2023-06-13T19:56:35,276 Created temporary directory: /tmp/pip-build-tracker-4gufs8in
2023-06-13T19:56:35,279 Initialized build tracking at /tmp/pip-build-tracker-4gufs8in
2023-06-13T19:56:35,279 Created build tracker: /tmp/pip-build-tracker-4gufs8in
2023-06-13T19:56:35,279 Entered build tracker: /tmp/pip-build-tracker-4gufs8in
2023-06-13T19:56:35,281 Created temporary directory: /tmp/pip-wheel-9pflbkar
2023-06-13T19:56:35,289 Created temporary directory: /tmp/pip-ephem-wheel-cache-jxsuotbk
2023-06-13T19:56:35,342 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-13T19:56:35,350 2 location(s) to search for versions of flair-brookslab:
2023-06-13T19:56:35,350 * https://pypi.org/simple/flair-brookslab/
2023-06-13T19:56:35,350 * https://www.piwheels.org/simple/flair-brookslab/
2023-06-13T19:56:35,351 Fetching project page and analyzing links: https://pypi.org/simple/flair-brookslab/
2023-06-13T19:56:35,352 Getting page https://pypi.org/simple/flair-brookslab/
2023-06-13T19:56:35,357 Found index url https://pypi.org/simple/
2023-06-13T19:56:35,549 Fetched page https://pypi.org/simple/flair-brookslab/ as application/vnd.pypi.simple.v1+json
2023-06-13T19:56:35,558   Found link https://files.pythonhosted.org/packages/7b/b0/81e9bccbec5b1eb63764e1629d4f6e4173d4e66a5a7f9380943d5721524d/flair-brookslab-1.6.0.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.0
2023-06-13T19:56:35,559   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/9e/2f/b358fc9d63fd1a681dfdf061864a5c7024d691ccd13de2ecf96c5771e90b/flair_brookslab-1.6.0-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,560   Found link https://files.pythonhosted.org/packages/42/18/086b0e1cf3edfbc353025a02b0fb2aa146126e48a5853b364f2666d90be9/flair-brookslab-1.6.1.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.1
2023-06-13T19:56:35,561   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/d8/5b/98f7e961a43cd0be92151fd25d89a1284996cc472e64e4f72c7b3fe7c8fc/flair_brookslab-1.6.1-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,562   Found link https://files.pythonhosted.org/packages/20/33/7549a3646a139bb908105ac74ce959749e1325d5c2f76c9d337fdca944de/flair-brookslab-1.6.2.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.2
2023-06-13T19:56:35,563   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/82/51/d0cbb16809fc922533db0322bd274b3a551593217c928177c86c295e61f6/flair_brookslab-1.6.2-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,564   Found link https://files.pythonhosted.org/packages/c4/81/3be197c295e863ea64962052372735e595b25c944c07238da52650f5c702/flair-brookslab-1.6.3.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.3
2023-06-13T19:56:35,565   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/d9/a3/187bd95e235005d802bfd2ac7f7a0ea6b1ddff9bc2209083072e6af0cd53/flair_brookslab-1.6.3-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,566   Found link https://files.pythonhosted.org/packages/42/10/34e93785d76f92d9ed4b2516573dd1c74b04d746faeb757386ebbe645049/flair-brookslab-1.6.4.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.4
2023-06-13T19:56:35,567   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/bc/3d/558f724ada9f2f0b086ca98b5ca14c05829bbbccec27224b5c1ca7ddcb96/flair_brookslab-1.6.4-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,568   Found link https://files.pythonhosted.org/packages/4f/24/5b988c065cacb0e847fb5ce78fa4d9e4dc5b4690503f0c9a775833f87935/flair-brookslab-1.7.0.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.7.0
2023-06-13T19:56:35,569   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/b0/ea/b0ce91294e1ad8c55189b99223a99ab8fc75982920a69e8ee7e8dd1ab4ea/flair_brookslab-1.7.0-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,570   Found link https://files.pythonhosted.org/packages/a3/8c/df1053b9dd6d10f61e34c765e87c3cb46def2c9626d62c30b0ef10c9a8ee/flair-brookslab-2.0.0.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 2.0.0
2023-06-13T19:56:35,572   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/16/6b/0f5f73acb22e396e0abc6368600449063f78a10391aedf9012d6b2686907/flair_brookslab-2.0.0-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,573 Fetching project page and analyzing links: https://www.piwheels.org/simple/flair-brookslab/
2023-06-13T19:56:35,573 Getting page https://www.piwheels.org/simple/flair-brookslab/
2023-06-13T19:56:35,576 Found index url https://www.piwheels.org/simple/
2023-06-13T19:56:35,827 Fetched page https://www.piwheels.org/simple/flair-brookslab/ as text/html
2023-06-13T19:56:35,833   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.7.0-py3-none-any.whl#sha256=6fef0081533686078cec1e8217d70a0b832ec37dc569bd282e3415ba719699c0 (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,834   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.4-py3-none-any.whl#sha256=70c52a55889c0e314949b483a05b04eeacce9a30cd8819175f8089e4960e6244 (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,835   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.3-py3-none-any.whl#sha256=033bd98a939da5bca984cc83ee597e212bd4c7f5b45aa28b56da96a92dc8f5a9 (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,835   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.2-py3-none-any.whl#sha256=dd40880a5dbef604b4ce4da671e02ab6ec1fa287a6d16f3edba1afb16c489b1a (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,836   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.1-py3-none-any.whl#sha256=63b007d0dce4210fd98049ce9930ab7a1fc691598b4e4ab3b1a9342ae365c7ec (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,836   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.0-py3-none-any.whl#sha256=42ffc8ce342e04c7e8a51c1ec41186e9142440e459349cd7fd4a9b7b42098b70 (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2023-06-13T19:56:35,837 Skipping link: not a file: https://www.piwheels.org/simple/flair-brookslab/
2023-06-13T19:56:35,837 Skipping link: not a file: https://pypi.org/simple/flair-brookslab/
2023-06-13T19:56:35,872 Given no hashes to check 1 links for project 'flair-brookslab': discarding no candidates
2023-06-13T19:56:35,904 Collecting flair-brookslab==2.0.0
2023-06-13T19:56:35,909   Created temporary directory: /tmp/pip-unpack-9ublvjdu
2023-06-13T19:56:36,090   Downloading flair-brookslab-2.0.0.tar.gz (97 kB)
2023-06-13T19:56:36,409   Added flair-brookslab==2.0.0 from https://files.pythonhosted.org/packages/a3/8c/df1053b9dd6d10f61e34c765e87c3cb46def2c9626d62c30b0ef10c9a8ee/flair-brookslab-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-4gufs8in'
2023-06-13T19:56:36,416   Created temporary directory: /tmp/pip-build-env-10jvh2_g
2023-06-13T19:56:36,438   Installing build dependencies: started
2023-06-13T19:56:36,440   Running command pip subprocess to install build dependencies
2023-06-13T19:56:39,185   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-06-13T19:56:39,957   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-13T19:56:43,899   Collecting setuptools>=42
2023-06-13T19:56:44,185     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB)
2023-06-13T19:56:48,940   Installing collected packages: setuptools
2023-06-13T19:56:53,222   Successfully installed setuptools-67.8.0
2023-06-13T19:56:53,659   Installing build dependencies: finished with status 'done'
2023-06-13T19:56:53,670   Getting requirements to build wheel: started
2023-06-13T19:56:53,673   Running command Getting requirements to build wheel
2023-06-13T19:56:55,161   running egg_info
2023-06-13T19:56:55,170   writing src/flair_brookslab.egg-info/PKG-INFO
2023-06-13T19:56:55,174   writing dependency_links to src/flair_brookslab.egg-info/dependency_links.txt
2023-06-13T19:56:55,179   writing entry points to src/flair_brookslab.egg-info/entry_points.txt
2023-06-13T19:56:55,182   writing requirements to src/flair_brookslab.egg-info/requires.txt
2023-06-13T19:56:55,184   writing top-level names to src/flair_brookslab.egg-info/top_level.txt
2023-06-13T19:56:55,253   reading manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2023-06-13T19:56:55,259   adding license file 'LICENSE.txt'
2023-06-13T19:56:55,270   writing manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2023-06-13T19:56:55,387   Getting requirements to build wheel: finished with status 'done'
2023-06-13T19:56:55,412   Installing backend dependencies: started
2023-06-13T19:56:55,415   Running command pip subprocess to install backend dependencies
2023-06-13T19:56:58,166   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-06-13T19:56:58,927   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-13T19:56:59,802   Collecting wheel
2023-06-13T19:56:59,840     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-06-13T19:57:03,743   Installing collected packages: wheel
2023-06-13T19:57:04,185     Creating /tmp/pip-build-env-10jvh2_g/normal/bin
2023-06-13T19:57:04,189     changing mode of /tmp/pip-build-env-10jvh2_g/normal/bin/wheel to 755
2023-06-13T19:57:04,215   Successfully installed wheel-0.40.0
2023-06-13T19:57:04,590   Installing backend dependencies: finished with status 'done'
2023-06-13T19:57:04,595   Created temporary directory: /tmp/pip-modern-metadata-33cg3all
2023-06-13T19:57:04,602   Preparing metadata (pyproject.toml): started
2023-06-13T19:57:04,604   Running command Preparing metadata (pyproject.toml)
2023-06-13T19:57:05,939   running dist_info
2023-06-13T19:57:05,983   creating /tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info
2023-06-13T19:57:05,993   writing /tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info/PKG-INFO
2023-06-13T19:57:05,997   writing dependency_links to /tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info/dependency_links.txt
2023-06-13T19:57:06,002   writing entry points to /tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info/entry_points.txt
2023-06-13T19:57:06,005   writing requirements to /tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info/requires.txt
2023-06-13T19:57:06,007   writing top-level names to /tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info/top_level.txt
2023-06-13T19:57:06,010   writing manifest file '/tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info/SOURCES.txt'
2023-06-13T19:57:06,087   reading manifest file '/tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info/SOURCES.txt'
2023-06-13T19:57:06,092   adding license file 'LICENSE.txt'
2023-06-13T19:57:06,100   writing manifest file '/tmp/pip-modern-metadata-33cg3all/flair_brookslab.egg-info/SOURCES.txt'
2023-06-13T19:57:06,103   creating '/tmp/pip-modern-metadata-33cg3all/flair_brookslab-2.0.0.dist-info'
2023-06-13T19:57:06,413   Preparing metadata (pyproject.toml): finished with status 'done'
2023-06-13T19:57:06,428   Source in /tmp/pip-wheel-9pflbkar/flair-brookslab_ffa3317a69fe4b44891fcee9aff7fb9f has version 2.0.0, which satisfies requirement flair-brookslab==2.0.0 from https://files.pythonhosted.org/packages/a3/8c/df1053b9dd6d10f61e34c765e87c3cb46def2c9626d62c30b0ef10c9a8ee/flair-brookslab-2.0.0.tar.gz
2023-06-13T19:57:06,430   Removed flair-brookslab==2.0.0 from https://files.pythonhosted.org/packages/a3/8c/df1053b9dd6d10f61e34c765e87c3cb46def2c9626d62c30b0ef10c9a8ee/flair-brookslab-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-4gufs8in'
2023-06-13T19:57:06,446 Created temporary directory: /tmp/pip-unpack-ks775ijx
2023-06-13T19:57:06,447 Building wheels for collected packages: flair-brookslab
2023-06-13T19:57:06,456   Created temporary directory: /tmp/pip-wheel-y5wulk5d
2023-06-13T19:57:06,457   Destination directory: /tmp/pip-wheel-y5wulk5d
2023-06-13T19:57:06,462   Building wheel for flair-brookslab (pyproject.toml): started
2023-06-13T19:57:06,464   Running command Building wheel for flair-brookslab (pyproject.toml)
2023-06-13T19:57:07,834   running bdist_wheel
2023-06-13T19:57:07,906   running build
2023-06-13T19:57:07,907   running build_py
2023-06-13T19:57:07,927   creating build
2023-06-13T19:57:07,927   creating build/lib
2023-06-13T19:57:07,929   creating build/lib/flair
2023-06-13T19:57:07,931   copying src/flair/counts_to_tpm.py -> build/lib/flair
2023-06-13T19:57:07,936   copying src/flair/ssCorrect.py -> build/lib/flair
2023-06-13T19:57:07,940   copying src/flair/filter_collapsed_isoforms.py -> build/lib/flair
2023-06-13T19:57:07,944   copying src/flair/call_diffsplice_events.py -> build/lib/flair
2023-06-13T19:57:07,948   copying src/flair/select_from_bed.py -> build/lib/flair
2023-06-13T19:57:07,952   copying src/flair/flair.py -> build/lib/flair
2023-06-13T19:57:07,958   copying src/flair/ssPrep.py -> build/lib/flair
2023-06-13T19:57:07,962   copying src/flair/collapse_isoforms_precise.py -> build/lib/flair
2023-06-13T19:57:07,967   copying src/flair/get_phase_sets.py -> build/lib/flair
2023-06-13T19:57:07,971   copying src/flair/runDU.py -> build/lib/flair
2023-06-13T19:57:07,975   copying src/flair/count_sam_transcripts.py -> build/lib/flair
2023-06-13T19:57:07,980   copying src/flair/bed_to_gtf.py -> build/lib/flair
2023-06-13T19:57:07,984   copying src/flair/runDS.py -> build/lib/flair
2023-06-13T19:57:07,988   copying src/flair/gtf_to_bed.py -> build/lib/flair
2023-06-13T19:57:07,992   copying src/flair/match_counts.py -> build/lib/flair
2023-06-13T19:57:07,996   copying src/flair/__init__.py -> build/lib/flair
2023-06-13T19:57:07,999   copying src/flair/consolidate_isoforms.py -> build/lib/flair
2023-06-13T19:57:08,003   copying src/flair/identify_gene_isoform.py -> build/lib/flair
2023-06-13T19:57:08,008   copying src/flair/deFLAIR.py -> build/lib/flair
2023-06-13T19:57:08,013   copying src/flair/runDE.py -> build/lib/flair
2023-06-13T19:57:08,018   copying src/flair/bed_to_sequence.py -> build/lib/flair
2023-06-13T19:57:08,022   copying src/flair/es_as.py -> build/lib/flair
2023-06-13T19:57:08,027   copying src/flair/es_as_inc_excl_to_counts.py -> build/lib/flair
2023-06-13T19:57:08,031   copying src/flair/bam2Bed12.py -> build/lib/flair
2023-06-13T19:57:08,036   copying src/flair/pull_starts.py -> build/lib/flair
2023-06-13T19:57:08,040   copying src/flair/subset_unassigned_reads.py -> build/lib/flair
2023-06-13T19:57:08,044   copying src/flair/filter_collapsed_isoforms_from_annotation.py -> build/lib/flair
2023-06-13T19:57:08,049   copying src/flair/filter_isoforms_by_proportion_of_gene_expr.py -> build/lib/flair
2023-06-13T19:57:08,052   copying src/flair/samJuncs.py -> build/lib/flair
2023-06-13T19:57:08,061   running build_scripts
2023-06-13T19:57:08,063   creating build/scripts-3.7
2023-06-13T19:57:08,066   copying and adjusting bin/assign_variants_to_transcripts -> build/scripts-3.7
2023-06-13T19:57:08,071   copying and adjusting bin/junctions_from_sam -> build/scripts-3.7
2023-06-13T19:57:08,079   copying and adjusting bin/mark_intron_retention -> build/scripts-3.7
2023-06-13T19:57:08,082   copying and adjusting bin/mark_productivity -> build/scripts-3.7
2023-06-13T19:57:08,087   copying and adjusting bin/normalize_counts_matrix -> build/scripts-3.7
2023-06-13T19:57:08,091   copying and adjusting bin/bam2Bed12 -> build/scripts-3.7
2023-06-13T19:57:08,095   copying and adjusting bin/bed_to_psl -> build/scripts-3.7
2023-06-13T19:57:08,099   copying and adjusting bin/diff_iso_usage -> build/scripts-3.7
2023-06-13T19:57:08,102   copying and adjusting bin/diffsplice_fishers_exact -> build/scripts-3.7
2023-06-13T19:57:08,105   copying and adjusting bin/plot_isoform_usage -> build/scripts-3.7
2023-06-13T19:57:08,109   copying and adjusting bin/predictProductivity -> build/scripts-3.7
2023-06-13T19:57:08,114   copying and adjusting bin/psl_to_bed -> build/scripts-3.7
2023-06-13T19:57:08,117   copying and adjusting bin/sam_to_map -> build/scripts-3.7
2023-06-13T19:57:08,120   copying and adjusting bin/fasta_seq_lengths -> build/scripts-3.7
2023-06-13T19:57:08,123   copying and adjusting bin/gtf_to_bed -> build/scripts-3.7
2023-06-13T19:57:08,127   copying and adjusting bin/bed_to_sequence -> build/scripts-3.7
2023-06-13T19:57:08,132   copying and adjusting bin/identify_annotated_gene -> build/scripts-3.7
2023-06-13T19:57:08,136   copying and adjusting bin/identify_gene_isoform -> build/scripts-3.7
2023-06-13T19:57:08,139   changing mode of build/scripts-3.7/assign_variants_to_transcripts from 644 to 755
2023-06-13T19:57:08,140   changing mode of build/scripts-3.7/junctions_from_sam from 644 to 755
2023-06-13T19:57:08,141   changing mode of build/scripts-3.7/mark_intron_retention from 644 to 755
2023-06-13T19:57:08,141   changing mode of build/scripts-3.7/mark_productivity from 644 to 755
2023-06-13T19:57:08,142   changing mode of build/scripts-3.7/normalize_counts_matrix from 644 to 755
2023-06-13T19:57:08,143   changing mode of build/scripts-3.7/bam2Bed12 from 644 to 755
2023-06-13T19:57:08,143   changing mode of build/scripts-3.7/bed_to_psl from 644 to 755
2023-06-13T19:57:08,144   changing mode of build/scripts-3.7/diff_iso_usage from 644 to 755
2023-06-13T19:57:08,145   changing mode of build/scripts-3.7/diffsplice_fishers_exact from 644 to 755
2023-06-13T19:57:08,146   changing mode of build/scripts-3.7/plot_isoform_usage from 644 to 755
2023-06-13T19:57:08,146   changing mode of build/scripts-3.7/predictProductivity from 644 to 755
2023-06-13T19:57:08,147   changing mode of build/scripts-3.7/psl_to_bed from 644 to 755
2023-06-13T19:57:08,148   changing mode of build/scripts-3.7/sam_to_map from 644 to 755
2023-06-13T19:57:08,148   changing mode of build/scripts-3.7/fasta_seq_lengths from 644 to 755
2023-06-13T19:57:08,149   changing mode of build/scripts-3.7/gtf_to_bed from 644 to 755
2023-06-13T19:57:08,150   changing mode of build/scripts-3.7/bed_to_sequence from 644 to 755
2023-06-13T19:57:08,150   changing mode of build/scripts-3.7/identify_annotated_gene from 644 to 755
2023-06-13T19:57:08,151   changing mode of build/scripts-3.7/identify_gene_isoform from 644 to 755
2023-06-13T19:57:08,184   installing to build/bdist.linux-armv7l/wheel
2023-06-13T19:57:08,184   running install
2023-06-13T19:57:08,245   running install_lib
2023-06-13T19:57:08,265   creating build/bdist.linux-armv7l
2023-06-13T19:57:08,266   creating build/bdist.linux-armv7l/wheel
2023-06-13T19:57:08,271   creating build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,273   copying build/lib/flair/counts_to_tpm.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,277   copying build/lib/flair/ssCorrect.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,282   copying build/lib/flair/filter_collapsed_isoforms.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,286   copying build/lib/flair/call_diffsplice_events.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,291   copying build/lib/flair/select_from_bed.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,295   copying build/lib/flair/flair.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,302   copying build/lib/flair/ssPrep.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,307   copying build/lib/flair/collapse_isoforms_precise.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,314   copying build/lib/flair/get_phase_sets.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,318   copying build/lib/flair/runDU.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,323   copying build/lib/flair/count_sam_transcripts.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,327   copying build/lib/flair/bed_to_gtf.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,331   copying build/lib/flair/runDS.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,336   copying build/lib/flair/gtf_to_bed.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,340   copying build/lib/flair/match_counts.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,343   copying build/lib/flair/__init__.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,346   copying build/lib/flair/consolidate_isoforms.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,350   copying build/lib/flair/identify_gene_isoform.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,355   copying build/lib/flair/deFLAIR.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,360   copying build/lib/flair/runDE.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,364   copying build/lib/flair/bed_to_sequence.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,369   copying build/lib/flair/es_as.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,372   copying build/lib/flair/es_as_inc_excl_to_counts.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,376   copying build/lib/flair/bam2Bed12.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,380   copying build/lib/flair/pull_starts.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,384   copying build/lib/flair/subset_unassigned_reads.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,387   copying build/lib/flair/filter_collapsed_isoforms_from_annotation.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,392   copying build/lib/flair/filter_isoforms_by_proportion_of_gene_expr.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,395   copying build/lib/flair/samJuncs.py -> build/bdist.linux-armv7l/wheel/flair
2023-06-13T19:57:08,399   running install_egg_info
2023-06-13T19:57:08,451   running egg_info
2023-06-13T19:57:08,460   writing src/flair_brookslab.egg-info/PKG-INFO
2023-06-13T19:57:08,463   writing dependency_links to src/flair_brookslab.egg-info/dependency_links.txt
2023-06-13T19:57:08,467   writing entry points to src/flair_brookslab.egg-info/entry_points.txt
2023-06-13T19:57:08,469   writing requirements to src/flair_brookslab.egg-info/requires.txt
2023-06-13T19:57:08,471   writing top-level names to src/flair_brookslab.egg-info/top_level.txt
2023-06-13T19:57:08,492   reading manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2023-06-13T19:57:08,499   adding license file 'LICENSE.txt'
2023-06-13T19:57:08,510   writing manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2023-06-13T19:57:08,513   Copying src/flair_brookslab.egg-info to build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0-py3.7.egg-info
2023-06-13T19:57:08,536   running install_scripts
2023-06-13T19:57:08,539   creating build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data
2023-06-13T19:57:08,540   creating build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,542   copying build/scripts-3.7/bed_to_sequence -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,548   copying build/scripts-3.7/predictProductivity -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,552   copying build/scripts-3.7/psl_to_bed -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,556   copying build/scripts-3.7/diff_iso_usage -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,560   copying build/scripts-3.7/mark_productivity -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,564   copying build/scripts-3.7/identify_annotated_gene -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,568   copying build/scripts-3.7/fasta_seq_lengths -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,572   copying build/scripts-3.7/bam2Bed12 -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,576   copying build/scripts-3.7/mark_intron_retention -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,580   copying build/scripts-3.7/identify_gene_isoform -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,585   copying build/scripts-3.7/plot_isoform_usage -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,590   copying build/scripts-3.7/diffsplice_fishers_exact -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,594   copying build/scripts-3.7/sam_to_map -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,597   copying build/scripts-3.7/assign_variants_to_transcripts -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,602   copying build/scripts-3.7/bed_to_psl -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,606   copying build/scripts-3.7/gtf_to_bed -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,610   copying build/scripts-3.7/junctions_from_sam -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,616   copying build/scripts-3.7/normalize_counts_matrix -> build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts
2023-06-13T19:57:08,619   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/bed_to_sequence to 755
2023-06-13T19:57:08,620   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/predictProductivity to 755
2023-06-13T19:57:08,621   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/psl_to_bed to 755
2023-06-13T19:57:08,621   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/diff_iso_usage to 755
2023-06-13T19:57:08,622   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/mark_productivity to 755
2023-06-13T19:57:08,623   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/identify_annotated_gene to 755
2023-06-13T19:57:08,623   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/fasta_seq_lengths to 755
2023-06-13T19:57:08,624   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/bam2Bed12 to 755
2023-06-13T19:57:08,625   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/mark_intron_retention to 755
2023-06-13T19:57:08,626   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/identify_gene_isoform to 755
2023-06-13T19:57:08,627   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/plot_isoform_usage to 755
2023-06-13T19:57:08,627   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/diffsplice_fishers_exact to 755
2023-06-13T19:57:08,628   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/sam_to_map to 755
2023-06-13T19:57:08,629   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/assign_variants_to_transcripts to 755
2023-06-13T19:57:08,630   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/bed_to_psl to 755
2023-06-13T19:57:08,630   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/gtf_to_bed to 755
2023-06-13T19:57:08,631   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/junctions_from_sam to 755
2023-06-13T19:57:08,632   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.data/scripts/normalize_counts_matrix to 755
2023-06-13T19:57:08,668   creating build/bdist.linux-armv7l/wheel/flair_brookslab-2.0.0.dist-info/WHEEL
2023-06-13T19:57:08,673   creating '/tmp/pip-wheel-y5wulk5d/.tmp-i9t_lu3s/flair_brookslab-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-06-13T19:57:08,678   adding 'flair/__init__.py'
2023-06-13T19:57:08,682   adding 'flair/bam2Bed12.py'
2023-06-13T19:57:08,685   adding 'flair/bed_to_gtf.py'
2023-06-13T19:57:08,690   adding 'flair/bed_to_sequence.py'
2023-06-13T19:57:08,693   adding 'flair/call_diffsplice_events.py'
2023-06-13T19:57:08,702   adding 'flair/collapse_isoforms_precise.py'
2023-06-13T19:57:08,706   adding 'flair/consolidate_isoforms.py'
2023-06-13T19:57:08,712   adding 'flair/count_sam_transcripts.py'
2023-06-13T19:57:08,714   adding 'flair/counts_to_tpm.py'
2023-06-13T19:57:08,719   adding 'flair/deFLAIR.py'
2023-06-13T19:57:08,723   adding 'flair/es_as.py'
2023-06-13T19:57:08,725   adding 'flair/es_as_inc_excl_to_counts.py'
2023-06-13T19:57:08,729   adding 'flair/filter_collapsed_isoforms.py'
2023-06-13T19:57:08,734   adding 'flair/filter_collapsed_isoforms_from_annotation.py'
2023-06-13T19:57:08,737   adding 'flair/filter_isoforms_by_proportion_of_gene_expr.py'
2023-06-13T19:57:08,751   adding 'flair/flair.py'
2023-06-13T19:57:08,756   adding 'flair/get_phase_sets.py'
2023-06-13T19:57:08,759   adding 'flair/gtf_to_bed.py'
2023-06-13T19:57:08,763   adding 'flair/identify_gene_isoform.py'
2023-06-13T19:57:08,766   adding 'flair/match_counts.py'
2023-06-13T19:57:08,769   adding 'flair/pull_starts.py'
2023-06-13T19:57:08,773   adding 'flair/runDE.py'
2023-06-13T19:57:08,778   adding 'flair/runDS.py'
2023-06-13T19:57:08,781   adding 'flair/runDU.py'
2023-06-13T19:57:08,785   adding 'flair/samJuncs.py'
2023-06-13T19:57:08,788   adding 'flair/select_from_bed.py'
2023-06-13T19:57:08,793   adding 'flair/ssCorrect.py'
2023-06-13T19:57:08,799   adding 'flair/ssPrep.py'
2023-06-13T19:57:08,802   adding 'flair/subset_unassigned_reads.py'
2023-06-13T19:57:08,808   adding 'flair_brookslab-2.0.0.data/scripts/assign_variants_to_transcripts'
2023-06-13T19:57:08,812   adding 'flair_brookslab-2.0.0.data/scripts/bam2Bed12'
2023-06-13T19:57:08,814   adding 'flair_brookslab-2.0.0.data/scripts/bed_to_psl'
2023-06-13T19:57:08,818   adding 'flair_brookslab-2.0.0.data/scripts/bed_to_sequence'
2023-06-13T19:57:08,821   adding 'flair_brookslab-2.0.0.data/scripts/diff_iso_usage'
2023-06-13T19:57:08,824   adding 'flair_brookslab-2.0.0.data/scripts/diffsplice_fishers_exact'
2023-06-13T19:57:08,827   adding 'flair_brookslab-2.0.0.data/scripts/fasta_seq_lengths'
2023-06-13T19:57:08,830   adding 'flair_brookslab-2.0.0.data/scripts/gtf_to_bed'
2023-06-13T19:57:08,833   adding 'flair_brookslab-2.0.0.data/scripts/identify_annotated_gene'
2023-06-13T19:57:08,838   adding 'flair_brookslab-2.0.0.data/scripts/identify_gene_isoform'
2023-06-13T19:57:08,846   adding 'flair_brookslab-2.0.0.data/scripts/junctions_from_sam'
2023-06-13T19:57:08,850   adding 'flair_brookslab-2.0.0.data/scripts/mark_intron_retention'
2023-06-13T19:57:08,853   adding 'flair_brookslab-2.0.0.data/scripts/mark_productivity'
2023-06-13T19:57:08,856   adding 'flair_brookslab-2.0.0.data/scripts/normalize_counts_matrix'
2023-06-13T19:57:08,861   adding 'flair_brookslab-2.0.0.data/scripts/plot_isoform_usage'
2023-06-13T19:57:08,867   adding 'flair_brookslab-2.0.0.data/scripts/predictProductivity'
2023-06-13T19:57:08,869   adding 'flair_brookslab-2.0.0.data/scripts/psl_to_bed'
2023-06-13T19:57:08,872   adding 'flair_brookslab-2.0.0.data/scripts/sam_to_map'
2023-06-13T19:57:08,877   adding 'flair_brookslab-2.0.0.dist-info/LICENSE.txt'
2023-06-13T19:57:08,879   adding 'flair_brookslab-2.0.0.dist-info/METADATA'
2023-06-13T19:57:08,882   adding 'flair_brookslab-2.0.0.dist-info/WHEEL'
2023-06-13T19:57:08,883   adding 'flair_brookslab-2.0.0.dist-info/entry_points.txt'
2023-06-13T19:57:08,885   adding 'flair_brookslab-2.0.0.dist-info/top_level.txt'
2023-06-13T19:57:08,889   adding 'flair_brookslab-2.0.0.dist-info/RECORD'
2023-06-13T19:57:08,896   removing build/bdist.linux-armv7l/wheel
2023-06-13T19:57:09,061   Building wheel for flair-brookslab (pyproject.toml): finished with status 'done'
2023-06-13T19:57:09,080   Created wheel for flair-brookslab: filename=flair_brookslab-2.0.0-py3-none-any.whl size=121919 sha256=5e4e72be4d06ca1330768353dc7529e56268c6b09d1c69076b22c3c7c3735b51
2023-06-13T19:57:09,082   Stored in directory: /tmp/pip-ephem-wheel-cache-jxsuotbk/wheels/2a/72/44/878cefd20319bd7aa05b8b2fb6e9c4c0fddef3fde2f4a51b8a
2023-06-13T19:57:09,112 Successfully built flair-brookslab
2023-06-13T19:57:09,130 Removed build tracker: '/tmp/pip-build-tracker-4gufs8in'