2023-06-09T05:56:27,854 Created temporary directory: /tmp/pip-build-tracker-546j5mpr
2023-06-09T05:56:27,857 Initialized build tracking at /tmp/pip-build-tracker-546j5mpr
2023-06-09T05:56:27,857 Created build tracker: /tmp/pip-build-tracker-546j5mpr
2023-06-09T05:56:27,858 Entered build tracker: /tmp/pip-build-tracker-546j5mpr
2023-06-09T05:56:27,859 Created temporary directory: /tmp/pip-wheel-cwa93xkh
2023-06-09T05:56:27,868 Created temporary directory: /tmp/pip-ephem-wheel-cache-crlxmes5
2023-06-09T05:56:27,926 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-09T05:56:27,934 2 location(s) to search for versions of dendropy:
2023-06-09T05:56:27,934 * https://pypi.org/simple/dendropy/
2023-06-09T05:56:27,934 * https://www.piwheels.org/simple/dendropy/
2023-06-09T05:56:27,935 Fetching project page and analyzing links: https://pypi.org/simple/dendropy/
2023-06-09T05:56:27,936 Getting page https://pypi.org/simple/dendropy/
2023-06-09T05:56:27,941 Found index url https://pypi.org/simple/
2023-06-09T05:56:28,131 Fetched page https://pypi.org/simple/dendropy/ as application/vnd.pypi.simple.v1+json
2023-06-09T05:56:28,145   Found link https://files.pythonhosted.org/packages/03/48/8379b3e170d60052da7ccf3387549af17d46808a39062fbb234df3038fa0/DendroPy-3.7.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.0
2023-06-09T05:56:28,145   Found link https://files.pythonhosted.org/packages/17/0a/914df0e24dc378acdd9cb1705c1fcfcf15dd1da8992de567a4cce85bc31e/DendroPy-3.7.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.1
2023-06-09T05:56:28,146   Found link https://files.pythonhosted.org/packages/a2/f5/5c4fb1cde35799eeacb35ac289c271371a0c0fd3197548fab7e184900cc7/DendroPy-3.8.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.0
2023-06-09T05:56:28,147   Found link https://files.pythonhosted.org/packages/95/73/7b1084d03e025b27c79342d6935810969edb86677ef3e5eb1f9e5aec1e6f/DendroPy-3.8.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.1
2023-06-09T05:56:28,148   Found link https://files.pythonhosted.org/packages/18/2e/141c0d6a99905b9be3256aae6a87504f14853b20e40a6d89c7c4c465769d/DendroPy-3.9.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.9.0
2023-06-09T05:56:28,148   Found link https://files.pythonhosted.org/packages/7e/08/a968b51274c8476084521f97af4e8fadd09a6b42a727141f502cc33767c5/DendroPy-3.10.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.0
2023-06-09T05:56:28,149   Found link https://files.pythonhosted.org/packages/3a/26/552efe612d37cff025f1dd1350eb643edd6dda1cb628d7cbe572e343a049/DendroPy-3.10.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.1
2023-06-09T05:56:28,150   Found link https://files.pythonhosted.org/packages/0f/3e/5549b668d04241c77c8f5b26f0c94a87ad93b6b9089fc6bcd510eba5d5f4/DendroPy-3.11.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.11.0
2023-06-09T05:56:28,150   Found link https://files.pythonhosted.org/packages/43/22/69b7713b094697f8a432abe96c44a155519ef67b3c31221de32f4c3d5fa5/DendroPy-3.12.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.0
2023-06-09T05:56:28,151   Found link https://files.pythonhosted.org/packages/5f/ae/14c92b087632944149cca61ec8daf41eee0083d0fad30c9248edb7e227d2/DendroPy-3.12.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.2
2023-06-09T05:56:28,152   Found link https://files.pythonhosted.org/packages/3d/c0/e0a20d1cf4b268757842a03f36452095fccb8eae5ebd541548e29c6ca1e3/DendroPy-3.12.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.3
2023-06-09T05:56:28,152   Found link https://files.pythonhosted.org/packages/f0/d3/e0180bf1a8d599b8f847ab7a1b19fe4d7a95b3613c57b57108e2a48bb59f/DendroPy-4.0.0.rc1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0.rc1
2023-06-09T05:56:28,153   Found link https://files.pythonhosted.org/packages/55/dd/0d59b7bde4b230fadb999bc84cc45668a53733cb63e4aacf7e6ab4a9e175/DendroPy-4.0.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0
2023-06-09T05:56:28,154   Found link https://files.pythonhosted.org/packages/52/ba/02652626ed0d56afadc990e6540d998217831d856170ff0c68c3afbef866/DendroPy-4.0.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.1
2023-06-09T05:56:28,154   Found link https://files.pythonhosted.org/packages/62/10/117c87b76f5f84d4559bd7ad25af04f11369ef8267f3c8e7d62769efc85d/DendroPy-4.0.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.2
2023-06-09T05:56:28,155   Found link https://files.pythonhosted.org/packages/66/0b/72ca62a6e87ddb9b70cac2cf1fc199ca00127fc168c52bcbcbf30cfb5947/DendroPy-4.0.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.3
2023-06-09T05:56:28,156   Found link https://files.pythonhosted.org/packages/65/3a/19556a58c560de488dffbf3c7fe7c9ed34c1a6223f0dfe971224a42aaf39/DendroPy-4.1.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.1.0
2023-06-09T05:56:28,157   Found link https://files.pythonhosted.org/packages/e6/5a/d48c8d3f8100efd5eb6e6142f28bf1c13200e08882e59596369035ebc138/DendroPy-4.2.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.2.0
2023-06-09T05:56:28,157   Found link https://files.pythonhosted.org/packages/58/14/d4559893d72675b322c1d60229ef3490bc5c2f5b28c5cc339956aaf8f507/DendroPy-4.3.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.3.0
2023-06-09T05:56:28,158   Found link https://files.pythonhosted.org/packages/f5/21/17e4fbb1c2a68421eec43930b1e118660c7483229f1b28ba4402e8856884/DendroPy-4.4.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.4.0
2023-06-09T05:56:28,159   Found link https://files.pythonhosted.org/packages/e0/f3/222e939e250e71234031d182e58704fff1c3296140f91f70d7ef8b3e17a6/DendroPy-4.5.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.1
2023-06-09T05:56:28,159   Found link https://files.pythonhosted.org/packages/f9/10/125c181b1d97ffc4661a60ec897cfe058dc46cb53900d807819464c3510f/DendroPy-4.5.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.2
2023-06-09T05:56:28,160   Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/b0/c0/841e46da39a4dae07a5cd4e7a1c9472acbdd623f820b125b5995dd342c9a/DendroPy-4.6.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/)
2023-06-09T05:56:28,160   Found link https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.0
2023-06-09T05:56:28,161   Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/7c/3b/f880fd07cb79a46ca838e46ba021fcdaa464bb21e2a9264a7afe77046a88/DendroPy-4.6.1-py3-none-any.whl (from https://pypi.org/simple/dendropy/)
2023-06-09T05:56:28,162   Found link https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.1
2023-06-09T05:56:28,162 Fetching project page and analyzing links: https://www.piwheels.org/simple/dendropy/
2023-06-09T05:56:28,163 Getting page https://www.piwheels.org/simple/dendropy/
2023-06-09T05:56:28,166 Found index url https://www.piwheels.org/simple/
2023-06-09T05:56:28,398 Fetched page https://www.piwheels.org/simple/dendropy/ as text/html
2023-06-09T05:56:28,408   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.6.0-py3-none-any.whl#sha256=967847ceda8c3c50c9c82bf0b17ad1cfed383857502a32878e1870fde0b9f662 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,409   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.2-py3-none-any.whl#sha256=7492efc1d60e0d280a9effe9093dd14da694300275c2dbc2c3cd116390521bc3 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,410   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.5.1-py3-none-any.whl#sha256=0113d22b31642c3c63327d0eab46f2aff2079181bb537c2007796802874bed73 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,410   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.4.0-py3-none-any.whl#sha256=04bb1c1125a9435d6f61e956aaa59a6789d16640f9371e367f6182331570eeb9 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,411   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.3.0-py3-none-any.whl#sha256=b762edba2a883b8a9549d498742e7ffe9126f33855d270fc0fa42c0ffd77e224 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,411   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.2.0-py3-none-any.whl#sha256=b708e09e2b790f482496fd2e17b5159e212994a6d7d234771e2c9e5e208aa55e (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,412   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.1.0-py3-none-any.whl#sha256=1b13aa093d01409bfb95728a68dbff117529dc40cd5ac6fa4d4fc30756ef5357 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,412   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.3-py3-none-any.whl#sha256=eea9ba2017437bada349db5b12b6d9c8c6dfcbfea1832bac2a862b3c5503ceb3 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,413   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.2-py3-none-any.whl#sha256=81648919d17fb5fdc36f4053aff572b4a2d358a189d2462e15aab8760eb71d1a (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,413   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.1-py3-none-any.whl#sha256=4ba8a912afd561e3116cdfbcd6c168cafc69eec3339bfdb79858e93000402410 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,414   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0-py3-none-any.whl#sha256=4687108db4e411473e5ccce4ec9a99fc10ad22b8da4c6e817154202a3e6cc0e9 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,414   Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/DendroPy-4.0.0rc1-py3-none-any.whl#sha256=0310d7072108356c0655941033b16778503a2c6ec2d84ac1eeb88a41eb92a543 (from https://www.piwheels.org/simple/dendropy/)
2023-06-09T05:56:28,415 Skipping link: not a file: https://www.piwheels.org/simple/dendropy/
2023-06-09T05:56:28,415 Skipping link: not a file: https://pypi.org/simple/dendropy/
2023-06-09T05:56:28,456 Given no hashes to check 1 links for project 'dendropy': discarding no candidates
2023-06-09T05:56:28,490 Collecting dendropy==4.6.1
2023-06-09T05:56:28,495   Created temporary directory: /tmp/pip-unpack-_s6nmqs2
2023-06-09T05:56:28,872   Downloading DendroPy-4.6.1.tar.gz (15.2 MB)
2023-06-09T05:56:42,814   Added dendropy==4.6.1 from https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-546j5mpr'
2023-06-09T05:56:42,819   Running setup.py (path:/tmp/pip-wheel-cwa93xkh/dendropy_28fa86b264e141a38fcca711f88b5093/setup.py) egg_info for package dendropy
2023-06-09T05:56:42,820   Created temporary directory: /tmp/pip-pip-egg-info-347nuo_r
2023-06-09T05:56:42,821   Preparing metadata (setup.py): started
2023-06-09T05:56:42,823   Running command python setup.py egg_info
2023-06-09T05:56:44,381   running egg_info
2023-06-09T05:56:44,384   creating /tmp/pip-pip-egg-info-347nuo_r/DendroPy.egg-info
2023-06-09T05:56:44,446   writing /tmp/pip-pip-egg-info-347nuo_r/DendroPy.egg-info/PKG-INFO
2023-06-09T05:56:44,451   writing dependency_links to /tmp/pip-pip-egg-info-347nuo_r/DendroPy.egg-info/dependency_links.txt
2023-06-09T05:56:44,456   writing requirements to /tmp/pip-pip-egg-info-347nuo_r/DendroPy.egg-info/requires.txt
2023-06-09T05:56:44,458   writing top-level names to /tmp/pip-pip-egg-info-347nuo_r/DendroPy.egg-info/top_level.txt
2023-06-09T05:56:44,461   writing manifest file '/tmp/pip-pip-egg-info-347nuo_r/DendroPy.egg-info/SOURCES.txt'
2023-06-09T05:56:44,763   reading manifest file '/tmp/pip-pip-egg-info-347nuo_r/DendroPy.egg-info/SOURCES.txt'
2023-06-09T05:56:44,766   reading manifest template 'MANIFEST.in'
2023-06-09T05:56:44,769   -setup.py: DendroPy version 4.6.1
2023-06-09T05:56:44,769   -setup.py: using setuptools ('/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py')
2023-06-09T05:56:44,769   -setup.py: searching for packages
2023-06-09T05:56:44,770   -setup.py: packages identified:
2023-06-09T05:56:44,770              - dendropy
2023-06-09T05:56:44,771              - dendropy.mathlib
2023-06-09T05:56:44,771              - dendropy.simulate
2023-06-09T05:56:44,772              - dendropy.interop
2023-06-09T05:56:44,772              - dendropy.dataio
2023-06-09T05:56:44,772              - dendropy.datamodel
2023-06-09T05:56:44,773              - dendropy.legacy
2023-06-09T05:56:44,773              - dendropy.calculate
2023-06-09T05:56:44,774              - dendropy.model
2023-06-09T05:56:44,774              - dendropy.utility
2023-06-09T05:56:44,775              - dendropy.datamodel.treemodel
2023-06-09T05:56:44,775              - dendropy.utility.libexec
2023-06-09T05:56:44,776   -setup.py: scripts identified:
2023-06-09T05:56:44,776              - applications/sumtrees/sumtrees.py
2023-06-09T05:56:44,776              - applications/sumlabels/sumlabels.py
2023-06-09T05:56:44,777              - applications/dendropy-format/dendropy-format
2023-06-09T05:56:44,777   -setup.py: setuptools command extensions are available
2023-06-09T05:56:44,778   warning: no files found matching 'doc/Makefile'
2023-06-09T05:56:44,778   warning: no files found matching '*' under directory 'doc/source'
2023-06-09T05:56:45,218   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2023-06-09T05:56:45,225   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2023-06-09T05:56:45,231   warning: no previously-included files matching '.gitignore' found anywhere in distribution
2023-06-09T05:56:45,236   warning: no previously-included files matching '.gitattributes' found anywhere in distribution
2023-06-09T05:56:45,240   warning: no previously-included files matching '.idea' found anywhere in distribution
2023-06-09T05:56:45,245   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2023-06-09T05:56:45,246   adding license file 'LICENSE.rst'
2023-06-09T05:56:45,247   adding license file 'AUTHORS.rst'
2023-06-09T05:56:45,317   writing manifest file '/tmp/pip-pip-egg-info-347nuo_r/DendroPy.egg-info/SOURCES.txt'
2023-06-09T05:56:45,442   Preparing metadata (setup.py): finished with status 'done'
2023-06-09T05:56:45,456   Source in /tmp/pip-wheel-cwa93xkh/dendropy_28fa86b264e141a38fcca711f88b5093 has version 4.6.1, which satisfies requirement dendropy==4.6.1 from https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz
2023-06-09T05:56:45,458   Removed dendropy==4.6.1 from https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-546j5mpr'
2023-06-09T05:56:45,469 Created temporary directory: /tmp/pip-unpack-hbwzl3cl
2023-06-09T05:56:45,470 Building wheels for collected packages: dendropy
2023-06-09T05:56:45,479   Created temporary directory: /tmp/pip-wheel-m416i91n
2023-06-09T05:56:45,480   Building wheel for dendropy (setup.py): started
2023-06-09T05:56:45,482   Destination directory: /tmp/pip-wheel-m416i91n
2023-06-09T05:56:45,483   Running command python setup.py bdist_wheel
2023-06-09T05:56:46,582   -setup.py: DendroPy version 4.6.1
2023-06-09T05:56:46,584   -setup.py: using setuptools ('/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py')
2023-06-09T05:56:46,584   -setup.py: searching for packages
2023-06-09T05:56:46,595   -setup.py: packages identified:
2023-06-09T05:56:46,596              - dendropy
2023-06-09T05:56:46,596              - dendropy.mathlib
2023-06-09T05:56:46,597              - dendropy.simulate
2023-06-09T05:56:46,597              - dendropy.interop
2023-06-09T05:56:46,597              - dendropy.dataio
2023-06-09T05:56:46,598              - dendropy.datamodel
2023-06-09T05:56:46,598              - dendropy.legacy
2023-06-09T05:56:46,598              - dendropy.calculate
2023-06-09T05:56:46,599              - dendropy.model
2023-06-09T05:56:46,599              - dendropy.utility
2023-06-09T05:56:46,600              - dendropy.datamodel.treemodel
2023-06-09T05:56:46,600              - dendropy.utility.libexec
2023-06-09T05:56:46,600   -setup.py: scripts identified:
2023-06-09T05:56:46,601              - applications/sumtrees/sumtrees.py
2023-06-09T05:56:46,601              - applications/sumlabels/sumlabels.py
2023-06-09T05:56:46,601              - applications/dendropy-format/dendropy-format
2023-06-09T05:56:46,602   -setup.py: setuptools command extensions are available
2023-06-09T05:56:47,067   running bdist_wheel
2023-06-09T05:56:47,762   running build
2023-06-09T05:56:47,762   running build_py
2023-06-09T05:56:47,831   creating build
2023-06-09T05:56:47,832   creating build/lib
2023-06-09T05:56:47,833   creating build/lib/dendropy
2023-06-09T05:56:47,835   copying src/dendropy/__init__.py -> build/lib/dendropy
2023-06-09T05:56:47,840   copying src/dendropy/__main__.py -> build/lib/dendropy
2023-06-09T05:56:47,844   creating build/lib/dendropy/mathlib
2023-06-09T05:56:47,846   copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib
2023-06-09T05:56:47,849   copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib
2023-06-09T05:56:47,853   copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib
2023-06-09T05:56:47,856   copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib
2023-06-09T05:56:47,861   creating build/lib/dendropy/simulate
2023-06-09T05:56:47,863   copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate
2023-06-09T05:56:47,866   copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate
2023-06-09T05:56:47,869   copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate
2023-06-09T05:56:47,873   copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate
2023-06-09T05:56:47,880   creating build/lib/dendropy/interop
2023-06-09T05:56:47,882   copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,887   copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,891   copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,894   copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,899   copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,905   copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,911   copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,914   copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,918   copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,922   copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,926   copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,931   copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,935   copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,941   copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop
2023-06-09T05:56:47,949   creating build/lib/dendropy/dataio
2023-06-09T05:56:47,951   copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,957   copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,963   copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,968   copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,972   copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,975   copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,982   copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,985   copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,989   copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,992   copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio
2023-06-09T05:56:47,998   copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,004   copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,008   copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,011   copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,015   copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,019   copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,024   copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,030   copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,035   copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,039   copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio
2023-06-09T05:56:48,048   creating build/lib/dendropy/datamodel
2023-06-09T05:56:48,050   copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel
2023-06-09T05:56:48,056   copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel
2023-06-09T05:56:48,064   copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel
2023-06-09T05:56:48,067   copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel
2023-06-09T05:56:48,072   copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel
2023-06-09T05:56:48,082   copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel
2023-06-09T05:56:48,096   copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel
2023-06-09T05:56:48,107   creating build/lib/dendropy/legacy
2023-06-09T05:56:48,109   copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,113   copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,117   copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,121   copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,125   copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,129   copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,133   copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,138   copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,142   copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,145   copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,149   copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,153   copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,156   copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,160   copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy
2023-06-09T05:56:48,167   creating build/lib/dendropy/calculate
2023-06-09T05:56:48,168   copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,172   copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,179   copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,183   copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,188   copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,193   copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,196   copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,200   copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,206   copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,211   copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,216   copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,221   copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate
2023-06-09T05:56:48,228   creating build/lib/dendropy/model
2023-06-09T05:56:48,229   copying src/dendropy/model/discrete.py -> build/lib/dendropy/model
2023-06-09T05:56:48,235   copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model
2023-06-09T05:56:48,239   copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model
2023-06-09T05:56:48,244   copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model
2023-06-09T05:56:48,247   copying src/dendropy/model/__init__.py -> build/lib/dendropy/model
2023-06-09T05:56:48,251   copying src/dendropy/model/continuous.py -> build/lib/dendropy/model
2023-06-09T05:56:48,255   copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model
2023-06-09T05:56:48,261   copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model
2023-06-09T05:56:48,270   copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model
2023-06-09T05:56:48,277   copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model
2023-06-09T05:56:48,286   creating build/lib/dendropy/utility
2023-06-09T05:56:48,289   copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,293   copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,298   copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,301   copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,304   copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,308   copying src/dendropy/utility/error.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,313   copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,316   copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,320   copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,324   copying src/dendropy/utility/container.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,331   copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,335   copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,339   copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,343   copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,348   copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,352   copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,356   copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,360   copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility
2023-06-09T05:56:48,366   creating build/lib/dendropy/datamodel/treemodel
2023-06-09T05:56:48,368   copying src/dendropy/datamodel/treemodel/_tree.py -> build/lib/dendropy/datamodel/treemodel
2023-06-09T05:56:48,382   copying src/dendropy/datamodel/treemodel/_node.py -> build/lib/dendropy/datamodel/treemodel
2023-06-09T05:56:48,391   copying src/dendropy/datamodel/treemodel/__init__.py -> build/lib/dendropy/datamodel/treemodel
2023-06-09T05:56:48,394   copying src/dendropy/datamodel/treemodel/_edge.py -> build/lib/dendropy/datamodel/treemodel
2023-06-09T05:56:48,399   copying src/dendropy/datamodel/treemodel/_bipartition.py -> build/lib/dendropy/datamodel/treemodel
2023-06-09T05:56:48,407   creating build/lib/dendropy/utility/libexec
2023-06-09T05:56:48,409   copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec
2023-06-09T05:56:48,412   running egg_info
2023-06-09T05:56:48,558   writing src/DendroPy.egg-info/PKG-INFO
2023-06-09T05:56:48,562   writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
2023-06-09T05:56:48,566   deleting src/DendroPy.egg-info/entry_points.txt
2023-06-09T05:56:48,568   writing requirements to src/DendroPy.egg-info/requires.txt
2023-06-09T05:56:48,571   writing top-level names to src/DendroPy.egg-info/top_level.txt
2023-06-09T05:56:48,665   reading manifest file 'src/DendroPy.egg-info/SOURCES.txt'
2023-06-09T05:56:48,720   reading manifest template 'MANIFEST.in'
2023-06-09T05:56:48,722   warning: no files found matching 'doc/Makefile'
2023-06-09T05:56:48,723   warning: no files found matching '*' under directory 'doc/source'
2023-06-09T05:56:49,146   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2023-06-09T05:56:49,157   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2023-06-09T05:56:49,164   warning: no previously-included files matching '.gitignore' found anywhere in distribution
2023-06-09T05:56:49,171   warning: no previously-included files matching '.gitattributes' found anywhere in distribution
2023-06-09T05:56:49,177   warning: no previously-included files matching '.idea' found anywhere in distribution
2023-06-09T05:56:49,184   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2023-06-09T05:56:49,185   adding license file 'LICENSE.rst'
2023-06-09T05:56:49,185   adding license file 'AUTHORS.rst'
2023-06-09T05:56:49,286   writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
2023-06-09T05:56:49,390   running build_scripts
2023-06-09T05:56:49,391   creating build/scripts-3.7
2023-06-09T05:56:49,393   copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.7
2023-06-09T05:56:49,409   copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.7
2023-06-09T05:56:49,414   copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.7
2023-06-09T05:56:49,417   changing mode of build/scripts-3.7/sumtrees.py from 644 to 755
2023-06-09T05:56:49,419   changing mode of build/scripts-3.7/sumlabels.py from 644 to 755
2023-06-09T05:56:49,420   changing mode of build/scripts-3.7/dendropy-format from 644 to 755
2023-06-09T05:56:49,497   /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-06-09T05:56:49,497   !!

2023-06-09T05:56:49,498           ********************************************************************************
2023-06-09T05:56:49,498           Please avoid running ``setup.py`` directly.
2023-06-09T05:56:49,499           Instead, use pypa/build, pypa/installer, pypa/build or
2023-06-09T05:56:49,499           other standards-based tools.

2023-06-09T05:56:49,500           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-06-09T05:56:49,500           ********************************************************************************

2023-06-09T05:56:49,500   !!
2023-06-09T05:56:49,501     self.initialize_options()
2023-06-09T05:56:49,565   installing to build/bdist.linux-armv7l/wheel
2023-06-09T05:56:49,566   running install
2023-06-09T05:56:49,626   running install_lib
2023-06-09T05:56:49,693   creating build/bdist.linux-armv7l
2023-06-09T05:56:49,695   creating build/bdist.linux-armv7l/wheel
2023-06-09T05:56:49,699   creating build/bdist.linux-armv7l/wheel/dendropy
2023-06-09T05:56:49,703   creating build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-06-09T05:56:49,705   copying build/lib/dendropy/mathlib/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-06-09T05:56:49,710   copying build/lib/dendropy/mathlib/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-06-09T05:56:49,714   copying build/lib/dendropy/mathlib/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-06-09T05:56:49,718   copying build/lib/dendropy/mathlib/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/mathlib
2023-06-09T05:56:49,724   creating build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-06-09T05:56:49,726   copying build/lib/dendropy/simulate/charsim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-06-09T05:56:49,730   copying build/lib/dendropy/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-06-09T05:56:49,735   copying build/lib/dendropy/simulate/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-06-09T05:56:49,739   copying build/lib/dendropy/simulate/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/simulate
2023-06-09T05:56:49,745   creating build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,748   copying build/lib/dendropy/interop/itol.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,753   copying build/lib/dendropy/interop/gbif.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,758   copying build/lib/dendropy/interop/biopython.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,763   copying build/lib/dendropy/interop/seqgen.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,768   copying build/lib/dendropy/interop/paup.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,774   copying build/lib/dendropy/interop/genbank.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,781   copying build/lib/dendropy/interop/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,786   copying build/lib/dendropy/interop/entrez.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,790   copying build/lib/dendropy/interop/rspr.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,794   copying build/lib/dendropy/interop/ape.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,799   copying build/lib/dendropy/interop/rstats.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,804   copying build/lib/dendropy/interop/ete.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,808   copying build/lib/dendropy/interop/raxml.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,815   copying build/lib/dendropy/interop/muscle.py -> build/bdist.linux-armv7l/wheel/dendropy/interop
2023-06-09T05:56:49,821   creating build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,822   copying build/lib/dendropy/dataio/nexusprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,828   copying build/lib/dendropy/dataio/nexmlwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,833   copying build/lib/dendropy/dataio/xmlprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,837   copying build/lib/dendropy/dataio/fastareader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,841   copying build/lib/dendropy/dataio/nexmlyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,845   copying build/lib/dendropy/dataio/nexmlreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,851   copying build/lib/dendropy/dataio/fastawriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,854   copying build/lib/dendropy/dataio/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,858   copying build/lib/dendropy/dataio/newick.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,861   copying build/lib/dendropy/dataio/newickwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,866   copying build/lib/dendropy/dataio/nexuswriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,871   copying build/lib/dendropy/dataio/phylipwriter.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,875   copying build/lib/dendropy/dataio/newickyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,879   copying build/lib/dendropy/dataio/nexusyielder.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,883   copying build/lib/dendropy/dataio/multiphylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,886   copying build/lib/dendropy/dataio/ioservice.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,891   copying build/lib/dendropy/dataio/newickreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,897   copying build/lib/dendropy/dataio/phylipreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,902   copying build/lib/dendropy/dataio/tokenizer.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,906   copying build/lib/dendropy/dataio/nexusreader.py -> build/bdist.linux-armv7l/wheel/dendropy/dataio
2023-06-09T05:56:49,913   copying build/lib/dendropy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy
2023-06-09T05:56:49,917   copying build/lib/dendropy/__main__.py -> build/bdist.linux-armv7l/wheel/dendropy
2023-06-09T05:56:49,921   creating build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-06-09T05:56:49,923   copying build/lib/dendropy/datamodel/charstatemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-06-09T05:56:49,930   copying build/lib/dendropy/datamodel/basemodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-06-09T05:56:49,938   copying build/lib/dendropy/datamodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-06-09T05:56:49,943   creating build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-06-09T05:56:49,946   copying build/lib/dendropy/datamodel/treemodel/_tree.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-06-09T05:56:49,960   copying build/lib/dendropy/datamodel/treemodel/_node.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-06-09T05:56:49,969   copying build/lib/dendropy/datamodel/treemodel/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-06-09T05:56:49,973   copying build/lib/dendropy/datamodel/treemodel/_edge.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-06-09T05:56:49,977   copying build/lib/dendropy/datamodel/treemodel/_bipartition.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel
2023-06-09T05:56:49,982   copying build/lib/dendropy/datamodel/datasetmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-06-09T05:56:49,988   copying build/lib/dendropy/datamodel/treecollectionmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-06-09T05:56:49,999   copying build/lib/dendropy/datamodel/taxonmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-06-09T05:56:50,007   copying build/lib/dendropy/datamodel/charmatrixmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/datamodel
2023-06-09T05:56:50,016   creating build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,018   copying build/lib/dendropy/legacy/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,022   copying build/lib/dendropy/legacy/treemanip.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,026   copying build/lib/dendropy/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,030   copying build/lib/dendropy/legacy/seqmodel.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,033   copying build/lib/dendropy/legacy/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,038   copying build/lib/dendropy/legacy/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,041   copying build/lib/dendropy/legacy/seqsim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,045   copying build/lib/dendropy/legacy/treecalc.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,050   copying build/lib/dendropy/legacy/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,053   copying build/lib/dendropy/legacy/treesim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,057   copying build/lib/dendropy/legacy/treesplit.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,062   copying build/lib/dendropy/legacy/popgensim.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,065   copying build/lib/dendropy/legacy/ncbi.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,070   copying build/lib/dendropy/legacy/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/legacy
2023-06-09T05:56:50,075   creating build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,077   copying build/lib/dendropy/calculate/treescore.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,080   copying build/lib/dendropy/calculate/phylogeneticdistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,088   copying build/lib/dendropy/calculate/probability.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,093   copying build/lib/dendropy/calculate/treemeasure.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,098   copying build/lib/dendropy/calculate/treecompare.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,104   copying build/lib/dendropy/calculate/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,108   copying build/lib/dendropy/calculate/combinatorics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,112   copying build/lib/dendropy/calculate/popgenstat.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,118   copying build/lib/dendropy/calculate/profiledistance.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,123   copying build/lib/dendropy/calculate/statistics.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,128   copying build/lib/dendropy/calculate/treesum.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,133   copying build/lib/dendropy/calculate/mathfn.py -> build/bdist.linux-armv7l/wheel/dendropy/calculate
2023-06-09T05:56:50,138   creating build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,139   copying build/lib/dendropy/model/discrete.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,144   copying build/lib/dendropy/model/multispeciescoalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,149   copying build/lib/dendropy/model/reconcile.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,154   copying build/lib/dendropy/model/treeshape.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,157   copying build/lib/dendropy/model/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,161   copying build/lib/dendropy/model/continuous.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,166   copying build/lib/dendropy/model/protractedspeciation.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,172   copying build/lib/dendropy/model/birthdeath.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,181   copying build/lib/dendropy/model/parsimony.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,185   copying build/lib/dendropy/model/coalescent.py -> build/bdist.linux-armv7l/wheel/dendropy/model
2023-06-09T05:56:50,192   creating build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,194   copying build/lib/dendropy/utility/messaging.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,198   copying build/lib/dendropy/utility/filesys.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,202   copying build/lib/dendropy/utility/timeprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,207   creating build/bdist.linux-armv7l/wheel/dendropy/utility/libexec
2023-06-09T05:56:50,208   copying build/lib/dendropy/utility/libexec/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility/libexec
2023-06-09T05:56:50,212   copying build/lib/dendropy/utility/bitprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,217   copying build/lib/dendropy/utility/cli.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,222   copying build/lib/dendropy/utility/error.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,226   copying build/lib/dendropy/utility/terminal.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,230   copying build/lib/dendropy/utility/bibtex.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,234   copying build/lib/dendropy/utility/metavar.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,238   copying build/lib/dendropy/utility/container.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,244   copying build/lib/dendropy/utility/__init__.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,248   copying build/lib/dendropy/utility/debug.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,252   copying build/lib/dendropy/utility/processio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,255   copying build/lib/dendropy/utility/textprocessing.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,259   copying build/lib/dendropy/utility/vcsinfo.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,264   copying build/lib/dendropy/utility/deprecate.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,267   copying build/lib/dendropy/utility/constants.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,271   copying build/lib/dendropy/utility/urlio.py -> build/bdist.linux-armv7l/wheel/dendropy/utility
2023-06-09T05:56:50,274   running install_egg_info
2023-06-09T05:56:50,350   Copying src/DendroPy.egg-info to build/bdist.linux-armv7l/wheel/DendroPy-4.6.1-py3.7.egg-info
2023-06-09T05:56:50,377   running install_scripts
2023-06-09T05:56:50,379   creating build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.data
2023-06-09T05:56:50,380   creating build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.data/scripts
2023-06-09T05:56:50,382   copying build/scripts-3.7/sumlabels.py -> build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.data/scripts
2023-06-09T05:56:50,387   copying build/scripts-3.7/sumtrees.py -> build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.data/scripts
2023-06-09T05:56:50,398   copying build/scripts-3.7/dendropy-format -> build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.data/scripts
2023-06-09T05:56:50,402   changing mode of build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.data/scripts/sumlabels.py to 755
2023-06-09T05:56:50,403   changing mode of build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.data/scripts/sumtrees.py to 755
2023-06-09T05:56:50,404   changing mode of build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.data/scripts/dendropy-format to 755
2023-06-09T05:56:50,439   creating build/bdist.linux-armv7l/wheel/DendroPy-4.6.1.dist-info/WHEEL
2023-06-09T05:56:50,444   creating '/tmp/pip-wheel-m416i91n/DendroPy-4.6.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-06-09T05:56:50,451   adding 'DendroPy-4.6.1.data/scripts/dendropy-format'
2023-06-09T05:56:50,456   adding 'DendroPy-4.6.1.data/scripts/sumlabels.py'
2023-06-09T05:56:50,482   adding 'DendroPy-4.6.1.data/scripts/sumtrees.py'
2023-06-09T05:56:50,492   adding 'dendropy/__init__.py'
2023-06-09T05:56:50,495   adding 'dendropy/__main__.py'
2023-06-09T05:56:50,499   adding 'dendropy/calculate/__init__.py'
2023-06-09T05:56:50,501   adding 'dendropy/calculate/combinatorics.py'
2023-06-09T05:56:50,504   adding 'dendropy/calculate/mathfn.py'
2023-06-09T05:56:50,520   adding 'dendropy/calculate/phylogeneticdistance.py'
2023-06-09T05:56:50,526   adding 'dendropy/calculate/popgenstat.py'
2023-06-09T05:56:50,531   adding 'dendropy/calculate/probability.py'
2023-06-09T05:56:50,536   adding 'dendropy/calculate/profiledistance.py'
2023-06-09T05:56:50,541   adding 'dendropy/calculate/statistics.py'
2023-06-09T05:56:50,550   adding 'dendropy/calculate/treecompare.py'
2023-06-09T05:56:50,555   adding 'dendropy/calculate/treemeasure.py'
2023-06-09T05:56:50,558   adding 'dendropy/calculate/treescore.py'
2023-06-09T05:56:50,563   adding 'dendropy/calculate/treesum.py'
2023-06-09T05:56:50,568   adding 'dendropy/dataio/__init__.py'
2023-06-09T05:56:50,572   adding 'dendropy/dataio/fastareader.py'
2023-06-09T05:56:50,574   adding 'dendropy/dataio/fastawriter.py'
2023-06-09T05:56:50,580   adding 'dendropy/dataio/ioservice.py'
2023-06-09T05:56:50,583   adding 'dendropy/dataio/multiphylipreader.py'
2023-06-09T05:56:50,586   adding 'dendropy/dataio/newick.py'
2023-06-09T05:56:50,595   adding 'dendropy/dataio/newickreader.py'
2023-06-09T05:56:50,601   adding 'dendropy/dataio/newickwriter.py'
2023-06-09T05:56:50,605   adding 'dendropy/dataio/newickyielder.py'
2023-06-09T05:56:50,615   adding 'dendropy/dataio/nexmlreader.py'
2023-06-09T05:56:50,623   adding 'dendropy/dataio/nexmlwriter.py'
2023-06-09T05:56:50,627   adding 'dendropy/dataio/nexmlyielder.py'
2023-06-09T05:56:50,633   adding 'dendropy/dataio/nexusprocessing.py'
2023-06-09T05:56:50,649   adding 'dendropy/dataio/nexusreader.py'
2023-06-09T05:56:50,658   adding 'dendropy/dataio/nexuswriter.py'
2023-06-09T05:56:50,662   adding 'dendropy/dataio/nexusyielder.py'
2023-06-09T05:56:50,667   adding 'dendropy/dataio/phylipreader.py'
2023-06-09T05:56:50,670   adding 'dendropy/dataio/phylipwriter.py'
2023-06-09T05:56:50,674   adding 'dendropy/dataio/tokenizer.py'
2023-06-09T05:56:50,678   adding 'dendropy/dataio/xmlprocessing.py'
2023-06-09T05:56:50,682   adding 'dendropy/datamodel/__init__.py'
2023-06-09T05:56:50,696   adding 'dendropy/datamodel/basemodel.py'
2023-06-09T05:56:50,719   adding 'dendropy/datamodel/charmatrixmodel.py'
2023-06-09T05:56:50,733   adding 'dendropy/datamodel/charstatemodel.py'
2023-06-09T05:56:50,741   adding 'dendropy/datamodel/datasetmodel.py'
2023-06-09T05:56:50,763   adding 'dendropy/datamodel/taxonmodel.py'
2023-06-09T05:56:50,796   adding 'dendropy/datamodel/treecollectionmodel.py'
2023-06-09T05:56:50,802   adding 'dendropy/datamodel/treemodel/__init__.py'
2023-06-09T05:56:50,809   adding 'dendropy/datamodel/treemodel/_bipartition.py'
2023-06-09T05:56:50,813   adding 'dendropy/datamodel/treemodel/_edge.py'
2023-06-09T05:56:50,830   adding 'dendropy/datamodel/treemodel/_node.py'
2023-06-09T05:56:50,876   adding 'dendropy/datamodel/treemodel/_tree.py'
2023-06-09T05:56:50,884   adding 'dendropy/interop/__init__.py'
2023-06-09T05:56:50,888   adding 'dendropy/interop/ape.py'
2023-06-09T05:56:50,890   adding 'dendropy/interop/biopython.py'
2023-06-09T05:56:50,893   adding 'dendropy/interop/entrez.py'
2023-06-09T05:56:50,896   adding 'dendropy/interop/ete.py'
2023-06-09T05:56:50,901   adding 'dendropy/interop/gbif.py'
2023-06-09T05:56:50,910   adding 'dendropy/interop/genbank.py'
2023-06-09T05:56:50,915   adding 'dendropy/interop/itol.py'
2023-06-09T05:56:50,918   adding 'dendropy/interop/muscle.py'
2023-06-09T05:56:50,928   adding 'dendropy/interop/paup.py'
2023-06-09T05:56:50,939   adding 'dendropy/interop/raxml.py'
2023-06-09T05:56:50,943   adding 'dendropy/interop/rspr.py'
2023-06-09T05:56:50,946   adding 'dendropy/interop/rstats.py'
2023-06-09T05:56:50,950   adding 'dendropy/interop/seqgen.py'
2023-06-09T05:56:50,955   adding 'dendropy/legacy/__init__.py'
2023-06-09T05:56:50,958   adding 'dendropy/legacy/coalescent.py'
2023-06-09T05:56:50,960   adding 'dendropy/legacy/continuous.py'
2023-06-09T05:56:50,965   adding 'dendropy/legacy/ncbi.py'
2023-06-09T05:56:50,968   adding 'dendropy/legacy/popgensim.py'
2023-06-09T05:56:50,971   adding 'dendropy/legacy/popgenstat.py'
2023-06-09T05:56:50,973   adding 'dendropy/legacy/reconcile.py'
2023-06-09T05:56:50,976   adding 'dendropy/legacy/seqmodel.py'
2023-06-09T05:56:50,979   adding 'dendropy/legacy/seqsim.py'
2023-06-09T05:56:50,983   adding 'dendropy/legacy/treecalc.py'
2023-06-09T05:56:50,985   adding 'dendropy/legacy/treemanip.py'
2023-06-09T05:56:50,988   adding 'dendropy/legacy/treesim.py'
2023-06-09T05:56:50,992   adding 'dendropy/legacy/treesplit.py'
2023-06-09T05:56:50,995   adding 'dendropy/legacy/treesum.py'
2023-06-09T05:56:50,998   adding 'dendropy/mathlib/__init__.py'
2023-06-09T05:56:51,001   adding 'dendropy/mathlib/mathfn.py'
2023-06-09T05:56:51,003   adding 'dendropy/mathlib/probability.py'
2023-06-09T05:56:51,006   adding 'dendropy/mathlib/statistics.py'
2023-06-09T05:56:51,010   adding 'dendropy/model/__init__.py'
2023-06-09T05:56:51,028   adding 'dendropy/model/birthdeath.py'
2023-06-09T05:56:51,040   adding 'dendropy/model/coalescent.py'
2023-06-09T05:56:51,047   adding 'dendropy/model/continuous.py'
2023-06-09T05:56:51,053   adding 'dendropy/model/discrete.py'
2023-06-09T05:56:51,059   adding 'dendropy/model/multispeciescoalescent.py'
2023-06-09T05:56:51,064   adding 'dendropy/model/parsimony.py'
2023-06-09T05:56:51,075   adding 'dendropy/model/protractedspeciation.py'
2023-06-09T05:56:51,083   adding 'dendropy/model/reconcile.py'
2023-06-09T05:56:51,086   adding 'dendropy/model/treeshape.py'
2023-06-09T05:56:51,090   adding 'dendropy/simulate/__init__.py'
2023-06-09T05:56:51,093   adding 'dendropy/simulate/charsim.py'
2023-06-09T05:56:51,097   adding 'dendropy/simulate/popgensim.py'
2023-06-09T05:56:51,100   adding 'dendropy/simulate/treesim.py'
2023-06-09T05:56:51,104   adding 'dendropy/utility/__init__.py'
2023-06-09T05:56:51,108   adding 'dendropy/utility/bibtex.py'
2023-06-09T05:56:51,111   adding 'dendropy/utility/bitprocessing.py'
2023-06-09T05:56:51,115   adding 'dendropy/utility/cli.py'
2023-06-09T05:56:51,118   adding 'dendropy/utility/constants.py'
2023-06-09T05:56:51,130   adding 'dendropy/utility/container.py'
2023-06-09T05:56:51,134   adding 'dendropy/utility/debug.py'
2023-06-09T05:56:51,137   adding 'dendropy/utility/deprecate.py'
2023-06-09T05:56:51,140   adding 'dendropy/utility/error.py'
2023-06-09T05:56:51,145   adding 'dendropy/utility/filesys.py'
2023-06-09T05:56:51,148   adding 'dendropy/utility/messaging.py'
2023-06-09T05:56:51,151   adding 'dendropy/utility/metavar.py'
2023-06-09T05:56:51,154   adding 'dendropy/utility/processio.py'
2023-06-09T05:56:51,157   adding 'dendropy/utility/terminal.py'
2023-06-09T05:56:51,160   adding 'dendropy/utility/textprocessing.py'
2023-06-09T05:56:51,163   adding 'dendropy/utility/timeprocessing.py'
2023-06-09T05:56:51,167   adding 'dendropy/utility/urlio.py'
2023-06-09T05:56:51,170   adding 'dendropy/utility/vcsinfo.py'
2023-06-09T05:56:51,174   adding 'dendropy/utility/libexec/__init__.py'
2023-06-09T05:56:51,176   adding 'DendroPy-4.6.1.dist-info/AUTHORS.rst'
2023-06-09T05:56:51,179   adding 'DendroPy-4.6.1.dist-info/LICENSE.rst'
2023-06-09T05:56:51,182   adding 'DendroPy-4.6.1.dist-info/METADATA'
2023-06-09T05:56:51,184   adding 'DendroPy-4.6.1.dist-info/WHEEL'
2023-06-09T05:56:51,186   adding 'DendroPy-4.6.1.dist-info/top_level.txt'
2023-06-09T05:56:51,188   adding 'DendroPy-4.6.1.dist-info/zip-safe'
2023-06-09T05:56:51,193   adding 'DendroPy-4.6.1.dist-info/RECORD'
2023-06-09T05:56:51,215   removing build/bdist.linux-armv7l/wheel
2023-06-09T05:56:51,438   Building wheel for dendropy (setup.py): finished with status 'done'
2023-06-09T05:56:51,458   Created wheel for dendropy: filename=DendroPy-4.6.1-py3-none-any.whl size=458422 sha256=da58df7fced8722b607b168cb9ffec744a299b5ebdebb62786835351122e5236
2023-06-09T05:56:51,461   Stored in directory: /tmp/pip-ephem-wheel-cache-crlxmes5/wheels/c8/bf/03/f61d85e94ea55be64c0c056685e11dc08c28d5f13b59193c3e
2023-06-09T05:56:51,497 Successfully built dendropy
2023-06-09T05:56:51,537 Removed build tracker: '/tmp/pip-build-tracker-546j5mpr'