept of package data 2023-05-26T11:13:58,019 directory, all directories are treated like packages. 2023-05-26T11:13:58,019 ******************************************************************************** 2023-05-26T11:13:58,020 !! 2023-05-26T11:13:58,020 check.warn(importable) 2023-05-26T11:13:58,020 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration. 2023-05-26T11:13:58,020 !! 2023-05-26T11:13:58,020 ******************************************************************************** 2023-05-26T11:13:58,020 ############################ 2023-05-26T11:13:58,020 # Package would be ignored # 2023-05-26T11:13:58,020 ############################ 2023-05-26T11:13:58,021 Python recognizes 'pmx.scripts' as an importable package[^1], 2023-05-26T11:13:58,021 but it is absent from setuptools' `packages` configuration. 2023-05-26T11:13:58,021 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T11:13:58,021 package, please make sure that 'pmx.scripts' is explicitly added 2023-05-26T11:13:58,021 to the `packages` configuration field. 2023-05-26T11:13:58,021 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T11:13:58,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T11:13:58,021 instead of `find_packages(...)`/`find:`). 2023-05-26T11:13:58,022 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T11:13:58,022 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T11:13:58,022 If you don't want 'pmx.scripts' to be distributed and are 2023-05-26T11:13:58,022 already explicitly excluding 'pmx.scripts' via 2023-05-26T11:13:58,022 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T11:13:58,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T11:13:58,023 combination with a more fine grained `package-data` configuration. 2023-05-26T11:13:58,023 You can read more about "package data files" on setuptools documentation page: 2023-05-26T11:13:58,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T11:13:58,023 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T11:13:58,023 even if it does not contain any `.py` files. 2023-05-26T11:13:58,024 On the other hand, currently there is no concept of package data 2023-05-26T11:13:58,024 directory, all directories are treated like packages. 2023-05-26T11:13:58,024 ******************************************************************************** 2023-05-26T11:13:58,024 !! 2023-05-26T11:13:58,024 check.warn(importable) 2023-05-26T11:13:58,024 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts.icolos_entrypoints' is absent from the `packages` configuration. 2023-05-26T11:13:58,024 !! 2023-05-26T11:13:58,025 ******************************************************************************** 2023-05-26T11:13:58,025 ############################ 2023-05-26T11:13:58,025 # Package would be ignored # 2023-05-26T11:13:58,025 ############################ 2023-05-26T11:13:58,025 Python recognizes 'pmx.scripts.icolos_entrypoints' as an importable package[^1], 2023-05-26T11:13:58,025 but it is absent from setuptools' `packages` configuration. 2023-05-26T11:13:58,025 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T11:13:58,025 package, please make sure that 'pmx.scripts.icolos_entrypoints' is explicitly added 2023-05-26T11:13:58,026 to the `packages` configuration field. 2023-05-26T11:13:58,026 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T11:13:58,026 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T11:13:58,026 instead of `find_packages(...)`/`find:`). 2023-05-26T11:13:58,026 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T11:13:58,026 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T11:13:58,027 If you don't want 'pmx.scripts.icolos_entrypoints' to be distributed and are 2023-05-26T11:13:58,027 already explicitly excluding 'pmx.scripts.icolos_entrypoints' via 2023-05-26T11:13:58,027 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T11:13:58,027 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T11:13:58,027 combination with a more fine grained `package-data` configuration. 2023-05-26T11:13:58,027 You can read more about "package data files" on setuptools documentation page: 2023-05-26T11:13:58,028 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T11:13:58,028 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T11:13:58,028 even if it does not contain any `.py` files. 2023-05-26T11:13:58,028 On the other hand, currently there is no concept of package data 2023-05-26T11:13:58,028 directory, all directories are treated like packages. 2023-05-26T11:13:58,028 ******************************************************************************** 2023-05-26T11:13:58,029 !! 2023-05-26T11:13:58,029 check.warn(importable) 2023-05-26T11:13:58,033 creating build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T11:13:58,034 copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T11:13:58,042 copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T11:13:58,308 copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T11:13:58,310 copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T11:13:58,315 copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T11:13:58,320 copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T11:13:58,325 copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-05-26T11:13:58,329 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T11:13:58,330 copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T11:13:58,333 copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T11:13:58,335 copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T11:13:58,338 copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T11:13:58,341 copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T11:13:58,343 copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T11:13:58,346 copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-05-26T11:13:58,349 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,350 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,352 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,355 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,358 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,360 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,363 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,365 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,367 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,371 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,374 copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,377 copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,379 copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,381 copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,384 copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,387 copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,391 copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,393 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,395 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,398 copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,400 copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,402 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,447 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,469 copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,471 copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,473 copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,475 copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,478 copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,480 copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,481 copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,483 copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,485 copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,487 copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,489 copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,491 copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:13:58,493 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,494 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,497 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,499 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,500 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,503 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,505 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,507 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,511 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,514 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,516 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,519 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,547 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,551 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,553 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,555 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,556 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,559 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,562 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,565 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,567 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,569 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,571 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,572 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,574 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,626 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,647 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,654 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,659 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,661 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,664 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,666 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,669 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,671 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,674 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,676 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,678 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,681 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,683 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,685 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,687 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,690 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:13:58,692 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,693 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,695 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,697 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,700 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,702 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,704 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,708 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,711 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,713 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,716 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,736 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,739 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,741 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,743 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,746 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,749 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,752 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,755 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,758 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,760 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,762 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,764 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,767 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,819 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,845 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,852 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,856 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,859 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,862 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,864 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,866 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,868 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,871 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,874 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,876 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,878 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,880 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,882 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,885 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,887 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:13:58,890 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,891 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,893 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,895 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,898 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,900 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,902 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,907 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,910 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,913 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,915 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,917 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,919 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,923 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,926 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,929 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,931 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,933 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,936 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:58,938 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,009 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,031 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,033 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,036 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,038 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,041 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,044 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,046 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,048 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,050 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,053 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,055 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,057 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:13:59,060 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,061 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,063 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,066 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,068 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,070 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,072 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,076 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,078 copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,081 copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,084 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,086 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,089 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,091 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,093 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,096 copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,100 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,106 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,110 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,116 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,118 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,120 copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,122 copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,125 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,127 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,131 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,133 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,177 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,196 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,199 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,201 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,203 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,205 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,207 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,210 copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,212 copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,214 copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,216 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,218 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,220 copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,222 copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,224 copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:13:59,227 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,227 copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,231 copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,235 copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,259 copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,289 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,291 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,293 copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,295 copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,297 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,299 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,301 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,304 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,305 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,307 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,326 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,329 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,331 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,390 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,411 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,417 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,422 copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,423 copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,425 copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,427 copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,429 copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,431 copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:13:59,433 creating build/lib.linux-armv7l-cpython-39/pmx/extensions 2023-05-26T11:13:59,433 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T11:13:59,434 copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T11:13:59,437 copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T11:13:59,439 copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T11:13:59,442 copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T11:13:59,444 copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T11:13:59,446 copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T11:13:59,448 copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-05-26T11:13:59,451 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,452 copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,454 copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,458 copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,460 copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,463 copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,465 copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,467 copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,469 copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-05-26T11:13:59,471 creating build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,472 copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,474 copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,477 copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,479 copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,482 copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,484 copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,487 copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,490 copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,492 copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,494 copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,497 copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,500 copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,502 copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,504 copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-05-26T11:13:59,507 creating build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-05-26T11:13:59,508 copying src/pmx/scripts/icolos_entrypoints/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-05-26T11:13:59,510 copying src/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-05-26T11:13:59,515 UPDATING build/lib.linux-armv7l-cpython-39/pmx/_version.py 2023-05-26T11:13:59,516 set build/lib.linux-armv7l-cpython-39/pmx/_version.py to '3.0.3' 2023-05-26T11:13:59,516 running build_ext 2023-05-26T11:13:59,522 building 'pmx._pmx' extension 2023-05-26T11:13:59,524 creating build/temp.linux-armv7l-cpython-39 2023-05-26T11:13:59,524 creating build/temp.linux-armv7l-cpython-39/src 2023-05-26T11:13:59,525 creating build/temp.linux-armv7l-cpython-39/src/pmx 2023-05-26T11:13:59,526 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions 2023-05-26T11:13:59,526 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx 2023-05-26T11:13:59,527 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o 2023-05-26T11:14:00,469 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o 2023-05-26T11:14:01,642 src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’: 2023-05-26T11:14:01,643 src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-05-26T11:14:01,643 527 | int nx, ny, nz; 2023-05-26T11:14:01,643 | ^~ 2023-05-26T11:14:01,644 src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’: 2023-05-26T11:14:01,645 src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-05-26T11:14:01,645 586 | int nx, ny, nz; 2023-05-26T11:14:01,645 | ^~ 2023-05-26T11:14:03,286 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o 2023-05-26T11:14:03,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o 2023-05-26T11:14:04,974 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so 2023-05-26T11:14:05,097 building 'pmx._xdrio' extension 2023-05-26T11:14:05,098 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr 2023-05-26T11:14:05,099 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.9 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr/xdrfile.o 2023-05-26T11:14:05,141 src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment] 2023-05-26T11:14:05,141 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-26T11:14:05,142 | 2023-05-26T11:14:05,215 In file included from src/pmx/extensions/xdr/xdrfile.c:60: 2023-05-26T11:14:05,215 src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-26T11:14:05,215 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-26T11:14:05,215 | 2023-05-26T11:14:05,221 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’: 2023-05-26T11:14:05,222 src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T11:14:05,222 499 | while (size >= num && num_of_bits < 32) 2023-05-26T11:14:05,222 | ^~ 2023-05-26T11:14:05,222 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’: 2023-05-26T11:14:05,222 src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T11:14:05,223 545 | while (bytes[num_of_bytes] >= num) 2023-05-26T11:14:05,223 | ^~ 2023-05-26T11:14:05,223 src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’: 2023-05-26T11:14:05,224 src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T11:14:05,224 654 | if (num_of_bits >= num_of_bytes * 8) 2023-05-26T11:14:05,224 | ^~ 2023-05-26T11:14:05,224 src/pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T11:14:05,224 656 | for (i = 0; i < num_of_bytes; i++) 2023-05-26T11:14:05,224 | ^ 2023-05-26T11:14:05,225 src/pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T11:14:05,225 664 | for (i = 0; i < num_of_bytes-1; i++) 2023-05-26T11:14:05,225 | ^ 2023-05-26T11:14:05,225 src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’: 2023-05-26T11:14:05,225 src/pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T11:14:05,225 704 | if (lastbits < num_of_bits) 2023-05-26T11:14:05,226 | ^ 2023-05-26T11:14:05,227 src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-05-26T11:14:05,227 src/pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T11:14:05,228 814 | if(size3>xfp->buf1size) 2023-05-26T11:14:05,228 | ^ 2023-05-26T11:14:05,229 src/pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T11:14:05,229 866 | maxidx = (LASTIDXxfp->buf1size) 2023-05-26T11:14:05,234 | ^ 2023-05-26T11:14:05,239 src/pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T11:14:05,239 1133 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-05-26T11:14:05,239 | ^ 2023-05-26T11:14:05,239 src/pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T11:14:05,239 1139 | maxidx = (LASTIDXxfp->buf1size) 2023-05-26T11:14:05,246 | ^ 2023-05-26T11:14:05,247 src/pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T11:14:05,248 1366 | maxidx = (LASTIDXxfp->buf1size) { 2023-05-26T11:14:05,254 | ^ 2023-05-26T11:14:05,260 src/pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-26T11:14:05,260 1617 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-05-26T11:14:05,261 | ^ 2023-05-26T11:14:05,261 src/pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-26T11:14:05,261 1622 | maxidx = (LASTIDX build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,391 creating build/bdist.linux-armv7l/wheel/pmx/extensions 2023-05-26T11:14:08,392 creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T11:14:08,393 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T11:14:08,395 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T11:14:08,398 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T11:14:08,400 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T11:14:08,402 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T11:14:08,404 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T11:14:08,406 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-05-26T11:14:08,408 creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,409 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,411 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,413 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,415 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,417 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,421 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,423 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,424 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-05-26T11:14:08,426 copying build/lib.linux-armv7l-cpython-39/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,429 copying build/lib.linux-armv7l-cpython-39/pmx/rosetta_analyze.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,431 copying build/lib.linux-armv7l-cpython-39/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,433 copying build/lib.linux-armv7l-cpython-39/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,435 copying build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,442 copying build/lib.linux-armv7l-cpython-39/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,444 copying build/lib.linux-armv7l-cpython-39/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,446 copying build/lib.linux-armv7l-cpython-39/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,449 copying build/lib.linux-armv7l-cpython-39/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,451 copying build/lib.linux-armv7l-cpython-39/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,453 copying build/lib.linux-armv7l-cpython-39/pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,458 copying build/lib.linux-armv7l-cpython-39/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:08,460 creating build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T11:14:08,461 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T11:14:08,467 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T11:14:08,472 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T11:14:08,476 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T11:14:08,477 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T11:14:08,480 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,480 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,485 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,486 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,489 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,491 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,492 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,494 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,522 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,563 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,564 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,592 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,594 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,595 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,597 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,599 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,601 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,602 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,604 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,607 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,610 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,612 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,613 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,615 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,617 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,619 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,622 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,627 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,629 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,631 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,634 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,638 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,640 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,641 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,652 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,654 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,656 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,658 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,660 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,662 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,664 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,666 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-05-26T11:14:08,670 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,671 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,673 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,675 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,678 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,680 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,682 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,718 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,818 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,820 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,822 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,824 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,826 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,829 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,831 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,833 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,835 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,840 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,842 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,844 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,846 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,849 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,852 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,857 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,860 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,862 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,864 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,866 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,868 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,871 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,873 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,875 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,878 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-05-26T11:14:08,881 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T11:14:08,885 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:08,886 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:08,892 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:08,895 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:08,898 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:08,943 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:08,946 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:08,978 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,056 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,058 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,061 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,065 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,068 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,070 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,096 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,098 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,100 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,102 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,105 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,107 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,110 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,112 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,131 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,133 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,135 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,141 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,143 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-05-26T11:14:09,144 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T11:14:09,147 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T11:14:09,149 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T11:14:09,152 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,153 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,155 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,156 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,158 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,160 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,162 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,167 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,186 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,229 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,231 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,234 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,236 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,240 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,241 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,245 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,247 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,249 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,251 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,253 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,257 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,259 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,261 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,263 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,265 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,267 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,269 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,272 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,275 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,277 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,279 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,281 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,283 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,285 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,287 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,289 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,291 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,293 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,295 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,299 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,301 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,302 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-05-26T11:14:09,306 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,307 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,309 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,312 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,314 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,316 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,318 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,321 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,340 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,389 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,391 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,392 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,394 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,396 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,397 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,399 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,401 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,402 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,406 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,408 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,410 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,411 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,413 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,415 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,419 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,421 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,422 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,424 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,425 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,427 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,429 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,431 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,432 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,434 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,436 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-05-26T11:14:09,438 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T11:14:09,441 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,442 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,446 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,448 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,450 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,452 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,453 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,455 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,482 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,523 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,524 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,543 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,545 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,546 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,548 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,551 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,553 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,554 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,556 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,559 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,562 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,564 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,565 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,567 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,570 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,571 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,574 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,577 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,580 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,582 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,585 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,588 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,590 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,592 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,598 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,600 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,602 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,604 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,606 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,607 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,609 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-05-26T11:14:09,612 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-05-26T11:14:09,614 copying build/lib.linux-armv7l-cpython-39/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T11:14:09,616 copying build/lib.linux-armv7l-cpython-39/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T11:14:09,619 copying build/lib.linux-armv7l-cpython-39/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T11:14:09,870 copying build/lib.linux-armv7l-cpython-39/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-05-26T11:14:09,876 copying build/lib.linux-armv7l-cpython-39/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,881 creating build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,882 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,884 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,886 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,890 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,891 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,894 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,896 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,898 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,900 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,902 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,904 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,906 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,908 creating build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-05-26T11:14:09,910 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-05-26T11:14:09,912 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-05-26T11:14:09,913 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,916 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-05-26T11:14:09,918 copying build/lib.linux-armv7l-cpython-39/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,921 copying build/lib.linux-armv7l-cpython-39/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,923 copying build/lib.linux-armv7l-cpython-39/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,924 copying build/lib.linux-armv7l-cpython-39/pmx/atom.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,926 copying build/lib.linux-armv7l-cpython-39/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,930 copying build/lib.linux-armv7l-cpython-39/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,933 copying build/lib.linux-armv7l-cpython-39/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,937 copying build/lib.linux-armv7l-cpython-39/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,940 copying build/lib.linux-armv7l-cpython-39/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,942 copying build/lib.linux-armv7l-cpython-39/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,946 copying build/lib.linux-armv7l-cpython-39/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,949 copying build/lib.linux-armv7l-cpython-39/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,951 copying build/lib.linux-armv7l-cpython-39/pmx/utils.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,953 copying build/lib.linux-armv7l-cpython-39/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,955 copying build/lib.linux-armv7l-cpython-39/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,957 copying build/lib.linux-armv7l-cpython-39/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-05-26T11:14:09,960 running install_egg_info 2023-05-26T11:14:09,989 Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-3.0.3-py3.9.egg-info 2023-05-26T11:14:10,002 running install_scripts 2023-05-26T11:14:10,018 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-05-26T11:14:10,023 creating build/bdist.linux-armv7l/wheel/pmx_biobb-3.0.3.dist-info/WHEEL 2023-05-26T11:14:10,025 creating '/tmp/pip-wheel-e_8o0g39/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-26T11:14:10,028 adding 'pmx/__init__.py' 2023-05-26T11:14:10,066 adding 'pmx/_pmx.cpython-39-arm-linux-gnueabihf.so' 2023-05-26T11:14:10,069 adding 'pmx/_version.py' 2023-05-26T11:14:10,095 adding 'pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so' 2023-05-26T11:14:10,103 adding 'pmx/alchemy.py' 2023-05-26T11:14:10,106 adding 'pmx/analysis.py' 2023-05-26T11:14:10,108 adding 'pmx/atom.py' 2023-05-26T11:14:10,111 adding 'pmx/atomselection.py' 2023-05-26T11:14:10,113 adding 'pmx/builder.py' 2023-05-26T11:14:10,117 adding 'pmx/chain.py' 2023-05-26T11:14:10,121 adding 'pmx/estimators.py' 2023-05-26T11:14:10,124 adding 'pmx/ffparser.py' 2023-05-26T11:14:10,133 adding 'pmx/forcefield.py' 2023-05-26T11:14:10,136 adding 'pmx/geometry.py' 2023-05-26T11:14:10,137 adding 'pmx/gmx.py' 2023-05-26T11:14:10,139 adding 'pmx/jobscript.py' 2023-05-26T11:14:10,148 adding 'pmx/library.py' 2023-05-26T11:14:10,161 adding 'pmx/ligand_alchemy.py' 2023-05-26T11:14:10,167 adding 'pmx/model.py' 2023-05-26T11:14:10,171 adding 'pmx/molecule.py' 2023-05-26T11:14:10,172 adding 'pmx/mutdb.py' 2023-05-26T11:14:10,174 adding 'pmx/ndx.py' 2023-05-26T11:14:10,177 adding 'pmx/options.py' 2023-05-26T11:14:10,179 adding 'pmx/parser.py' 2023-05-26T11:14:10,182 adding 'pmx/rosetta.py' 2023-05-26T11:14:10,184 adding 'pmx/rosetta_analyze.py' 2023-05-26T11:14:10,187 adding 'pmx/rotamer.py' 2023-05-26T11:14:10,189 adding 'pmx/utils.py' 2023-05-26T11:14:10,191 adding 'pmx/xdrfile.py' 2023-05-26T11:14:10,192 adding 'pmx/xtc.py' 2023-05-26T11:14:10,219 adding 'pmx/data/aminoacids.pkl' 2023-05-26T11:14:12,062 adding 'pmx/data/bbdep.pkl' 2023-05-26T11:14:12,170 adding 'pmx/data/blosum62_new.mat' 2023-05-26T11:14:12,186 adding 'pmx/data/bp.pkl' 2023-05-26T11:14:12,207 adding 'pmx/data/bp_amber.pkl' 2023-05-26T11:14:12,228 adding 'pmx/data/bp_charmm.pkl' 2023-05-26T11:14:12,237 adding 'pmx/data/rna.pkl' 2023-05-26T11:14:12,240 adding 'pmx/data/mutff/atommass.dat' 2023-05-26T11:14:12,241 adding 'pmx/data/mutff/elements.dat' 2023-05-26T11:14:12,243 adding 'pmx/data/mutff/residuetypes.dat' 2023-05-26T11:14:12,249 adding 'pmx/data/mutff/spc216.gro' 2023-05-26T11:14:12,251 adding 'pmx/data/mutff/specbond.dat' 2023-05-26T11:14:12,252 adding 'pmx/data/mutff/vdwradii.dat' 2023-05-26T11:14:12,253 adding 'pmx/data/mutff/xlateat.dat' 2023-05-26T11:14:12,255 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am' 2023-05-26T11:14:12,258 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in' 2023-05-26T11:14:12,260 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn' 2023-05-26T11:14:12,261 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb' 2023-05-26T11:14:12,263 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb' 2023-05-26T11:14:12,265 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb' 2023-05-26T11:14:12,266 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b' 2023-05-26T11:14:12,273 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp' 2023-05-26T11:14:12,275 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd' 2023-05-26T11:14:12,276 adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp' 2023-05-26T11:14:12,278 adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn' 2023-05-26T11:14:12,279 adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb' 2023-05-26T11:14:12,280 adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b' 2023-05-26T11:14:12,282 adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp' 2023-05-26T11:14:12,290 adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp' 2023-05-26T11:14:12,292 adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp' 2023-05-26T11:14:12,293 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc' 2023-05-26T11:14:12,294 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp' 2023-05-26T11:14:12,296 adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp' 2023-05-26T11:14:12,297 adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp' 2023-05-26T11:14:12,479 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp' 2023-05-26T11:14:12,564 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp' 2023-05-26T11:14:12,574 adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn' 2023-05-26T11:14:12,575 adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb' 2023-05-26T11:14:12,576 adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b' 2023-05-26T11:14:12,579 adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp' 2023-05-26T11:14:12,580 adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp' 2023-05-26T11:14:12,581 adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp' 2023-05-26T11:14:12,583 adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp' 2023-05-26T11:14:12,584 adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp' 2023-05-26T11:14:12,585 adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp' 2023-05-26T11:14:12,587 adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp' 2023-05-26T11:14:12,588 adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp' 2023-05-26T11:14:12,590 adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat' 2023-05-26T11:14:12,594 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn' 2023-05-26T11:14:12,595 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup' 2023-05-26T11:14:12,597 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb' 2023-05-26T11:14:12,598 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb' 2023-05-26T11:14:12,599 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb' 2023-05-26T11:14:12,601 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b' 2023-05-26T11:14:12,609 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp' 2023-05-26T11:14:12,612 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd' 2023-05-26T11:14:12,613 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp' 2023-05-26T11:14:12,617 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-05-26T11:14:12,680 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres' 2023-05-26T11:14:12,691 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp' 2023-05-26T11:14:12,693 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn' 2023-05-26T11:14:12,694 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb' 2023-05-26T11:14:12,695 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b' 2023-05-26T11:14:12,698 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp' 2023-05-26T11:14:12,700 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp' 2023-05-26T11:14:12,705 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp' 2023-05-26T11:14:12,707 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp' 2023-05-26T11:14:12,708 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc' 2023-05-26T11:14:12,710 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp' 2023-05-26T11:14:12,711 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp' 2023-05-26T11:14:12,713 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp' 2023-05-26T11:14:12,872 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp' 2023-05-26T11:14:12,951 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp' 2023-05-26T11:14:12,977 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp' 2023-05-26T11:14:12,986 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp' 2023-05-26T11:14:12,990 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp' 2023-05-26T11:14:12,992 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp' 2023-05-26T11:14:12,994 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn' 2023-05-26T11:14:12,995 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb' 2023-05-26T11:14:12,997 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b' 2023-05-26T11:14:12,999 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp' 2023-05-26T11:14:13,001 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp' 2023-05-26T11:14:13,002 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp' 2023-05-26T11:14:13,003 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp' 2023-05-26T11:14:13,005 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp' 2023-05-26T11:14:13,006 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp' 2023-05-26T11:14:13,007 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp' 2023-05-26T11:14:13,009 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp' 2023-05-26T11:14:13,010 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat' 2023-05-26T11:14:13,012 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn' 2023-05-26T11:14:13,014 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb' 2023-05-26T11:14:13,015 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb' 2023-05-26T11:14:13,016 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb' 2023-05-26T11:14:13,018 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b' 2023-05-26T11:14:13,026 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp' 2023-05-26T11:14:13,028 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd' 2023-05-26T11:14:13,030 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp' 2023-05-26T11:14:13,034 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-05-26T11:14:13,097 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres' 2023-05-26T11:14:13,108 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp' 2023-05-26T11:14:13,109 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn' 2023-05-26T11:14:13,111 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb' 2023-05-26T11:14:13,112 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b' 2023-05-26T11:14:13,114 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp' 2023-05-26T11:14:13,117 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp' 2023-05-26T11:14:13,121 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp' 2023-05-26T11:14:13,123 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp' 2023-05-26T11:14:13,124 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc' 2023-05-26T11:14:13,125 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp' 2023-05-26T11:14:13,127 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp' 2023-05-26T11:14:13,128 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp' 2023-05-26T11:14:13,288 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp' 2023-05-26T11:14:13,367 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp' 2023-05-26T11:14:13,392 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp' 2023-05-26T11:14:13,402 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp' 2023-05-26T11:14:13,405 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp' 2023-05-26T11:14:13,408 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp' 2023-05-26T11:14:13,409 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn' 2023-05-26T11:14:13,411 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb' 2023-05-26T11:14:13,412 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b' 2023-05-26T11:14:13,414 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp' 2023-05-26T11:14:13,416 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp' 2023-05-26T11:14:13,417 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp' 2023-05-26T11:14:13,418 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp' 2023-05-26T11:14:13,420 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp' 2023-05-26T11:14:13,421 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp' 2023-05-26T11:14:13,422 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp' 2023-05-26T11:14:13,424 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp' 2023-05-26T11:14:13,425 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat' 2023-05-26T11:14:13,428 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn' 2023-05-26T11:14:13,429 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-05-26T11:14:13,431 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-05-26T11:14:13,432 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-05-26T11:14:13,433 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-05-26T11:14:13,442 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp' 2023-05-26T11:14:13,444 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-05-26T11:14:13,446 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp' 2023-05-26T11:14:13,447 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn' 2023-05-26T11:14:13,448 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-05-26T11:14:13,450 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-05-26T11:14:13,452 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-05-26T11:14:13,456 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp' 2023-05-26T11:14:13,458 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp' 2023-05-26T11:14:13,460 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc' 2023-05-26T11:14:13,461 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-05-26T11:14:13,462 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-05-26T11:14:13,464 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp' 2023-05-26T11:14:13,654 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp' 2023-05-26T11:14:13,747 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp' 2023-05-26T11:14:13,757 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn' 2023-05-26T11:14:13,758 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-05-26T11:14:13,760 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-05-26T11:14:13,762 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-05-26T11:14:13,763 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp' 2023-05-26T11:14:13,765 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp' 2023-05-26T11:14:13,766 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-05-26T11:14:13,767 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-05-26T11:14:13,768 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-05-26T11:14:13,770 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-05-26T11:14:13,771 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp' 2023-05-26T11:14:13,772 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-05-26T11:14:13,774 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn' 2023-05-26T11:14:13,775 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb' 2023-05-26T11:14:13,777 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb' 2023-05-26T11:14:13,778 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb' 2023-05-26T11:14:13,779 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b' 2023-05-26T11:14:13,783 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp' 2023-05-26T11:14:13,785 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd' 2023-05-26T11:14:13,788 adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp' 2023-05-26T11:14:13,792 adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp' 2023-05-26T11:14:13,794 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn' 2023-05-26T11:14:13,795 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb' 2023-05-26T11:14:13,796 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb' 2023-05-26T11:14:13,797 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb' 2023-05-26T11:14:13,799 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp' 2023-05-26T11:14:13,807 adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp' 2023-05-26T11:14:13,815 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp' 2023-05-26T11:14:13,819 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp' 2023-05-26T11:14:13,831 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp' 2023-05-26T11:14:13,833 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc' 2023-05-26T11:14:13,835 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp' 2023-05-26T11:14:13,836 adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp' 2023-05-26T11:14:13,837 adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp' 2023-05-26T11:14:13,839 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb' 2023-05-26T11:14:13,843 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp' 2023-05-26T11:14:13,844 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn' 2023-05-26T11:14:13,998 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp' 2023-05-26T11:14:14,075 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp' 2023-05-26T11:14:14,084 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn' 2023-05-26T11:14:14,085 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb' 2023-05-26T11:14:14,086 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb' 2023-05-26T11:14:14,088 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb' 2023-05-26T11:14:14,089 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b' 2023-05-26T11:14:14,091 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp' 2023-05-26T11:14:14,092 adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp' 2023-05-26T11:14:14,093 adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp' 2023-05-26T11:14:14,094 adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp' 2023-05-26T11:14:14,095 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp' 2023-05-26T11:14:14,097 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp' 2023-05-26T11:14:14,098 adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp' 2023-05-26T11:14:14,099 adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp' 2023-05-26T11:14:14,100 adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat' 2023-05-26T11:14:14,104 adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp' 2023-05-26T11:14:14,117 adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp' 2023-05-26T11:14:14,202 adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp' 2023-05-26T11:14:14,333 adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp' 2023-05-26T11:14:14,349 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc' 2023-05-26T11:14:14,350 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp' 2023-05-26T11:14:14,351 adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp' 2023-05-26T11:14:14,352 adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp' 2023-05-26T11:14:14,355 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn' 2023-05-26T11:14:14,356 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb' 2023-05-26T11:14:14,358 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb' 2023-05-26T11:14:14,360 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb' 2023-05-26T11:14:14,361 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b' 2023-05-26T11:14:14,502 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp' 2023-05-26T11:14:14,511 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd' 2023-05-26T11:14:14,512 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn' 2023-05-26T11:14:14,680 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp' 2023-05-26T11:14:14,765 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp' 2023-05-26T11:14:14,790 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp' 2023-05-26T11:14:14,799 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp' 2023-05-26T11:14:14,801 adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp' 2023-05-26T11:14:14,802 adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp' 2023-05-26T11:14:14,803 adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp' 2023-05-26T11:14:14,805 adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp' 2023-05-26T11:14:14,806 adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp' 2023-05-26T11:14:14,808 adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat' 2023-05-26T11:14:14,810 adding 'pmx/extensions/pmx/Energy.c' 2023-05-26T11:14:14,813 adding 'pmx/extensions/pmx/Geometry.c' 2023-05-26T11:14:14,816 adding 'pmx/extensions/pmx/Geometry.h' 2023-05-26T11:14:14,817 adding 'pmx/extensions/pmx/cpp_test.cpp' 2023-05-26T11:14:14,819 adding 'pmx/extensions/pmx/init.c' 2023-05-26T11:14:14,820 adding 'pmx/extensions/pmx/pmx.h' 2023-05-26T11:14:14,822 adding 'pmx/extensions/pmx/wrap_Geometry.c' 2023-05-26T11:14:14,825 adding 'pmx/extensions/xdr/trr2xtc.c' 2023-05-26T11:14:14,831 adding 'pmx/extensions/xdr/xdrfile.c' 2023-05-26T11:14:14,834 adding 'pmx/extensions/xdr/xdrfile.h' 2023-05-26T11:14:14,836 adding 'pmx/extensions/xdr/xdrfile_c_test.c' 2023-05-26T11:14:14,838 adding 'pmx/extensions/xdr/xdrfile_trr.c' 2023-05-26T11:14:14,840 adding 'pmx/extensions/xdr/xdrfile_trr.h' 2023-05-26T11:14:14,841 adding 'pmx/extensions/xdr/xdrfile_xtc.c' 2023-05-26T11:14:14,842 adding 'pmx/extensions/xdr/xdrfile_xtc.h' 2023-05-26T11:14:14,844 adding 'pmx/scripts/__init__.py' 2023-05-26T11:14:14,847 adding 'pmx/scripts/analyze_dhdl.py' 2023-05-26T11:14:14,850 adding 'pmx/scripts/atomMapping.py' 2023-05-26T11:14:14,852 adding 'pmx/scripts/build_cyclic_top.py' 2023-05-26T11:14:14,853 adding 'pmx/scripts/cli.py' 2023-05-26T11:14:14,860 adding 'pmx/scripts/generate_hybrid_residue.py' 2023-05-26T11:14:14,863 adding 'pmx/scripts/generate_hybrid_topology.py' 2023-05-26T11:14:14,865 adding 'pmx/scripts/ligandHybrid.py' 2023-05-26T11:14:14,866 adding 'pmx/scripts/make_double_box.py' 2023-05-26T11:14:14,868 adding 'pmx/scripts/md_setup.py' 2023-05-26T11:14:14,871 adding 'pmx/scripts/mutate.py' 2023-05-26T11:14:14,873 adding 'pmx/scripts/prepare_crooks_runs.py' 2023-05-26T11:14:14,875 adding 'pmx/scripts/set_gmxlib.py' 2023-05-26T11:14:14,877 adding 'pmx/scripts/setup_abfe.py' 2023-05-26T11:14:14,879 adding 'pmx/scripts/icolos_entrypoints/__init__.py' 2023-05-26T11:14:14,881 adding 'pmx/scripts/icolos_entrypoints/assemble_systems.py' 2023-05-26T11:14:14,883 adding 'pmx_biobb-3.0.3.dist-info/LICENSE' 2023-05-26T11:14:14,885 adding 'pmx_biobb-3.0.3.dist-info/METADATA' 2023-05-26T11:14:14,886 adding 'pmx_biobb-3.0.3.dist-info/WHEEL' 2023-05-26T11:14:14,887 adding 'pmx_biobb-3.0.3.dist-info/entry_points.txt' 2023-05-26T11:14:14,887 adding 'pmx_biobb-3.0.3.dist-info/top_level.txt' 2023-05-26T11:14:14,892 adding 'pmx_biobb-3.0.3.dist-info/RECORD' 2023-05-26T11:14:14,952 removing build/bdist.linux-armv7l/wheel 2023-05-26T11:14:15,131 Building wheel for pmx-biobb (setup.py): finished with status 'done' 2023-05-26T11:14:15,192 Created wheel for pmx-biobb: filename=pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl size=5907756 sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 2023-05-26T11:14:15,194 Stored in directory: /tmp/pip-ephem-wheel-cache-n1jchb_4/wheels/3b/6a/99/2d3d67921e6684c74ba090afab2fb036eba94e2d9caa21b87b 2023-05-26T11:14:15,216 Successfully built pmx-biobb 2023-05-26T11:14:15,361 Removed build tracker: '/tmp/pip-build-tracker-s7mefgwy'