2023-06-07T22:46:48,356 Created temporary directory: /tmp/pip-build-tracker-2s0ohbvs 2023-06-07T22:46:48,359 Initialized build tracking at /tmp/pip-build-tracker-2s0ohbvs 2023-06-07T22:46:48,359 Created build tracker: /tmp/pip-build-tracker-2s0ohbvs 2023-06-07T22:46:48,360 Entered build tracker: /tmp/pip-build-tracker-2s0ohbvs 2023-06-07T22:46:48,361 Created temporary directory: /tmp/pip-wheel-tgcb6ip5 2023-06-07T22:46:48,370 Created temporary directory: /tmp/pip-ephem-wheel-cache-h7kwrblw 2023-06-07T22:46:48,434 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-07T22:46:48,442 2 location(s) to search for versions of pyhmmer: 2023-06-07T22:46:48,442 * https://pypi.org/simple/pyhmmer/ 2023-06-07T22:46:48,442 * https://www.piwheels.org/simple/pyhmmer/ 2023-06-07T22:46:48,444 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2023-06-07T22:46:48,445 Getting page https://pypi.org/simple/pyhmmer/ 2023-06-07T22:46:48,449 Found index url https://pypi.org/simple/ 2023-06-07T22:46:48,677 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2023-06-07T22:46:48,998 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/24/b9adc93653b83e3aa333588f8fe80cf6a058b97497a1a722e7a2cf5bc5b3/pyhmmer-0.1.0a1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:48,999 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/5a/594c4415860394f14b94137e10f3b6264fbd452a9ed00371fef870bdd68e/pyhmmer-0.1.0a1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:48,999 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/fe/4cf2fc8c5eb288fc72cbbc151d6da1b6f6e73fcba66842ed40532069902d/pyhmmer-0.1.0a1-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,000 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/c9/3f46d702c63e188539c28555af361e58ead4bff416799042c5ecf97805cb/pyhmmer-0.1.0a1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,000 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/12/f5d1ef8114cc5e0ab890d562768e9a6eb253b3e3bf258f8105c1d1841c73/pyhmmer-0.1.0a1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,001 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/b6/b92f44fcc712bc3dd621eccefe34d569a17f0ae73133f352a47fb2029c44/pyhmmer-0.1.0a1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,002 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/b6/0ca49ee6803d761eefc93528e9e8106151e06acf77ba9f669275c01863ac/pyhmmer-0.1.0a1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,002 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/0d/e2e21b3925af6887baf35a3e8993b5fe4863d93638138e7d5f236bcf2197/pyhmmer-0.1.0a1-cp38-cp38-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,003 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/3d/aac55b3f74ecd81ff3f619083c277ba40df45d8e6b8fc19d58eb74fab09b/pyhmmer-0.1.0a1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,003 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/cc/11cb714fad98ed3c1689ce83a31a29d744ed34c822af3ae63b2450e6b159/pyhmmer-0.1.0a1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,004 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/39/ca6e515c639a28632e52579a75aabe22d6bf2fe2a66cb2bd407fea81a1fe/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,004 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-06-07T22:46:49,005 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2023-06-07T22:46:49,006 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,006 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/a8/b31471655d0f09813748c9d8888587e3a1e1573f0c01c748676d03cc3c51/pyhmmer-0.1.0a2-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,007 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/1f/4b3aef73b2a9d4e07d56700a1a11794e6c92dd9018c1008b53e6c0e903ca/pyhmmer-0.1.0a2-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,008 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/83/a386d9e2350ec96fe9d0c6d8c274c72afda82745e5586926966b0c8e678f/pyhmmer-0.1.0a2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,008 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,009 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,009 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,010 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,010 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,011 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,011 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,012 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,013 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,014 Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2 2023-06-07T22:46:49,015 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,016 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,016 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ac/a6/5d0240be2817e6b3c876493903fdf300a05a4d27ab4ce3e71a86bb4e6e47/pyhmmer-0.1.0a3-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,017 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,017 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,018 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,018 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,019 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,019 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5f/78/7cd9016de0f1aa1ee2da0200224cb886959e62cb97c933553cdc7fd2560f/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,022 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,023 Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3 2023-06-07T22:46:49,024 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl 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binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/90/3f2cc3b8d0d2400b4cb21655f124b1704f0b71b05a0680f6671b19ec566c/pyhmmer-0.1.0a4-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,026 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/bc625da5fac25a825470749a1a0465f15cceb4c702cb9efd8b69e76de5e7/pyhmmer-0.1.0a4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,027 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4c/35/22c6cb71edfcb82ef9d649d3adb11574f1f1ec930491242295c3916e7572/pyhmmer-0.1.0a4-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-06-07T22:46:49,028 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9b/00/3a84465ed08c531aa7fafc575f16840c94a75bba9ab4cd2b46e906f0431e/pyhmmer-0.3.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.3.1 2023-06-07T22:46:49,119 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/19/9d179de61801cf015e36b58915320bc456482b86001c9e5de25cf56f7e69/pyhmmer-0.4.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,120 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/05/7fb226eb9c2131dd60bd56f0077e006a4e51da51272d92163b62ca4f8eea/pyhmmer-0.4.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,120 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9c/5e/212fe49995ccad358150012abf2da8ffbc25f024436b6fdcc89173e95b32/pyhmmer-0.4.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,141 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/9e/486d5da6d404842d00eabfbb1d7a25ffc0c49503dd7d267f1a6a701840e5/pyhmmer-0.4.2-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,141 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/88/b8bb0c20875f4638bb7d600c4c3dc65eb742b3a9833c730aa4915e94aa9a/pyhmmer-0.4.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,143 Found link https://files.pythonhosted.org/packages/2f/93/fa15885ede25f87ac2fa5e2cef12831bb8747b7e8455982ca2942ba61c7b/pyhmmer-0.4.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.2 2023-06-07T22:46:49,144 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/da/5e42fc076686aab8588bafb9d3e5c97a6c8bb4b24060eb943836c303cf11/pyhmmer-0.4.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,144 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/50/caff34277134400d58687859f224f34e88a6aa7abc6b3371150c3997f7a1/pyhmmer-0.4.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,145 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/43/726fc37dd0ece9c81780c9e29b90be4493693f4c6e8edde68b3cf8189125/pyhmmer-0.4.3-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,145 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bf/5f/6a88535a37b4de01584d62e008fb415adbe3f1440950dabba648943aa3c1/pyhmmer-0.4.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,146 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/6c/ec2ff99e8dc22520805ecf43ff22369a1ca0228cbd6fabfc3de0d7695481/pyhmmer-0.4.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,146 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/9a/8df126ab5ccf2278e9b3414c26f53bf01b480164abcc11c9d2d56d9f67f4/pyhmmer-0.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,147 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2d/63/9e0ac76ca6baae6f288983a7af56de078773b5c0d61004419d1319197f61/pyhmmer-0.4.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,147 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/30/05d945cce1855035b4bb78996bac7ce0e371e2dc82b186147e36d551e1d0/pyhmmer-0.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,148 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/94/cacfb35c7ee944e9b9dac2ba8ef20cc192958cdbf1e4e223783152251a7b/pyhmmer-0.4.3-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,148 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/ba/e2347228e6bc83d22820f46bf33ed8558ce1128a60128edd2b9bd770078e/pyhmmer-0.4.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,149 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/9a/d5447b14a91a994bd2ec38a1a4880c29c93bce74e1aa7a328a794901a870/pyhmmer-0.4.3-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,150 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/eb/87/8074c4e8896b87ef161b2490f525315f70c4783e567cfc15679bdab1f059/pyhmmer-0.4.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,151 Found link https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2023-06-07T22:46:49,152 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,152 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e5/94/33f25a0d8f7761ac55acd5839c50078efe810b1e1ae0006113ca92c58d90/pyhmmer-0.4.5-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,164 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a3/c5f8dd1e931959d9c38df19fc937c6cf8568174e30ea2c2a86849cbd4b01/pyhmmer-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,164 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/36/0407821105d77948e7d703ee4aeacd2cead5cf317179db06508f7cdf7ce3/pyhmmer-0.4.5-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,165 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/c3/4c/926f71ac0913fbe2426f5f3ac8071edb4e700591b690c4acbaa7b559fb38/pyhmmer-0.4.5.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.5 2023-06-07T22:46:49,168 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/af/85534ee68bcdcb07d92d7630536659edaf435f0e7f8784189c53af637228/pyhmmer-0.4.6-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,168 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/03/d3/691d493cfc4d37f8f099ec52179d86fffaed4c9e3a6b9d76f6a3b5cf0e27/pyhmmer-0.4.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,169 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/f0/343198b3cebda51800efd71bc6001f5754a69c364da0f5571a5c4e91965d/pyhmmer-0.4.6-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,170 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,170 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,171 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,171 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/57/9941d06a569a34685928406e5b5d47819417a2379a26233437ca53a3484e/pyhmmer-0.4.6-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,172 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/87/171796b7139a8a44ba960344487f474d65bb5f16c21a088bede3d3cdec33/pyhmmer-0.4.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,172 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/b0/5d0f1b002f50fc531485e8691224de277d329d293bde922a35f4659e73b8/pyhmmer-0.4.6-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,173 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,173 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,174 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,175 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2023-06-07T22:46:49,176 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,177 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,177 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fc/d9b9efcc7b21381a3fa0c4b83e083c9d0b406868846054b989d105c301c8/pyhmmer-0.4.7-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,178 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d8/6f/d70ebea12581688dbcf180b983186e3d3a8ad2325cc8691c837276bb3e67/pyhmmer-0.4.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,178 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5a/91/1166980fd7eb5106ef2f34ede5ae0043daf2f276f05b0e9f93cc2d968827/pyhmmer-0.4.8.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.8 2023-06-07T22:46:49,192 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,193 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,193 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,194 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/07/442980e0fc7b4d336157fd80d843b3ad0b71709087b0daf910f2beee93cd/pyhmmer-0.4.9-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,194 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/41/f5b4ffcedcf3116573ff5740de4877723f0d69b7527ece4a794069de2235/pyhmmer-0.4.9-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,195 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/78/a6/d21ba62d70e38f7b3829c69be9179cea416599a8ee952c8f4ac5503bfd04/pyhmmer-0.4.9-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,196 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/53/6428ce4322f6af35747f3f7c3829ebaeb05bab2eae6d5ff39c46cb1455e2/pyhmmer-0.4.9-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,196 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/b0/8daba4b0c9507fac1725a9005e88e8560b66e15d1d29a422980ae2caf987/pyhmmer-0.4.9-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,197 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/de/1d/76c728871c542de627e56683ecd2768bad8019744f575bdfe037fbf7889a/pyhmmer-0.4.9-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,197 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,198 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,198 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,200 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2023-06-07T22:46:49,200 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,201 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,205 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,205 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,206 Skipping link: No binaries permitted for 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https://files.pythonhosted.org/packages/b5/2d/cd5b9729a37b0cdbe932461c79f74c75d17ac665f080f95633a8c275852d/pyhmmer-0.6.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,233 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/e9/3a1f5a5aa46b482a3bca632fff9cb173c91ba5f02a96a3f5c0d730660519/pyhmmer-0.6.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,233 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7b/72/119583107572a60f86e0f8578a7bf5d03928eeb3107d3e469336c5c41245/pyhmmer-0.6.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,234 Skipping link: No binaries 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https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,262 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,262 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,263 Skipping link: No binaries 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https://files.pythonhosted.org/packages/49/77/4a2cfc97cb2432d41d16bb851e01360e3f6fea5579c153083220927e779c/pyhmmer-0.7.0rc2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,278 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/19/9f/c9bd67b4506ea74c87aa2170245f52a7ef31d9ab0091c1f341c6cf76fa9b/pyhmmer-0.7.0rc2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,279 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/03/ee7fbc006cfd40bacc68f90e34ae6c0648eeb66e63f1702c57a595f23beb/pyhmmer-0.7.0rc2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,279 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/f6/b77002e48c526bdb1ec0bee0697ee021f31702ff7618adc1f7c8458638d8/pyhmmer-0.7.0rc2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,280 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/56/143d6ec67af6539abafac7d5ed7eda2f7dc4a22dc7ebeeb491a808a923a7/pyhmmer-0.7.0rc2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,280 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/35/66d385727a9178511182bfe841a12d45f7f64425fdfdd9ed0d93e6a74bb8/pyhmmer-0.7.0rc2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,281 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5a/ff/ece5bd11cf4cc3ec6f664f0e3a111ad6dcf207d3f6ec2ad96165259a412b/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,283 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/d2/b4d94b6921db1e4c69e9f41bb559d66fe18a2a098cde1e6434706e1eabc6/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,284 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/55/c39dc94317204fd84d5d8bbb6aed951be0706970eb5e3998aa0a4a35f46b/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,285 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f2/b9/46f7e47792b6dcd5d3330313efceea13105448ae6f6cb13af72cb60427d1/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,285 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,287 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2023-06-07T22:46:49,288 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,288 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/8b/45d7eb18b457d0a36bacee35ad14a52af74c6ad5eab2901492996e9aa4b7/pyhmmer-0.7.0rc3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,289 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/75/25d2b67c70032fd8201bcead370e87316ed0531854aaf2b9f3061623fe33/pyhmmer-0.7.0rc3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,289 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/f3/a6f3b814701a7fc0652810dcdeaaf6a60aaf90d30de21ca7c2fb873b5762/pyhmmer-0.7.0rc3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,290 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,290 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,291 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/48/67/2c8cd7621f44f1cd92ec244a9463c00c90f02a1fd5efe1be5617828055cf/pyhmmer-0.7.0rc3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,293 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/73/a2db2e27de1d9b6006d6db695b5238e850b9431ea7c57eea6988a6664b31/pyhmmer-0.7.0rc3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,293 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/35/599a1e9f081d8e5daa34f62c9225012ba906ae872d426f4b74a3a9d5b4fe/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,294 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a9/0f/e0fdfe3a3872753e8205280a83f8bfb09cdd56050bfb84137627c905bdc0/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,307 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,308 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2023-06-07T22:46:49,309 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/be/c8/273b776dc57d54b80741592ca6aee62fb31982f4ead0bbc1510a3d89f95e/pyhmmer-0.7.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,318 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/15/3005213eddd959f34442df93ebc4e44c28bb223ad9a7fa407ecc8b788e92/pyhmmer-0.7.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,318 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/e5/abea9b8c2217a67965d536d91263e89b9e1f896b54608a9e1354e6b4f38f/pyhmmer-0.7.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,319 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9e/17/03f003657c307cd45ab90e60c6ac65a72b895610952fcc41bcbb16c20013/pyhmmer-0.7.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,319 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,321 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2023-06-07T22:46:49,321 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9a/e8/add2c7bb63616995f729fb215fad8dc578ac8de57e469830f42878e52a32/pyhmmer-0.7.1rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,324 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/6a/b83eeb054f43e80c0cbe6877314d2a581b51252436da6a0b91fed65482d3/pyhmmer-0.7.1rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,324 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3a/cb/fcf2cdb81b840f0d81299dad023301851aa18832f2dfd9f35a6b502f4ccd/pyhmmer-0.7.1rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,325 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/0c/2f/8b471542f68ccfd607cbd8edd5416bb054c454349f72d1ec1aca4546ab64/pyhmmer-0.7.4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,372 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/5b/56febea19382034f45f8efd31e4cc025e88d47fcbf3b8a702e67daca65d2/pyhmmer-0.7.4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,372 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/4b/b94e77c892e9b6c656e753fe00a2e244dd63ceb1114004d3ab4c66940fc3/pyhmmer-0.7.4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,373 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/df/9b/9dd24babb7f1ef8a2fc26e39684ecc85193685b14cac93b1ab3821eada03/pyhmmer-0.7.4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,373 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/0f/687049e993619cf051ce153f9f5d195290f9df872a46ef5ed55f168cb073/pyhmmer-0.7.4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,375 Found link https://files.pythonhosted.org/packages/d4/83/1abac79f144f82424fc1e3959db6fda4d5cedc251d804b0bedbfca9b90b0/pyhmmer-0.7.4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.4 2023-06-07T22:46:49,375 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/76/9d254f4f85a2b15718dca73e2091837e359b3b19eb30d47ae15fc236c088/pyhmmer-0.8.0-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,376 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/4e/6698347f2848bf6e953daee133c6cc27fb7f340a1946815cc9566a3a3539/pyhmmer-0.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,376 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/72/99abe4102e7994572f8d786abaaa8974352e917a690e888c2becc89f93b6/pyhmmer-0.8.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,377 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c4/a6/2560bcdda70fda6cb767272851a84c700ab754bb3193ab4e7a077d10cf3d/pyhmmer-0.8.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,377 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/54/80/54e8e341dd4dbe26f6421db55e52a5381403c5a7fdb505b6348dc9661e07/pyhmmer-0.8.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,378 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/c5/7fd7e8f5418e609b6d6b12c5a24439943d85600a98ca94a248cfcf5aa1dd/pyhmmer-0.8.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,378 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/71/2d/6d020e9303d2422ed199d3181a96117b25366bef87fd4e1d49f964644a72/pyhmmer-0.8.0-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,380 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/d6/df65848b5f3c3ea24a7a1a19fee4fd559377953d62e048bec4eba7b68043/pyhmmer-0.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,381 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/88/90/0f0af36b0861b542292872bf99696eb852bb2ffdae35e02532b924a91736/pyhmmer-0.8.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,382 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5d/f2/5bf9ca5b718e665b613914fa33b5299040268e289c8bd0b0794c5429981d/pyhmmer-0.8.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,400 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/19/cc/dd603f6c31b90171f2a74e8bc83cd981e3e5c9275035127f32b2e709e0c1/pyhmmer-0.8.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,401 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3b/96/a3db6773bdb59ce89c4b5806de0ea3d37b07c4bf930fab20dbc60873c737/pyhmmer-0.8.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,402 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/48/aa/173348482e94cb75d7ca8140cb644583294a51c947263b075ae98d7d451c/pyhmmer-0.8.2-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,402 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/d7/8cbf5c5a3b14fa0ffcbf08c862f2f9e2ac6753be228af04e8feaf724b4da/pyhmmer-0.8.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,403 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/ee/d6c8985da391696aaa09eb694172201c1eead5f366a8e61790c735c525e9/pyhmmer-0.8.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,403 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/d9/4e2212224e53a8b9373c0831a3c16d115dce9c6e2c847c867a1f1b8284fd/pyhmmer-0.8.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,404 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/f4/28ed40514d1f483669b4f80de51a7c1770ebd84255890ea468f641ef17c4/pyhmmer-0.8.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,404 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/64/845f17d9680d7703d8deaa729141dd33da734b9602cebc224a7533c0f239/pyhmmer-0.8.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,405 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/7c/17274676ff47462404c50fd7d03eb2793ab33d0405fb8830c674f29cd7e0/pyhmmer-0.8.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,405 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/6d/1fd4669db2d3a14e80bdb59377b0a537b26fb98798cbce9a4ccc2943d5b1/pyhmmer-0.8.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-06-07T22:46:49,407 Found link https://files.pythonhosted.org/packages/f1/c9/c047535dbe805d92a3d6fb8b602f19728c4c91d897a4da2f8d46f5f83cc6/pyhmmer-0.8.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.8.2 2023-06-07T22:46:49,408 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2023-06-07T22:46:49,409 Getting page https://www.piwheels.org/simple/pyhmmer/ 2023-06-07T22:46:49,411 Found index url https://www.piwheels.org/simple/ 2023-06-07T22:46:49,623 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2023-06-07T22:46:49,625 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2023-06-07T22:46:49,626 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2023-06-07T22:46:49,674 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2023-06-07T22:46:49,706 Collecting pyhmmer==0.8.2 2023-06-07T22:46:49,711 Created temporary directory: /tmp/pip-unpack-bthroq5k 2023-06-07T22:46:50,019 Downloading pyhmmer-0.8.2.tar.gz (11.0 MB) 2023-06-07T22:47:00,919 Added pyhmmer==0.8.2 from https://files.pythonhosted.org/packages/f1/c9/c047535dbe805d92a3d6fb8b602f19728c4c91d897a4da2f8d46f5f83cc6/pyhmmer-0.8.2.tar.gz to build tracker '/tmp/pip-build-tracker-2s0ohbvs' 2023-06-07T22:47:00,931 Created temporary directory: /tmp/pip-build-env-yekfdxw3 2023-06-07T22:47:00,952 Installing build dependencies: started 2023-06-07T22:47:00,954 Running command pip subprocess to install build dependencies 2023-06-07T22:47:03,909 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-06-07T22:47:04,793 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-07T22:47:09,027 Collecting setuptools>=46.4 2023-06-07T22:47:09,302 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB) 2023-06-07T22:47:12,986 Collecting cython~=0.29.16 2023-06-07T22:47:13,533 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.35-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2023-06-07T22:47:19,128 Installing collected packages: setuptools, cython 2023-06-07T22:47:29,406 Creating /tmp/pip-build-env-yekfdxw3/overlay/bin 2023-06-07T22:47:29,411 changing mode of /tmp/pip-build-env-yekfdxw3/overlay/bin/cygdb to 755 2023-06-07T22:47:29,416 changing mode of /tmp/pip-build-env-yekfdxw3/overlay/bin/cython to 755 2023-06-07T22:47:29,421 changing mode of /tmp/pip-build-env-yekfdxw3/overlay/bin/cythonize to 755 2023-06-07T22:47:29,471 Successfully installed cython-0.29.35 setuptools-67.8.0 2023-06-07T22:47:30,034 Installing build dependencies: finished with status 'done' 2023-06-07T22:47:30,046 Getting requirements to build wheel: started 2023-06-07T22:47:30,049 Running command Getting requirements to build wheel 2023-06-07T22:47:32,232 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-06-07T22:47:32,373 Getting requirements to build wheel: finished with status 'done' 2023-06-07T22:47:32,411 Installing backend dependencies: started 2023-06-07T22:47:32,414 Running command pip subprocess to install backend dependencies 2023-06-07T22:47:35,365 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-06-07T22:47:36,235 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-07T22:47:37,170 Collecting wheel 2023-06-07T22:47:37,212 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-06-07T22:47:41,834 Installing collected packages: wheel 2023-06-07T22:47:42,313 Creating /tmp/pip-build-env-yekfdxw3/normal/bin 2023-06-07T22:47:42,318 changing mode of /tmp/pip-build-env-yekfdxw3/normal/bin/wheel to 755 2023-06-07T22:47:42,347 Successfully installed wheel-0.40.0 2023-06-07T22:47:42,748 Installing backend dependencies: finished with status 'done' 2023-06-07T22:47:42,754 Created temporary directory: /tmp/pip-modern-metadata-bf1csg7j 2023-06-07T22:47:42,761 Preparing metadata (pyproject.toml): started 2023-06-07T22:47:42,764 Running command Preparing metadata (pyproject.toml) 2023-06-07T22:47:44,953 running dist_info 2023-06-07T22:47:44,986 creating /tmp/pip-modern-metadata-bf1csg7j/pyhmmer.egg-info 2023-06-07T22:47:44,998 writing /tmp/pip-modern-metadata-bf1csg7j/pyhmmer.egg-info/PKG-INFO 2023-06-07T22:47:45,005 writing dependency_links to /tmp/pip-modern-metadata-bf1csg7j/pyhmmer.egg-info/dependency_links.txt 2023-06-07T22:47:45,011 writing requirements to /tmp/pip-modern-metadata-bf1csg7j/pyhmmer.egg-info/requires.txt 2023-06-07T22:47:45,013 writing top-level names to /tmp/pip-modern-metadata-bf1csg7j/pyhmmer.egg-info/top_level.txt 2023-06-07T22:47:45,016 writing manifest file '/tmp/pip-modern-metadata-bf1csg7j/pyhmmer.egg-info/SOURCES.txt' 2023-06-07T22:47:45,142 reading manifest file '/tmp/pip-modern-metadata-bf1csg7j/pyhmmer.egg-info/SOURCES.txt' 2023-06-07T22:47:45,147 reading manifest template 'MANIFEST.in' 2023-06-07T22:47:46,570 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-06-07T22:47:46,571 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-06-07T22:47:46,575 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-06-07T22:47:46,579 no previously-included directories found matching 'vendor/easel/demotic' 2023-06-07T22:47:46,582 no previously-included directories found matching 'vendor/easel/documentation' 2023-06-07T22:47:46,586 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-06-07T22:47:46,589 no previously-included directories found matching 'vendor/easel/miniapps' 2023-06-07T22:47:46,593 no previously-included directories found matching 'vendor/easel/testsuite' 2023-06-07T22:47:46,596 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-06-07T22:47:46,600 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-06-07T22:47:46,604 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-06-07T22:47:46,607 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-06-07T22:47:46,611 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-06-07T22:47:46,614 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-06-07T22:47:46,618 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-06-07T22:47:46,618 adding license file 'COPYING' 2023-06-07T22:47:46,693 writing manifest file '/tmp/pip-modern-metadata-bf1csg7j/pyhmmer.egg-info/SOURCES.txt' 2023-06-07T22:47:46,697 creating '/tmp/pip-modern-metadata-bf1csg7j/pyhmmer-0.8.2.dist-info' 2023-06-07T22:47:47,080 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-07T22:47:47,099 Source in /tmp/pip-wheel-tgcb6ip5/pyhmmer_5aaa4d158ca54d9ea2ab55e09b77285c has version 0.8.2, which satisfies requirement pyhmmer==0.8.2 from https://files.pythonhosted.org/packages/f1/c9/c047535dbe805d92a3d6fb8b602f19728c4c91d897a4da2f8d46f5f83cc6/pyhmmer-0.8.2.tar.gz 2023-06-07T22:47:47,101 Removed pyhmmer==0.8.2 from https://files.pythonhosted.org/packages/f1/c9/c047535dbe805d92a3d6fb8b602f19728c4c91d897a4da2f8d46f5f83cc6/pyhmmer-0.8.2.tar.gz from build tracker '/tmp/pip-build-tracker-2s0ohbvs' 2023-06-07T22:47:47,122 Created temporary directory: /tmp/pip-unpack-ksbjioh2 2023-06-07T22:47:47,124 Building wheels for collected packages: pyhmmer 2023-06-07T22:47:47,134 Created temporary directory: /tmp/pip-wheel-xbn_o1__ 2023-06-07T22:47:47,134 Destination directory: /tmp/pip-wheel-xbn_o1__ 2023-06-07T22:47:47,140 Building wheel for pyhmmer (pyproject.toml): started 2023-06-07T22:47:47,142 Running command Building wheel for pyhmmer (pyproject.toml) 2023-06-07T22:47:49,392 running bdist_wheel 2023-06-07T22:47:49,428 running build 2023-06-07T22:47:49,429 running build_py 2023-06-07T22:47:49,449 creating build 2023-06-07T22:47:49,449 creating build/lib.linux-armv7l-cpython-37 2023-06-07T22:47:49,451 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:49,453 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:49,461 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:49,465 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:49,471 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-06-07T22:47:49,473 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-06-07T22:47:49,478 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-06-07T22:47:49,482 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-06-07T22:47:49,488 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-06-07T22:47:49,492 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-06-07T22:47:49,499 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,501 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,505 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,510 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,515 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,520 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,524 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,528 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,533 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,537 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,543 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,548 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,552 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,555 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,560 copying pyhmmer/tests/test_easel/test_gencode.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-06-07T22:47:49,567 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,568 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,573 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,577 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,583 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,587 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,592 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,596 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,602 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,607 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,611 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,615 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,620 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,625 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-06-07T22:47:49,629 running egg_info 2023-06-07T22:47:49,665 writing pyhmmer.egg-info/PKG-INFO 2023-06-07T22:47:49,671 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2023-06-07T22:47:49,677 writing requirements to pyhmmer.egg-info/requires.txt 2023-06-07T22:47:49,680 writing top-level names to pyhmmer.egg-info/top_level.txt 2023-06-07T22:47:49,720 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-06-07T22:47:49,768 reading manifest template 'MANIFEST.in' 2023-06-07T22:47:51,174 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-06-07T22:47:51,174 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-06-07T22:47:51,181 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-06-07T22:47:51,186 no previously-included directories found matching 'vendor/easel/demotic' 2023-06-07T22:47:51,192 no previously-included directories found matching 'vendor/easel/documentation' 2023-06-07T22:47:51,197 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-06-07T22:47:51,203 no previously-included directories found matching 'vendor/easel/miniapps' 2023-06-07T22:47:51,208 no previously-included directories found matching 'vendor/easel/testsuite' 2023-06-07T22:47:51,213 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-06-07T22:47:51,218 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-06-07T22:47:51,223 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-06-07T22:47:51,228 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-06-07T22:47:51,233 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-06-07T22:47:51,238 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-06-07T22:47:51,243 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-06-07T22:47:51,244 adding license file 'COPYING' 2023-06-07T22:47:51,345 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-06-07T22:47:51,368 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.fileobj' is absent from the `packages` configuration. 2023-06-07T22:47:51,368 !! 2023-06-07T22:47:51,369 ******************************************************************************** 2023-06-07T22:47:51,369 ############################ 2023-06-07T22:47:51,370 # Package would be ignored # 2023-06-07T22:47:51,370 ############################ 2023-06-07T22:47:51,371 Python recognizes 'pyhmmer.fileobj' as an importable package[^1], 2023-06-07T22:47:51,371 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,372 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,372 package, please make sure that 'pyhmmer.fileobj' is explicitly added 2023-06-07T22:47:51,373 to the `packages` configuration field. 2023-06-07T22:47:51,373 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,375 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,376 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,377 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,378 If you don't want 'pyhmmer.fileobj' to be distributed and are 2023-06-07T22:47:51,378 already explicitly excluding 'pyhmmer.fileobj' via 2023-06-07T22:47:51,378 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,379 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,379 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,380 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,381 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,382 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,382 even if it does not contain any `.py` files. 2023-06-07T22:47:51,382 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,383 directory, all directories are treated like packages. 2023-06-07T22:47:51,383 ******************************************************************************** 2023-06-07T22:47:51,384 !! 2023-06-07T22:47:51,384 check.warn(importable) 2023-06-07T22:47:51,385 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.reexports' is absent from the `packages` configuration. 2023-06-07T22:47:51,385 !! 2023-06-07T22:47:51,386 ******************************************************************************** 2023-06-07T22:47:51,386 ############################ 2023-06-07T22:47:51,386 # Package would be ignored # 2023-06-07T22:47:51,387 ############################ 2023-06-07T22:47:51,387 Python recognizes 'pyhmmer.reexports' as an importable package[^1], 2023-06-07T22:47:51,388 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,388 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,389 package, please make sure that 'pyhmmer.reexports' is explicitly added 2023-06-07T22:47:51,389 to the `packages` configuration field. 2023-06-07T22:47:51,390 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,390 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,390 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,391 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,392 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,393 If you don't want 'pyhmmer.reexports' to be distributed and are 2023-06-07T22:47:51,393 already explicitly excluding 'pyhmmer.reexports' via 2023-06-07T22:47:51,393 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,394 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,394 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,395 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,395 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,396 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,397 even if it does not contain any `.py` files. 2023-06-07T22:47:51,397 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,397 directory, all directories are treated like packages. 2023-06-07T22:47:51,398 ******************************************************************************** 2023-06-07T22:47:51,398 !! 2023-06-07T22:47:51,399 check.warn(importable) 2023-06-07T22:47:51,399 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data' is absent from the `packages` configuration. 2023-06-07T22:47:51,399 !! 2023-06-07T22:47:51,400 ******************************************************************************** 2023-06-07T22:47:51,400 ############################ 2023-06-07T22:47:51,401 # Package would be ignored # 2023-06-07T22:47:51,401 ############################ 2023-06-07T22:47:51,401 Python recognizes 'pyhmmer.tests.data' as an importable package[^1], 2023-06-07T22:47:51,402 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,403 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,403 package, please make sure that 'pyhmmer.tests.data' is explicitly added 2023-06-07T22:47:51,403 to the `packages` configuration field. 2023-06-07T22:47:51,404 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,404 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,405 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,405 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,406 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,407 If you don't want 'pyhmmer.tests.data' to be distributed and are 2023-06-07T22:47:51,407 already explicitly excluding 'pyhmmer.tests.data' via 2023-06-07T22:47:51,407 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,408 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,408 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,409 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,409 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,410 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,411 even if it does not contain any `.py` files. 2023-06-07T22:47:51,411 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,412 directory, all directories are treated like packages. 2023-06-07T22:47:51,412 ******************************************************************************** 2023-06-07T22:47:51,413 !! 2023-06-07T22:47:51,413 check.warn(importable) 2023-06-07T22:47:51,413 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms' is absent from the `packages` configuration. 2023-06-07T22:47:51,414 !! 2023-06-07T22:47:51,414 ******************************************************************************** 2023-06-07T22:47:51,415 ############################ 2023-06-07T22:47:51,415 # Package would be ignored # 2023-06-07T22:47:51,415 ############################ 2023-06-07T22:47:51,416 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package[^1], 2023-06-07T22:47:51,416 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,417 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,417 package, please make sure that 'pyhmmer.tests.data.hmms' is explicitly added 2023-06-07T22:47:51,417 to the `packages` configuration field. 2023-06-07T22:47:51,418 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,419 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,419 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,421 If you don't want 'pyhmmer.tests.data.hmms' to be distributed and are 2023-06-07T22:47:51,421 already explicitly excluding 'pyhmmer.tests.data.hmms' via 2023-06-07T22:47:51,421 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,422 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,422 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,423 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,424 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,425 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,425 even if it does not contain any `.py` files. 2023-06-07T22:47:51,425 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,426 directory, all directories are treated like packages. 2023-06-07T22:47:51,426 ******************************************************************************** 2023-06-07T22:47:51,427 !! 2023-06-07T22:47:51,427 check.warn(importable) 2023-06-07T22:47:51,427 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.bin' is absent from the `packages` configuration. 2023-06-07T22:47:51,428 !! 2023-06-07T22:47:51,428 ******************************************************************************** 2023-06-07T22:47:51,429 ############################ 2023-06-07T22:47:51,429 # Package would be ignored # 2023-06-07T22:47:51,429 ############################ 2023-06-07T22:47:51,430 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package[^1], 2023-06-07T22:47:51,430 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,431 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,431 package, please make sure that 'pyhmmer.tests.data.hmms.bin' is explicitly added 2023-06-07T22:47:51,431 to the `packages` configuration field. 2023-06-07T22:47:51,432 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,432 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,432 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,433 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,434 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,434 If you don't want 'pyhmmer.tests.data.hmms.bin' to be distributed and are 2023-06-07T22:47:51,435 already explicitly excluding 'pyhmmer.tests.data.hmms.bin' via 2023-06-07T22:47:51,435 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,435 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,435 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,436 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,437 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,438 even if it does not contain any `.py` files. 2023-06-07T22:47:51,438 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,438 directory, all directories are treated like packages. 2023-06-07T22:47:51,439 ******************************************************************************** 2023-06-07T22:47:51,439 !! 2023-06-07T22:47:51,439 check.warn(importable) 2023-06-07T22:47:51,440 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.db' is absent from the `packages` configuration. 2023-06-07T22:47:51,440 !! 2023-06-07T22:47:51,441 ******************************************************************************** 2023-06-07T22:47:51,441 ############################ 2023-06-07T22:47:51,441 # Package would be ignored # 2023-06-07T22:47:51,443 ############################ 2023-06-07T22:47:51,443 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package[^1], 2023-06-07T22:47:51,444 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,444 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,445 package, please make sure that 'pyhmmer.tests.data.hmms.db' is explicitly added 2023-06-07T22:47:51,445 to the `packages` configuration field. 2023-06-07T22:47:51,445 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,446 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,446 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,447 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,447 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,448 If you don't want 'pyhmmer.tests.data.hmms.db' to be distributed and are 2023-06-07T22:47:51,448 already explicitly excluding 'pyhmmer.tests.data.hmms.db' via 2023-06-07T22:47:51,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,449 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,449 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,450 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,450 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,451 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,452 even if it does not contain any `.py` files. 2023-06-07T22:47:51,452 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,452 directory, all directories are treated like packages. 2023-06-07T22:47:51,453 ******************************************************************************** 2023-06-07T22:47:51,453 !! 2023-06-07T22:47:51,454 check.warn(importable) 2023-06-07T22:47:51,454 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.txt' is absent from the `packages` configuration. 2023-06-07T22:47:51,454 !! 2023-06-07T22:47:51,455 ******************************************************************************** 2023-06-07T22:47:51,455 ############################ 2023-06-07T22:47:51,455 # Package would be ignored # 2023-06-07T22:47:51,456 ############################ 2023-06-07T22:47:51,456 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package[^1], 2023-06-07T22:47:51,456 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,457 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,457 package, please make sure that 'pyhmmer.tests.data.hmms.txt' is explicitly added 2023-06-07T22:47:51,457 to the `packages` configuration field. 2023-06-07T22:47:51,458 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,458 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,459 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,459 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,460 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,460 If you don't want 'pyhmmer.tests.data.hmms.txt' to be distributed and are 2023-06-07T22:47:51,461 already explicitly excluding 'pyhmmer.tests.data.hmms.txt' via 2023-06-07T22:47:51,461 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,462 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,462 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,463 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,464 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,464 even if it does not contain any `.py` files. 2023-06-07T22:47:51,465 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,465 directory, all directories are treated like packages. 2023-06-07T22:47:51,466 ******************************************************************************** 2023-06-07T22:47:51,466 !! 2023-06-07T22:47:51,467 check.warn(importable) 2023-06-07T22:47:51,467 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.txt2' is absent from the `packages` configuration. 2023-06-07T22:47:51,468 !! 2023-06-07T22:47:51,468 ******************************************************************************** 2023-06-07T22:47:51,469 ############################ 2023-06-07T22:47:51,469 # Package would be ignored # 2023-06-07T22:47:51,469 ############################ 2023-06-07T22:47:51,470 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package[^1], 2023-06-07T22:47:51,470 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,471 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,472 package, please make sure that 'pyhmmer.tests.data.hmms.txt2' is explicitly added 2023-06-07T22:47:51,472 to the `packages` configuration field. 2023-06-07T22:47:51,473 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,474 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,475 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,476 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,477 If you don't want 'pyhmmer.tests.data.hmms.txt2' to be distributed and are 2023-06-07T22:47:51,479 already explicitly excluding 'pyhmmer.tests.data.hmms.txt2' via 2023-06-07T22:47:51,479 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,480 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,481 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,483 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,484 even if it does not contain any `.py` files. 2023-06-07T22:47:51,485 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,486 directory, all directories are treated like packages. 2023-06-07T22:47:51,486 ******************************************************************************** 2023-06-07T22:47:51,487 !! 2023-06-07T22:47:51,488 check.warn(importable) 2023-06-07T22:47:51,488 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.jackhmmer' is absent from the `packages` configuration. 2023-06-07T22:47:51,488 !! 2023-06-07T22:47:51,489 ******************************************************************************** 2023-06-07T22:47:51,490 ############################ 2023-06-07T22:47:51,490 # Package would be ignored # 2023-06-07T22:47:51,492 ############################ 2023-06-07T22:47:51,493 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package[^1], 2023-06-07T22:47:51,493 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,494 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,495 package, please make sure that 'pyhmmer.tests.data.jackhmmer' is explicitly added 2023-06-07T22:47:51,495 to the `packages` configuration field. 2023-06-07T22:47:51,496 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,496 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,497 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,498 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,499 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,499 If you don't want 'pyhmmer.tests.data.jackhmmer' to be distributed and are 2023-06-07T22:47:51,500 already explicitly excluding 'pyhmmer.tests.data.jackhmmer' via 2023-06-07T22:47:51,500 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,500 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,502 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,505 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,506 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,507 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,508 even if it does not contain any `.py` files. 2023-06-07T22:47:51,508 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,508 directory, all directories are treated like packages. 2023-06-07T22:47:51,509 ******************************************************************************** 2023-06-07T22:47:51,511 !! 2023-06-07T22:47:51,511 check.warn(importable) 2023-06-07T22:47:51,512 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.msa' is absent from the `packages` configuration. 2023-06-07T22:47:51,512 !! 2023-06-07T22:47:51,513 ******************************************************************************** 2023-06-07T22:47:51,513 ############################ 2023-06-07T22:47:51,514 # Package would be ignored # 2023-06-07T22:47:51,514 ############################ 2023-06-07T22:47:51,514 Python recognizes 'pyhmmer.tests.data.msa' as an importable package[^1], 2023-06-07T22:47:51,515 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,516 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,516 package, please make sure that 'pyhmmer.tests.data.msa' is explicitly added 2023-06-07T22:47:51,516 to the `packages` configuration field. 2023-06-07T22:47:51,517 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,518 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,519 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,520 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,521 If you don't want 'pyhmmer.tests.data.msa' to be distributed and are 2023-06-07T22:47:51,521 already explicitly excluding 'pyhmmer.tests.data.msa' via 2023-06-07T22:47:51,522 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,522 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,523 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,523 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,524 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,525 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,526 even if it does not contain any `.py` files. 2023-06-07T22:47:51,526 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,527 directory, all directories are treated like packages. 2023-06-07T22:47:51,527 ******************************************************************************** 2023-06-07T22:47:51,528 !! 2023-06-07T22:47:51,528 check.warn(importable) 2023-06-07T22:47:51,529 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.seqs' is absent from the `packages` configuration. 2023-06-07T22:47:51,529 !! 2023-06-07T22:47:51,530 ******************************************************************************** 2023-06-07T22:47:51,531 ############################ 2023-06-07T22:47:51,531 # Package would be ignored # 2023-06-07T22:47:51,532 ############################ 2023-06-07T22:47:51,532 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package[^1], 2023-06-07T22:47:51,532 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,533 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,534 package, please make sure that 'pyhmmer.tests.data.seqs' is explicitly added 2023-06-07T22:47:51,534 to the `packages` configuration field. 2023-06-07T22:47:51,535 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,535 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,536 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,537 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,537 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,538 If you don't want 'pyhmmer.tests.data.seqs' to be distributed and are 2023-06-07T22:47:51,539 already explicitly excluding 'pyhmmer.tests.data.seqs' via 2023-06-07T22:47:51,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,540 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,541 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,542 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,544 even if it does not contain any `.py` files. 2023-06-07T22:47:51,544 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,545 directory, all directories are treated like packages. 2023-06-07T22:47:51,546 ******************************************************************************** 2023-06-07T22:47:51,547 !! 2023-06-07T22:47:51,548 check.warn(importable) 2023-06-07T22:47:51,548 /tmp/pip-build-env-yekfdxw3/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.tables' is absent from the `packages` configuration. 2023-06-07T22:47:51,549 !! 2023-06-07T22:47:51,550 ******************************************************************************** 2023-06-07T22:47:51,550 ############################ 2023-06-07T22:47:51,551 # Package would be ignored # 2023-06-07T22:47:51,551 ############################ 2023-06-07T22:47:51,551 Python recognizes 'pyhmmer.tests.data.tables' as an importable package[^1], 2023-06-07T22:47:51,552 but it is absent from setuptools' `packages` configuration. 2023-06-07T22:47:51,553 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-07T22:47:51,553 package, please make sure that 'pyhmmer.tests.data.tables' is explicitly added 2023-06-07T22:47:51,553 to the `packages` configuration field. 2023-06-07T22:47:51,554 Alternatively, you can also rely on setuptools' discovery methods 2023-06-07T22:47:51,554 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-07T22:47:51,555 instead of `find_packages(...)`/`find:`). 2023-06-07T22:47:51,556 You can read more about "package discovery" on setuptools documentation page: 2023-06-07T22:47:51,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-07T22:47:51,558 If you don't want 'pyhmmer.tests.data.tables' to be distributed and are 2023-06-07T22:47:51,558 already explicitly excluding 'pyhmmer.tests.data.tables' via 2023-06-07T22:47:51,558 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-07T22:47:51,560 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-07T22:47:51,561 combination with a more fine grained `package-data` configuration. 2023-06-07T22:47:51,562 You can read more about "package data files" on setuptools documentation page: 2023-06-07T22:47:51,563 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-07T22:47:51,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-07T22:47:51,564 even if it does not contain any `.py` files. 2023-06-07T22:47:51,565 On the other hand, currently there is no concept of package data 2023-06-07T22:47:51,565 directory, all directories are treated like packages. 2023-06-07T22:47:51,566 ******************************************************************************** 2023-06-07T22:47:51,568 !! 2023-06-07T22:47:51,569 check.warn(importable) 2023-06-07T22:47:51,569 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,569 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,570 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,570 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,571 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,571 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,572 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,572 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,572 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,573 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,573 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,574 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,574 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-06-07T22:47:51,576 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-06-07T22:47:51,578 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-06-07T22:47:51,583 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-06-07T22:47:51,589 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-06-07T22:47:51,591 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-06-07T22:47:51,595 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-06-07T22:47:51,600 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-06-07T22:47:51,604 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-06-07T22:47:51,631 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-06-07T22:47:51,636 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-06-07T22:47:51,641 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-06-07T22:47:51,646 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-06-07T22:47:51,650 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2023-06-07T22:47:51,652 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2023-06-07T22:47:51,657 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2023-06-07T22:47:51,666 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2023-06-07T22:47:51,671 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-06-07T22:47:51,673 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-06-07T22:47:51,680 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-06-07T22:47:51,688 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-06-07T22:47:51,697 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-06-07T22:47:51,823 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,824 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,834 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,840 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,844 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,853 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,860 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,874 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,880 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,885 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,894 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,904 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,919 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,926 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,932 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,941 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:51,951 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:52,224 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:52,290 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:52,295 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:52,439 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-06-07T22:47:52,599 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-06-07T22:47:52,602 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-06-07T22:47:52,619 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-06-07T22:47:52,629 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-06-07T22:47:52,643 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-06-07T22:47:52,654 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-06-07T22:47:52,672 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-06-07T22:47:52,694 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-06-07T22:47:52,994 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-06-07T22:47:52,996 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-06-07T22:47:53,006 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-06-07T22:47:53,017 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-06-07T22:47:53,028 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-06-07T22:47:53,277 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,279 copying pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,285 copying pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,290 copying pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,295 copying pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,302 copying pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,308 copying pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,314 copying pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,320 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,325 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,330 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-06-07T22:47:53,335 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-06-07T22:47:53,337 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-06-07T22:47:53,343 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-06-07T22:47:53,348 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-06-07T22:47:53,354 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-06-07T22:47:53,359 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-06-07T22:47:53,361 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-06-07T22:47:53,422 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-06-07T22:47:53,436 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-06-07T22:47:53,619 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-06-07T22:47:53,629 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-06-07T22:47:53,634 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-06-07T22:47:53,640 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-06-07T22:47:53,645 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,647 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,653 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,660 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,666 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,671 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,676 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,681 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,689 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,694 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-06-07T22:47:53,710 running build_clib 2023-06-07T22:47:53,730 creating build/temp.linux-armv7l-cpython-37 2023-06-07T22:47:53,732 generating "divsufsort.h" for divsufsort library 2023-06-07T22:47:53,733 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2023-06-07T22:47:53,738 generating "esl_config.h" for easel library 2023-06-07T22:47:53,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdio_h.c -o build/temp.linux-armv7l-cpython-37/have_stdio_h.o 2023-06-07T22:47:53,957 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-37/have_stdlib_h.o 2023-06-07T22:47:54,187 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_string_h.c -o build/temp.linux-armv7l-cpython-37/have_string_h.o 2023-06-07T22:47:54,376 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2023-06-07T22:47:54,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2023-06-07T22:47:54,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strings_h.c -o build/temp.linux-armv7l-cpython-37/have_strings_h.o 2023-06-07T22:47:54,961 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_stat_h.o 2023-06-07T22:47:55,152 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2023-06-07T22:47:55,367 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2023-06-07T22:47:55,567 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2023-06-07T22:47:55,747 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2023-06-07T22:47:56,031 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2023-06-07T22:47:56,295 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2023-06-07T22:47:56,640 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -Wno-all 2023-06-07T22:47:56,899 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.bin 2023-06-07T22:47:57,556 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2023-06-07T22:47:57,820 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2023-06-07T22:47:58,467 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2023-06-07T22:47:58,703 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2023-06-07T22:47:59,358 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -Wno-all 2023-06-07T22:47:59,624 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.bin 2023-06-07T22:48:00,280 /usr/bin/ld: /tmp/cc8FBQU4.ltrans0.ltrans.o: in function `main': 2023-06-07T22:48:00,281 :(.text.startup+0xc): undefined reference to `_mm_malloc' 2023-06-07T22:48:00,282 collect2: error: ld returned 1 exit status 2023-06-07T22:48:00,292 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2023-06-07T22:48:00,543 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2023-06-07T22:48:01,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -Wno-all 2023-06-07T22:48:01,460 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.bin 2023-06-07T22:48:02,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2023-06-07T22:48:02,319 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2023-06-07T22:48:02,958 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2023-06-07T22:48:03,177 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2023-06-07T22:48:03,832 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2023-06-07T22:48:04,065 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2023-06-07T22:48:04,726 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2023-06-07T22:48:04,982 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2023-06-07T22:48:05,639 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2023-06-07T22:48:05,857 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2023-06-07T22:48:06,520 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fseeko.c -o build/temp.linux-armv7l-cpython-37/have_fseeko.o -Wno-all 2023-06-07T22:48:06,764 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fseeko.o -o build/temp.linux-armv7l-cpython-37/have_fseeko.bin 2023-06-07T22:48:07,425 generating "p7_config.h" for hmmer library 2023-06-07T22:48:07,428 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2023-06-07T22:48:07,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2023-06-07T22:48:07,804 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2023-06-07T22:48:07,990 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2023-06-07T22:48:08,192 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2023-06-07T22:48:08,396 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2023-06-07T22:48:08,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2023-06-07T22:48:08,899 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2023-06-07T22:48:09,089 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_mkstemp.c -o build/temp.linux-armv7l-cpython-37/have_mkstemp.o -Wno-all 2023-06-07T22:48:09,345 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_mkstemp.o -o build/temp.linux-armv7l-cpython-37/have_mkstemp.bin 2023-06-07T22:48:10,002 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2023-06-07T22:48:10,244 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2023-06-07T22:48:10,900 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_putenv.c -o build/temp.linux-armv7l-cpython-37/have_putenv.o -Wno-all 2023-06-07T22:48:11,160 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_putenv.o -o build/temp.linux-armv7l-cpython-37/have_putenv.bin 2023-06-07T22:48:11,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2023-06-07T22:48:12,015 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2023-06-07T22:48:12,669 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2023-06-07T22:48:12,885 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2023-06-07T22:48:13,552 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2023-06-07T22:48:13,766 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2023-06-07T22:48:14,423 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2023-06-07T22:48:14,655 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2023-06-07T22:48:15,303 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2023-06-07T22:48:15,563 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2023-06-07T22:48:16,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2023-06-07T22:48:16,465 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2023-06-07T22:48:17,129 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getcwd.c -o build/temp.linux-armv7l-cpython-37/have_getcwd.o -Wno-all 2023-06-07T22:48:17,361 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getcwd.o -o build/temp.linux-armv7l-cpython-37/have_getcwd.bin 2023-06-07T22:48:18,032 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_chmod.c -o build/temp.linux-armv7l-cpython-37/have_chmod.o -Wno-all 2023-06-07T22:48:18,250 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_chmod.o -o build/temp.linux-armv7l-cpython-37/have_chmod.bin 2023-06-07T22:48:18,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stat.c -o build/temp.linux-armv7l-cpython-37/have_stat.o -Wno-all 2023-06-07T22:48:19,140 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_stat.o -o build/temp.linux-armv7l-cpython-37/have_stat.bin 2023-06-07T22:48:19,817 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fstat.c -o build/temp.linux-armv7l-cpython-37/have_fstat.o -Wno-all 2023-06-07T22:48:20,048 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fstat.o -o build/temp.linux-armv7l-cpython-37/have_fstat.bin 2023-06-07T22:48:20,734 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2023-06-07T22:48:21,020 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2023-06-07T22:48:21,688 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2023-06-07T22:48:21,720 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2023-06-07T22:48:21,754 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2023-06-07T22:48:21,770 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2023-06-07T22:48:21,771 creating build/temp.linux-armv7l-cpython-37/vendor 2023-06-07T22:48:21,772 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2023-06-07T22:48:21,774 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2023-06-07T22:48:21,776 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2023-06-07T22:48:31,401 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2023-06-07T22:48:31,469 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_randomseq.c, vendor/easel/esl_normal.c, vendor/easel/esl_alloc.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_graph.c, vendor/easel/esl_mem.c, vendor/easel/esl_wuss.c, vendor/easel/esl_gev.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_stack.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_swat.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_sqio.c, vendor/easel/esl_rand64.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_arr2.c, vendor/easel/esl_distance.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_arr3.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_json.c, vendor/easel/esl_regexp.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_cluster.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_histogram.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_paml.c, vendor/easel/esl_buffer.c, vendor/easel/esl_mpi.c, vendor/easel/esl_gamma.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_msa.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_random.c, vendor/easel/interface_lapack.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_recorder.c, vendor/easel/esl_composition.c, vendor/easel/esl_avx512.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_stats.c, vendor/easel/esl_sq.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_heap.c, vendor/easel/interface_gsl.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_sse.c, vendor/easel/esl_red_black.c, vendor/easel/esl_tree.c, vendor/easel/esl_hmm.c, vendor/easel/esl_cpu.c, vendor/easel/esl_threads.c, vendor/easel/esl_weibull.c, vendor/easel/esl_ssi.c, vendor/easel/esl_msafile.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_exponential.c, vendor/easel/esl_varint.c, vendor/easel/esl_neon.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_getopts.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_huffman.c, vendor/easel/esl_avx.c, vendor/easel/easel.c, vendor/easel/esl_vmx.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_gencode.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2023-06-07T22:48:31,478 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2023-06-07T22:48:31,481 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2023-06-07T22:48:31,483 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2023-06-07T22:48:31,484 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-06-07T22:48:31,484 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2023-06-07T22:48:31,486 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-06-07T22:48:31,489 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2023-06-07T22:48:31,498 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2023-06-07T22:48:31,504 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2023-06-07T22:48:31,518 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2023-06-07T22:48:32,290 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2023-06-07T22:48:32,290 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-06-07T22:48:32,291 return status; 2023-06-07T22:48:32,291 ^~~~~~ 2023-06-07T22:48:32,611 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2023-06-07T22:48:32,612 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2023-06-07T22:48:33,087 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2023-06-07T22:48:33,089 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:48:33,089 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2023-06-07T22:48:33,090 ^~ 2023-06-07T22:48:34,239 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2023-06-07T22:48:34,241 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2023-06-07T22:48:35,336 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2023-06-07T22:48:35,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2023-06-07T22:48:35,944 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2023-06-07T22:48:35,946 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2023-06-07T22:48:36,026 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2023-06-07T22:48:36,028 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2023-06-07T22:48:36,306 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2023-06-07T22:48:36,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2023-06-07T22:48:36,845 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2023-06-07T22:48:36,847 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2023-06-07T22:48:37,544 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2023-06-07T22:48:37,546 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2023-06-07T22:48:37,650 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2023-06-07T22:48:37,653 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2023-06-07T22:48:38,390 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2023-06-07T22:48:38,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2023-06-07T22:48:38,443 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2023-06-07T22:48:38,445 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2023-06-07T22:48:39,469 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2023-06-07T22:48:39,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2023-06-07T22:48:40,042 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2023-06-07T22:48:40,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2023-06-07T22:48:40,065 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2023-06-07T22:48:40,068 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2023-06-07T22:48:40,854 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2023-06-07T22:48:40,856 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2023-06-07T22:48:41,132 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2023-06-07T22:48:41,134 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2023-06-07T22:48:42,418 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2023-06-07T22:48:42,420 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2023-06-07T22:48:43,581 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2023-06-07T22:48:43,583 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2023-06-07T22:48:43,779 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2023-06-07T22:48:43,780 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2023-06-07T22:48:44,436 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2023-06-07T22:48:44,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2023-06-07T22:48:44,457 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2023-06-07T22:48:44,460 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2023-06-07T22:48:44,580 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2023-06-07T22:48:44,582 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2023-06-07T22:48:44,767 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2023-06-07T22:48:44,768 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:48:44,768 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2023-06-07T22:48:44,769 ^ 2023-06-07T22:48:45,036 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2023-06-07T22:48:45,039 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:48:45,040 if (alphatype != dd->abc_r->type) 2023-06-07T22:48:45,041 ^~ 2023-06-07T22:48:45,063 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2023-06-07T22:48:45,064 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:48:45,064 if (sq->n > max_seqlen) max_seqlen = sq->n; 2023-06-07T22:48:45,065 ^ 2023-06-07T22:48:45,065 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:48:45,065 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2023-06-07T22:48:45,066 ^ 2023-06-07T22:48:45,066 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:48:45,067 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2023-06-07T22:48:45,067 ^ 2023-06-07T22:48:45,068 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:48:45,068 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2023-06-07T22:48:45,069 ^ 2023-06-07T22:48:45,073 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:48:45,073 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2023-06-07T22:48:45,074 ^~ 2023-06-07T22:48:45,074 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:48:45,075 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2023-06-07T22:48:45,075 ^~ 2023-06-07T22:48:45,076 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:48:45,076 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2023-06-07T22:48:45,077 ^~ 2023-06-07T22:48:45,077 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:48:45,078 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2023-06-07T22:48:45,078 ^~ 2023-06-07T22:48:45,092 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-06-07T22:48:45,092 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-06-07T22:48:45,093 if (opt_fx) *opt_fx = fx; 2023-06-07T22:48:45,093 ~~~~~~~~^~~~ 2023-06-07T22:48:45,094 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-06-07T22:48:45,094 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2023-06-07T22:48:45,094 ~~^~~ 2023-06-07T22:48:45,095 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2023-06-07T22:48:45,095 double ax,bx,cx; 2023-06-07T22:48:45,096 ^~ 2023-06-07T22:48:45,096 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-06-07T22:48:45,097 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2023-06-07T22:48:45,097 ~^~~~~~~~~~~~~ 2023-06-07T22:48:45,098 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2023-06-07T22:48:45,098 double ax,bx,cx; 2023-06-07T22:48:45,099 ^~ 2023-06-07T22:48:45,118 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2023-06-07T22:48:45,119 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2023-06-07T22:48:45,157 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2023-06-07T22:48:45,158 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-06-07T22:48:45,159 } 2023-06-07T22:48:45,159 ^ 2023-06-07T22:48:45,177 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2023-06-07T22:48:45,177 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-06-07T22:48:45,178 } 2023-06-07T22:48:45,178 ^ 2023-06-07T22:48:46,606 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2023-06-07T22:48:46,608 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2023-06-07T22:48:47,439 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2023-06-07T22:48:47,441 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2023-06-07T22:48:47,621 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2023-06-07T22:48:47,623 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2023-06-07T22:48:48,503 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2023-06-07T22:48:48,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2023-06-07T22:48:49,142 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2023-06-07T22:48:49,144 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2023-06-07T22:48:49,664 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2023-06-07T22:48:49,665 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-06-07T22:48:49,665 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2023-06-07T22:48:49,666 ^ 2023-06-07T22:48:49,666 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2023-06-07T22:48:49,667 char *p; 2023-06-07T22:48:49,667 ^ 2023-06-07T22:48:50,654 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2023-06-07T22:48:50,656 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2023-06-07T22:48:52,945 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2023-06-07T22:48:52,948 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2023-06-07T22:48:53,257 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2023-06-07T22:48:53,259 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2023-06-07T22:48:53,346 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2023-06-07T22:48:53,347 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:48:53,347 if (rank > h->n) 2023-06-07T22:48:53,348 ^ 2023-06-07T22:48:53,777 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2023-06-07T22:48:53,777 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2023-06-07T22:48:53,942 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2023-06-07T22:48:53,944 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2023-06-07T22:48:55,606 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2023-06-07T22:48:55,608 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2023-06-07T22:48:56,107 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2023-06-07T22:48:56,108 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-06-07T22:48:56,108 int flags; 2023-06-07T22:48:56,108 ^~~~~ 2023-06-07T22:48:56,613 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2023-06-07T22:48:56,615 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2023-06-07T22:48:57,141 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2023-06-07T22:48:57,144 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2023-06-07T22:48:57,579 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2023-06-07T22:48:57,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2023-06-07T22:48:58,397 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2023-06-07T22:48:58,399 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2023-06-07T22:48:58,929 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2023-06-07T22:48:58,931 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2023-06-07T22:48:59,172 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2023-06-07T22:48:59,174 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2023-06-07T22:48:59,628 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2023-06-07T22:48:59,630 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2023-06-07T22:49:00,309 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2023-06-07T22:49:00,311 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2023-06-07T22:49:00,770 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2023-06-07T22:49:00,772 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2023-06-07T22:49:01,025 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2023-06-07T22:49:01,027 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2023-06-07T22:49:01,340 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2023-06-07T22:49:01,341 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,342 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2023-06-07T22:49:01,342 ^~ 2023-06-07T22:49:01,343 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,343 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-06-07T22:49:01,344 ^~ 2023-06-07T22:49:01,345 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,345 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-06-07T22:49:01,346 ^~ 2023-06-07T22:49:01,375 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2023-06-07T22:49:01,375 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,376 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-06-07T22:49:01,376 ^~ 2023-06-07T22:49:01,377 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2023-06-07T22:49:01,378 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,378 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-06-07T22:49:01,379 ^~ 2023-06-07T22:49:01,379 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2023-06-07T22:49:01,380 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,380 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-06-07T22:49:01,381 ^~ 2023-06-07T22:49:01,385 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2023-06-07T22:49:01,386 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,387 if (status != eslOK || nres != W) { 2023-06-07T22:49:01,387 ^~ 2023-06-07T22:49:01,388 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,388 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-06-07T22:49:01,389 ^~ 2023-06-07T22:49:01,409 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2023-06-07T22:49:01,410 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,410 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2023-06-07T22:49:01,411 ^ 2023-06-07T22:49:01,426 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,427 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2023-06-07T22:49:01,427 ^~ 2023-06-07T22:49:01,428 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2023-06-07T22:49:01,429 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,429 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2023-06-07T22:49:01,430 ^ 2023-06-07T22:49:01,430 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,431 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-06-07T22:49:01,431 ^~ 2023-06-07T22:49:01,432 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,432 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-06-07T22:49:01,433 ^ 2023-06-07T22:49:01,442 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,442 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-06-07T22:49:01,443 ^ 2023-06-07T22:49:01,443 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,444 if (inx < volume->start_seq || inx > volume->end_seq) { 2023-06-07T22:49:01,444 ^ 2023-06-07T22:49:01,444 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,445 if (inx < volume->start_seq || inx > volume->end_seq) { 2023-06-07T22:49:01,445 ^ 2023-06-07T22:49:01,446 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,446 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2023-06-07T22:49:01,447 ^ 2023-06-07T22:49:01,447 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,448 if (inx < volume->end_seq) break; 2023-06-07T22:49:01,448 ^ 2023-06-07T22:49:01,449 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,449 if (cnt >= ncbi->volumes) return eslFAIL; 2023-06-07T22:49:01,450 ^~ 2023-06-07T22:49:01,450 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,451 if (ncbi->index_start == -1 || inx > end) { 2023-06-07T22:49:01,451 ^~ 2023-06-07T22:49:01,452 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,452 if (ncbi->index_start == -1 || inx > end) { 2023-06-07T22:49:01,453 ^ 2023-06-07T22:49:01,453 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,453 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-06-07T22:49:01,454 ^~ 2023-06-07T22:49:01,462 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,462 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-06-07T22:49:01,463 ^~ 2023-06-07T22:49:01,463 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,464 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-06-07T22:49:01,464 ^~ 2023-06-07T22:49:01,467 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2023-06-07T22:49:01,467 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,468 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-06-07T22:49:01,468 ^~ 2023-06-07T22:49:01,469 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,470 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-06-07T22:49:01,470 ^~ 2023-06-07T22:49:01,471 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,472 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-06-07T22:49:01,472 ^~ 2023-06-07T22:49:01,483 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2023-06-07T22:49:01,484 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,484 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-06-07T22:49:01,485 ^~ 2023-06-07T22:49:01,487 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,487 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-06-07T22:49:01,488 ^~ 2023-06-07T22:49:01,494 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,495 if (ncbi->seq_apos - sq->doff < size) { 2023-06-07T22:49:01,495 ^ 2023-06-07T22:49:01,500 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2023-06-07T22:49:01,500 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,501 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-06-07T22:49:01,501 ^~ 2023-06-07T22:49:01,505 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,506 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-06-07T22:49:01,506 ^~ 2023-06-07T22:49:01,517 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2023-06-07T22:49:01,517 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,518 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-06-07T22:49:01,518 ^~ 2023-06-07T22:49:01,524 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,525 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2023-06-07T22:49:01,526 ^~ 2023-06-07T22:49:01,538 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2023-06-07T22:49:01,539 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,539 for (x = 0; x < strlen(ncbisym); ++x) { 2023-06-07T22:49:01,540 ^ 2023-06-07T22:49:01,540 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,541 for (y = 0; y < strlen(abc->sym); ++y) { 2023-06-07T22:49:01,541 ^ 2023-06-07T22:49:01,542 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,542 if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-06-07T22:49:01,542 ^~ 2023-06-07T22:49:01,544 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2023-06-07T22:49:01,545 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,545 for (x = 0; x < strlen(ncbisym); ++x) { 2023-06-07T22:49:01,546 ^ 2023-06-07T22:49:01,546 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,547 for (y = 0; y < strlen(abc->sym); ++y) { 2023-06-07T22:49:01,547 ^ 2023-06-07T22:49:01,547 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:01,548 if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-06-07T22:49:01,548 ^~ 2023-06-07T22:49:01,555 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2023-06-07T22:49:01,556 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:01,556 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2023-06-07T22:49:01,556 ^~ 2023-06-07T22:49:02,120 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2023-06-07T22:49:02,122 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2023-06-07T22:49:02,422 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2023-06-07T22:49:02,424 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2023-06-07T22:49:02,941 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2023-06-07T22:49:02,942 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2023-06-07T22:49:03,398 In file included from vendor/easel/esl_msafile2.c:26: 2023-06-07T22:49:03,399 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2023-06-07T22:49:03,399 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:03,400 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-06-07T22:49:03,400 ^ 2023-06-07T22:49:03,401 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-06-07T22:49:03,401 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-06-07T22:49:03,402 ^~~~~~~ 2023-06-07T22:49:03,403 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-06-07T22:49:03,404 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-06-07T22:49:03,404 ^~~ 2023-06-07T22:49:03,405 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-06-07T22:49:03,405 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-06-07T22:49:03,405 ^~~~~~~ 2023-06-07T22:49:03,406 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:03,406 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-06-07T22:49:03,407 ^ 2023-06-07T22:49:03,407 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-06-07T22:49:03,408 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-06-07T22:49:03,408 ^~~~~~~ 2023-06-07T22:49:03,408 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-06-07T22:49:03,409 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-06-07T22:49:03,409 ^~~ 2023-06-07T22:49:03,410 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-06-07T22:49:03,410 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-06-07T22:49:03,410 ^~~~~~~ 2023-06-07T22:49:03,682 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2023-06-07T22:49:03,684 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2023-06-07T22:49:04,389 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2023-06-07T22:49:04,391 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2023-06-07T22:49:05,574 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2023-06-07T22:49:05,576 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2023-06-07T22:49:06,060 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2023-06-07T22:49:06,060 static double stopwatch_getRealTime(void); 2023-06-07T22:49:06,061 ^~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:06,494 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2023-06-07T22:49:06,496 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2023-06-07T22:49:06,648 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2023-06-07T22:49:06,649 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2023-06-07T22:49:06,866 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2023-06-07T22:49:06,868 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2023-06-07T22:49:08,091 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2023-06-07T22:49:08,092 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2023-06-07T22:49:09,693 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2023-06-07T22:49:09,695 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2023-06-07T22:49:09,920 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2023-06-07T22:49:09,920 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2023-06-07T22:49:10,377 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2023-06-07T22:49:10,380 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-07T22:49:10,382 for (i = 0; i < a; i++) 2023-06-07T22:49:10,383 ^ 2023-06-07T22:49:10,400 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2023-06-07T22:49:10,402 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2023-06-07T22:49:10,584 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2023-06-07T22:49:10,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2023-06-07T22:49:11,900 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2023-06-07T22:49:11,903 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2023-06-07T22:49:12,240 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2023-06-07T22:49:12,243 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2023-06-07T22:49:12,260 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2023-06-07T22:49:12,265 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2023-06-07T22:49:12,470 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2023-06-07T22:49:12,473 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2023-06-07T22:49:12,532 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2023-06-07T22:49:12,532 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,533 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2023-06-07T22:49:12,534 ^~ 2023-06-07T22:49:12,559 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2023-06-07T22:49:12,560 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,560 if ((n+1) > ns->flen) ns->flen = n+1; 2023-06-07T22:49:12,561 ^ 2023-06-07T22:49:12,574 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2023-06-07T22:49:12,576 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,576 if (n > ns->plen) ns->plen = n; 2023-06-07T22:49:12,577 ^ 2023-06-07T22:49:12,582 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,582 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2023-06-07T22:49:12,583 ^ 2023-06-07T22:49:12,585 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2023-06-07T22:49:12,586 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,587 if (n > ns->slen) ns->slen = n; 2023-06-07T22:49:12,587 ^ 2023-06-07T22:49:12,592 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,593 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2023-06-07T22:49:12,594 ^ 2023-06-07T22:49:12,607 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2023-06-07T22:49:12,608 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,608 for (i = 0; i < ns->nprimary; i++) 2023-06-07T22:49:12,609 ^ 2023-06-07T22:49:12,613 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,614 for (i = 0; i < ns->nprimary; i++) 2023-06-07T22:49:12,614 ^ 2023-06-07T22:49:12,618 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,619 for (i = 0; i < ns->nsecondary; i++) 2023-06-07T22:49:12,619 ^ 2023-06-07T22:49:12,623 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,623 for (i = 0; i < ns->nsecondary; i++) 2023-06-07T22:49:12,624 ^ 2023-06-07T22:49:12,633 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2023-06-07T22:49:12,634 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,634 for (i = 0; i < ns->nprimary; i++) 2023-06-07T22:49:12,635 ^ 2023-06-07T22:49:12,638 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,639 for (i = 0; i < ns->nsecondary; i++) 2023-06-07T22:49:12,639 ^ 2023-06-07T22:49:12,653 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2023-06-07T22:49:12,654 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,655 for (i = 0; i < ns->nprimary; i++) { 2023-06-07T22:49:12,655 ^ 2023-06-07T22:49:12,658 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,659 for (i = 0; i < ns->nsecondary; i++) 2023-06-07T22:49:12,660 ^ 2023-06-07T22:49:12,662 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,663 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2023-06-07T22:49:12,664 ^ 2023-06-07T22:49:12,666 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,667 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2023-06-07T22:49:12,667 ^ 2023-06-07T22:49:12,670 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:12,671 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2023-06-07T22:49:12,671 ^ 2023-06-07T22:49:12,831 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2023-06-07T22:49:12,832 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-06-07T22:49:12,832 for (pos = 0; pos < sq->n; pos++) 2023-06-07T22:49:12,833 ^ 2023-06-07T22:49:12,833 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-06-07T22:49:12,834 for (pos = 1; pos <= sq->n; pos++) 2023-06-07T22:49:12,834 ^~ 2023-06-07T22:49:15,988 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2023-06-07T22:49:15,989 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2023-06-07T22:49:16,483 In file included from vendor/easel/esl_hmm.c:9: 2023-06-07T22:49:16,484 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2023-06-07T22:49:16,484 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:16,485 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-06-07T22:49:16,485 ^ 2023-06-07T22:49:16,486 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-06-07T22:49:16,486 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-06-07T22:49:16,487 ^~~~~~~ 2023-06-07T22:49:16,487 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-06-07T22:49:16,488 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-06-07T22:49:16,489 ^~~ 2023-06-07T22:49:16,489 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-06-07T22:49:16,490 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-06-07T22:49:16,490 ^~~~~~~ 2023-06-07T22:49:17,554 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2023-06-07T22:49:17,557 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2023-06-07T22:49:17,983 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2023-06-07T22:49:17,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2023-06-07T22:49:18,771 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2023-06-07T22:49:18,772 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2023-06-07T22:49:19,440 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2023-06-07T22:49:19,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2023-06-07T22:49:19,551 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2023-06-07T22:49:19,552 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2023-06-07T22:49:19,827 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2023-06-07T22:49:19,829 creating build/temp.linux-armv7l-cpython-37/build 2023-06-07T22:49:19,832 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2023-06-07T22:49:19,836 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2023-06-07T22:49:19,918 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2023-06-07T22:49:19,921 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2023-06-07T22:49:20,435 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2023-06-07T22:49:20,436 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-06-07T22:49:20,436 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2023-06-07T22:49:20,437 ^~~~~~~~~~~~~~~~ 2023-06-07T22:49:20,599 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2023-06-07T22:49:20,600 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:20,601 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2023-06-07T22:49:20,601 ^~ 2023-06-07T22:49:20,770 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2023-06-07T22:49:20,771 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-06-07T22:49:20,771 if (grp & cmask) { status = eslEOD; goto ERROR; } 2023-06-07T22:49:20,772 ~~~~^~~~~~~ 2023-06-07T22:49:21,168 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2023-06-07T22:49:21,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2023-06-07T22:49:21,197 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2023-06-07T22:49:21,200 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2023-06-07T22:49:21,483 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2023-06-07T22:49:21,485 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2023-06-07T22:49:21,687 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2023-06-07T22:49:21,687 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-06-07T22:49:21,688 for (h = 0; h < kh->hashsize; h++) 2023-06-07T22:49:21,689 ^ 2023-06-07T22:49:21,689 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2023-06-07T22:49:21,690 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:21,690 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-06-07T22:49:21,691 ^ 2023-06-07T22:49:21,691 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2023-06-07T22:49:21,692 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-06-07T22:49:21,692 for (h = 0; h < kh->hashsize; h++) 2023-06-07T22:49:21,693 ^ 2023-06-07T22:49:21,697 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2023-06-07T22:49:21,697 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:21,698 if (kh->nkeys > 3*kh->hashsize) 2023-06-07T22:49:21,698 ^ 2023-06-07T22:49:21,701 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2023-06-07T22:49:21,702 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:21,703 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-06-07T22:49:21,703 ^ 2023-06-07T22:49:21,707 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2023-06-07T22:49:21,708 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:21,708 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-06-07T22:49:21,709 ^ 2023-06-07T22:49:23,168 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2023-06-07T22:49:23,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2023-06-07T22:49:24,547 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2023-06-07T22:49:24,549 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2023-06-07T22:49:24,833 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2023-06-07T22:49:24,835 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2023-06-07T22:49:25,221 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2023-06-07T22:49:25,222 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:25,222 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2023-06-07T22:49:25,223 ^~ 2023-06-07T22:49:26,014 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2023-06-07T22:49:26,016 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2023-06-07T22:49:26,427 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2023-06-07T22:49:26,428 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:26,428 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2023-06-07T22:49:26,429 ^~ 2023-06-07T22:49:26,832 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2023-06-07T22:49:26,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2023-06-07T22:49:29,842 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2023-06-07T22:49:29,847 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2023-06-07T22:49:29,864 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2023-06-07T22:49:29,866 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2023-06-07T22:49:36,002 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2023-06-07T22:49:36,003 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2023-06-07T22:49:37,591 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2023-06-07T22:49:38,175 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2023-06-07T22:49:38,187 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2023-06-07T22:49:38,188 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2023-06-07T22:49:38,189 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2023-06-07T22:49:38,190 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2023-06-07T22:49:38,191 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2023-06-07T22:49:38,192 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2023-06-07T22:49:38,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2023-06-07T22:49:38,195 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2023-06-07T22:49:38,196 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2023-06-07T22:49:38,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2023-06-07T22:49:38,677 In file included from vendor/hmmer/src/generic_msv.c:20: 2023-06-07T22:49:38,678 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:38,678 #error "No vector implementation enabled" 2023-06-07T22:49:38,679 ^~~~~ 2023-06-07T22:49:38,679 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,680 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:38,681 ^~~~~~ 2023-06-07T22:49:38,682 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,682 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:38,683 ^~~~~~ 2023-06-07T22:49:38,684 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,685 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:38,685 ^~~~~~ 2023-06-07T22:49:38,686 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,687 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:38,691 ^~~~~~ 2023-06-07T22:49:38,692 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,692 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:38,695 ^~~~~~~~~~~ 2023-06-07T22:49:38,699 P7_PROFILE 2023-06-07T22:49:38,700 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,701 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:38,701 ^~~~~~~~~~~ 2023-06-07T22:49:38,702 P7_PROFILE 2023-06-07T22:49:38,703 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,706 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:38,709 ^~~~~~~~~~~ 2023-06-07T22:49:38,709 P7_PROFILE 2023-06-07T22:49:38,710 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,716 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:38,716 ^~~~~~~~~~~ 2023-06-07T22:49:38,717 P7_PROFILE 2023-06-07T22:49:38,718 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,718 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:38,719 ^~~~~~~~~~~ 2023-06-07T22:49:38,720 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,721 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:38,721 ^~~~~~~~~~~ 2023-06-07T22:49:38,722 P7_PROFILE 2023-06-07T22:49:38,723 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,723 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:38,724 ^~~~~~~~~~~ 2023-06-07T22:49:38,724 P7_PROFILE 2023-06-07T22:49:38,725 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,725 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,726 ^~~~~~~~~~~ 2023-06-07T22:49:38,726 P7_PROFILE 2023-06-07T22:49:38,727 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,728 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,728 ^~~~~~ 2023-06-07T22:49:38,729 P7_GMX 2023-06-07T22:49:38,729 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,730 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,730 ^~~~~~ 2023-06-07T22:49:38,731 P7_GMX 2023-06-07T22:49:38,732 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,732 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,733 ^~~~~~ 2023-06-07T22:49:38,734 P7_GMX 2023-06-07T22:49:38,734 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,735 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,735 ^~~~~~ 2023-06-07T22:49:38,736 P7_GMX 2023-06-07T22:49:38,737 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,737 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:38,738 ^~~~~~~~~~~ 2023-06-07T22:49:38,738 P7_PROFILE 2023-06-07T22:49:38,739 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,739 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:38,740 ^~~~~~~~~~~ 2023-06-07T22:49:38,741 P7_PROFILE 2023-06-07T22:49:38,755 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,755 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:38,756 ^~~~~~~~~~~ 2023-06-07T22:49:38,757 P7_PROFILE 2023-06-07T22:49:38,757 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,758 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:38,759 ^~~~~~~~~~~ 2023-06-07T22:49:38,759 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,760 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:38,760 ^~~~~~~~~~~ 2023-06-07T22:49:38,761 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,762 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:38,762 ^~~~~~~~~~~ 2023-06-07T22:49:38,763 P7_PROFILE 2023-06-07T22:49:38,764 In file included from vendor/hmmer/src/build.c:32: 2023-06-07T22:49:38,764 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:38,765 #error "No vector implementation enabled" 2023-06-07T22:49:38,765 ^~~~~ 2023-06-07T22:49:38,766 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,766 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:38,767 ^~~~~~~~~~~ 2023-06-07T22:49:38,768 P7_PROFILE 2023-06-07T22:49:38,769 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,770 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:38,770 ^~~~~~ 2023-06-07T22:49:38,771 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,772 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:38,772 ^~~~~~ 2023-06-07T22:49:38,773 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,773 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:38,774 ^~~~~~ 2023-06-07T22:49:38,775 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,775 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:38,776 ^~~~~~ 2023-06-07T22:49:38,777 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,777 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:38,778 ^~~~~~~~~~~ 2023-06-07T22:49:38,779 P7_PROFILE 2023-06-07T22:49:38,779 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,780 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:38,780 ^~~~~~~~~~~ 2023-06-07T22:49:38,781 P7_PROFILE 2023-06-07T22:49:38,781 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,782 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:38,782 ^~~~~~~~~~~ 2023-06-07T22:49:38,783 P7_PROFILE 2023-06-07T22:49:38,783 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,784 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:38,784 ^~~~~~~~~~~ 2023-06-07T22:49:38,785 P7_PROFILE 2023-06-07T22:49:38,786 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,786 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:38,787 ^~~~~~~~~~~ 2023-06-07T22:49:38,788 P7_PROFILE 2023-06-07T22:49:38,788 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,789 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:38,789 ^~~~~~~~~~~ 2023-06-07T22:49:38,790 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2023-06-07T22:49:38,791 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:38,791 #error "No vector implementation enabled" 2023-06-07T22:49:38,792 ^~~~~ 2023-06-07T22:49:38,793 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,794 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:38,794 ^~~~~~ 2023-06-07T22:49:38,795 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,796 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:38,797 ^~~~~~~~~~~ 2023-06-07T22:49:38,798 P7_PROFILE 2023-06-07T22:49:38,798 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,799 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:38,800 ^~~~~~ 2023-06-07T22:49:38,801 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,802 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:38,803 ^~~~~~ 2023-06-07T22:49:38,804 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,805 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:38,806 ^~~~~~ 2023-06-07T22:49:38,806 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,807 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:38,808 ^~~~~~~~~~~ 2023-06-07T22:49:38,809 P7_PROFILE 2023-06-07T22:49:38,809 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,810 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:38,810 ^~~~~~~~~~~ 2023-06-07T22:49:38,811 P7_PROFILE 2023-06-07T22:49:38,812 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,813 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,813 ^~~~~~~~~~~ 2023-06-07T22:49:38,814 P7_PROFILE 2023-06-07T22:49:38,814 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,815 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:38,815 ^~~~~~~~~~~ 2023-06-07T22:49:38,816 P7_PROFILE 2023-06-07T22:49:38,817 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,817 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,818 ^~~~~~ 2023-06-07T22:49:38,819 P7_GMX 2023-06-07T22:49:38,820 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,820 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:38,821 ^~~~~~~~~~~ 2023-06-07T22:49:38,822 P7_PROFILE 2023-06-07T22:49:38,823 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,824 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,825 ^~~~~~ 2023-06-07T22:49:38,825 P7_GMX 2023-06-07T22:49:38,826 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,827 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:38,828 ^~~~~~~~~~~ 2023-06-07T22:49:38,829 P7_PROFILE 2023-06-07T22:49:38,830 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,831 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,832 ^~~~~~ 2023-06-07T22:49:38,833 P7_GMX 2023-06-07T22:49:38,834 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,834 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:38,835 ^~~~~~~~~~~ 2023-06-07T22:49:38,835 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,836 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,837 ^~~~~~ 2023-06-07T22:49:38,838 P7_GMX 2023-06-07T22:49:38,838 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,839 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:38,839 ^~~~~~~~~~~ 2023-06-07T22:49:38,840 P7_PROFILE 2023-06-07T22:49:38,841 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,841 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:38,842 ^~~~~~~~~~~ 2023-06-07T22:49:38,842 P7_PROFILE 2023-06-07T22:49:38,843 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,844 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:38,844 ^~~~~~~~~~~ 2023-06-07T22:49:38,845 P7_PROFILE 2023-06-07T22:49:38,846 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,847 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:38,847 ^~~~~~~~~~~ 2023-06-07T22:49:38,848 P7_PROFILE 2023-06-07T22:49:38,848 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,849 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,850 ^~~~~~~~~~~ 2023-06-07T22:49:38,850 P7_PROFILE 2023-06-07T22:49:38,851 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,851 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:38,852 ^~~~~~~~~~~ 2023-06-07T22:49:38,853 P7_PROFILE 2023-06-07T22:49:38,853 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,854 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:38,854 ^~~~~~~~~~~ 2023-06-07T22:49:38,855 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,855 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:38,856 ^~~~~~~~~~~ 2023-06-07T22:49:38,856 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,857 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,857 ^~~~~~ 2023-06-07T22:49:38,858 P7_GMX 2023-06-07T22:49:38,858 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,859 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:38,860 ^~~~~~~~~~~ 2023-06-07T22:49:38,860 P7_PROFILE 2023-06-07T22:49:38,860 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,861 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,862 ^~~~~~ 2023-06-07T22:49:38,863 P7_GMX 2023-06-07T22:49:38,864 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,864 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:38,865 ^~~~~~~~~~~ 2023-06-07T22:49:38,865 P7_PROFILE 2023-06-07T22:49:38,866 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,866 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,866 ^~~~~~ 2023-06-07T22:49:38,867 P7_GMX 2023-06-07T22:49:38,867 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:38,868 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:38,869 ^~~~~~ 2023-06-07T22:49:38,869 P7_GMX 2023-06-07T22:49:38,870 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,871 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:38,872 ^~~~~~~~~~~ 2023-06-07T22:49:38,872 P7_PROFILE 2023-06-07T22:49:38,873 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,873 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:38,874 ^~~~~~~~~~~ 2023-06-07T22:49:38,874 P7_PROFILE 2023-06-07T22:49:38,874 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2023-06-07T22:49:38,875 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,876 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:38,876 ^~~~~~~~~~~ 2023-06-07T22:49:38,876 P7_PROFILE 2023-06-07T22:49:38,877 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,877 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:38,878 ^~~~~~~~~~~ 2023-06-07T22:49:38,878 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:38,879 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:38,879 ^~~~~~~~~~~ 2023-06-07T22:49:38,879 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2023-06-07T22:49:38,880 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,880 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:38,881 ^~~~~~~~~~~ 2023-06-07T22:49:38,881 P7_PROFILE 2023-06-07T22:49:38,882 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,882 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:38,883 ^~~~~~~~~~~ 2023-06-07T22:49:38,883 P7_PROFILE 2023-06-07T22:49:38,884 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,885 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:38,885 ^~~~~~~~~~~ 2023-06-07T22:49:38,886 P7_PROFILE 2023-06-07T22:49:38,886 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,887 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:38,887 ^~~~~~~~~~~ 2023-06-07T22:49:38,887 P7_PROFILE 2023-06-07T22:49:38,943 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2023-06-07T22:49:38,945 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2023-06-07T22:49:38,972 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2023-06-07T22:49:38,974 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2023-06-07T22:49:38,984 In file included from vendor/hmmer/src/errors.c:19: 2023-06-07T22:49:38,984 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:38,985 #error "No vector implementation enabled" 2023-06-07T22:49:38,985 ^~~~~ 2023-06-07T22:49:38,988 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,989 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:38,989 ^~~~~~ 2023-06-07T22:49:38,990 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,991 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:38,992 ^~~~~~ 2023-06-07T22:49:38,993 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,993 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:38,994 ^~~~~~ 2023-06-07T22:49:38,994 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:38,995 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:38,995 ^~~~~~ 2023-06-07T22:49:38,996 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:38,997 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:38,997 ^~~~~~~~~~~ 2023-06-07T22:49:39,010 P7_PROFILE 2023-06-07T22:49:39,011 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,012 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:39,013 ^~~~~~~~~~~ 2023-06-07T22:49:39,013 P7_PROFILE 2023-06-07T22:49:39,014 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,015 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:39,016 ^~~~~~~~~~~ 2023-06-07T22:49:39,016 P7_PROFILE 2023-06-07T22:49:39,017 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,017 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:39,018 ^~~~~~~~~~~ 2023-06-07T22:49:39,018 P7_PROFILE 2023-06-07T22:49:39,019 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,019 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:39,020 ^~~~~~~~~~~ 2023-06-07T22:49:39,021 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,021 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:39,022 ^~~~~~~~~~~ 2023-06-07T22:49:39,023 P7_PROFILE 2023-06-07T22:49:39,024 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,024 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:39,025 ^~~~~~~~~~~ 2023-06-07T22:49:39,025 P7_PROFILE 2023-06-07T22:49:39,026 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,027 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,027 ^~~~~~~~~~~ 2023-06-07T22:49:39,028 P7_PROFILE 2023-06-07T22:49:39,029 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,029 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,030 ^~~~~~ 2023-06-07T22:49:39,030 P7_GMX 2023-06-07T22:49:39,031 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,032 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,032 ^~~~~~ 2023-06-07T22:49:39,033 P7_GMX 2023-06-07T22:49:39,042 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,043 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,044 ^~~~~~ 2023-06-07T22:49:39,044 P7_GMX 2023-06-07T22:49:39,045 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,046 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,046 ^~~~~~ 2023-06-07T22:49:39,047 P7_GMX 2023-06-07T22:49:39,051 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,052 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:39,052 ^~~~~~~~~~~ 2023-06-07T22:49:39,053 P7_PROFILE 2023-06-07T22:49:39,058 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,059 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:39,060 ^~~~~~~~~~~ 2023-06-07T22:49:39,060 P7_PROFILE 2023-06-07T22:49:39,062 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,062 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:39,063 ^~~~~~~~~~~ 2023-06-07T22:49:39,064 P7_PROFILE 2023-06-07T22:49:39,065 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,066 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:39,066 ^~~~~~~~~~~ 2023-06-07T22:49:39,067 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,068 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:39,068 ^~~~~~~~~~~ 2023-06-07T22:49:39,069 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,070 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:39,070 ^~~~~~~~~~~ 2023-06-07T22:49:39,070 P7_PROFILE 2023-06-07T22:49:39,071 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,072 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:39,072 ^~~~~~~~~~~ 2023-06-07T22:49:39,073 P7_PROFILE 2023-06-07T22:49:39,102 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,103 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:39,104 ^~~~~~~~~~~ 2023-06-07T22:49:39,104 P7_PROFILE 2023-06-07T22:49:39,130 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2023-06-07T22:49:39,133 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2023-06-07T22:49:39,209 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2023-06-07T22:49:39,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2023-06-07T22:49:39,274 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2023-06-07T22:49:39,276 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2023-06-07T22:49:39,472 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2023-06-07T22:49:39,472 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2023-06-07T22:49:39,476 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2023-06-07T22:49:39,476 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:39,477 #error "No vector implementation enabled" 2023-06-07T22:49:39,477 ^~~~~ 2023-06-07T22:49:39,481 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:39,482 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:39,482 ^~~~~~ 2023-06-07T22:49:39,483 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:39,483 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:39,484 ^~~~~~ 2023-06-07T22:49:39,484 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:39,485 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:39,487 ^~~~~~ 2023-06-07T22:49:39,487 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:39,488 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:39,488 ^~~~~~ 2023-06-07T22:49:39,489 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,490 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:39,490 ^~~~~~~~~~~ 2023-06-07T22:49:39,491 P7_PROFILE 2023-06-07T22:49:39,496 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,497 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:39,497 ^~~~~~~~~~~ 2023-06-07T22:49:39,498 P7_PROFILE 2023-06-07T22:49:39,502 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,502 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:39,503 ^~~~~~~~~~~ 2023-06-07T22:49:39,504 P7_PROFILE 2023-06-07T22:49:39,507 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,508 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:39,508 ^~~~~~~~~~~ 2023-06-07T22:49:39,509 P7_PROFILE 2023-06-07T22:49:39,509 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,510 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:39,510 ^~~~~~~~~~~ 2023-06-07T22:49:39,521 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,522 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:39,523 ^~~~~~~~~~~ 2023-06-07T22:49:39,524 P7_PROFILE 2023-06-07T22:49:39,525 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2023-06-07T22:49:39,525 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,526 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:39,527 ^~~~~~~~~~~ 2023-06-07T22:49:39,527 P7_PROFILE 2023-06-07T22:49:39,528 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2023-06-07T22:49:39,529 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,529 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,530 ^~~~~~~~~~~ 2023-06-07T22:49:39,531 P7_PROFILE 2023-06-07T22:49:39,532 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,533 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,533 ^~~~~~ 2023-06-07T22:49:39,534 P7_GMX 2023-06-07T22:49:39,535 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,536 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,536 ^~~~~~ 2023-06-07T22:49:39,537 P7_GMX 2023-06-07T22:49:39,538 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,538 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,539 ^~~~~~ 2023-06-07T22:49:39,539 P7_GMX 2023-06-07T22:49:39,542 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,542 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,543 ^~~~~~ 2023-06-07T22:49:39,543 P7_GMX 2023-06-07T22:49:39,544 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,545 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:39,545 ^~~~~~~~~~~ 2023-06-07T22:49:39,546 P7_PROFILE 2023-06-07T22:49:39,549 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,549 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:39,550 ^~~~~~~~~~~ 2023-06-07T22:49:39,550 P7_PROFILE 2023-06-07T22:49:39,560 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,560 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:39,561 ^~~~~~~~~~~ 2023-06-07T22:49:39,561 P7_PROFILE 2023-06-07T22:49:39,562 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,563 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:39,564 ^~~~~~~~~~~ 2023-06-07T22:49:39,564 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,565 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:39,565 ^~~~~~~~~~~ 2023-06-07T22:49:39,566 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,566 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:39,567 ^~~~~~~~~~~ 2023-06-07T22:49:39,568 P7_PROFILE 2023-06-07T22:49:39,569 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,569 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:39,570 ^~~~~~~~~~~ 2023-06-07T22:49:39,570 P7_PROFILE 2023-06-07T22:49:39,572 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,573 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:39,574 ^~~~~~~~~~~ 2023-06-07T22:49:39,574 P7_PROFILE 2023-06-07T22:49:39,623 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2023-06-07T22:49:39,626 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2023-06-07T22:49:39,793 In file included from vendor/hmmer/src/modelconfig.c:25: 2023-06-07T22:49:39,794 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:39,794 #error "No vector implementation enabled" 2023-06-07T22:49:39,795 ^~~~~ 2023-06-07T22:49:39,799 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:39,799 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:39,800 ^~~~~~ 2023-06-07T22:49:39,801 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:39,801 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:39,802 ^~~~~~ 2023-06-07T22:49:39,803 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:39,803 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:39,804 ^~~~~~ 2023-06-07T22:49:39,806 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:39,806 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:39,806 ^~~~~~ 2023-06-07T22:49:39,814 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,815 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:39,815 ^~~~~~~~~~~ 2023-06-07T22:49:39,816 P7_PROFILE 2023-06-07T22:49:39,822 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,823 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:39,823 ^~~~~~~~~~~ 2023-06-07T22:49:39,824 P7_PROFILE 2023-06-07T22:49:39,829 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,830 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:39,831 ^~~~~~~~~~~ 2023-06-07T22:49:39,831 P7_PROFILE 2023-06-07T22:49:39,845 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,846 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:39,846 ^~~~~~~~~~~ 2023-06-07T22:49:39,847 P7_PROFILE 2023-06-07T22:49:39,855 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,856 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:39,857 ^~~~~~~~~~~ 2023-06-07T22:49:39,869 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,870 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:39,870 ^~~~~~~~~~~ 2023-06-07T22:49:39,871 P7_PROFILE 2023-06-07T22:49:39,875 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,876 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:39,876 ^~~~~~~~~~~ 2023-06-07T22:49:39,877 P7_PROFILE 2023-06-07T22:49:39,884 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,885 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,886 ^~~~~~~~~~~ 2023-06-07T22:49:39,886 P7_PROFILE 2023-06-07T22:49:39,894 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,895 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,895 ^~~~~~ 2023-06-07T22:49:39,896 P7_GMX 2023-06-07T22:49:39,900 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,901 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,902 ^~~~~~ 2023-06-07T22:49:39,903 P7_GMX 2023-06-07T22:49:39,907 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,908 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,908 ^~~~~~ 2023-06-07T22:49:39,909 P7_GMX 2023-06-07T22:49:39,913 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:39,914 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:39,915 ^~~~~~ 2023-06-07T22:49:39,915 P7_GMX 2023-06-07T22:49:39,923 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,924 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:39,925 ^~~~~~~~~~~ 2023-06-07T22:49:39,925 P7_PROFILE 2023-06-07T22:49:39,930 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,931 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:39,931 ^~~~~~~~~~~ 2023-06-07T22:49:39,932 P7_PROFILE 2023-06-07T22:49:39,937 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,937 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:39,938 ^~~~~~~~~~~ 2023-06-07T22:49:39,938 P7_PROFILE 2023-06-07T22:49:39,940 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,940 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:39,941 ^~~~~~~~~~~ 2023-06-07T22:49:39,942 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:39,943 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:39,944 ^~~~~~~~~~~ 2023-06-07T22:49:39,949 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,949 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:39,950 ^~~~~~~~~~~ 2023-06-07T22:49:39,950 P7_PROFILE 2023-06-07T22:49:39,955 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,956 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:39,956 ^~~~~~~~~~~ 2023-06-07T22:49:39,957 P7_PROFILE 2023-06-07T22:49:39,968 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:39,968 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:39,969 ^~~~~~~~~~~ 2023-06-07T22:49:39,970 P7_PROFILE 2023-06-07T22:49:40,005 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2023-06-07T22:49:40,006 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:40,006 #error "No vector implementation enabled" 2023-06-07T22:49:40,007 ^~~~~ 2023-06-07T22:49:40,008 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,008 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:40,009 ^~~~~~ 2023-06-07T22:49:40,010 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,010 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:40,011 ^~~~~~ 2023-06-07T22:49:40,012 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,013 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:40,014 ^~~~~~ 2023-06-07T22:49:40,014 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,015 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:40,016 ^~~~~~ 2023-06-07T22:49:40,016 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,017 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:40,018 ^~~~~~~~~~~ 2023-06-07T22:49:40,019 P7_PROFILE 2023-06-07T22:49:40,020 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,021 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:40,027 ^~~~~~~~~~~ 2023-06-07T22:49:40,028 P7_PROFILE 2023-06-07T22:49:40,042 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,043 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:40,044 ^~~~~~~~~~~ 2023-06-07T22:49:40,045 P7_PROFILE 2023-06-07T22:49:40,045 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,046 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:40,048 ^~~~~~~~~~~ 2023-06-07T22:49:40,049 P7_PROFILE 2023-06-07T22:49:40,050 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2023-06-07T22:49:40,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2023-06-07T22:49:40,051 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,052 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:40,053 ^~~~~~~~~~~ 2023-06-07T22:49:40,054 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,054 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:40,055 ^~~~~~~~~~~ 2023-06-07T22:49:40,056 P7_PROFILE 2023-06-07T22:49:40,056 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,057 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:40,058 ^~~~~~~~~~~ 2023-06-07T22:49:40,058 P7_PROFILE 2023-06-07T22:49:40,060 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,061 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,062 ^~~~~~~~~~~ 2023-06-07T22:49:40,062 P7_PROFILE 2023-06-07T22:49:40,063 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,063 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,064 ^~~~~~ 2023-06-07T22:49:40,064 P7_GMX 2023-06-07T22:49:40,065 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,065 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,066 ^~~~~~ 2023-06-07T22:49:40,066 P7_GMX 2023-06-07T22:49:40,067 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,068 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,068 ^~~~~~ 2023-06-07T22:49:40,069 P7_GMX 2023-06-07T22:49:40,069 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,070 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,071 ^~~~~~ 2023-06-07T22:49:40,072 P7_GMX 2023-06-07T22:49:40,073 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,073 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:40,074 ^~~~~~~~~~~ 2023-06-07T22:49:40,074 P7_PROFILE 2023-06-07T22:49:40,076 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,076 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:40,077 ^~~~~~~~~~~ 2023-06-07T22:49:40,078 P7_PROFILE 2023-06-07T22:49:40,079 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,080 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:40,080 ^~~~~~~~~~~ 2023-06-07T22:49:40,081 P7_PROFILE 2023-06-07T22:49:40,082 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,083 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:40,083 ^~~~~~~~~~~ 2023-06-07T22:49:40,084 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,085 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:40,086 ^~~~~~~~~~~ 2023-06-07T22:49:40,087 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,087 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:40,088 ^~~~~~~~~~~ 2023-06-07T22:49:40,088 P7_PROFILE 2023-06-07T22:49:40,089 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,090 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:40,090 ^~~~~~~~~~~ 2023-06-07T22:49:40,090 P7_PROFILE 2023-06-07T22:49:40,117 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,118 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:40,119 ^~~~~~~~~~~ 2023-06-07T22:49:40,119 P7_PROFILE 2023-06-07T22:49:40,147 In file included from vendor/hmmer/src/tracealign.c:15: 2023-06-07T22:49:40,147 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:40,148 #error "No vector implementation enabled" 2023-06-07T22:49:40,149 ^~~~~ 2023-06-07T22:49:40,150 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,150 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:40,151 ^~~~~~ 2023-06-07T22:49:40,152 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,152 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:40,152 ^~~~~~ 2023-06-07T22:49:40,153 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,154 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:40,155 ^~~~~~ 2023-06-07T22:49:40,155 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,156 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:40,157 ^~~~~~ 2023-06-07T22:49:40,157 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,160 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:40,161 ^~~~~~~~~~~ 2023-06-07T22:49:40,162 P7_PROFILE 2023-06-07T22:49:40,166 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,166 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:40,167 ^~~~~~~~~~~ 2023-06-07T22:49:40,167 P7_PROFILE 2023-06-07T22:49:40,168 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,168 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:40,169 ^~~~~~~~~~~ 2023-06-07T22:49:40,169 P7_PROFILE 2023-06-07T22:49:40,170 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,176 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:40,177 ^~~~~~~~~~~ 2023-06-07T22:49:40,202 P7_PROFILE 2023-06-07T22:49:40,202 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,203 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:40,204 ^~~~~~~~~~~ 2023-06-07T22:49:40,204 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2023-06-07T22:49:40,205 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2023-06-07T22:49:40,205 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,206 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:40,206 ^~~~~~~~~~~ 2023-06-07T22:49:40,207 P7_PROFILE 2023-06-07T22:49:40,207 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,208 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:40,208 ^~~~~~~~~~~ 2023-06-07T22:49:40,210 P7_PROFILE 2023-06-07T22:49:40,211 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,212 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,212 ^~~~~~~~~~~ 2023-06-07T22:49:40,212 P7_PROFILE 2023-06-07T22:49:40,213 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,213 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,214 ^~~~~~ 2023-06-07T22:49:40,214 P7_GMX 2023-06-07T22:49:40,215 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,215 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,216 ^~~~~~ 2023-06-07T22:49:40,216 P7_GMX 2023-06-07T22:49:40,219 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,220 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,221 ^~~~~~ 2023-06-07T22:49:40,221 P7_GMX 2023-06-07T22:49:40,225 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,226 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,226 ^~~~~~ 2023-06-07T22:49:40,227 P7_GMX 2023-06-07T22:49:40,228 In file included from vendor/hmmer/src/hmmer.c:18: 2023-06-07T22:49:40,228 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:40,229 #error "No vector implementation enabled" 2023-06-07T22:49:40,229 ^~~~~ 2023-06-07T22:49:40,235 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,235 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:40,236 ^~~~~~ 2023-06-07T22:49:40,236 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,237 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:40,237 ^~~~~~ 2023-06-07T22:49:40,238 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,239 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:40,239 ^~~~~~ 2023-06-07T22:49:40,240 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,240 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:40,241 ^~~~~~ 2023-06-07T22:49:40,242 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,243 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:40,243 ^~~~~~~~~~~ 2023-06-07T22:49:40,244 P7_PROFILE 2023-06-07T22:49:40,261 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,262 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:40,263 ^~~~~~~~~~~ 2023-06-07T22:49:40,263 P7_PROFILE 2023-06-07T22:49:40,264 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,265 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:40,266 ^~~~~~~~~~~ 2023-06-07T22:49:40,266 P7_PROFILE 2023-06-07T22:49:40,267 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,267 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:40,268 ^~~~~~~~~~~ 2023-06-07T22:49:40,268 P7_PROFILE 2023-06-07T22:49:40,269 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,270 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:40,271 ^~~~~~~~~~~ 2023-06-07T22:49:40,271 P7_PROFILE 2023-06-07T22:49:40,272 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,273 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:40,273 ^~~~~~~~~~~ 2023-06-07T22:49:40,274 P7_PROFILE 2023-06-07T22:49:40,275 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,275 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:40,276 ^~~~~~~~~~~ 2023-06-07T22:49:40,290 P7_PROFILE 2023-06-07T22:49:40,290 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,291 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:40,291 ^~~~~~~~~~~ 2023-06-07T22:49:40,292 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,293 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:40,294 ^~~~~~~~~~~ 2023-06-07T22:49:40,294 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,295 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:40,295 ^~~~~~~~~~~ 2023-06-07T22:49:40,296 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,297 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:40,297 ^~~~~~~~~~~ 2023-06-07T22:49:40,298 P7_PROFILE 2023-06-07T22:49:40,299 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,299 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:40,300 ^~~~~~~~~~~ 2023-06-07T22:49:40,301 P7_PROFILE 2023-06-07T22:49:40,311 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,312 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:40,313 ^~~~~~~~~~~ 2023-06-07T22:49:40,313 P7_PROFILE 2023-06-07T22:49:40,314 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,315 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,315 ^~~~~~~~~~~ 2023-06-07T22:49:40,316 P7_PROFILE 2023-06-07T22:49:40,316 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,316 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,317 ^~~~~~ 2023-06-07T22:49:40,317 P7_GMX 2023-06-07T22:49:40,318 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,318 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:40,319 ^~~~~~~~~~~ 2023-06-07T22:49:40,319 P7_PROFILE 2023-06-07T22:49:40,320 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,320 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,321 ^~~~~~ 2023-06-07T22:49:40,331 P7_GMX 2023-06-07T22:49:40,332 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,333 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,333 ^~~~~~ 2023-06-07T22:49:40,334 P7_GMX 2023-06-07T22:49:40,334 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,334 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,335 ^~~~~~ 2023-06-07T22:49:40,335 P7_GMX 2023-06-07T22:49:40,336 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,336 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:40,337 ^~~~~~~~~~~ 2023-06-07T22:49:40,337 P7_PROFILE 2023-06-07T22:49:40,337 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,338 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:40,338 ^~~~~~~~~~~ 2023-06-07T22:49:40,339 P7_PROFILE 2023-06-07T22:49:40,339 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,339 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:40,340 ^~~~~~~~~~~ 2023-06-07T22:49:40,340 P7_PROFILE 2023-06-07T22:49:40,341 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,346 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:40,346 ^~~~~~~~~~~ 2023-06-07T22:49:40,346 P7_PROFILE 2023-06-07T22:49:40,347 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,347 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:40,348 ^~~~~~~~~~~ 2023-06-07T22:49:40,348 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,349 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:40,349 ^~~~~~~~~~~ 2023-06-07T22:49:40,350 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,350 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:40,350 ^~~~~~~~~~~ 2023-06-07T22:49:40,351 P7_PROFILE 2023-06-07T22:49:40,351 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,352 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:40,352 ^~~~~~~~~~~ 2023-06-07T22:49:40,353 P7_PROFILE 2023-06-07T22:49:40,353 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,353 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:40,354 ^~~~~~~~~~~ 2023-06-07T22:49:40,354 P7_PROFILE 2023-06-07T22:49:40,355 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2023-06-07T22:49:40,355 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,356 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2023-06-07T22:49:40,356 ^~~~~~ 2023-06-07T22:49:40,357 P7_GMX 2023-06-07T22:49:40,357 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,357 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2023-06-07T22:49:40,358 ^~~~~~ 2023-06-07T22:49:40,358 P7_GMX 2023-06-07T22:49:40,359 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,359 P7_OPROFILE *om = NULL; 2023-06-07T22:49:40,359 ^~~~~~~~~~~ 2023-06-07T22:49:40,360 P7_PROFILE 2023-06-07T22:49:40,360 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2023-06-07T22:49:40,361 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2023-06-07T22:49:40,382 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,382 om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-06-07T22:49:40,383 ^~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,383 p7_profile_Create 2023-06-07T22:49:40,384 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-06-07T22:49:40,384 om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-06-07T22:49:40,385 ^ 2023-06-07T22:49:40,385 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,385 p7_oprofile_Convert(gm, om); 2023-06-07T22:49:40,386 ^~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,386 p7_profile_Compare 2023-06-07T22:49:40,387 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,387 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-06-07T22:49:40,388 ^~~~~~~~~~~~~ 2023-06-07T22:49:40,388 p7_gmx_Create 2023-06-07T22:49:40,389 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-06-07T22:49:40,389 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-06-07T22:49:40,389 ^ 2023-06-07T22:49:40,390 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-06-07T22:49:40,390 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-06-07T22:49:40,391 ^ 2023-06-07T22:49:40,397 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,398 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2023-06-07T22:49:40,398 ^~~~~~~~~~~~~ 2023-06-07T22:49:40,398 p7_gmx_GrowTo 2023-06-07T22:49:40,399 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,400 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2023-06-07T22:49:40,400 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,401 p7_ReconfigLength 2023-06-07T22:49:40,411 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,413 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2023-06-07T22:49:40,414 ^~~~~~~~~~ 2023-06-07T22:49:40,414 p7_GForward 2023-06-07T22:49:40,415 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,415 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2023-06-07T22:49:40,416 ^~~~~~~~~~~ 2023-06-07T22:49:40,416 p7_GBackward 2023-06-07T22:49:40,431 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,432 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2023-06-07T22:49:40,432 ^~~~~~~~~~~ 2023-06-07T22:49:40,433 p7_GDecoding 2023-06-07T22:49:40,433 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,434 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2023-06-07T22:49:40,434 ^~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,434 p7_GOptimalAccuracy 2023-06-07T22:49:40,435 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,435 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2023-06-07T22:49:40,436 ^~~~~~~~~~ 2023-06-07T22:49:40,436 p7_GOATrace 2023-06-07T22:49:40,436 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,437 p7_omx_Reuse(oxf); 2023-06-07T22:49:40,437 ^~~~~~~~~~~~ 2023-06-07T22:49:40,438 p7_gmx_Reuse 2023-06-07T22:49:40,442 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,442 p7_omx_Destroy(oxf); 2023-06-07T22:49:40,443 ^~~~~~~~~~~~~~ 2023-06-07T22:49:40,443 p7_gmx_Destroy 2023-06-07T22:49:40,448 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-06-07T22:49:40,449 p7_oprofile_Destroy(om); 2023-06-07T22:49:40,449 ^~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,449 p7_profile_Destroy 2023-06-07T22:49:40,563 In file included from vendor/hmmer/src/p7_domain.c:16: 2023-06-07T22:49:40,564 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:40,564 #error "No vector implementation enabled" 2023-06-07T22:49:40,564 ^~~~~ 2023-06-07T22:49:40,566 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,566 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:40,567 ^~~~~~ 2023-06-07T22:49:40,567 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,568 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:40,568 ^~~~~~ 2023-06-07T22:49:40,569 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,569 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:40,570 ^~~~~~ 2023-06-07T22:49:40,571 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,572 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:40,572 ^~~~~~ 2023-06-07T22:49:40,573 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,574 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:40,574 ^~~~~~~~~~~ 2023-06-07T22:49:40,575 P7_PROFILE 2023-06-07T22:49:40,581 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,581 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:40,582 ^~~~~~~~~~~ 2023-06-07T22:49:40,582 P7_PROFILE 2023-06-07T22:49:40,583 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,583 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:40,584 ^~~~~~~~~~~ 2023-06-07T22:49:40,584 P7_PROFILE 2023-06-07T22:49:40,585 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,585 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:40,586 ^~~~~~~~~~~ 2023-06-07T22:49:40,586 P7_PROFILE 2023-06-07T22:49:40,587 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2023-06-07T22:49:40,588 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,588 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:40,589 ^~~~~~~~~~~ 2023-06-07T22:49:40,589 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2023-06-07T22:49:40,593 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,594 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:40,594 ^~~~~~~~~~~ 2023-06-07T22:49:40,595 P7_PROFILE 2023-06-07T22:49:40,596 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,597 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:40,598 ^~~~~~~~~~~ 2023-06-07T22:49:40,599 P7_PROFILE 2023-06-07T22:49:40,601 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,602 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,602 ^~~~~~~~~~~ 2023-06-07T22:49:40,603 P7_PROFILE 2023-06-07T22:49:40,606 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,607 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,607 ^~~~~~ 2023-06-07T22:49:40,608 P7_GMX 2023-06-07T22:49:40,609 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,610 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,610 ^~~~~~ 2023-06-07T22:49:40,611 P7_GMX 2023-06-07T22:49:40,612 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,613 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,613 ^~~~~~ 2023-06-07T22:49:40,614 P7_GMX 2023-06-07T22:49:40,620 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:40,621 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:40,622 ^~~~~~ 2023-06-07T22:49:40,623 P7_GMX 2023-06-07T22:49:40,623 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,624 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:40,625 ^~~~~~~~~~~ 2023-06-07T22:49:40,625 P7_PROFILE 2023-06-07T22:49:40,626 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,627 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:40,627 ^~~~~~~~~~~ 2023-06-07T22:49:40,628 P7_PROFILE 2023-06-07T22:49:40,635 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,636 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:40,636 ^~~~~~~~~~~ 2023-06-07T22:49:40,637 P7_PROFILE 2023-06-07T22:49:40,637 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,638 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:40,638 ^~~~~~~~~~~ 2023-06-07T22:49:40,639 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,640 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:40,640 ^~~~~~~~~~~ 2023-06-07T22:49:40,641 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,649 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:40,650 ^~~~~~~~~~~ 2023-06-07T22:49:40,650 P7_PROFILE 2023-06-07T22:49:40,651 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,652 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:40,653 ^~~~~~~~~~~ 2023-06-07T22:49:40,653 P7_PROFILE 2023-06-07T22:49:40,654 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,654 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:40,654 ^~~~~~~~~~~ 2023-06-07T22:49:40,655 P7_PROFILE 2023-06-07T22:49:40,655 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2023-06-07T22:49:40,656 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,656 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2023-06-07T22:49:40,657 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,658 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,658 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2023-06-07T22:49:40,658 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,659 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,659 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2023-06-07T22:49:40,660 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,660 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,661 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2023-06-07T22:49:40,673 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,678 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,678 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2023-06-07T22:49:40,679 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,680 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,680 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-06-07T22:49:40,681 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,682 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:40,682 if (ser_size != ptr - (*buf + *n)){ 2023-06-07T22:49:40,683 ^~ 2023-06-07T22:49:40,683 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2023-06-07T22:49:40,690 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,692 ret_obj->envsc = *((float *) &host_32bit); 2023-06-07T22:49:40,693 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,693 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,694 ret_obj->domcorrection = *((float *) &host_32bit); 2023-06-07T22:49:40,694 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,695 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,695 ret_obj->dombias = *((float *) &host_32bit); 2023-06-07T22:49:40,696 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,696 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,698 ret_obj->oasc = *((float *) &host_32bit); 2023-06-07T22:49:40,703 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,703 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,704 ret_obj->bitscore = *((float *) &host_32bit); 2023-06-07T22:49:40,712 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,712 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,713 ret_obj->lnP = *((double *) &host_64bit); 2023-06-07T22:49:40,713 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,714 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-06-07T22:49:40,714 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2023-06-07T22:49:40,715 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:40,715 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:40,716 if(ptr - (buf + *n) != obj_size){ 2023-06-07T22:49:40,716 ^~ 2023-06-07T22:49:40,716 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2023-06-07T22:49:40,717 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2023-06-07T22:49:40,938 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2023-06-07T22:49:40,939 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:40,939 #error "No vector implementation enabled" 2023-06-07T22:49:40,940 ^~~~~ 2023-06-07T22:49:40,943 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,944 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:40,944 ^~~~~~ 2023-06-07T22:49:40,945 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,946 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:40,946 ^~~~~~ 2023-06-07T22:49:40,947 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,947 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:40,948 ^~~~~~ 2023-06-07T22:49:40,949 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,949 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:40,950 ^~~~~~ 2023-06-07T22:49:40,957 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,957 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:40,958 ^~~~~~~~~~~ 2023-06-07T22:49:40,958 P7_PROFILE 2023-06-07T22:49:40,962 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,963 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:40,963 ^~~~~~~~~~~ 2023-06-07T22:49:40,964 P7_PROFILE 2023-06-07T22:49:40,967 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,968 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:40,968 ^~~~~~~~~~~ 2023-06-07T22:49:40,969 P7_PROFILE 2023-06-07T22:49:40,973 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:40,973 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:40,974 ^~~~~~~~~~~ 2023-06-07T22:49:40,974 P7_PROFILE 2023-06-07T22:49:40,979 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:40,979 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:40,980 ^~~~~~~~~~~ 2023-06-07T22:49:40,996 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2023-06-07T22:49:40,997 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:40,997 #error "No vector implementation enabled" 2023-06-07T22:49:40,997 ^~~~~ 2023-06-07T22:49:40,999 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:40,999 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:41,000 ^~~~~~ 2023-06-07T22:49:41,000 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,001 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:41,001 ^~~~~~ 2023-06-07T22:49:41,002 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,003 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:41,003 ^~~~~~ 2023-06-07T22:49:41,004 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,004 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:41,005 ^~~~~~ 2023-06-07T22:49:41,005 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,006 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:41,007 ^~~~~~~~~~~ 2023-06-07T22:49:41,007 P7_PROFILE 2023-06-07T22:49:41,021 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,022 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:41,023 ^~~~~~~~~~~ 2023-06-07T22:49:41,032 P7_PROFILE 2023-06-07T22:49:41,033 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,033 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:41,034 ^~~~~~~~~~~ 2023-06-07T22:49:41,034 P7_PROFILE 2023-06-07T22:49:41,035 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,036 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:41,037 ^~~~~~~~~~~ 2023-06-07T22:49:41,037 P7_PROFILE 2023-06-07T22:49:41,038 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,038 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:41,039 ^~~~~~~~~~~ 2023-06-07T22:49:41,040 P7_PROFILE 2023-06-07T22:49:41,040 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,041 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:41,052 ^~~~~~~~~~~ 2023-06-07T22:49:41,052 P7_PROFILE 2023-06-07T22:49:41,053 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,054 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,054 ^~~~~~~~~~~ 2023-06-07T22:49:41,055 P7_PROFILE 2023-06-07T22:49:41,055 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,056 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,057 ^~~~~~ 2023-06-07T22:49:41,057 P7_GMX 2023-06-07T22:49:41,058 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,059 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:41,059 ^~~~~~~~~~~ 2023-06-07T22:49:41,060 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,060 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:41,061 ^~~~~~~~~~~ 2023-06-07T22:49:41,061 P7_PROFILE 2023-06-07T22:49:41,072 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,072 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:41,073 ^~~~~~~~~~~ 2023-06-07T22:49:41,074 P7_PROFILE 2023-06-07T22:49:41,074 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,075 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,075 ^~~~~~~~~~~ 2023-06-07T22:49:41,076 P7_PROFILE 2023-06-07T22:49:41,077 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,077 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,078 ^~~~~~ 2023-06-07T22:49:41,079 P7_GMX 2023-06-07T22:49:41,079 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,080 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,080 ^~~~~~ 2023-06-07T22:49:41,081 P7_GMX 2023-06-07T22:49:41,092 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,093 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,094 ^~~~~~ 2023-06-07T22:49:41,094 P7_GMX 2023-06-07T22:49:41,095 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,095 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,096 ^~~~~~ 2023-06-07T22:49:41,096 P7_GMX 2023-06-07T22:49:41,097 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,098 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,098 ^~~~~~ 2023-06-07T22:49:41,099 P7_GMX 2023-06-07T22:49:41,099 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,100 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,100 ^~~~~~ 2023-06-07T22:49:41,111 P7_GMX 2023-06-07T22:49:41,112 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,113 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,113 ^~~~~~ 2023-06-07T22:49:41,114 P7_GMX 2023-06-07T22:49:41,114 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,115 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:41,115 ^~~~~~~~~~~ 2023-06-07T22:49:41,116 P7_PROFILE 2023-06-07T22:49:41,116 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,116 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:41,117 ^~~~~~~~~~~ 2023-06-07T22:49:41,117 P7_PROFILE 2023-06-07T22:49:41,118 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,118 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:41,119 ^~~~~~~~~~~ 2023-06-07T22:49:41,119 P7_PROFILE 2023-06-07T22:49:41,120 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,121 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:41,132 ^~~~~~~~~~~ 2023-06-07T22:49:41,132 P7_PROFILE 2023-06-07T22:49:41,133 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,133 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:41,134 ^~~~~~~~~~~ 2023-06-07T22:49:41,134 P7_PROFILE 2023-06-07T22:49:41,135 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,136 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:41,136 ^~~~~~~~~~~ 2023-06-07T22:49:41,137 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,137 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:41,138 ^~~~~~~~~~~ 2023-06-07T22:49:41,139 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,140 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:41,140 ^~~~~~~~~~~ 2023-06-07T22:49:41,141 P7_PROFILE 2023-06-07T22:49:41,151 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,152 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:41,153 ^~~~~~~~~~~ 2023-06-07T22:49:41,153 P7_PROFILE 2023-06-07T22:49:41,154 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,155 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:41,156 ^~~~~~~~~~~ 2023-06-07T22:49:41,157 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,157 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:41,158 ^~~~~~~~~~~ 2023-06-07T22:49:41,171 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,172 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:41,173 ^~~~~~~~~~~ 2023-06-07T22:49:41,174 P7_PROFILE 2023-06-07T22:49:41,174 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,175 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:41,176 ^~~~~~~~~~~ 2023-06-07T22:49:41,177 P7_PROFILE 2023-06-07T22:49:41,178 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,178 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:41,179 ^~~~~~~~~~~ 2023-06-07T22:49:41,180 P7_PROFILE 2023-06-07T22:49:41,181 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,181 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:41,182 ^~~~~~~~~~~ 2023-06-07T22:49:41,182 P7_PROFILE 2023-06-07T22:49:41,183 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,183 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:41,184 ^~~~~~~~~~~ 2023-06-07T22:49:41,184 P7_PROFILE 2023-06-07T22:49:41,185 In file included from vendor/hmmer/src/p7_prior.c:11: 2023-06-07T22:49:41,186 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:41,186 #error "No vector implementation enabled" 2023-06-07T22:49:41,187 ^~~~~ 2023-06-07T22:49:41,187 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,188 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:41,189 ^~~~~~ 2023-06-07T22:49:41,190 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,191 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:41,229 ^~~~~~ 2023-06-07T22:49:41,229 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,230 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:41,231 ^~~~~~ 2023-06-07T22:49:41,231 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,232 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:41,232 ^~~~~~ 2023-06-07T22:49:41,233 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,234 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:41,235 ^~~~~~~~~~~ 2023-06-07T22:49:41,235 P7_PROFILE 2023-06-07T22:49:41,236 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,236 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:41,237 ^~~~~~~~~~~ 2023-06-07T22:49:41,252 P7_PROFILE 2023-06-07T22:49:41,252 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2023-06-07T22:49:41,253 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,254 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2023-06-07T22:49:41,254 ^~~~~~~~~~~ 2023-06-07T22:49:41,255 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,255 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:41,256 ^~~~~~~~~~~ 2023-06-07T22:49:41,256 P7_PROFILE 2023-06-07T22:49:41,257 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2023-06-07T22:49:41,258 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,258 P7_OPROFILE *om = NULL; /* target profile */ 2023-06-07T22:49:41,259 ^~~~~~~~~~~ 2023-06-07T22:49:41,259 P7_PROFILE 2023-06-07T22:49:41,260 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,260 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:41,261 ^~~~~~~~~~~ 2023-06-07T22:49:41,261 P7_PROFILE 2023-06-07T22:49:41,262 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,263 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:41,263 ^~~~~~~~~~~ 2023-06-07T22:49:41,264 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,264 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:41,265 ^~~~~~~~~~~ 2023-06-07T22:49:41,265 P7_PROFILE 2023-06-07T22:49:41,265 In file included from vendor/hmmer/src/p7_trace.c:22: 2023-06-07T22:49:41,266 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:41,266 #error "No vector implementation enabled" 2023-06-07T22:49:41,267 ^~~~~ 2023-06-07T22:49:41,267 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2023-06-07T22:49:41,268 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,268 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-06-07T22:49:41,269 ^~~~~~~~~~~ 2023-06-07T22:49:41,269 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-06-07T22:49:41,270 if ( size <= 0 ) { \ 2023-06-07T22:49:41,270 ^~~~ 2023-06-07T22:49:41,271 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2023-06-07T22:49:41,290 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-06-07T22:49:41,290 ^~~~~~~~~~~ 2023-06-07T22:49:41,291 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-06-07T22:49:41,291 if ( size <= 0 ) { \ 2023-06-07T22:49:41,292 ^~~~ 2023-06-07T22:49:41,292 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-06-07T22:49:41,293 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-06-07T22:49:41,293 ^ 2023-06-07T22:49:41,294 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-06-07T22:49:41,294 if ( size <= 0 ) { \ 2023-06-07T22:49:41,295 ^~~~ 2023-06-07T22:49:41,295 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,296 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:41,298 ^~~~~~~~~~~ 2023-06-07T22:49:41,299 P7_PROFILE 2023-06-07T22:49:41,299 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-06-07T22:49:41,300 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-06-07T22:49:41,300 ^ 2023-06-07T22:49:41,301 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2023-06-07T22:49:41,301 if ( ((p) = malloc(size)) == NULL) { \ 2023-06-07T22:49:41,301 ^~~~ 2023-06-07T22:49:41,302 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,302 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:41,303 ^~~~~~ 2023-06-07T22:49:41,303 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-06-07T22:49:41,303 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-06-07T22:49:41,304 ^ 2023-06-07T22:49:41,304 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2023-06-07T22:49:41,304 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2023-06-07T22:49:41,305 ^~~~ 2023-06-07T22:49:41,305 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,306 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:41,307 ^~~~~~ 2023-06-07T22:49:41,307 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,307 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:41,308 ^~~~~~ 2023-06-07T22:49:41,308 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,308 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:41,309 ^~~~~~ 2023-06-07T22:49:41,309 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,310 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,310 ^~~~~~~~~~~ 2023-06-07T22:49:41,311 P7_PROFILE 2023-06-07T22:49:41,311 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,312 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,312 ^~~~~~ 2023-06-07T22:49:41,313 P7_GMX 2023-06-07T22:49:41,313 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,313 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:41,314 ^~~~~~~~~~~ 2023-06-07T22:49:41,314 P7_PROFILE 2023-06-07T22:49:41,315 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-06-07T22:49:41,315 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2023-06-07T22:49:41,315 ^~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:41,316 p7_profile_Reuse 2023-06-07T22:49:41,316 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,317 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:41,317 ^~~~~~~~~~~ 2023-06-07T22:49:41,317 P7_PROFILE 2023-06-07T22:49:41,318 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,318 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,318 ^~~~~~ 2023-06-07T22:49:41,319 P7_GMX 2023-06-07T22:49:41,319 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,319 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:41,320 ^~~~~~~~~~~ 2023-06-07T22:49:41,320 P7_PROFILE 2023-06-07T22:49:41,321 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,321 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,321 ^~~~~~ 2023-06-07T22:49:41,322 P7_GMX 2023-06-07T22:49:41,322 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,323 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:41,323 ^~~~~~~~~~~ 2023-06-07T22:49:41,323 P7_PROFILE 2023-06-07T22:49:41,324 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,324 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,325 ^~~~~~ 2023-06-07T22:49:41,325 P7_GMX 2023-06-07T22:49:41,326 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-06-07T22:49:41,326 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2023-06-07T22:49:41,326 ^~~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:41,327 p7_profile_Reuse 2023-06-07T22:49:41,327 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,328 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:41,328 ^~~~~~~~~~~ 2023-06-07T22:49:41,329 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,329 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:41,330 ^~~~~~~~~~~ 2023-06-07T22:49:41,330 P7_PROFILE 2023-06-07T22:49:41,330 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,331 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:41,331 ^~~~~~~~~~~ 2023-06-07T22:49:41,332 P7_PROFILE 2023-06-07T22:49:41,332 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,333 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:41,333 ^~~~~~~~~~~ 2023-06-07T22:49:41,333 P7_PROFILE 2023-06-07T22:49:41,334 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,334 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:41,335 ^~~~~~~~~~~ 2023-06-07T22:49:41,335 P7_PROFILE 2023-06-07T22:49:41,336 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,336 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:41,337 ^~~~~~~~~~~ 2023-06-07T22:49:41,337 P7_PROFILE 2023-06-07T22:49:41,338 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,338 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:41,339 ^~~~~~~~~~~ 2023-06-07T22:49:41,339 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,340 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:41,340 ^~~~~~~~~~~ 2023-06-07T22:49:41,341 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-06-07T22:49:41,341 if (om) p7_oprofile_Destroy(om); 2023-06-07T22:49:41,342 ^~~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:41,342 p7_profile_Destroy 2023-06-07T22:49:41,343 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,343 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,343 ^~~~~~~~~~~ 2023-06-07T22:49:41,344 P7_PROFILE 2023-06-07T22:49:41,344 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2023-06-07T22:49:41,345 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2023-06-07T22:49:41,345 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,346 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,346 ^~~~~~ 2023-06-07T22:49:41,347 P7_GMX 2023-06-07T22:49:41,347 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,347 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-06-07T22:49:41,348 ^~~~~~~~~~~ 2023-06-07T22:49:41,348 P7_PROFILE 2023-06-07T22:49:41,349 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2023-06-07T22:49:41,349 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-06-07T22:49:41,350 ^ 2023-06-07T22:49:41,350 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,351 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:41,352 ^~~~~~~~~~~ 2023-06-07T22:49:41,352 P7_PROFILE 2023-06-07T22:49:41,352 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,353 for (i = 0; i < cache->n; i++) 2023-06-07T22:49:41,353 ^ 2023-06-07T22:49:41,354 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2023-06-07T22:49:41,354 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,355 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,355 ^~~~~~ 2023-06-07T22:49:41,356 P7_GMX 2023-06-07T22:49:41,356 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2023-06-07T22:49:41,357 n += p7_oprofile_Sizeof(cache->list[i]); 2023-06-07T22:49:41,358 ^~~~~~~~~~~~~~~~~~ 2023-06-07T22:49:41,358 p7_profile_Sizeof 2023-06-07T22:49:41,358 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,359 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:41,359 ^~~~~~~~~~~ 2023-06-07T22:49:41,360 P7_PROFILE 2023-06-07T22:49:41,360 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,360 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,361 ^~~~~~ 2023-06-07T22:49:41,361 P7_GMX 2023-06-07T22:49:41,362 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2023-06-07T22:49:41,362 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,363 P7_OPROFILE *om; 2023-06-07T22:49:41,363 ^~~~~~~~~~~ 2023-06-07T22:49:41,363 P7_PROFILE 2023-06-07T22:49:41,364 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,364 for (i = 0; i < cache->n; i++) 2023-06-07T22:49:41,365 ^ 2023-06-07T22:49:41,365 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2023-06-07T22:49:41,366 if (om->name) free(om->name); 2023-06-07T22:49:41,366 ^~ 2023-06-07T22:49:41,367 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2023-06-07T22:49:41,367 if (om->name) free(om->name); 2023-06-07T22:49:41,368 ^~ 2023-06-07T22:49:41,368 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2023-06-07T22:49:41,368 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2023-06-07T22:49:41,369 ^~ 2023-06-07T22:49:41,369 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,370 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,370 ^~~~~~ 2023-06-07T22:49:41,371 P7_GMX 2023-06-07T22:49:41,372 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2023-06-07T22:49:41,373 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,374 for (i = 0; i < cache->n; i++) 2023-06-07T22:49:41,374 ^ 2023-06-07T22:49:41,375 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,375 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:41,376 ^~~~~~~~~~~ 2023-06-07T22:49:41,376 P7_PROFILE 2023-06-07T22:49:41,377 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,377 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:41,378 ^~~~~~~~~~~ 2023-06-07T22:49:41,378 P7_PROFILE 2023-06-07T22:49:41,379 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,379 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:41,380 ^~~~~~~~~~~ 2023-06-07T22:49:41,380 P7_PROFILE 2023-06-07T22:49:41,381 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,382 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:41,382 ^~~~~~~~~~~ 2023-06-07T22:49:41,382 P7_PROFILE 2023-06-07T22:49:41,383 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,383 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:41,384 ^~~~~~~~~~~ 2023-06-07T22:49:41,384 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,385 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:41,385 ^~~~~~~~~~~ 2023-06-07T22:49:41,385 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,386 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:41,386 ^~~~~~~~~~~ 2023-06-07T22:49:41,387 P7_PROFILE 2023-06-07T22:49:41,387 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,388 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:41,388 ^~~~~~~~~~~ 2023-06-07T22:49:41,389 P7_PROFILE 2023-06-07T22:49:41,389 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,390 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:41,390 ^~~~~~~~~~~ 2023-06-07T22:49:41,391 P7_PROFILE 2023-06-07T22:49:41,625 In file included from vendor/hmmer/src/fm_general.c:14: 2023-06-07T22:49:41,625 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-06-07T22:49:41,626 #error "No vector implementation enabled" 2023-06-07T22:49:41,626 ^~~~~ 2023-06-07T22:49:41,627 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,628 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-06-07T22:49:41,628 ^~~~~~ 2023-06-07T22:49:41,628 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,629 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-06-07T22:49:41,629 ^~~~~~ 2023-06-07T22:49:41,630 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,630 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-06-07T22:49:41,631 ^~~~~~ 2023-06-07T22:49:41,631 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-06-07T22:49:41,632 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-06-07T22:49:41,632 ^~~~~~ 2023-06-07T22:49:41,633 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,634 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-06-07T22:49:41,635 ^~~~~~~~~~~ 2023-06-07T22:49:41,635 P7_PROFILE 2023-06-07T22:49:41,636 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,637 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-06-07T22:49:41,638 ^~~~~~~~~~~ 2023-06-07T22:49:41,638 P7_PROFILE 2023-06-07T22:49:41,639 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,640 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-06-07T22:49:41,641 ^~~~~~~~~~~ 2023-06-07T22:49:41,641 P7_PROFILE 2023-06-07T22:49:41,642 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,643 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-06-07T22:49:41,643 ^~~~~~~~~~~ 2023-06-07T22:49:41,643 P7_PROFILE 2023-06-07T22:49:41,646 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,646 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-06-07T22:49:41,647 ^~~~~~~~~~~ 2023-06-07T22:49:41,651 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,652 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-06-07T22:49:41,652 ^~~~~~~~~~~ 2023-06-07T22:49:41,653 P7_PROFILE 2023-06-07T22:49:41,654 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,655 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-06-07T22:49:41,655 ^~~~~~~~~~~ 2023-06-07T22:49:41,656 P7_PROFILE 2023-06-07T22:49:41,658 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,659 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,660 ^~~~~~~~~~~ 2023-06-07T22:49:41,660 P7_PROFILE 2023-06-07T22:49:41,661 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,662 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,662 ^~~~~~ 2023-06-07T22:49:41,663 P7_GMX 2023-06-07T22:49:41,664 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,665 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,665 ^~~~~~ 2023-06-07T22:49:41,666 P7_GMX 2023-06-07T22:49:41,667 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,668 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,668 ^~~~~~ 2023-06-07T22:49:41,669 P7_GMX 2023-06-07T22:49:41,670 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-06-07T22:49:41,671 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-06-07T22:49:41,671 ^~~~~~ 2023-06-07T22:49:41,671 P7_GMX 2023-06-07T22:49:41,676 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,676 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-06-07T22:49:41,677 ^~~~~~~~~~~ 2023-06-07T22:49:41,677 P7_PROFILE 2023-06-07T22:49:41,679 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,679 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-06-07T22:49:41,680 ^~~~~~~~~~~ 2023-06-07T22:49:41,680 P7_PROFILE 2023-06-07T22:49:41,682 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,683 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-06-07T22:49:41,683 ^~~~~~~~~~~ 2023-06-07T22:49:41,684 P7_PROFILE 2023-06-07T22:49:41,685 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,685 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-06-07T22:49:41,686 ^~~~~~~~~~~ 2023-06-07T22:49:41,686 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-06-07T22:49:41,687 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-06-07T22:49:41,687 ^~~~~~~~~~~ 2023-06-07T22:49:41,688 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,688 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-06-07T22:49:41,689 ^~~~~~~~~~~ 2023-06-07T22:49:41,689 P7_PROFILE 2023-06-07T22:49:41,690 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,690 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-06-07T22:49:41,691 ^~~~~~~~~~~ 2023-06-07T22:49:41,691 P7_PROFILE 2023-06-07T22:49:41,697 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-06-07T22:49:41,697 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-06-07T22:49:41,698 ^~~~~~~~~~~ 2023-06-07T22:49:41,698 P7_PROFILE 2023-06-07T22:49:41,708 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2023-06-07T22:49:41,708 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,709 if (ranges[lo].lower > end) return -1; 2023-06-07T22:49:41,709 ^ 2023-06-07T22:49:41,709 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,710 if (ranges[hi].upper < start) return -1; 2023-06-07T22:49:41,710 ^ 2023-06-07T22:49:41,711 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,711 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2023-06-07T22:49:41,712 ^ 2023-06-07T22:49:41,712 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,712 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-06-07T22:49:41,713 ^~ 2023-06-07T22:49:41,713 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,714 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-06-07T22:49:41,714 ^~ 2023-06-07T22:49:41,714 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,715 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-06-07T22:49:41,715 ^~ 2023-06-07T22:49:41,715 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,716 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-06-07T22:49:41,716 ^~ 2023-06-07T22:49:41,717 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2023-06-07T22:49:41,717 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-06-07T22:49:41,718 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-06-07T22:49:41,718 ^~ 2023-06-07T22:49:41,718 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,719 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-06-07T22:49:41,719 ^~ 2023-06-07T22:49:41,720 In file included from vendor/hmmer/src/fm_general.c:12: 2023-06-07T22:49:41,720 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:41,720 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-06-07T22:49:41,721 ^ 2023-06-07T22:49:41,721 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-06-07T22:49:41,722 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-06-07T22:49:41,722 ^~~~~~~ 2023-06-07T22:49:41,723 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-06-07T22:49:41,723 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-06-07T22:49:41,723 ^~~ 2023-06-07T22:49:41,724 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-06-07T22:49:41,724 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-06-07T22:49:41,725 ^~~~~~~ 2023-06-07T22:49:41,725 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:41,726 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-06-07T22:49:41,726 ^ 2023-06-07T22:49:41,727 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-06-07T22:49:41,727 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-06-07T22:49:41,728 ^~~~~~~ 2023-06-07T22:49:41,728 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-06-07T22:49:41,729 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-06-07T22:49:41,729 ^~~ 2023-06-07T22:49:41,729 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-06-07T22:49:41,730 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-06-07T22:49:41,730 ^~~~~~~ 2023-06-07T22:49:41,731 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:41,731 for (j= start; j<=end; j++) 2023-06-07T22:49:41,731 ^~ 2023-06-07T22:49:41,732 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2023-06-07T22:49:41,732 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-06-07T22:49:41,733 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-06-07T22:49:41,733 ^~ 2023-06-07T22:49:41,734 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-06-07T22:49:41,734 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-06-07T22:49:41,734 ^~ 2023-06-07T22:49:41,735 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2023-06-07T22:49:41,736 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,736 for (i=0; iseq_count; i++) { 2023-06-07T22:49:41,737 ^ 2023-06-07T22:49:41,741 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:41,742 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2023-06-07T22:49:41,742 ^~ 2023-06-07T22:49:41,743 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:41,743 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2023-06-07T22:49:41,743 ^~ 2023-06-07T22:49:41,744 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:41,744 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2023-06-07T22:49:41,745 ^~ 2023-06-07T22:49:41,745 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-06-07T22:49:41,745 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2023-06-07T22:49:41,746 ^~ 2023-06-07T22:49:41,746 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,747 for (i=0; iambig_list->count; i++) { 2023-06-07T22:49:41,747 ^ 2023-06-07T22:49:41,747 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,748 for (i=0; iseq_count; i++) 2023-06-07T22:49:41,748 ^ 2023-06-07T22:49:41,749 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2023-06-07T22:49:41,750 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-07T22:49:41,750 for (i=0; iseq_count; i++) { 2023-06-07T22:49:41,750 ^ 2023-06-07T22:49:41,814 checking whether can be included... yes 2023-06-07T22:49:41,815 checking whether can be included... yes 2023-06-07T22:49:41,815 checking whether can be included... yes 2023-06-07T22:49:41,816 checking whether can be included... yes 2023-06-07T22:49:41,816 checking whether can be included... yes 2023-06-07T22:49:41,817 checking whether can be included... yes 2023-06-07T22:49:41,817 checking whether can be included... yes 2023-06-07T22:49:41,817 checking whether can be included... yes 2023-06-07T22:49:41,818 checking whether can be included... yes 2023-06-07T22:49:41,818 checking whether can be included... yes 2023-06-07T22:49:41,818 checking whether can be included... yes 2023-06-07T22:49:41,819 checking whether can be included... yes 2023-06-07T22:49:41,819 checking whether can be included... yes 2023-06-07T22:49:41,820 checking whether function 'aligned_alloc' is available... yes 2023-06-07T22:49:41,820 checking whether function 'erfc' is available... yes 2023-06-07T22:49:41,820 checking whether function 'getpid' is available... yes 2023-06-07T22:49:41,821 checking whether function '_mm_malloc' is available... no 2023-06-07T22:49:41,821 checking whether function 'popen' is available... yes 2023-06-07T22:49:41,822 checking whether function 'posix_memalign' is available... yes 2023-06-07T22:49:41,822 checking whether function 'strcasecmp' is available... yes 2023-06-07T22:49:41,822 checking whether function 'strsep' is available... yes 2023-06-07T22:49:41,823 checking whether function 'sysconf' is available... yes 2023-06-07T22:49:41,823 checking whether function 'sysctl' is available... yes 2023-06-07T22:49:41,823 checking whether function 'times' is available... yes 2023-06-07T22:49:41,824 checking whether function 'fseeko' is available... yes 2023-06-07T22:49:41,824 checking whether can be included... yes 2023-06-07T22:49:41,824 checking whether can be included... yes 2023-06-07T22:49:41,825 checking whether can be included... yes 2023-06-07T22:49:41,825 checking whether can be included... yes 2023-06-07T22:49:41,825 checking whether can be included... yes 2023-06-07T22:49:41,826 checking whether can be included... yes 2023-06-07T22:49:41,826 checking whether can be included... yes 2023-06-07T22:49:41,827 checking whether can be included... yes 2023-06-07T22:49:41,827 checking whether function 'mkstemp' is available... yes 2023-06-07T22:49:41,828 checking whether function 'popen' is available... yes 2023-06-07T22:49:41,828 checking whether function 'putenv' is available... yes 2023-06-07T22:49:41,829 checking whether function 'strcasecmp' is available... yes 2023-06-07T22:49:41,829 checking whether function 'strsep' is available... yes 2023-06-07T22:49:41,830 checking whether function 'times' is available... yes 2023-06-07T22:49:41,831 checking whether function 'getpid' is available... yes 2023-06-07T22:49:41,831 checking whether function 'sysctl' is available... yes 2023-06-07T22:49:41,832 checking whether function 'sysconf' is available... yes 2023-06-07T22:49:41,832 checking whether function 'getcwd' is available... yes 2023-06-07T22:49:41,833 checking whether function 'chmod' is available... yes 2023-06-07T22:49:41,834 checking whether function 'stat' is available... yes 2023-06-07T22:49:41,834 checking whether function 'fstat' is available... yes 2023-06-07T22:49:41,835 checking whether function 'erfc' is available... yes 2023-06-07T22:49:41,836 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-06-07T22:49:42,011 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2023-06-07T22:49:42,057 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpo0588uid[/] 2023-06-07T22:49:42,058 [bold magenta]cwd[/]: /tmp/pip-wheel-tgcb6ip5/pyhmmer_5aaa4d158ca54d9ea2ab55e09b77285c 2023-06-07T22:49:42,058 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2023-06-07T22:49:42,064 ERROR: Failed building wheel for pyhmmer 2023-06-07T22:49:42,070 Failed to build pyhmmer 2023-06-07T22:49:42,073 ERROR: Failed to build one or more wheels 2023-06-07T22:49:42,076 Exception information: 2023-06-07T22:49:42,076 Traceback (most recent call last): 2023-06-07T22:49:42,076 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-06-07T22:49:42,076 status = run_func(*args) 2023-06-07T22:49:42,076 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-06-07T22:49:42,076 return func(self, options, args) 2023-06-07T22:49:42,076 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-06-07T22:49:42,076 raise CommandError("Failed to build one or more wheels") 2023-06-07T22:49:42,076 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-06-07T22:49:42,086 Removed build tracker: '/tmp/pip-build-tracker-2s0ohbvs'