2023-05-27T21:23:52,231 Created temporary directory: /tmp/pip-build-tracker-hcywbx_9 2023-05-27T21:23:52,232 Initialized build tracking at /tmp/pip-build-tracker-hcywbx_9 2023-05-27T21:23:52,232 Created build tracker: /tmp/pip-build-tracker-hcywbx_9 2023-05-27T21:23:52,232 Entered build tracker: /tmp/pip-build-tracker-hcywbx_9 2023-05-27T21:23:52,233 Created temporary directory: /tmp/pip-wheel-06uqvwdr 2023-05-27T21:23:52,236 Created temporary directory: /tmp/pip-ephem-wheel-cache-ccjpw8tc 2023-05-27T21:23:52,261 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-27T21:23:52,264 2 location(s) to search for versions of mdanalysis: 2023-05-27T21:23:52,264 * https://pypi.org/simple/mdanalysis/ 2023-05-27T21:23:52,264 * https://www.piwheels.org/simple/mdanalysis/ 2023-05-27T21:23:52,264 Fetching project page and analyzing links: https://pypi.org/simple/mdanalysis/ 2023-05-27T21:23:52,265 Getting page https://pypi.org/simple/mdanalysis/ 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https://files.pythonhosted.org/packages/4f/a1/af895e16f737ddec418f1b3da2a27868111eee59bef5816209531e3cae81/MDAnalysis-2.5.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-05-27T21:23:52,380 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5c/e6/0a150fec191ba3d421ae2ac183fc51bfddb0031fc4190e1832605158a845/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-05-27T21:23:52,380 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/28/c26a404ee253d0839b6ea21053b79e5662883b92b1672ff0e1678b679f44/MDAnalysis-2.5.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-05-27T21:23:52,380 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/36/c4/6d7e584d3dbccc8f197ed6acc47ec8c72dc4a11b101192c91d122079ec17/MDAnalysis-2.5.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-05-27T21:23:52,380 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/80/72619db87e3b6997b84a817605439aa2c37b0e083aada34e4d3a312f4ea5/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-05-27T21:23:52,380 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b1/b5/fb8748f0b076b2d01df6f6d80bfcd6a94e07f1a9d35c636e085b511ca12d/MDAnalysis-2.5.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-05-27T21:23:52,381 Found link https://files.pythonhosted.org/packages/a8/49/d03958061c86cbb2d2c8aa4019fd7cb575f5fd49988f6df69e957c64a28f/MDAnalysis-2.5.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.5.0 2023-05-27T21:23:52,381 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdanalysis/ 2023-05-27T21:23:52,382 Getting page https://www.piwheels.org/simple/mdanalysis/ 2023-05-27T21:23:52,383 Found index url https://www.piwheels.org/simple/ 2023-05-27T21:23:52,556 Fetched page https://www.piwheels.org/simple/mdanalysis/ as text/html 2023-05-27T21:23:52,587 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv7l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8) 2023-05-27T21:23:52,587 Skipping link: No binaries permitted for mdanalysis: 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2023-05-27T21:23:52,592 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9) 2023-05-27T21:23:52,593 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9) 2023-05-27T21:23:52,593 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/) 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https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv7l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,595 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv6l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,595 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv6l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,595 Skipping link: No binaries permitted for mdanalysis: 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https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,596 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,596 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv6l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,597 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv7l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,597 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv6l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,597 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv7l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,597 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv7l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,597 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv6l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv6l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv7l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv7l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv6l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv7l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv6l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv7l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv6l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv6l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv7l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv6l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv7l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv6l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv7l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv6l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv7l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv7l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv6l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,604 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,604 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,604 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,604 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,604 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,604 Skipping link: No binaries permitted for mdanalysis: 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https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv6l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,605 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv7l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,605 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv6l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,606 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv7l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,606 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv7l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,606 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv6l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,606 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv7l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,606 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv6l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,607 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv6l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,607 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv7l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,607 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv7l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,607 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv6l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,607 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv7l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,608 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv6l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,608 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv6l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,608 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv7l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,608 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv6l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,608 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv7l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,608 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv6l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,609 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv7l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/) 2023-05-27T21:23:52,609 Skipping link: not a file: https://www.piwheels.org/simple/mdanalysis/ 2023-05-27T21:23:52,609 Skipping link: not a file: https://pypi.org/simple/mdanalysis/ 2023-05-27T21:23:52,632 Given no hashes to check 1 links for project 'mdanalysis': discarding no candidates 2023-05-27T21:23:52,648 Collecting mdanalysis==2.5.0 2023-05-27T21:23:52,650 Created temporary directory: /tmp/pip-unpack-iv75ln75 2023-05-27T21:23:52,781 Downloading MDAnalysis-2.5.0.tar.gz (3.8 MB) 2023-05-27T21:23:55,149 Added mdanalysis==2.5.0 from https://files.pythonhosted.org/packages/a8/49/d03958061c86cbb2d2c8aa4019fd7cb575f5fd49988f6df69e957c64a28f/MDAnalysis-2.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-hcywbx_9' 2023-05-27T21:23:55,180 Created temporary directory: /tmp/pip-build-env-6_kkyyxj 2023-05-27T21:23:55,190 Installing build dependencies: started 2023-05-27T21:23:55,191 Running command pip subprocess to install build dependencies 2023-05-27T21:23:56,361 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-05-27T21:23:56,736 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-27T21:23:56,738 Ignoring numpy: markers 'python_version == "3.10" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment 2023-05-27T21:23:56,739 Ignoring numpy: markers 'python_version == "3.10" and platform_system != "Windows" and platform_python_implementation != "PyPy"' don't match your environment 2023-05-27T21:23:56,740 Ignoring numpy: markers 'python_version == "3.11" and platform_python_implementation != "PyPy"' don't match your environment 2023-05-27T21:23:56,742 Ignoring numpy: markers 'python_version >= "3.12"' don't match your environment 2023-05-27T21:23:58,380 Collecting Cython>=0.28 2023-05-27T21:23:58,752 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.35-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-05-27T21:23:59,066 Collecting packaging 2023-05-27T21:23:59,084 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-05-27T21:24:00,249 Collecting numpy==1.21.0 2023-05-27T21:24:00,270 Downloading https://www.piwheels.org/simple/numpy/numpy-1.21.0-cp39-cp39-linux_armv7l.whl (12.2 MB) 2023-05-27T21:24:01,489 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.2/12.2 MB 9.3 MB/s eta 0:00:00 2023-05-27T21:24:03,188 Collecting setuptools 2023-05-27T21:24:03,268 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB) 2023-05-27T21:24:03,533 Collecting wheel 2023-05-27T21:24:03,557 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-05-27T21:24:05,433 Installing collected packages: wheel, setuptools, packaging, numpy, Cython 2023-05-27T21:24:05,659 Creating /tmp/pip-build-env-6_kkyyxj/overlay/bin 2023-05-27T21:24:05,661 changing mode of /tmp/pip-build-env-6_kkyyxj/overlay/bin/wheel to 755 2023-05-27T21:24:15,546 changing mode of /tmp/pip-build-env-6_kkyyxj/overlay/bin/f2py to 755 2023-05-27T21:24:15,548 changing mode of /tmp/pip-build-env-6_kkyyxj/overlay/bin/f2py3 to 755 2023-05-27T21:24:15,551 changing mode of /tmp/pip-build-env-6_kkyyxj/overlay/bin/f2py3.9 to 755 2023-05-27T21:24:18,445 changing mode of /tmp/pip-build-env-6_kkyyxj/overlay/bin/cygdb to 755 2023-05-27T21:24:18,447 changing mode of /tmp/pip-build-env-6_kkyyxj/overlay/bin/cython to 755 2023-05-27T21:24:18,449 changing mode of /tmp/pip-build-env-6_kkyyxj/overlay/bin/cythonize to 755 2023-05-27T21:24:18,475 Successfully installed Cython-0.29.35 numpy-1.21.0 packaging-23.1 setuptools-67.8.0 wheel-0.40.0 2023-05-27T21:24:18,858 Installing build dependencies: finished with status 'done' 2023-05-27T21:24:18,869 Getting requirements to build wheel: started 2023-05-27T21:24:18,870 Running command Getting requirements to build wheel 2023-05-27T21:24:54,979 Attempting to autodetect OpenMP support... Compiler supports OpenMP 2023-05-27T21:24:54,980 Will attempt to use Cython. 2023-05-27T21:24:54,980 Compiling MDAnalysis/lib/formats/libdcd.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,981 Compiling MDAnalysis/lib/c_distances.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,981 Compiling MDAnalysis/lib/c_distances_openmp.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,981 Compiling MDAnalysis/lib/qcprot.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,981 Compiling MDAnalysis/lib/formats/libmdaxdr.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,981 Compiling MDAnalysis/lib/formats/cython_util.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,981 Compiling MDAnalysis/analysis/encore/cutils.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,981 Compiling MDAnalysis/analysis/encore/clustering/affinityprop.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,981 Compiling MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-05-27T21:24:54,982 Compiling MDAnalysis/lib/_cutil.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-05-27T21:24:54,982 Compiling MDAnalysis/lib/_augment.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-05-27T21:24:54,982 Compiling MDAnalysis/lib/nsgrid.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-05-27T21:24:54,982 Compiling MDAnalysis/coordinates/timestep.pyx because it depends on /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/__init__.pxd. 2023-05-27T21:24:54,982 [ 1/13] Cythonizing MDAnalysis/lib/_augment.pyx 2023-05-27T21:24:54,982 [ 2/13] Cythonizing MDAnalysis/lib/_cutil.pyx 2023-05-27T21:24:54,982 [ 3/13] Cythonizing MDAnalysis/lib/nsgrid.pyx 2023-05-27T21:24:54,982 [ 4/13] Cythonizing MDAnalysis/analysis/encore/clustering/affinityprop.pyx 2023-05-27T21:24:54,983 [ 5/13] Cythonizing MDAnalysis/analysis/encore/cutils.pyx 2023-05-27T21:24:54,983 [ 6/13] Cythonizing MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx 2023-05-27T21:24:54,983 [ 7/13] Cythonizing MDAnalysis/coordinates/timestep.pyx 2023-05-27T21:24:54,983 [ 8/13] Cythonizing MDAnalysis/lib/c_distances.pyx 2023-05-27T21:24:54,983 [ 9/13] Cythonizing MDAnalysis/lib/c_distances_openmp.pyx 2023-05-27T21:24:54,983 [10/13] Cythonizing MDAnalysis/lib/formats/cython_util.pyx 2023-05-27T21:24:54,983 [11/13] Cythonizing MDAnalysis/lib/formats/libdcd.pyx 2023-05-27T21:24:54,984 [12/13] Cythonizing MDAnalysis/lib/formats/libmdaxdr.pyx 2023-05-27T21:24:54,984 [13/13] Cythonizing MDAnalysis/lib/qcprot.pyx 2023-05-27T21:24:55,855 Getting requirements to build wheel: finished with status 'done' 2023-05-27T21:24:55,868 Created temporary directory: /tmp/pip-modern-metadata-2vla2k6x 2023-05-27T21:24:55,870 Preparing metadata (pyproject.toml): started 2023-05-27T21:24:55,871 Running command Preparing metadata (pyproject.toml) 2023-05-27T21:24:57,771 Attempting to autodetect OpenMP support... Compiler supports OpenMP 2023-05-27T21:24:57,772 Will attempt to use Cython. 2023-05-27T21:24:58,106 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:69: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-05-27T21:24:58,106 corresp(dist, value, root_dir) 2023-05-27T21:24:58,394 running dist_info 2023-05-27T21:24:58,401 creating /tmp/pip-modern-metadata-2vla2k6x/MDAnalysis.egg-info 2023-05-27T21:24:58,406 writing /tmp/pip-modern-metadata-2vla2k6x/MDAnalysis.egg-info/PKG-INFO 2023-05-27T21:24:58,410 writing dependency_links to /tmp/pip-modern-metadata-2vla2k6x/MDAnalysis.egg-info/dependency_links.txt 2023-05-27T21:24:58,413 writing requirements to /tmp/pip-modern-metadata-2vla2k6x/MDAnalysis.egg-info/requires.txt 2023-05-27T21:24:58,414 writing top-level names to /tmp/pip-modern-metadata-2vla2k6x/MDAnalysis.egg-info/top_level.txt 2023-05-27T21:24:58,415 writing manifest file '/tmp/pip-modern-metadata-2vla2k6x/MDAnalysis.egg-info/SOURCES.txt' 2023-05-27T21:24:58,461 reading manifest file '/tmp/pip-modern-metadata-2vla2k6x/MDAnalysis.egg-info/SOURCES.txt' 2023-05-27T21:24:58,464 reading manifest template 'MANIFEST.in' 2023-05-27T21:24:58,619 warning: no previously-included files matching 'doc/html/html' found anywhere in distribution 2023-05-27T21:24:58,621 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-05-27T21:24:58,622 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-05-27T21:24:58,624 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2023-05-27T21:24:58,625 warning: no previously-included files matching '*~' found anywhere in distribution 2023-05-27T21:24:58,627 warning: no previously-included files matching '.git' found anywhere in distribution 2023-05-27T21:24:58,627 adding license file 'LICENSE' 2023-05-27T21:24:58,627 adding license file 'AUTHORS' 2023-05-27T21:24:58,644 writing manifest file '/tmp/pip-modern-metadata-2vla2k6x/MDAnalysis.egg-info/SOURCES.txt' 2023-05-27T21:24:58,646 creating '/tmp/pip-modern-metadata-2vla2k6x/MDAnalysis-2.5.0.dist-info' 2023-05-27T21:24:58,878 Preparing metadata (pyproject.toml): finished with status 'done' 2023-05-27T21:24:58,888 Source in /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a has version 2.5.0, which satisfies requirement mdanalysis==2.5.0 from https://files.pythonhosted.org/packages/a8/49/d03958061c86cbb2d2c8aa4019fd7cb575f5fd49988f6df69e957c64a28f/MDAnalysis-2.5.0.tar.gz 2023-05-27T21:24:58,889 Removed mdanalysis==2.5.0 from https://files.pythonhosted.org/packages/a8/49/d03958061c86cbb2d2c8aa4019fd7cb575f5fd49988f6df69e957c64a28f/MDAnalysis-2.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-hcywbx_9' 2023-05-27T21:24:58,899 Created temporary directory: /tmp/pip-unpack-jqiq1kp6 2023-05-27T21:24:58,899 Building wheels for collected packages: mdanalysis 2023-05-27T21:24:58,903 Created temporary directory: /tmp/pip-wheel-g41nnsmv 2023-05-27T21:24:58,903 Destination directory: /tmp/pip-wheel-g41nnsmv 2023-05-27T21:24:58,906 Building wheel for mdanalysis (pyproject.toml): started 2023-05-27T21:24:58,907 Running command Building wheel for mdanalysis (pyproject.toml) 2023-05-27T21:25:00,674 Attempting to autodetect OpenMP support... Compiler supports OpenMP 2023-05-27T21:25:00,674 Will attempt to use Cython. 2023-05-27T21:25:00,790 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:69: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-05-27T21:25:00,790 corresp(dist, value, root_dir) 2023-05-27T21:25:01,059 running bdist_wheel 2023-05-27T21:25:01,079 running build 2023-05-27T21:25:01,080 running build_py 2023-05-27T21:25:01,086 creating build 2023-05-27T21:25:01,087 creating build/lib.linux-armv7l-cpython-39 2023-05-27T21:25:01,088 creating build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-05-27T21:25:01,089 copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-05-27T21:25:01,091 copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-05-27T21:25:01,093 copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-05-27T21:25:01,095 copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-05-27T21:25:01,097 copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-05-27T21:25:01,100 copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-05-27T21:25:01,102 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-05-27T21:25:01,103 copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-05-27T21:25:01,105 copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-05-27T21:25:01,107 copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-05-27T21:25:01,109 copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-05-27T21:25:01,111 copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-05-27T21:25:01,113 copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-05-27T21:25:01,115 copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-05-27T21:25:01,117 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization 2023-05-27T21:25:01,118 copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization 2023-05-27T21:25:01,121 copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization 2023-05-27T21:25:01,123 copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization 2023-05-27T21:25:01,126 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-05-27T21:25:01,127 copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-05-27T21:25:01,130 copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-05-27T21:25:01,132 copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-05-27T21:25:01,135 copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-05-27T21:25:01,137 copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-05-27T21:25:01,139 copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-05-27T21:25:01,141 copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-05-27T21:25:01,144 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/tests 2023-05-27T21:25:01,145 copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/tests 2023-05-27T21:25:01,147 copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/tests 2023-05-27T21:25:01,150 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-05-27T21:25:01,151 copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-05-27T21:25:01,153 copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-05-27T21:25:01,155 copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-05-27T21:25:01,158 copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-05-27T21:25:01,160 copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-05-27T21:25:01,164 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,165 copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,168 copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,169 copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,172 copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,174 copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,177 copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,179 copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,180 copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,182 copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,184 copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,188 copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,190 copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,193 copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,196 copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,198 copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,201 copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,203 copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,206 copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,208 copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,210 copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,212 copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,215 copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,217 copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,219 copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,222 copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,225 copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,227 copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,229 copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,232 copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,234 copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,236 copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,240 copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,243 copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,246 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,247 copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,250 copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,252 copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,256 copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,258 copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,261 copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,263 copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,266 copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,269 copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,271 copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,274 copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,277 copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,280 copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,283 copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,285 copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,287 copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,290 copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,292 copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,295 copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,297 copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,301 copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,303 copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,306 copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,308 copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:25:01,312 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,313 copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,315 copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,318 copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,321 copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,323 copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,326 copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,328 copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,331 copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,333 copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,335 copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,338 copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,340 copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,342 copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,345 copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,347 copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,349 copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,352 copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,354 copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,357 copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,359 copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,361 copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,363 copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,365 copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,367 copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,369 copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,371 copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,373 copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,375 copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-05-27T21:25:01,377 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,378 copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,381 copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,383 copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,386 copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,388 copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,391 copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,394 copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,396 copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,400 copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,402 copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,406 copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,409 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,410 copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,413 copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,419 copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,421 copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,425 copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,430 copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,431 copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,434 copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,436 copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-05-27T21:25:01,439 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,440 copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,442 copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,444 copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,447 copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,449 copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,451 copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,453 copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,455 copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,457 copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-05-27T21:25:01,459 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:01,460 copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:01,462 copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:01,466 copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:01,468 copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:01,470 copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:01,472 copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:01,475 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-05-27T21:25:01,476 copying MDAnalysis/analysis/hole2/templates.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-05-27T21:25:01,478 copying MDAnalysis/analysis/hole2/hole.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-05-27T21:25:01,481 copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-05-27T21:25:01,483 copying MDAnalysis/analysis/hole2/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-05-27T21:25:01,486 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy 2023-05-27T21:25:01,487 copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy 2023-05-27T21:25:01,490 copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy 2023-05-27T21:25:01,492 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:25:01,493 copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:25:01,498 copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:25:01,500 copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:25:01,503 copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:25:01,505 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-05-27T21:25:01,506 copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-05-27T21:25:01,508 copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-05-27T21:25:01,510 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds 2023-05-27T21:25:01,511 copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds 2023-05-27T21:25:01,513 copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds 2023-05-27T21:25:01,515 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:25:01,516 copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:25:01,518 copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:25:01,520 copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:25:01,522 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-05-27T21:25:01,523 copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-05-27T21:25:01,526 copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-05-27T21:25:01,528 copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-05-27T21:25:01,530 copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-05-27T21:25:01,532 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-05-27T21:25:01,533 copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-05-27T21:25:01,535 copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-05-27T21:25:01,537 copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-05-27T21:25:01,539 copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-05-27T21:25:01,542 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:01,543 copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:01,545 running egg_info 2023-05-27T21:25:01,556 writing MDAnalysis.egg-info/PKG-INFO 2023-05-27T21:25:01,559 writing dependency_links to MDAnalysis.egg-info/dependency_links.txt 2023-05-27T21:25:01,561 writing requirements to MDAnalysis.egg-info/requires.txt 2023-05-27T21:25:01,562 writing top-level names to MDAnalysis.egg-info/top_level.txt 2023-05-27T21:25:01,591 reading manifest file 'MDAnalysis.egg-info/SOURCES.txt' 2023-05-27T21:25:01,603 reading manifest template 'MANIFEST.in' 2023-05-27T21:25:01,773 warning: no previously-included files matching 'doc/html/html' found anywhere in distribution 2023-05-27T21:25:01,775 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-05-27T21:25:01,778 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-05-27T21:25:01,780 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2023-05-27T21:25:01,782 warning: no previously-included files matching '*~' found anywhere in distribution 2023-05-27T21:25:01,784 warning: no previously-included files matching '.git' found anywhere in distribution 2023-05-27T21:25:01,785 adding license file 'LICENSE' 2023-05-27T21:25:01,785 adding license file 'AUTHORS' 2023-05-27T21:25:01,809 writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' 2023-05-27T21:25:01,813 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.analysis.encore.clustering.include' is absent from the `packages` configuration. 2023-05-27T21:25:01,813 !! 2023-05-27T21:25:01,813 ******************************************************************************** 2023-05-27T21:25:01,813 ############################ 2023-05-27T21:25:01,813 # Package would be ignored # 2023-05-27T21:25:01,813 ############################ 2023-05-27T21:25:01,814 Python recognizes 'MDAnalysis.analysis.encore.clustering.include' as an importable package[^1], 2023-05-27T21:25:01,814 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,814 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,814 package, please make sure that 'MDAnalysis.analysis.encore.clustering.include' is explicitly added 2023-05-27T21:25:01,814 to the `packages` configuration field. 2023-05-27T21:25:01,814 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,815 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,815 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,815 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,815 If you don't want 'MDAnalysis.analysis.encore.clustering.include' to be distributed and are 2023-05-27T21:25:01,815 already explicitly excluding 'MDAnalysis.analysis.encore.clustering.include' via 2023-05-27T21:25:01,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,816 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,816 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,816 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,816 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,817 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,817 even if it does not contain any `.py` files. 2023-05-27T21:25:01,817 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,817 directory, all directories are treated like packages. 2023-05-27T21:25:01,817 ******************************************************************************** 2023-05-27T21:25:01,817 !! 2023-05-27T21:25:01,817 check.warn(importable) 2023-05-27T21:25:01,818 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.analysis.encore.clustering.src' is absent from the `packages` configuration. 2023-05-27T21:25:01,818 !! 2023-05-27T21:25:01,818 ******************************************************************************** 2023-05-27T21:25:01,818 ############################ 2023-05-27T21:25:01,818 # Package would be ignored # 2023-05-27T21:25:01,818 ############################ 2023-05-27T21:25:01,818 Python recognizes 'MDAnalysis.analysis.encore.clustering.src' as an importable package[^1], 2023-05-27T21:25:01,819 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,819 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,819 package, please make sure that 'MDAnalysis.analysis.encore.clustering.src' is explicitly added 2023-05-27T21:25:01,819 to the `packages` configuration field. 2023-05-27T21:25:01,819 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,819 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,819 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,820 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,820 If you don't want 'MDAnalysis.analysis.encore.clustering.src' to be distributed and are 2023-05-27T21:25:01,820 already explicitly excluding 'MDAnalysis.analysis.encore.clustering.src' via 2023-05-27T21:25:01,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,821 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,821 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,821 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,821 even if it does not contain any `.py` files. 2023-05-27T21:25:01,822 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,822 directory, all directories are treated like packages. 2023-05-27T21:25:01,822 ******************************************************************************** 2023-05-27T21:25:01,822 !! 2023-05-27T21:25:01,822 check.warn(importable) 2023-05-27T21:25:01,822 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is absent from the `packages` configuration. 2023-05-27T21:25:01,822 !! 2023-05-27T21:25:01,823 ******************************************************************************** 2023-05-27T21:25:01,823 ############################ 2023-05-27T21:25:01,823 # Package would be ignored # 2023-05-27T21:25:01,823 ############################ 2023-05-27T21:25:01,823 Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.include' as an importable package[^1], 2023-05-27T21:25:01,823 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,823 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,823 package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is explicitly added 2023-05-27T21:25:01,824 to the `packages` configuration field. 2023-05-27T21:25:01,824 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,824 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,824 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,824 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,824 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,825 If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.include' to be distributed and are 2023-05-27T21:25:01,825 already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.include' via 2023-05-27T21:25:01,825 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,825 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,825 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,825 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,825 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,826 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,826 even if it does not contain any `.py` files. 2023-05-27T21:25:01,826 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,826 directory, all directories are treated like packages. 2023-05-27T21:25:01,826 ******************************************************************************** 2023-05-27T21:25:01,826 !! 2023-05-27T21:25:01,827 check.warn(importable) 2023-05-27T21:25:01,827 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is absent from the `packages` configuration. 2023-05-27T21:25:01,827 !! 2023-05-27T21:25:01,827 ******************************************************************************** 2023-05-27T21:25:01,827 ############################ 2023-05-27T21:25:01,827 # Package would be ignored # 2023-05-27T21:25:01,827 ############################ 2023-05-27T21:25:01,827 Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.src' as an importable package[^1], 2023-05-27T21:25:01,828 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,828 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,828 package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is explicitly added 2023-05-27T21:25:01,828 to the `packages` configuration field. 2023-05-27T21:25:01,828 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,828 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,829 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,829 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,829 If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.src' to be distributed and are 2023-05-27T21:25:01,829 already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.src' via 2023-05-27T21:25:01,829 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,829 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,829 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,830 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,830 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,830 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,830 even if it does not contain any `.py` files. 2023-05-27T21:25:01,830 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,831 directory, all directories are treated like packages. 2023-05-27T21:25:01,831 ******************************************************************************** 2023-05-27T21:25:01,831 !! 2023-05-27T21:25:01,831 check.warn(importable) 2023-05-27T21:25:01,831 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.lib.formats.include' is absent from the `packages` configuration. 2023-05-27T21:25:01,831 !! 2023-05-27T21:25:01,831 ******************************************************************************** 2023-05-27T21:25:01,832 ############################ 2023-05-27T21:25:01,832 # Package would be ignored # 2023-05-27T21:25:01,832 ############################ 2023-05-27T21:25:01,832 Python recognizes 'MDAnalysis.lib.formats.include' as an importable package[^1], 2023-05-27T21:25:01,832 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,832 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,832 package, please make sure that 'MDAnalysis.lib.formats.include' is explicitly added 2023-05-27T21:25:01,832 to the `packages` configuration field. 2023-05-27T21:25:01,833 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,833 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,833 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,833 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,833 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,834 If you don't want 'MDAnalysis.lib.formats.include' to be distributed and are 2023-05-27T21:25:01,834 already explicitly excluding 'MDAnalysis.lib.formats.include' via 2023-05-27T21:25:01,834 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,834 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,834 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,834 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,835 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,835 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,835 even if it does not contain any `.py` files. 2023-05-27T21:25:01,835 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,835 directory, all directories are treated like packages. 2023-05-27T21:25:01,835 ******************************************************************************** 2023-05-27T21:25:01,836 !! 2023-05-27T21:25:01,836 check.warn(importable) 2023-05-27T21:25:01,836 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.lib.formats.src' is absent from the `packages` configuration. 2023-05-27T21:25:01,836 !! 2023-05-27T21:25:01,836 ******************************************************************************** 2023-05-27T21:25:01,836 ############################ 2023-05-27T21:25:01,836 # Package would be ignored # 2023-05-27T21:25:01,836 ############################ 2023-05-27T21:25:01,837 Python recognizes 'MDAnalysis.lib.formats.src' as an importable package[^1], 2023-05-27T21:25:01,837 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,837 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,837 package, please make sure that 'MDAnalysis.lib.formats.src' is explicitly added 2023-05-27T21:25:01,837 to the `packages` configuration field. 2023-05-27T21:25:01,837 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,837 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,838 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,838 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,838 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,838 If you don't want 'MDAnalysis.lib.formats.src' to be distributed and are 2023-05-27T21:25:01,838 already explicitly excluding 'MDAnalysis.lib.formats.src' via 2023-05-27T21:25:01,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,839 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,839 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,839 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,840 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,840 even if it does not contain any `.py` files. 2023-05-27T21:25:01,840 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,840 directory, all directories are treated like packages. 2023-05-27T21:25:01,840 ******************************************************************************** 2023-05-27T21:25:01,841 !! 2023-05-27T21:25:01,841 check.warn(importable) 2023-05-27T21:25:01,841 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.lib.include' is absent from the `packages` configuration. 2023-05-27T21:25:01,841 !! 2023-05-27T21:25:01,841 ******************************************************************************** 2023-05-27T21:25:01,841 ############################ 2023-05-27T21:25:01,841 # Package would be ignored # 2023-05-27T21:25:01,842 ############################ 2023-05-27T21:25:01,842 Python recognizes 'MDAnalysis.lib.include' as an importable package[^1], 2023-05-27T21:25:01,842 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,842 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,842 package, please make sure that 'MDAnalysis.lib.include' is explicitly added 2023-05-27T21:25:01,842 to the `packages` configuration field. 2023-05-27T21:25:01,843 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,843 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,843 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,843 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,843 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,844 If you don't want 'MDAnalysis.lib.include' to be distributed and are 2023-05-27T21:25:01,844 already explicitly excluding 'MDAnalysis.lib.include' via 2023-05-27T21:25:01,844 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,844 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,844 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,844 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,845 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,845 even if it does not contain any `.py` files. 2023-05-27T21:25:01,845 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,846 directory, all directories are treated like packages. 2023-05-27T21:25:01,846 ******************************************************************************** 2023-05-27T21:25:01,846 !! 2023-05-27T21:25:01,846 check.warn(importable) 2023-05-27T21:25:01,846 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.lib.libmdanalysis' is absent from the `packages` configuration. 2023-05-27T21:25:01,846 !! 2023-05-27T21:25:01,847 ******************************************************************************** 2023-05-27T21:25:01,847 ############################ 2023-05-27T21:25:01,847 # Package would be ignored # 2023-05-27T21:25:01,847 ############################ 2023-05-27T21:25:01,847 Python recognizes 'MDAnalysis.lib.libmdanalysis' as an importable package[^1], 2023-05-27T21:25:01,847 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,847 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,848 package, please make sure that 'MDAnalysis.lib.libmdanalysis' is explicitly added 2023-05-27T21:25:01,848 to the `packages` configuration field. 2023-05-27T21:25:01,848 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,848 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,848 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,848 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,849 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,849 If you don't want 'MDAnalysis.lib.libmdanalysis' to be distributed and are 2023-05-27T21:25:01,849 already explicitly excluding 'MDAnalysis.lib.libmdanalysis' via 2023-05-27T21:25:01,849 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,849 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,849 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,850 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,850 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,850 even if it does not contain any `.py` files. 2023-05-27T21:25:01,850 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,850 directory, all directories are treated like packages. 2023-05-27T21:25:01,851 ******************************************************************************** 2023-05-27T21:25:01,851 !! 2023-05-27T21:25:01,851 check.warn(importable) 2023-05-27T21:25:01,851 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'MDAnalysis.lib.src.transformations' is absent from the `packages` configuration. 2023-05-27T21:25:01,851 !! 2023-05-27T21:25:01,852 ******************************************************************************** 2023-05-27T21:25:01,852 ############################ 2023-05-27T21:25:01,852 # Package would be ignored # 2023-05-27T21:25:01,852 ############################ 2023-05-27T21:25:01,852 Python recognizes 'MDAnalysis.lib.src.transformations' as an importable package[^1], 2023-05-27T21:25:01,852 but it is absent from setuptools' `packages` configuration. 2023-05-27T21:25:01,852 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-27T21:25:01,853 package, please make sure that 'MDAnalysis.lib.src.transformations' is explicitly added 2023-05-27T21:25:01,853 to the `packages` configuration field. 2023-05-27T21:25:01,853 Alternatively, you can also rely on setuptools' discovery methods 2023-05-27T21:25:01,853 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-27T21:25:01,853 instead of `find_packages(...)`/`find:`). 2023-05-27T21:25:01,853 You can read more about "package discovery" on setuptools documentation page: 2023-05-27T21:25:01,854 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-27T21:25:01,854 If you don't want 'MDAnalysis.lib.src.transformations' to be distributed and are 2023-05-27T21:25:01,854 already explicitly excluding 'MDAnalysis.lib.src.transformations' via 2023-05-27T21:25:01,854 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-27T21:25:01,855 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-27T21:25:01,855 combination with a more fine grained `package-data` configuration. 2023-05-27T21:25:01,855 You can read more about "package data files" on setuptools documentation page: 2023-05-27T21:25:01,855 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-27T21:25:01,856 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-27T21:25:01,856 even if it does not contain any `.py` files. 2023-05-27T21:25:01,856 On the other hand, currently there is no concept of package data 2023-05-27T21:25:01,856 directory, all directories are treated like packages. 2023-05-27T21:25:01,856 ******************************************************************************** 2023-05-27T21:25:01,856 !! 2023-05-27T21:25:01,857 check.warn(importable) 2023-05-27T21:25:01,857 copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-05-27T21:25:01,857 copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-05-27T21:25:01,857 copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,868 copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,870 copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:25:01,872 copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,897 copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,900 copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,926 copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,928 copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,930 copying MDAnalysis/lib/c_distances.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,952 copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,954 copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,962 copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,965 copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,988 copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,990 copying MDAnalysis/lib/qcprot.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:01,999 copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:02,002 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include 2023-05-27T21:25:02,003 copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include 2023-05-27T21:25:02,006 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis 2023-05-27T21:25:02,007 copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis 2023-05-27T21:25:02,009 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src 2023-05-27T21:25:02,010 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-05-27T21:25:02,011 copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-05-27T21:25:02,014 copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-05-27T21:25:02,016 copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-05-27T21:25:02,021 copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:02,029 copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:25:02,032 copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:25:02,041 copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:25:02,043 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include 2023-05-27T21:25:02,044 copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include 2023-05-27T21:25:02,047 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-05-27T21:25:02,048 copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-05-27T21:25:02,051 copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-05-27T21:25:02,062 copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-05-27T21:25:02,065 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include 2023-05-27T21:25:02,066 copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include 2023-05-27T21:25:02,069 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src 2023-05-27T21:25:02,070 copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src 2023-05-27T21:25:02,073 copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,095 copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,097 copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,100 copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,130 copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,133 copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,135 copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,156 copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,158 copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,160 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,161 copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,163 copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,166 copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,168 copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,170 copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,173 copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,175 copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,177 copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-05-27T21:25:02,179 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-05-27T21:25:02,180 copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-05-27T21:25:02,182 copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-05-27T21:25:02,186 copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-05-27T21:25:02,188 copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-05-27T21:25:02,191 copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-05-27T21:25:02,208 running build_ext 2023-05-27T21:25:02,209 building 'MDAnalysis.lib.formats.libdcd' extension 2023-05-27T21:25:02,210 creating build/temp.linux-armv7l-cpython-39 2023-05-27T21:25:02,210 creating build/temp.linux-armv7l-cpython-39/MDAnalysis 2023-05-27T21:25:02,211 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib 2023-05-27T21:25:02,211 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-05-27T21:25:02,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:25:02,240 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:25:02,555 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:25:02,555 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:25:02,556 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:25:02,556 from MDAnalysis/lib/formats/libdcd.c:785: 2023-05-27T21:25:02,556 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:25:02,556 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:25:02,556 | ^~~~~~~ 2023-05-27T21:25:02,615 In file included from MDAnalysis/lib/formats/libdcd.c:795: 2023-05-27T21:25:02,615 MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’: 2023-05-27T21:25:02,615 MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-27T21:25:02,616 562 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; 2023-05-27T21:25:02,616 | ^~ 2023-05-27T21:25:02,618 MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’: 2023-05-27T21:25:02,618 MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable] 2023-05-27T21:25:02,618 698 | struct tm *tmbuf; 2023-05-27T21:25:02,618 | ^~~~~ 2023-05-27T21:25:02,619 MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable] 2023-05-27T21:25:02,619 697 | time_t cur_time; 2023-05-27T21:25:02,619 | ^~~~~~~~ 2023-05-27T21:25:04,350 In file included from MDAnalysis/lib/formats/include/readdcd.h:25, 2023-05-27T21:25:04,350 from MDAnalysis/lib/formats/libdcd.c:795: 2023-05-27T21:25:04,350 At top level: 2023-05-27T21:25:04,350 MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 2023-05-27T21:25:04,351 96 | static void swap2_aligned(void *v, long ndata) { 2023-05-27T21:25:04,351 | ^~~~~~~~~~~~~ 2023-05-27T21:25:04,351 MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 2023-05-27T21:25:04,351 32 | static void swap2_unaligned(void *v, long ndata) { 2023-05-27T21:25:04,351 | ^~~~~~~~~~~~~~~ 2023-05-27T21:25:04,352 In file included from MDAnalysis/lib/formats/libdcd.c:794: 2023-05-27T21:25:04,352 MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] 2023-05-27T21:25:04,352 453 | static int fio_write_str(fio_fd fd, const char *str) { 2023-05-27T21:25:04,352 | ^~~~~~~~~~~~~ 2023-05-27T21:25:04,352 MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] 2023-05-27T21:25:04,352 449 | static int fio_read_int32(fio_fd fd, int *i) { 2023-05-27T21:25:04,352 | ^~~~~~~~~~~~~~ 2023-05-27T21:25:34,912 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:25:35,104 building 'MDAnalysis.lib.c_distances' extension 2023-05-27T21:25:35,105 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:25:35,134 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:25:35,679 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:25:35,679 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:25:35,680 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:25:35,680 from MDAnalysis/lib/c_distances.c:785: 2023-05-27T21:25:35,680 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:25:35,680 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:25:35,680 | ^~~~~~~ 2023-05-27T21:26:05,934 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:26:06,137 building 'MDAnalysis.lib.c_distances_openmp' extension 2023-05-27T21:26:06,138 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPARALLEL -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:26:06,164 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:26:06,450 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:26:06,450 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:26:06,450 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:26:06,451 from MDAnalysis/lib/c_distances_openmp.c:796: 2023-05-27T21:26:06,451 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:26:06,451 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:26:06,451 | ^~~~~~~ 2023-05-27T21:26:12,183 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.o -L/usr/lib -lm -lgomp -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so -fopenmp 2023-05-27T21:26:12,321 building 'MDAnalysis.lib.qcprot' extension 2023-05-27T21:26:12,322 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:26:12,345 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:26:12,656 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:26:12,656 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:26:12,656 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:26:12,656 from MDAnalysis/lib/qcprot.c:779: 2023-05-27T21:26:12,656 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:26:12,656 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:26:12,657 | ^~~~~~~ 2023-05-27T21:26:12,710 MDAnalysis/lib/qcprot.c: In function ‘__pyx_pf_10MDAnalysis_3lib_6qcprot_InnerProduct’: 2023-05-27T21:26:12,710 MDAnalysis/lib/qcprot.c:2395:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:12,711 2395 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { 2023-05-27T21:26:12,711 | ^ 2023-05-27T21:26:12,714 MDAnalysis/lib/qcprot.c:2603:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:12,714 2603 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { 2023-05-27T21:26:12,714 | ^ 2023-05-27T21:26:18,550 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:26:18,666 building 'MDAnalysis.lib._transformations' extension 2023-05-27T21:26:18,667 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src 2023-05-27T21:26:18,668 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-05-27T21:26:18,669 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:26:18,692 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:26:18,973 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:26:18,974 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:26:18,974 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:26:18,974 from MDAnalysis/lib/src/transformations/transformations.c:73: 2023-05-27T21:26:18,974 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:26:18,974 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:26:18,975 | ^~~~~~~ 2023-05-27T21:26:19,035 MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’: 2023-05-27T21:26:19,035 MDAnalysis/lib/src/transformations/transformations.c:1845: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,035 1845 | #pragma vector always 2023-05-27T21:26:19,035 | 2023-05-27T21:26:19,037 MDAnalysis/lib/src/transformations/transformations.c:1962: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,037 1962 | #pragma vector always 2023-05-27T21:26:19,038 | 2023-05-27T21:26:19,038 MDAnalysis/lib/src/transformations/transformations.c:1986: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,038 1986 | #pragma vector always 2023-05-27T21:26:19,038 | 2023-05-27T21:26:19,042 MDAnalysis/lib/src/transformations/transformations.c: In function ‘axis2tuple’: 2023-05-27T21:26:19,043 MDAnalysis/lib/src/transformations/transformations.c:2122:5: warning: ‘PyUnicode_GetSize’ is deprecated [-Wdeprecated-declarations] 2023-05-27T21:26:19,043 2122 | if (PyUnicode_Check(axes) && (PyUnicode_GetSize(axes) == 4)) { 2023-05-27T21:26:19,043 | ^~ 2023-05-27T21:26:19,043 In file included from /usr/include/python3.9/Python.h:97, 2023-05-27T21:26:19,043 from MDAnalysis/lib/src/transformations/transformations.c:68: 2023-05-27T21:26:19,044 /usr/include/python3.9/unicodeobject.h:177:43: note: declared here 2023-05-27T21:26:19,044 177 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_ssize_t) PyUnicode_GetSize( 2023-05-27T21:26:19,044 | ^~~~~~~~~~~~~~~~~ 2023-05-27T21:26:19,078 MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’: 2023-05-27T21:26:19,079 MDAnalysis/lib/src/transformations/transformations.c:3427: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,079 3427 | #pragma vector always 2023-05-27T21:26:19,079 | 2023-05-27T21:26:19,081 MDAnalysis/lib/src/transformations/transformations.c:3508: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,082 3508 | #pragma vector always 2023-05-27T21:26:19,082 | 2023-05-27T21:26:19,087 MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’: 2023-05-27T21:26:19,087 MDAnalysis/lib/src/transformations/transformations.c:3610: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,087 3610 | #pragma vector always 2023-05-27T21:26:19,087 | 2023-05-27T21:26:19,087 MDAnalysis/lib/src/transformations/transformations.c:3615: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,088 3615 | #pragma vector always 2023-05-27T21:26:19,088 | 2023-05-27T21:26:19,091 MDAnalysis/lib/src/transformations/transformations.c:3679: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,091 3679 | #pragma vector always 2023-05-27T21:26:19,091 | 2023-05-27T21:26:19,092 MDAnalysis/lib/src/transformations/transformations.c:3684: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-05-27T21:26:19,092 3684 | #pragma vector always 2023-05-27T21:26:19,092 | 2023-05-27T21:26:19,160 At top level: 2023-05-27T21:26:19,160 MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function] 2023-05-27T21:26:19,160 910 | PyConverter_DoubleVector4Copy( 2023-05-27T21:26:19,161 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:26:19,161 MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function] 2023-05-27T21:26:19,161 804 | PyConverter_DoubleArrayOrNone( 2023-05-27T21:26:19,161 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:26:19,161 MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function] 2023-05-27T21:26:19,161 774 | PyConverter_DoubleArray( 2023-05-27T21:26:19,161 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:26:24,896 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:26:25,023 building 'MDAnalysis.lib.formats.libmdaxdr' extension 2023-05-27T21:26:25,024 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-05-27T21:26:25,026 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:26:25,056 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:26:25,341 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:26:25,341 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:26:25,342 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:26:25,342 from MDAnalysis/lib/formats/libmdaxdr.c:806: 2023-05-27T21:26:25,342 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:26:25,342 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:26:25,342 | ^~~~~~~ 2023-05-27T21:26:25,375 In file included from MDAnalysis/lib/formats/libmdaxdr.c:815: 2023-05-27T21:26:25,375 MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:26:25,376 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:26:25,376 | 2023-05-27T21:26:25,377 In file included from MDAnalysis/lib/formats/libmdaxdr.c:816: 2023-05-27T21:26:25,377 MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:26:25,377 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:26:25,377 | 2023-05-27T21:26:25,377 In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, 2023-05-27T21:26:25,378 from MDAnalysis/lib/formats/libmdaxdr.c:816: 2023-05-27T21:26:25,378 MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:26:25,378 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:26:25,378 | 2023-05-27T21:26:25,378 In file included from MDAnalysis/lib/formats/libmdaxdr.c:817: 2023-05-27T21:26:25,378 MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:26:25,379 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:26:25,379 | 2023-05-27T21:26:57,143 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:26:57,169 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:26:57,218 In file included from MDAnalysis/lib/formats/src/trr_seek.c:30: 2023-05-27T21:26:57,218 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:26:57,218 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:26:57,219 | 2023-05-27T21:26:57,222 In file included from MDAnalysis/lib/formats/src/trr_seek.c:31: 2023-05-27T21:26:57,223 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:26:57,223 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:26:57,223 | 2023-05-27T21:26:57,223 In file included from /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile_trr.h:42, 2023-05-27T21:26:57,223 from MDAnalysis/lib/formats/src/trr_seek.c:31: 2023-05-27T21:26:57,223 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:26:57,224 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:26:57,224 | 2023-05-27T21:26:57,226 MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’: 2023-05-27T21:26:57,226 MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable] 2023-05-27T21:26:57,227 39 | int result, framebytes, totalframebytes; 2023-05-27T21:26:57,227 | ^~~~~~~~~~~~~~~ 2023-05-27T21:26:57,227 MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable] 2023-05-27T21:26:57,227 38 | float time, lambda; 2023-05-27T21:26:57,227 | ^~~~~~ 2023-05-27T21:26:57,227 MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable] 2023-05-27T21:26:57,228 38 | float time, lambda; 2023-05-27T21:26:57,228 | ^~~~ 2023-05-27T21:26:57,328 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:26:57,352 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:26:57,441 In file included from MDAnalysis/lib/formats/src/xdrfile.c:62: 2023-05-27T21:26:57,441 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:26:57,441 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:26:57,442 | 2023-05-27T21:26:57,450 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’: 2023-05-27T21:26:57,450 MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-27T21:26:57,450 501 | while (size >= num && num_of_bits < 32) 2023-05-27T21:26:57,450 | ^~ 2023-05-27T21:26:57,450 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’: 2023-05-27T21:26:57,451 MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:57,451 547 | while (bytes[num_of_bytes] >= num) 2023-05-27T21:26:57,451 | ^~ 2023-05-27T21:26:57,451 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’: 2023-05-27T21:26:57,452 MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-27T21:26:57,452 656 | if (num_of_bits >= num_of_bytes * 8) 2023-05-27T21:26:57,452 | ^~ 2023-05-27T21:26:57,452 MDAnalysis/lib/formats/src/xdrfile.c:658:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-27T21:26:57,452 658 | for (i = 0; i < num_of_bytes; i++) 2023-05-27T21:26:57,452 | ^ 2023-05-27T21:26:57,453 MDAnalysis/lib/formats/src/xdrfile.c:666:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-27T21:26:57,453 666 | for (i = 0; i < num_of_bytes-1; i++) 2023-05-27T21:26:57,453 | ^ 2023-05-27T21:26:57,453 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’: 2023-05-27T21:26:57,453 MDAnalysis/lib/formats/src/xdrfile.c:706:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:57,453 706 | if (lastbits < num_of_bits) 2023-05-27T21:26:57,453 | ^ 2023-05-27T21:26:57,455 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-05-27T21:26:57,455 MDAnalysis/lib/formats/src/xdrfile.c:816:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:57,455 816 | if(size3>xfp->buf1size) 2023-05-27T21:26:57,455 | ^ 2023-05-27T21:26:57,456 MDAnalysis/lib/formats/src/xdrfile.c:868:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:57,457 868 | maxidx = (LASTIDXxfp->buf1size) 2023-05-27T21:26:57,461 | ^ 2023-05-27T21:26:57,465 MDAnalysis/lib/formats/src/xdrfile.c:1135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-27T21:26:57,465 1135 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-05-27T21:26:57,465 | ^ 2023-05-27T21:26:57,465 MDAnalysis/lib/formats/src/xdrfile.c:1141:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:57,465 1141 | maxidx = (LASTIDXxfp->buf1size) 2023-05-27T21:26:57,471 | ^ 2023-05-27T21:26:57,472 MDAnalysis/lib/formats/src/xdrfile.c:1368:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:57,472 1368 | maxidx = (LASTIDXxfp->buf1size) { 2023-05-27T21:26:57,478 | ^ 2023-05-27T21:26:57,484 MDAnalysis/lib/formats/src/xdrfile.c:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-05-27T21:26:57,484 1619 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-05-27T21:26:57,484 | ^ 2023-05-27T21:26:57,484 MDAnalysis/lib/formats/src/xdrfile.c:1624:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-05-27T21:26:57,485 1624 | maxidx = (LASTIDX maxsize) 2023-05-27T21:26:59,143 | ^ 2023-05-27T21:26:59,144 MDAnalysis/lib/formats/src/xdrfile.c:2335:15: note: ‘size’ was declared here 2023-05-27T21:26:59,144 2335 | unsigned int size; 2023-05-27T21:26:59,144 | ^~~~ 2023-05-27T21:26:59,575 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’: 2023-05-27T21:26:59,576 MDAnalysis/lib/formats/src/xdrfile.c:1157:21: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-27T21:26:59,576 1157 | abs(thiscoord[2] - prevcoord[2]) < larger) { 2023-05-27T21:26:59,576 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-05-27T21:26:59,576 MDAnalysis/lib/formats/src/xdrfile.c:1156:21: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-27T21:26:59,576 1156 | abs(thiscoord[1] - prevcoord[1]) < larger && 2023-05-27T21:26:59,577 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-05-27T21:26:59,577 MDAnalysis/lib/formats/src/xdrfile.c:1155:21: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-27T21:26:59,577 1155 | abs(thiscoord[0] - prevcoord[0]) < larger && 2023-05-27T21:26:59,577 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-05-27T21:27:00,332 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’: 2023-05-27T21:27:00,333 MDAnalysis/lib/formats/src/xdrfile.c:1639:21: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-27T21:27:00,333 1639 | abs(thiscoord[2] - prevcoord[2]) < larger) { 2023-05-27T21:27:00,333 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-05-27T21:27:00,334 MDAnalysis/lib/formats/src/xdrfile.c:1638:21: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-27T21:27:00,334 1638 | abs(thiscoord[1] - prevcoord[1]) < larger && 2023-05-27T21:27:00,334 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-05-27T21:27:00,335 MDAnalysis/lib/formats/src/xdrfile.c:1637:21: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-05-27T21:27:00,335 1637 | abs(thiscoord[0] - prevcoord[0]) < larger && 2023-05-27T21:27:00,335 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-05-27T21:27:01,345 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:27:01,367 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:01,413 In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38: 2023-05-27T21:27:01,413 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:01,413 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:01,414 | 2023-05-27T21:27:01,417 In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39: 2023-05-27T21:27:01,417 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:01,417 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:01,418 | 2023-05-27T21:27:01,418 In file included from /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile_trr.h:42, 2023-05-27T21:27:01,418 from MDAnalysis/lib/formats/src/xdrfile_trr.c:39: 2023-05-27T21:27:01,418 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:01,418 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:01,418 | 2023-05-27T21:27:01,419 MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’: 2023-05-27T21:27:01,419 MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-27T21:27:01,420 78 | if (slen != strlen(version) + 1) 2023-05-27T21:27:01,420 | ^~ 2023-05-27T21:27:01,420 MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-05-27T21:27:01,420 86 | if (xdrfile_write_string(version, xd) != (strlen(version) + 1)) 2023-05-27T21:27:01,420 | ^~ 2023-05-27T21:27:01,435 MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’: 2023-05-27T21:27:01,435 MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized in this function [-Wuninitialized] 2023-05-27T21:27:01,435 408 | return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder); 2023-05-27T21:27:01,436 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:02,544 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:27:02,566 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:02,589 In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30: 2023-05-27T21:27:02,589 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:02,590 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:02,590 | 2023-05-27T21:27:02,600 In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31: 2023-05-27T21:27:02,600 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:02,600 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:02,600 | 2023-05-27T21:27:02,601 In file included from /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, 2023-05-27T21:27:02,601 from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31: 2023-05-27T21:27:02,601 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:02,601 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:02,601 | 2023-05-27T21:27:02,717 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:27:02,739 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:02,761 In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25: 2023-05-27T21:27:02,761 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:02,761 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:02,761 | 2023-05-27T21:27:02,771 In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26: 2023-05-27T21:27:02,771 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:02,771 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:02,771 | 2023-05-27T21:27:02,772 In file included from /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, 2023-05-27T21:27:02,772 from MDAnalysis/lib/formats/src/xtc_seek.c:26: 2023-05-27T21:27:02,772 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-05-27T21:27:02,772 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-05-27T21:27:02,772 | 2023-05-27T21:27:02,922 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:27:03,127 building 'MDAnalysis.lib.formats.cython_util' extension 2023-05-27T21:27:03,128 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros 2023-05-27T21:27:03,152 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:03,465 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:27:03,466 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:27:03,466 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:27:03,466 from MDAnalysis/lib/formats/cython_util.c:779: 2023-05-27T21:27:03,466 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:27:03,466 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:27:03,467 | ^~~~~~~ 2023-05-27T21:27:20,166 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:27:20,318 building 'MDAnalysis.analysis.encore.cutils' extension 2023-05-27T21:27:20,319 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-05-27T21:27:20,319 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-05-27T21:27:20,320 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 2023-05-27T21:27:20,346 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:20,633 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:27:20,634 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:27:20,634 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:27:20,634 from MDAnalysis/analysis/encore/cutils.c:779: 2023-05-27T21:27:20,634 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:27:20,634 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:27:20,635 | ^~~~~~~ 2023-05-27T21:27:23,226 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:27:23,333 building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension 2023-05-27T21:27:23,334 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-05-27T21:27:23,335 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src 2023-05-27T21:27:23,336 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 2023-05-27T21:27:23,361 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:23,651 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:27:23,652 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:27:23,652 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:27:23,652 from MDAnalysis/analysis/encore/clustering/affinityprop.c:785: 2023-05-27T21:27:23,652 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:27:23,652 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:27:23,652 | ^~~~~~~ 2023-05-27T21:27:34,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 2023-05-27T21:27:34,076 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:35,084 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:27:35,210 building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension 2023-05-27T21:27:35,211 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:27:35,211 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-05-27T21:27:35,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 2023-05-27T21:27:35,235 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:35,898 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 2023-05-27T21:27:35,921 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:36,211 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:27:36,211 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:27:36,212 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:27:36,212 from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:785: 2023-05-27T21:27:36,212 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:27:36,212 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:27:36,212 | ^~~~~~~ 2023-05-27T21:27:40,599 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:27:40,720 building 'MDAnalysis.lib._cutil' extension 2023-05-27T21:27:40,721 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 2023-05-27T21:27:40,749 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:27:41,020 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:27:41,021 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:27:41,021 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:27:41,021 from MDAnalysis/lib/_cutil.cpp:799: 2023-05-27T21:27:41,021 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:27:41,021 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:27:41,022 | ^~~~~~~ 2023-05-27T21:27:43,827 In file included from MDAnalysis/lib/_cutil.cpp:828: 2023-05-27T21:27:43,827 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,827 827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,828 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,828 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,828 791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,828 | ^~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,828 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,828 764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,829 | ^~~~~~~~~~~~~~ 2023-05-27T21:27:43,829 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,829 689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,829 | ^~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,829 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,829 647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,830 | ^~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,830 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,830 618 | static void _calc_angle(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,830 | ^~~~~~~~~~~ 2023-05-27T21:27:43,830 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,831 596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,831 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,831 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,831 573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,831 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,831 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,831 557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2, 2023-05-27T21:27:43,831 | ^~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,832 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,832 505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref, 2023-05-27T21:27:43,832 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,832 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,832 472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref, 2023-05-27T21:27:43,832 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,832 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,833 448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref, 2023-05-27T21:27:43,833 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,833 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,833 424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref, 2023-05-27T21:27:43,833 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,833 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,833 399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf, 2023-05-27T21:27:43,833 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,834 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,834 381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf, 2023-05-27T21:27:43,834 | ^~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:27:43,834 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:116:13: warning: ‘void _ortho_pbc(float (*)[3], uint64_t, float*)’ defined but not used [-Wunused-function] 2023-05-27T21:27:43,834 116 | static void _ortho_pbc(coordinate* coords, uint64_t numcoords, float* box) 2023-05-27T21:27:43,834 | ^~~~~~~~~~ 2023-05-27T21:28:10,195 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:28:10,541 building 'MDAnalysis.lib._augment' extension 2023-05-27T21:28:10,542 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 2023-05-27T21:28:10,569 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:28:10,773 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:28:10,773 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:28:10,773 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:28:10,774 from MDAnalysis/lib/_augment.cpp:794: 2023-05-27T21:28:10,774 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:28:10,774 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:28:10,774 | ^~~~~~~ 2023-05-27T21:28:36,146 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:28:36,452 building 'MDAnalysis.lib.nsgrid' extension 2023-05-27T21:28:36,453 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 2023-05-27T21:28:36,480 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:28:38,836 In file included from MDAnalysis/lib/nsgrid.cpp:795: 2023-05-27T21:28:38,837 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,837 827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,837 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,837 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,837 791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,837 | ^~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,838 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,838 764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,838 | ^~~~~~~~~~~~~~ 2023-05-27T21:28:38,838 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,838 689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,838 | ^~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,839 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,839 647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,839 | ^~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,839 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,839 618 | static void _calc_angle(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,839 | ^~~~~~~~~~~ 2023-05-27T21:28:38,840 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,840 596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,840 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,840 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,840 573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,840 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,841 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,841 557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2, 2023-05-27T21:28:38,841 | ^~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,841 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,841 505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref, 2023-05-27T21:28:38,841 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,841 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,842 472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref, 2023-05-27T21:28:38,842 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,842 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,842 448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref, 2023-05-27T21:28:38,842 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,842 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,842 424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref, 2023-05-27T21:28:38,843 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,843 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,843 399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf, 2023-05-27T21:28:38,843 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:28:38,843 /tmp/pip-wheel-06uqvwdr/mdanalysis_64f77e8c20394c498d08303e6a07360a/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-05-27T21:28:38,843 381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf, 2023-05-27T21:28:38,844 | ^~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:29:01,278 In file included from /usr/include/c++/10/vector:72, 2023-05-27T21:29:01,279 from MDAnalysis/lib/nsgrid.cpp:793: 2023-05-27T21:29:01,279 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-05-27T21:29:01,279 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-05-27T21:29:01,279 426 | vector<_Tp, _Alloc>:: 2023-05-27T21:29:01,279 | ^~~~~~~~~~~~~~~~~~~ 2023-05-27T21:29:01,316 In file included from /usr/include/c++/10/vector:67, 2023-05-27T21:29:01,316 from MDAnalysis/lib/nsgrid.cpp:793: 2023-05-27T21:29:01,317 /usr/include/c++/10/bits/stl_vector.h: In function ‘void __pyx_f_10MDAnalysis_3lib_6nsgrid_9NSResults_add_neighbors(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, int, int, double)’: 2023-05-27T21:29:01,317 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-27T21:29:01,317 1198 | _M_realloc_insert(end(), __x); 2023-05-27T21:29:01,317 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-05-27T21:29:01,355 In file included from /usr/include/c++/10/vector:72, 2023-05-27T21:29:01,355 from MDAnalysis/lib/nsgrid.cpp:793: 2023-05-27T21:29:01,355 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-05-27T21:29:01,355 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-05-27T21:29:01,355 426 | vector<_Tp, _Alloc>:: 2023-05-27T21:29:01,355 | ^~~~~~~~~~~~~~~~~~~ 2023-05-27T21:29:01,608 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* __pyx_f_10MDAnalysis_3lib_6nsgrid___pyx_unpickle_NSResults__set_state(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, PyObject*)’: 2023-05-27T21:29:01,608 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-05-27T21:29:01,608 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-05-27T21:29:01,608 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-05-27T21:29:04,824 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:29:05,158 building 'MDAnalysis.coordinates.timestep' extension 2023-05-27T21:29:05,159 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-05-27T21:29:05,159 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/coordinates/timestep.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 2023-05-27T21:29:05,187 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence 2023-05-27T21:29:05,395 In file included from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2023-05-27T21:29:05,396 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-05-27T21:29:05,396 from /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-05-27T21:29:05,396 from MDAnalysis/coordinates/timestep.cpp:795: 2023-05-27T21:29:05,396 /tmp/pip-build-env-6_kkyyxj/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-05-27T21:29:05,396 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-05-27T21:29:05,396 | ^~~~~~~ 2023-05-27T21:29:23,228 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so 2023-05-27T21:29:23,437 installing to build/bdist.linux-armv7l/wheel 2023-05-27T21:29:23,437 running install 2023-05-27T21:29:23,463 running install_lib 2023-05-27T21:29:23,471 creating build/bdist.linux-armv7l 2023-05-27T21:29:23,472 creating build/bdist.linux-armv7l/wheel 2023-05-27T21:29:23,473 creating build/bdist.linux-armv7l/wheel/MDAnalysis 2023-05-27T21:29:23,475 creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-05-27T21:29:23,476 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-05-27T21:29:23,478 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-05-27T21:29:23,480 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-05-27T21:29:23,482 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-05-27T21:29:23,484 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-05-27T21:29:23,486 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-05-27T21:29:23,488 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-05-27T21:29:23,491 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-05-27T21:29:23,493 creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization 2023-05-27T21:29:23,494 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization 2023-05-27T21:29:23,497 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization 2023-05-27T21:29:23,499 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization 2023-05-27T21:29:23,502 creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-05-27T21:29:23,503 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-05-27T21:29:23,506 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-05-27T21:29:23,508 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-05-27T21:29:23,511 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-05-27T21:29:23,513 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-05-27T21:29:23,516 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-05-27T21:29:23,518 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-05-27T21:29:23,521 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-05-27T21:29:23,523 creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests 2023-05-27T21:29:23,524 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests 2023-05-27T21:29:23,526 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests 2023-05-27T21:29:23,528 creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-05-27T21:29:23,529 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-05-27T21:29:23,532 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-05-27T21:29:23,533 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-05-27T21:29:23,536 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-05-27T21:29:23,539 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-05-27T21:29:23,542 creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,543 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,546 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,548 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,550 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,553 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,555 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,558 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,560 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,561 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,563 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,566 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,569 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,571 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,574 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,576 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,580 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,582 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,585 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,587 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,590 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,604 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,622 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,624 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,626 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,629 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,631 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,634 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,636 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,639 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,642 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,644 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,647 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,649 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,652 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,654 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,658 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,660 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-05-27T21:29:23,662 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,663 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,666 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,669 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,670 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,676 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,685 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:29:23,686 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:29:23,688 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-05-27T21:29:23,689 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-05-27T21:29:23,691 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:29:23,693 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:29:23,695 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:29:23,698 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:29:23,707 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include 2023-05-27T21:29:23,708 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include 2023-05-27T21:29:23,710 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-05-27T21:29:23,719 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,721 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,723 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,726 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,729 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-05-27T21:29:23,730 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src 2023-05-27T21:29:23,731 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src 2023-05-27T21:29:23,734 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-05-27T21:29:23,742 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-05-27T21:29:23,745 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-05-27T21:29:23,747 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-05-27T21:29:23,758 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-05-27T21:29:23,760 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-05-27T21:29:23,762 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-05-27T21:29:23,764 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include 2023-05-27T21:29:23,765 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include 2023-05-27T21:29:23,767 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,770 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,772 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-05-27T21:29:23,775 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-05-27T21:29:23,776 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-05-27T21:29:23,778 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-05-27T21:29:23,782 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-05-27T21:29:23,784 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-05-27T21:29:23,787 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy 2023-05-27T21:29:23,788 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy 2023-05-27T21:29:23,792 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy 2023-05-27T21:29:23,794 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,798 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,801 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,804 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,806 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,809 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:29:23,810 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:29:23,814 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:29:23,817 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:29:23,820 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-05-27T21:29:23,822 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,826 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,828 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,831 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,834 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-05-27T21:29:23,835 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-05-27T21:29:23,839 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-05-27T21:29:23,841 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-05-27T21:29:23,844 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-05-27T21:29:23,845 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,850 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,853 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,856 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,858 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,861 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,863 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,866 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,868 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,872 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,874 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,877 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,881 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds 2023-05-27T21:29:23,882 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds 2023-05-27T21:29:23,884 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds 2023-05-27T21:29:23,886 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-05-27T21:29:23,889 creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,890 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,893 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,896 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,899 creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-05-27T21:29:23,900 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-05-27T21:29:23,902 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-05-27T21:29:23,904 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-05-27T21:29:23,906 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-05-27T21:29:23,909 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,912 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,914 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,916 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,918 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,921 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,923 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,926 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,928 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,930 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,933 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,936 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,939 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,941 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,944 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,946 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,948 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,951 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,954 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,955 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,958 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,961 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,963 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,965 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,967 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-05-27T21:29:23,970 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:23,971 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:23,974 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis 2023-05-27T21:29:23,975 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis 2023-05-27T21:29:23,977 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:23,984 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,003 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src 2023-05-27T21:29:24,005 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations 2023-05-27T21:29:24,006 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations 2023-05-27T21:29:24,011 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations 2023-05-27T21:29:24,013 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations 2023-05-27T21:29:24,015 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,018 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,021 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,047 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,072 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,094 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,097 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,099 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,116 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,124 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,127 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,130 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,170 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,173 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,182 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,186 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,191 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,192 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,195 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,232 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,235 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,256 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-05-27T21:29:24,258 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-05-27T21:29:24,261 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-05-27T21:29:24,264 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-05-27T21:29:24,266 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-05-27T21:29:24,269 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-05-27T21:29:24,271 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,285 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,288 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,290 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,292 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,295 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,297 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,329 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,346 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-05-27T21:29:24,370 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,371 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,373 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,376 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,378 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,380 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,381 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,384 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,386 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-05-27T21:29:24,388 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,391 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,392 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,402 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,404 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,408 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,410 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,412 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,415 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,448 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,471 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include 2023-05-27T21:29:24,472 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include 2023-05-27T21:29:24,475 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,477 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-05-27T21:29:24,486 creating build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,487 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,490 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,495 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,499 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,502 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,506 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,508 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,510 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,513 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-05-27T21:29:24,515 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-05-27T21:29:24,518 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-05-27T21:29:24,520 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-05-27T21:29:24,522 creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,523 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,526 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,528 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,530 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,532 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,535 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,538 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,540 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,542 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-05-27T21:29:24,545 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-05-27T21:29:24,546 running install_egg_info 2023-05-27T21:29:24,552 Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/MDAnalysis-2.5.0-py3.9.egg-info 2023-05-27T21:29:24,566 running install_scripts 2023-05-27T21:29:24,630 creating build/bdist.linux-armv7l/wheel/MDAnalysis-2.5.0.dist-info/WHEEL 2023-05-27T21:29:24,634 creating '/tmp/pip-wheel-g41nnsmv/.tmp-tarqn9rv/MDAnalysis-2.5.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-27T21:29:24,637 adding 'MDAnalysis/__init__.py' 2023-05-27T21:29:24,639 adding 'MDAnalysis/authors.py' 2023-05-27T21:29:24,640 adding 'MDAnalysis/due.py' 2023-05-27T21:29:24,641 adding 'MDAnalysis/exceptions.py' 2023-05-27T21:29:24,644 adding 'MDAnalysis/units.py' 2023-05-27T21:29:24,645 adding 'MDAnalysis/version.py' 2023-05-27T21:29:24,647 adding 'MDAnalysis/analysis/__init__.py' 2023-05-27T21:29:24,655 adding 'MDAnalysis/analysis/align.py' 2023-05-27T21:29:24,657 adding 'MDAnalysis/analysis/atomicdistances.py' 2023-05-27T21:29:24,660 adding 'MDAnalysis/analysis/base.py' 2023-05-27T21:29:24,664 adding 'MDAnalysis/analysis/bat.py' 2023-05-27T21:29:24,666 adding 'MDAnalysis/analysis/contacts.py' 2023-05-27T21:29:24,671 adding 'MDAnalysis/analysis/density.py' 2023-05-27T21:29:24,673 adding 'MDAnalysis/analysis/dielectric.py' 2023-05-27T21:29:24,676 adding 'MDAnalysis/analysis/diffusionmap.py' 2023-05-27T21:29:24,679 adding 'MDAnalysis/analysis/dihedrals.py' 2023-05-27T21:29:24,681 adding 'MDAnalysis/analysis/distances.py' 2023-05-27T21:29:24,683 adding 'MDAnalysis/analysis/gnm.py' 2023-05-27T21:29:24,686 adding 'MDAnalysis/analysis/helix_analysis.py' 2023-05-27T21:29:24,688 adding 'MDAnalysis/analysis/leaflet.py' 2023-05-27T21:29:24,690 adding 'MDAnalysis/analysis/lineardensity.py' 2023-05-27T21:29:24,693 adding 'MDAnalysis/analysis/msd.py' 2023-05-27T21:29:24,695 adding 'MDAnalysis/analysis/nucleicacids.py' 2023-05-27T21:29:24,697 adding 'MDAnalysis/analysis/nuclinfo.py' 2023-05-27T21:29:24,702 adding 'MDAnalysis/analysis/pca.py' 2023-05-27T21:29:24,704 adding 'MDAnalysis/analysis/polymer.py' 2023-05-27T21:29:24,714 adding 'MDAnalysis/analysis/psa.py' 2023-05-27T21:29:24,717 adding 'MDAnalysis/analysis/rdf.py' 2023-05-27T21:29:24,722 adding 'MDAnalysis/analysis/rms.py' 2023-05-27T21:29:24,727 adding 'MDAnalysis/analysis/waterdynamics.py' 2023-05-27T21:29:24,729 adding 'MDAnalysis/analysis/data/__init__.py' 2023-05-27T21:29:24,730 adding 'MDAnalysis/analysis/data/filenames.py' 2023-05-27T21:29:24,734 adding 'MDAnalysis/analysis/data/janin_ref_data.npy' 2023-05-27T21:29:24,739 adding 'MDAnalysis/analysis/data/rama_ref_data.npy' 2023-05-27T21:29:24,741 adding 'MDAnalysis/analysis/encore/__init__.py' 2023-05-27T21:29:24,743 adding 'MDAnalysis/analysis/encore/bootstrap.py' 2023-05-27T21:29:24,745 adding 'MDAnalysis/analysis/encore/confdistmatrix.py' 2023-05-27T21:29:24,747 adding 'MDAnalysis/analysis/encore/covariance.py' 2023-05-27T21:29:24,769 adding 'MDAnalysis/analysis/encore/cutils.c' 2023-05-27T21:29:24,806 adding 'MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:24,808 adding 'MDAnalysis/analysis/encore/cutils.pyx' 2023-05-27T21:29:24,814 adding 'MDAnalysis/analysis/encore/similarity.py' 2023-05-27T21:29:24,817 adding 'MDAnalysis/analysis/encore/utils.py' 2023-05-27T21:29:24,819 adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py' 2023-05-27T21:29:24,821 adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py' 2023-05-27T21:29:24,823 adding 'MDAnalysis/analysis/encore/clustering/__init__.py' 2023-05-27T21:29:24,853 adding 'MDAnalysis/analysis/encore/clustering/affinityprop.c' 2023-05-27T21:29:24,959 adding 'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:24,964 adding 'MDAnalysis/analysis/encore/clustering/affinityprop.pyx' 2023-05-27T21:29:24,966 adding 'MDAnalysis/analysis/encore/clustering/cluster.py' 2023-05-27T21:29:24,968 adding 'MDAnalysis/analysis/encore/clustering/include/ap.h' 2023-05-27T21:29:24,971 adding 'MDAnalysis/analysis/encore/clustering/src/ap.c' 2023-05-27T21:29:24,973 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py' 2023-05-27T21:29:24,974 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py' 2023-05-27T21:29:24,976 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py' 2023-05-27T21:29:24,999 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c' 2023-05-27T21:29:25,066 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:25,070 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx' 2023-05-27T21:29:25,071 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h' 2023-05-27T21:29:25,074 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c' 2023-05-27T21:29:25,075 adding 'MDAnalysis/analysis/hbonds/__init__.py' 2023-05-27T21:29:25,077 adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py' 2023-05-27T21:29:25,079 adding 'MDAnalysis/analysis/hole2/__init__.py' 2023-05-27T21:29:25,085 adding 'MDAnalysis/analysis/hole2/hole.py' 2023-05-27T21:29:25,087 adding 'MDAnalysis/analysis/hole2/templates.py' 2023-05-27T21:29:25,090 adding 'MDAnalysis/analysis/hole2/utils.py' 2023-05-27T21:29:25,092 adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py' 2023-05-27T21:29:25,096 adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py' 2023-05-27T21:29:25,100 adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py' 2023-05-27T21:29:25,110 adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py' 2023-05-27T21:29:25,112 adding 'MDAnalysis/analysis/legacy/__init__.py' 2023-05-27T21:29:25,116 adding 'MDAnalysis/analysis/legacy/x3dna.py' 2023-05-27T21:29:25,119 adding 'MDAnalysis/auxiliary/EDR.py' 2023-05-27T21:29:25,122 adding 'MDAnalysis/auxiliary/XVG.py' 2023-05-27T21:29:25,125 adding 'MDAnalysis/auxiliary/__init__.py' 2023-05-27T21:29:25,130 adding 'MDAnalysis/auxiliary/base.py' 2023-05-27T21:29:25,132 adding 'MDAnalysis/auxiliary/core.py' 2023-05-27T21:29:25,134 adding 'MDAnalysis/converters/OpenMM.py' 2023-05-27T21:29:25,136 adding 'MDAnalysis/converters/OpenMMParser.py' 2023-05-27T21:29:25,138 adding 'MDAnalysis/converters/ParmEd.py' 2023-05-27T21:29:25,140 adding 'MDAnalysis/converters/ParmEdParser.py' 2023-05-27T21:29:25,145 adding 'MDAnalysis/converters/RDKit.py' 2023-05-27T21:29:25,147 adding 'MDAnalysis/converters/RDKitParser.py' 2023-05-27T21:29:25,148 adding 'MDAnalysis/converters/__init__.py' 2023-05-27T21:29:25,151 adding 'MDAnalysis/coordinates/CRD.py' 2023-05-27T21:29:25,154 adding 'MDAnalysis/coordinates/DCD.py' 2023-05-27T21:29:25,156 adding 'MDAnalysis/coordinates/DLPoly.py' 2023-05-27T21:29:25,158 adding 'MDAnalysis/coordinates/DMS.py' 2023-05-27T21:29:25,160 adding 'MDAnalysis/coordinates/FHIAIMS.py' 2023-05-27T21:29:25,162 adding 'MDAnalysis/coordinates/GMS.py' 2023-05-27T21:29:25,164 adding 'MDAnalysis/coordinates/GRO.py' 2023-05-27T21:29:25,166 adding 'MDAnalysis/coordinates/GSD.py' 2023-05-27T21:29:25,174 adding 'MDAnalysis/coordinates/H5MD.py' 2023-05-27T21:29:25,176 adding 'MDAnalysis/coordinates/INPCRD.py' 2023-05-27T21:29:25,179 adding 'MDAnalysis/coordinates/LAMMPS.py' 2023-05-27T21:29:25,181 adding 'MDAnalysis/coordinates/MMTF.py' 2023-05-27T21:29:25,183 adding 'MDAnalysis/coordinates/MOL2.py' 2023-05-27T21:29:25,185 adding 'MDAnalysis/coordinates/NAMDBIN.py' 2023-05-27T21:29:25,192 adding 'MDAnalysis/coordinates/PDB.py' 2023-05-27T21:29:25,195 adding 'MDAnalysis/coordinates/PDBQT.py' 2023-05-27T21:29:25,197 adding 'MDAnalysis/coordinates/PQR.py' 2023-05-27T21:29:25,199 adding 'MDAnalysis/coordinates/ParmEd.py' 2023-05-27T21:29:25,201 adding 'MDAnalysis/coordinates/TNG.py' 2023-05-27T21:29:25,207 adding 'MDAnalysis/coordinates/TRJ.py' 2023-05-27T21:29:25,209 adding 'MDAnalysis/coordinates/TRR.py' 2023-05-27T21:29:25,212 adding 'MDAnalysis/coordinates/TRZ.py' 2023-05-27T21:29:25,214 adding 'MDAnalysis/coordinates/TXYZ.py' 2023-05-27T21:29:25,216 adding 'MDAnalysis/coordinates/XDR.py' 2023-05-27T21:29:25,218 adding 'MDAnalysis/coordinates/XTC.py' 2023-05-27T21:29:25,220 adding 'MDAnalysis/coordinates/XYZ.py' 2023-05-27T21:29:25,225 adding 'MDAnalysis/coordinates/__init__.py' 2023-05-27T21:29:25,233 adding 'MDAnalysis/coordinates/base.py' 2023-05-27T21:29:25,237 adding 'MDAnalysis/coordinates/chain.py' 2023-05-27T21:29:25,240 adding 'MDAnalysis/coordinates/chemfiles.py' 2023-05-27T21:29:25,242 adding 'MDAnalysis/coordinates/core.py' 2023-05-27T21:29:25,245 adding 'MDAnalysis/coordinates/memory.py' 2023-05-27T21:29:25,246 adding 'MDAnalysis/coordinates/null.py' 2023-05-27T21:29:25,306 adding 'MDAnalysis/coordinates/timestep.cpp' 2023-05-27T21:29:25,537 adding 'MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:25,545 adding 'MDAnalysis/coordinates/timestep.pxd' 2023-05-27T21:29:25,549 adding 'MDAnalysis/coordinates/timestep.pyx' 2023-05-27T21:29:25,551 adding 'MDAnalysis/core/__init__.py' 2023-05-27T21:29:25,553 adding 'MDAnalysis/core/_get_readers.py' 2023-05-27T21:29:25,555 adding 'MDAnalysis/core/accessors.py' 2023-05-27T21:29:25,576 adding 'MDAnalysis/core/groups.py' 2023-05-27T21:29:25,584 adding 'MDAnalysis/core/selection.py' 2023-05-27T21:29:25,587 adding 'MDAnalysis/core/topology.py' 2023-05-27T21:29:25,598 adding 'MDAnalysis/core/topologyattrs.py' 2023-05-27T21:29:25,603 adding 'MDAnalysis/core/topologyobjects.py' 2023-05-27T21:29:25,610 adding 'MDAnalysis/core/universe.py' 2023-05-27T21:29:25,613 adding 'MDAnalysis/lib/NeighborSearch.py' 2023-05-27T21:29:25,615 adding 'MDAnalysis/lib/__init__.py' 2023-05-27T21:29:25,689 adding 'MDAnalysis/lib/_augment.cpp' 2023-05-27T21:29:25,959 adding 'MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:25,970 adding 'MDAnalysis/lib/_augment.pyx' 2023-05-27T21:29:26,051 adding 'MDAnalysis/lib/_cutil.cpp' 2023-05-27T21:29:26,397 adding 'MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:26,410 adding 'MDAnalysis/lib/_cutil.pxd' 2023-05-27T21:29:26,412 adding 'MDAnalysis/lib/_cutil.pyx' 2023-05-27T21:29:26,414 adding 'MDAnalysis/lib/_distopia.py' 2023-05-27T21:29:26,467 adding 'MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:26,560 adding 'MDAnalysis/lib/c_distances.c' 2023-05-27T21:29:26,886 adding 'MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:26,899 adding 'MDAnalysis/lib/c_distances.pyx' 2023-05-27T21:29:26,922 adding 'MDAnalysis/lib/c_distances_openmp.c' 2023-05-27T21:29:26,984 adding 'MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:26,988 adding 'MDAnalysis/lib/c_distances_openmp.pyx' 2023-05-27T21:29:26,990 adding 'MDAnalysis/lib/correlations.py' 2023-05-27T21:29:26,997 adding 'MDAnalysis/lib/distances.py' 2023-05-27T21:29:26,999 adding 'MDAnalysis/lib/log.py' 2023-05-27T21:29:27,002 adding 'MDAnalysis/lib/mdamath.py' 2023-05-27T21:29:27,085 adding 'MDAnalysis/lib/nsgrid.cpp' 2023-05-27T21:29:27,416 adding 'MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:27,429 adding 'MDAnalysis/lib/nsgrid.pyx' 2023-05-27T21:29:27,432 adding 'MDAnalysis/lib/picklable_file_io.py' 2023-05-27T21:29:27,434 adding 'MDAnalysis/lib/pkdtree.py' 2023-05-27T21:29:27,465 adding 'MDAnalysis/lib/qcprot.c' 2023-05-27T21:29:27,541 adding 'MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:27,546 adding 'MDAnalysis/lib/qcprot.pyx' 2023-05-27T21:29:27,553 adding 'MDAnalysis/lib/transformations.py' 2023-05-27T21:29:27,565 adding 'MDAnalysis/lib/util.py' 2023-05-27T21:29:27,568 adding 'MDAnalysis/lib/formats/__init__.py' 2023-05-27T21:29:27,633 adding 'MDAnalysis/lib/formats/cython_util.c' 2023-05-27T21:29:27,842 adding 'MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:27,850 adding 'MDAnalysis/lib/formats/cython_util.pxd' 2023-05-27T21:29:27,851 adding 'MDAnalysis/lib/formats/cython_util.pyx' 2023-05-27T21:29:27,949 adding 'MDAnalysis/lib/formats/libdcd.c' 2023-05-27T21:29:28,331 adding 'MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:28,344 adding 'MDAnalysis/lib/formats/libdcd.pxd' 2023-05-27T21:29:28,347 adding 'MDAnalysis/lib/formats/libdcd.pyx' 2023-05-27T21:29:28,443 adding 'MDAnalysis/lib/formats/libmdaxdr.c' 2023-05-27T21:29:28,857 adding 'MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so' 2023-05-27T21:29:28,871 adding 'MDAnalysis/lib/formats/libmdaxdr.pxd' 2023-05-27T21:29:28,874 adding 'MDAnalysis/lib/formats/libmdaxdr.pyx' 2023-05-27T21:29:28,877 adding 'MDAnalysis/lib/formats/include/endianswap.h' 2023-05-27T21:29:28,878 adding 'MDAnalysis/lib/formats/include/fastio.h' 2023-05-27T21:29:28,882 adding 'MDAnalysis/lib/formats/include/readdcd.h' 2023-05-27T21:29:28,883 adding 'MDAnalysis/lib/formats/include/trr_seek.h' 2023-05-27T21:29:28,886 adding 'MDAnalysis/lib/formats/include/xdrfile.h' 2023-05-27T21:29:28,888 adding 'MDAnalysis/lib/formats/include/xdrfile_trr.h' 2023-05-27T21:29:28,889 adding 'MDAnalysis/lib/formats/include/xdrfile_xtc.h' 2023-05-27T21:29:28,890 adding 'MDAnalysis/lib/formats/include/xtc_seek.h' 2023-05-27T21:29:28,892 adding 'MDAnalysis/lib/formats/src/trr_seek.c' 2023-05-27T21:29:28,899 adding 'MDAnalysis/lib/formats/src/xdrfile.c' 2023-05-27T21:29:28,901 adding 'MDAnalysis/lib/formats/src/xdrfile_trr.c' 2023-05-27T21:29:28,903 adding 'MDAnalysis/lib/formats/src/xdrfile_xtc.c' 2023-05-27T21:29:28,904 adding 'MDAnalysis/lib/formats/src/xtc_seek.c' 2023-05-27T21:29:28,907 adding 'MDAnalysis/lib/include/calc_distances.h' 2023-05-27T21:29:28,909 adding 'MDAnalysis/lib/libmdanalysis/__init__.pxd' 2023-05-27T21:29:28,911 adding 'MDAnalysis/lib/src/transformations/AUTHOR' 2023-05-27T21:29:28,912 adding 'MDAnalysis/lib/src/transformations/LICENCE' 2023-05-27T21:29:28,922 adding 'MDAnalysis/lib/src/transformations/transformations.c' 2023-05-27T21:29:28,925 adding 'MDAnalysis/selections/__init__.py' 2023-05-27T21:29:28,927 adding 'MDAnalysis/selections/base.py' 2023-05-27T21:29:28,929 adding 'MDAnalysis/selections/charmm.py' 2023-05-27T21:29:28,930 adding 'MDAnalysis/selections/gromacs.py' 2023-05-27T21:29:28,931 adding 'MDAnalysis/selections/jmol.py' 2023-05-27T21:29:28,933 adding 'MDAnalysis/selections/pymol.py' 2023-05-27T21:29:28,934 adding 'MDAnalysis/selections/vmd.py' 2023-05-27T21:29:28,936 adding 'MDAnalysis/tests/__init__.py' 2023-05-27T21:29:28,937 adding 'MDAnalysis/tests/datafiles.py' 2023-05-27T21:29:28,940 adding 'MDAnalysis/topology/CRDParser.py' 2023-05-27T21:29:28,941 adding 'MDAnalysis/topology/DLPolyParser.py' 2023-05-27T21:29:28,943 adding 'MDAnalysis/topology/DMSParser.py' 2023-05-27T21:29:28,944 adding 'MDAnalysis/topology/ExtendedPDBParser.py' 2023-05-27T21:29:28,946 adding 'MDAnalysis/topology/FHIAIMSParser.py' 2023-05-27T21:29:28,947 adding 'MDAnalysis/topology/GMSParser.py' 2023-05-27T21:29:28,949 adding 'MDAnalysis/topology/GROParser.py' 2023-05-27T21:29:28,950 adding 'MDAnalysis/topology/GSDParser.py' 2023-05-27T21:29:28,952 adding 'MDAnalysis/topology/HoomdXMLParser.py' 2023-05-27T21:29:28,955 adding 'MDAnalysis/topology/ITPParser.py' 2023-05-27T21:29:28,958 adding 'MDAnalysis/topology/LAMMPSParser.py' 2023-05-27T21:29:28,960 adding 'MDAnalysis/topology/MMTFParser.py' 2023-05-27T21:29:28,962 adding 'MDAnalysis/topology/MOL2Parser.py' 2023-05-27T21:29:28,963 adding 'MDAnalysis/topology/MinimalParser.py' 2023-05-27T21:29:28,966 adding 'MDAnalysis/topology/PDBParser.py' 2023-05-27T21:29:28,967 adding 'MDAnalysis/topology/PDBQTParser.py' 2023-05-27T21:29:28,969 adding 'MDAnalysis/topology/PQRParser.py' 2023-05-27T21:29:28,971 adding 'MDAnalysis/topology/PSFParser.py' 2023-05-27T21:29:28,972 adding 'MDAnalysis/topology/ParmEdParser.py' 2023-05-27T21:29:28,975 adding 'MDAnalysis/topology/TOPParser.py' 2023-05-27T21:29:28,978 adding 'MDAnalysis/topology/TPRParser.py' 2023-05-27T21:29:28,979 adding 'MDAnalysis/topology/TXYZParser.py' 2023-05-27T21:29:28,981 adding 'MDAnalysis/topology/XYZParser.py' 2023-05-27T21:29:28,983 adding 'MDAnalysis/topology/__init__.py' 2023-05-27T21:29:28,985 adding 'MDAnalysis/topology/base.py' 2023-05-27T21:29:28,986 adding 'MDAnalysis/topology/core.py' 2023-05-27T21:29:28,989 adding 'MDAnalysis/topology/guessers.py' 2023-05-27T21:29:28,991 adding 'MDAnalysis/topology/tables.py' 2023-05-27T21:29:28,993 adding 'MDAnalysis/topology/tpr/__init__.py' 2023-05-27T21:29:28,994 adding 'MDAnalysis/topology/tpr/obj.py' 2023-05-27T21:29:28,996 adding 'MDAnalysis/topology/tpr/setting.py' 2023-05-27T21:29:29,000 adding 'MDAnalysis/topology/tpr/utils.py' 2023-05-27T21:29:29,002 adding 'MDAnalysis/transformations/__init__.py' 2023-05-27T21:29:29,004 adding 'MDAnalysis/transformations/base.py' 2023-05-27T21:29:29,005 adding 'MDAnalysis/transformations/boxdimensions.py' 2023-05-27T21:29:29,007 adding 'MDAnalysis/transformations/fit.py' 2023-05-27T21:29:29,009 adding 'MDAnalysis/transformations/nojump.py' 2023-05-27T21:29:29,011 adding 'MDAnalysis/transformations/positionaveraging.py' 2023-05-27T21:29:29,012 adding 'MDAnalysis/transformations/rotate.py' 2023-05-27T21:29:29,014 adding 'MDAnalysis/transformations/translate.py' 2023-05-27T21:29:29,015 adding 'MDAnalysis/transformations/wrap.py' 2023-05-27T21:29:29,017 adding 'MDAnalysis/visualization/__init__.py' 2023-05-27T21:29:29,020 adding 'MDAnalysis/visualization/streamlines.py' 2023-05-27T21:29:29,023 adding 'MDAnalysis/visualization/streamlines_3D.py' 2023-05-27T21:29:29,026 adding 'MDAnalysis-2.5.0.dist-info/AUTHORS' 2023-05-27T21:29:29,030 adding 'MDAnalysis-2.5.0.dist-info/LICENSE' 2023-05-27T21:29:29,035 adding 'MDAnalysis-2.5.0.dist-info/METADATA' 2023-05-27T21:29:29,036 adding 'MDAnalysis-2.5.0.dist-info/WHEEL' 2023-05-27T21:29:29,037 adding 'MDAnalysis-2.5.0.dist-info/top_level.txt' 2023-05-27T21:29:29,041 adding 'MDAnalysis-2.5.0.dist-info/RECORD' 2023-05-27T21:29:29,127 removing build/bdist.linux-armv7l/wheel 2023-05-27T21:29:29,393 Building wheel for mdanalysis (pyproject.toml): finished with status 'done' 2023-05-27T21:29:29,560 Created wheel for mdanalysis: filename=MDAnalysis-2.5.0-cp39-cp39-linux_armv7l.whl size=7800015 sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 2023-05-27T21:29:29,561 Stored in directory: /tmp/pip-ephem-wheel-cache-ccjpw8tc/wheels/ae/69/1b/9302a2c1daebc433194cf7921598c08c7c11a35906f0ea9131 2023-05-27T21:29:29,589 Successfully built mdanalysis 2023-05-27T21:29:29,770 Removed build tracker: '/tmp/pip-build-tracker-hcywbx_9'