2023-06-14T10:23:32,155 Created temporary directory: /tmp/pip-build-tracker-ogoysr4a 2023-06-14T10:23:32,158 Initialized build tracking at /tmp/pip-build-tracker-ogoysr4a 2023-06-14T10:23:32,159 Created build tracker: /tmp/pip-build-tracker-ogoysr4a 2023-06-14T10:23:32,159 Entered build tracker: /tmp/pip-build-tracker-ogoysr4a 2023-06-14T10:23:32,160 Created temporary directory: /tmp/pip-wheel-32ljv0oz 2023-06-14T10:23:32,169 Created temporary directory: /tmp/pip-ephem-wheel-cache-n7avyas5 2023-06-14T10:23:32,221 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-14T10:23:32,229 2 location(s) to search for versions of nanomonsv: 2023-06-14T10:23:32,229 * https://pypi.org/simple/nanomonsv/ 2023-06-14T10:23:32,229 * https://www.piwheels.org/simple/nanomonsv/ 2023-06-14T10:23:32,230 Fetching project page and analyzing links: https://pypi.org/simple/nanomonsv/ 2023-06-14T10:23:32,231 Getting page https://pypi.org/simple/nanomonsv/ 2023-06-14T10:23:32,235 Found index url https://pypi.org/simple/ 2023-06-14T10:23:32,489 Fetched page https://pypi.org/simple/nanomonsv/ as application/vnd.pypi.simple.v1+json 2023-06-14T10:23:32,502 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/86/c2/7875348ad082d536efc388fb6fac2e6cc8860da5a4df7226646e31360f18/nanomonsv-0.2.0b1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,502 Found link https://files.pythonhosted.org/packages/60/2f/6a86517466677525216473caa779a32411d0cfdf993a98db1f78d06994e5/nanomonsv-0.2.0b1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b1 2023-06-14T10:23:32,503 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/ac/1d/e136a4f2c99217dc97c964ed57f0e5293a4357dc63861491db2ddad25e2a/nanomonsv-0.2.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,504 Found link https://files.pythonhosted.org/packages/18/6c/eefa4e71663b56b41fcc686be2661022da9570820d4b158e3c00666e608b/nanomonsv-0.2.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b2 2023-06-14T10:23:32,504 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/43/d0/2f35010f5238ee752950d2045d4272eb0586c4a9bd1d4edd0976cd743b1d/nanomonsv-0.2.0b3-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,505 Found link https://files.pythonhosted.org/packages/3a/b2/24335e5cac284d0b23fe89d01c134f88c2728ea22aa318e6c3e14fd5923a/nanomonsv-0.2.0b3.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b3 2023-06-14T10:23:32,506 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/98/c8/56e1b52cb06b80fee5343f236287736108317813f030eba3dcf93e221ff9/nanomonsv-0.2.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,506 Found link https://files.pythonhosted.org/packages/6a/0a/8ca5cd1f3cffbee8f9351d29868b279589b045615586c8ba34978261ee89/nanomonsv-0.2.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0 2023-06-14T10:23:32,507 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/c6/20/5e322748ed7a6385b77d806086968503631349583a804f894bc163618bc7/nanomonsv-0.3.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,508 Found link https://files.pythonhosted.org/packages/e6/c3/8a109548e162a81c53ad13a14ace41560d56b09af751065db7c6f3d5ae91/nanomonsv-0.3.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.3.0 2023-06-14T10:23:32,508 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/fc/5c/9b0a333fa811a928e889de64211ee16e94444be4c5a65486e892e28745a6/nanomonsv-0.4.0b1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,509 Found link https://files.pythonhosted.org/packages/b0/cc/11a5284b555de40a6b8434cb0e376d512ce99908a2cde3b1291691f34700/nanomonsv-0.4.0b1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0b1 2023-06-14T10:23:32,509 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/94/01/b058a48c94ef25fa011a5c0a08b09d210b83b4927820395f546d29d35bf6/nanomonsv-0.4.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,510 Found link https://files.pythonhosted.org/packages/33/31/bfa9a016b29480dc07accf15d2bfb1ccc846c442680e872f97094de58305/nanomonsv-0.4.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0b2 2023-06-14T10:23:32,511 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/e7/66/c8bbf6feaf08a3ede4a0e56aafccb07a145741a9df4f5f3bbfbca9717a45/nanomonsv-0.4.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,511 Found link https://files.pythonhosted.org/packages/f4/da/179916ab642904fddc77eee57387c0b5df3c99b6061f2ac7f797ffd212d3/nanomonsv-0.4.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0 2023-06-14T10:23:32,512 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/98/57/63fdd2b1aabeef1963bd3d7c9275d2f07c483ce0ca39a570c86eec02975c/nanomonsv-0.5.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,512 Found link https://files.pythonhosted.org/packages/09/67/cc66666ed48a2034c5b56f9cf7e0a66deac7ad90dfec88deb42d07eb7f85/nanomonsv-0.5.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.0b2 2023-06-14T10:23:32,513 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/07/87/b26f1ff2e850ca19ea236e6f61bdcd2476b34f3cef50d710945ffa454d66/nanomonsv-0.5.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,514 Found link https://files.pythonhosted.org/packages/25/cc/e7730b3c34d262d00eabdefd2c5fb4f7fe189eb308fd8986a69c1975d919/nanomonsv-0.5.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.0 2023-06-14T10:23:32,514 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/04/52/9613a8824bad6ecd8781f166b955ca208201c78de9714887976d9ef9000c/nanomonsv-0.5.1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,515 Found link https://files.pythonhosted.org/packages/a4/04/1136089512a8050178b741ea64c910f19fed3ed06035d7058434b4503bf1/nanomonsv-0.5.1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.1 2023-06-14T10:23:32,515 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/a5/f5/d1b42c1b096249dad8a9eaa02957c56327a77f8dda332c4087759f270851/nanomonsv-0.6.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2023-06-14T10:23:32,516 Found link https://files.pythonhosted.org/packages/96/8c/6525a958c684b50ffcfbe6a23a256a84af3bc2f0149c44350905adb96940/nanomonsv-0.6.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.6.0 2023-06-14T10:23:32,517 Fetching project page and analyzing links: https://www.piwheels.org/simple/nanomonsv/ 2023-06-14T10:23:32,518 Getting page https://www.piwheels.org/simple/nanomonsv/ 2023-06-14T10:23:32,520 Found index url https://www.piwheels.org/simple/ 2023-06-14T10:23:32,741 Fetched page https://www.piwheels.org/simple/nanomonsv/ as text/html 2023-06-14T10:23:32,751 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.1-py3-none-any.whl#sha256=2b59c98330574680dcf18680d624015035dcb796c50eea658615f645782c2584 (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,752 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.0-py3-none-any.whl#sha256=dfc6bd7c2b7944d8f12a46e535e89bd37c927a5203dd44cd8f82d70aca9b82b2 (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,753 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.0b2-py3-none-any.whl#sha256=8e5a4495ff5e3a8d7c9bd6e17a2caf86d12c52817b420176aae07ecb79fba651 (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,753 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0-py3-none-any.whl#sha256=9242ee898c9166b7b7b52e49af892bb4b614ce8be78f838952217b90b0733363 (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,754 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0b2-py3-none-any.whl#sha256=eabeb3034df7d19e5f305260f9aa5fc3b32de56ea54659ee96230124eaf34dfa (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,754 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0b1-py3-none-any.whl#sha256=a27a8be2cecb85df70b2f132954242da370eea197b1f2a4efcaecbdbe775d906 (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,755 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.3.0-py3-none-any.whl#sha256=60c30b67d806fac731eb67ed5cfb2db3abd1ea735d6fcc2f2bcb82ecd70438bd (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,755 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0-py3-none-any.whl#sha256=663ae38643f269f3a86a23453093f1e2def4a6be649c5a7459a5462e70906c2f (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,756 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b3-py3-none-any.whl#sha256=af9d6df96ad8b0c093ffa061ec387ddbc63acc9a96d6011b3fe533d0f4b93825 (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,756 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b2-py3-none-any.whl#sha256=ed523c14020f9d0a81a3dae05e1c549b41ab7caf99fa3d40f414e48d60e34745 (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,757 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b1-py3-none-any.whl#sha256=e1b3f57d8ac46982010d6fc5c74b8e1e735513a5cde24f8f658650bd1874f242 (from https://www.piwheels.org/simple/nanomonsv/) 2023-06-14T10:23:32,757 Skipping link: not a file: https://www.piwheels.org/simple/nanomonsv/ 2023-06-14T10:23:32,758 Skipping link: not a file: https://pypi.org/simple/nanomonsv/ 2023-06-14T10:23:32,792 Given no hashes to check 1 links for project 'nanomonsv': discarding no candidates 2023-06-14T10:23:32,823 Collecting nanomonsv==0.6.0 2023-06-14T10:23:32,828 Created temporary directory: /tmp/pip-unpack-n8qmzglh 2023-06-14T10:23:33,007 Downloading nanomonsv-0.6.0.tar.gz (529 kB) 2023-06-14T10:23:33,480 Added nanomonsv==0.6.0 from https://files.pythonhosted.org/packages/96/8c/6525a958c684b50ffcfbe6a23a256a84af3bc2f0149c44350905adb96940/nanomonsv-0.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-ogoysr4a' 2023-06-14T10:23:33,483 Running setup.py (path:/tmp/pip-wheel-32ljv0oz/nanomonsv_10998a8d8e844bf4b620ded461b91cd1/setup.py) egg_info for package nanomonsv 2023-06-14T10:23:33,485 Created temporary directory: /tmp/pip-pip-egg-info-eyxkt5h7 2023-06-14T10:23:33,485 Preparing metadata (setup.py): started 2023-06-14T10:23:33,488 Running command python setup.py egg_info 2023-06-14T10:23:34,963 running egg_info 2023-06-14T10:23:34,974 creating /tmp/pip-pip-egg-info-eyxkt5h7/nanomonsv.egg-info 2023-06-14T10:23:35,037 writing /tmp/pip-pip-egg-info-eyxkt5h7/nanomonsv.egg-info/PKG-INFO 2023-06-14T10:23:35,043 writing dependency_links to /tmp/pip-pip-egg-info-eyxkt5h7/nanomonsv.egg-info/dependency_links.txt 2023-06-14T10:23:35,048 writing entry points to /tmp/pip-pip-egg-info-eyxkt5h7/nanomonsv.egg-info/entry_points.txt 2023-06-14T10:23:35,052 writing top-level names to /tmp/pip-pip-egg-info-eyxkt5h7/nanomonsv.egg-info/top_level.txt 2023-06-14T10:23:35,055 writing manifest file '/tmp/pip-pip-egg-info-eyxkt5h7/nanomonsv.egg-info/SOURCES.txt' 2023-06-14T10:23:35,258 reading manifest file '/tmp/pip-pip-egg-info-eyxkt5h7/nanomonsv.egg-info/SOURCES.txt' 2023-06-14T10:23:35,262 adding license file 'LICENSE' 2023-06-14T10:23:35,269 writing manifest file '/tmp/pip-pip-egg-info-eyxkt5h7/nanomonsv.egg-info/SOURCES.txt' 2023-06-14T10:23:35,391 Preparing metadata (setup.py): finished with status 'done' 2023-06-14T10:23:35,404 Source in /tmp/pip-wheel-32ljv0oz/nanomonsv_10998a8d8e844bf4b620ded461b91cd1 has version 0.6.0, which satisfies requirement nanomonsv==0.6.0 from https://files.pythonhosted.org/packages/96/8c/6525a958c684b50ffcfbe6a23a256a84af3bc2f0149c44350905adb96940/nanomonsv-0.6.0.tar.gz 2023-06-14T10:23:35,406 Removed nanomonsv==0.6.0 from https://files.pythonhosted.org/packages/96/8c/6525a958c684b50ffcfbe6a23a256a84af3bc2f0149c44350905adb96940/nanomonsv-0.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-ogoysr4a' 2023-06-14T10:23:35,418 Created temporary directory: /tmp/pip-unpack-mn3myz4z 2023-06-14T10:23:35,419 Building wheels for collected packages: nanomonsv 2023-06-14T10:23:35,429 Created temporary directory: /tmp/pip-wheel-kotcjrtq 2023-06-14T10:23:35,430 Building wheel for nanomonsv (setup.py): started 2023-06-14T10:23:35,432 Destination directory: /tmp/pip-wheel-kotcjrtq 2023-06-14T10:23:35,432 Running command python setup.py bdist_wheel 2023-06-14T10:23:36,994 running bdist_wheel 2023-06-14T10:23:37,717 running build 2023-06-14T10:23:37,718 running build_py 2023-06-14T10:23:37,796 creating build 2023-06-14T10:23:37,797 creating build/lib 2023-06-14T10:23:37,798 creating build/lib/nanomonsv 2023-06-14T10:23:37,801 copying nanomonsv/swalign.py -> build/lib/nanomonsv 2023-06-14T10:23:37,807 copying nanomonsv/ssw_lib.py -> build/lib/nanomonsv 2023-06-14T10:23:37,812 copying nanomonsv/version.py -> build/lib/nanomonsv 2023-06-14T10:23:37,816 copying nanomonsv/identify.py -> build/lib/nanomonsv 2023-06-14T10:23:37,821 copying nanomonsv/pyssw.py -> build/lib/nanomonsv 2023-06-14T10:23:37,826 copying nanomonsv/__init__.py -> build/lib/nanomonsv 2023-06-14T10:23:37,830 copying nanomonsv/locate_bp_sbnd.py -> build/lib/nanomonsv 2023-06-14T10:23:37,833 copying nanomonsv/generate_consensus.py -> build/lib/nanomonsv 2023-06-14T10:23:37,838 copying nanomonsv/logger.py -> build/lib/nanomonsv 2023-06-14T10:23:37,842 copying nanomonsv/my_seq.py -> build/lib/nanomonsv 2023-06-14T10:23:37,845 copying nanomonsv/merge_control.py -> build/lib/nanomonsv 2023-06-14T10:23:37,850 copying nanomonsv/post_proc.py -> build/lib/nanomonsv 2023-06-14T10:23:37,855 copying nanomonsv/vcf_convert.py -> build/lib/nanomonsv 2023-06-14T10:23:37,860 copying nanomonsv/filt.py -> build/lib/nanomonsv 2023-06-14T10:23:37,866 copying nanomonsv/insert_classify.py -> build/lib/nanomonsv 2023-06-14T10:23:37,873 copying nanomonsv/count_sread_by_alignment.py -> build/lib/nanomonsv 2023-06-14T10:23:37,878 copying nanomonsv/run.py -> build/lib/nanomonsv 2023-06-14T10:23:37,883 copying nanomonsv/smith_waterman.py -> build/lib/nanomonsv 2023-06-14T10:23:37,888 copying nanomonsv/parse.py -> build/lib/nanomonsv 2023-06-14T10:23:37,894 copying nanomonsv/utils.py -> build/lib/nanomonsv 2023-06-14T10:23:37,898 copying nanomonsv/gather_support_read_seq.py -> build/lib/nanomonsv 2023-06-14T10:23:37,903 copying nanomonsv/locate_bp.py -> build/lib/nanomonsv 2023-06-14T10:23:37,907 copying nanomonsv/long_read_validate.py -> build/lib/nanomonsv 2023-06-14T10:23:37,913 copying nanomonsv/cluster.py -> build/lib/nanomonsv 2023-06-14T10:23:37,919 copying nanomonsv/cluster_sbnd.py -> build/lib/nanomonsv 2023-06-14T10:23:37,923 copying nanomonsv/arg_parser.py -> build/lib/nanomonsv 2023-06-14T10:23:37,930 creating build/lib/nanomonsv/data 2023-06-14T10:23:37,932 copying nanomonsv/data/LINE1.hg38.bed.gz -> build/lib/nanomonsv/data 2023-06-14T10:23:37,949 copying nanomonsv/data/LINE1.hg19.bed.gz -> build/lib/nanomonsv/data 2023-06-14T10:23:37,964 copying nanomonsv/data/LINE1.hg19.bed.gz.tbi -> build/lib/nanomonsv/data 2023-06-14T10:23:37,975 copying nanomonsv/data/LINE1.hg38.bed.gz.tbi -> build/lib/nanomonsv/data 2023-06-14T10:23:38,060 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-06-14T10:23:38,061 !! 2023-06-14T10:23:38,061 ******************************************************************************** 2023-06-14T10:23:38,062 Please avoid running ``setup.py`` directly. 2023-06-14T10:23:38,062 Instead, use pypa/build, pypa/installer, pypa/build or 2023-06-14T10:23:38,062 other standards-based tools. 2023-06-14T10:23:38,063 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-06-14T10:23:38,063 ******************************************************************************** 2023-06-14T10:23:38,064 !! 2023-06-14T10:23:38,064 self.initialize_options() 2023-06-14T10:23:38,125 installing to build/bdist.linux-armv7l/wheel 2023-06-14T10:23:38,126 running install 2023-06-14T10:23:38,185 running install_lib 2023-06-14T10:23:38,252 creating build/bdist.linux-armv7l 2023-06-14T10:23:38,253 creating build/bdist.linux-armv7l/wheel 2023-06-14T10:23:38,257 creating build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,259 copying build/lib/nanomonsv/swalign.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,265 copying build/lib/nanomonsv/ssw_lib.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,270 copying build/lib/nanomonsv/version.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,273 copying build/lib/nanomonsv/identify.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,279 copying build/lib/nanomonsv/pyssw.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,283 copying build/lib/nanomonsv/__init__.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,287 copying build/lib/nanomonsv/locate_bp_sbnd.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,290 copying build/lib/nanomonsv/generate_consensus.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,295 copying build/lib/nanomonsv/logger.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,299 copying build/lib/nanomonsv/my_seq.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,303 copying build/lib/nanomonsv/merge_control.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,307 copying build/lib/nanomonsv/post_proc.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,312 copying build/lib/nanomonsv/vcf_convert.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,316 copying build/lib/nanomonsv/filt.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,321 copying build/lib/nanomonsv/insert_classify.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,328 copying build/lib/nanomonsv/count_sread_by_alignment.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,333 copying build/lib/nanomonsv/run.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,340 creating build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-06-14T10:23:38,343 copying build/lib/nanomonsv/data/LINE1.hg38.bed.gz -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-06-14T10:23:38,356 copying build/lib/nanomonsv/data/LINE1.hg19.bed.gz -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-06-14T10:23:38,368 copying build/lib/nanomonsv/data/LINE1.hg19.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-06-14T10:23:38,376 copying build/lib/nanomonsv/data/LINE1.hg38.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2023-06-14T10:23:38,385 copying build/lib/nanomonsv/smith_waterman.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,390 copying build/lib/nanomonsv/parse.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,394 copying build/lib/nanomonsv/utils.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,399 copying build/lib/nanomonsv/gather_support_read_seq.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,403 copying build/lib/nanomonsv/locate_bp.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,408 copying build/lib/nanomonsv/long_read_validate.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,414 copying build/lib/nanomonsv/cluster.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,420 copying build/lib/nanomonsv/cluster_sbnd.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,424 copying build/lib/nanomonsv/arg_parser.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2023-06-14T10:23:38,429 running install_egg_info 2023-06-14T10:23:38,590 running egg_info 2023-06-14T10:23:38,653 writing nanomonsv.egg-info/PKG-INFO 2023-06-14T10:23:38,659 writing dependency_links to nanomonsv.egg-info/dependency_links.txt 2023-06-14T10:23:38,664 writing entry points to nanomonsv.egg-info/entry_points.txt 2023-06-14T10:23:38,668 writing top-level names to nanomonsv.egg-info/top_level.txt 2023-06-14T10:23:38,742 reading manifest file 'nanomonsv.egg-info/SOURCES.txt' 2023-06-14T10:23:38,749 adding license file 'LICENSE' 2023-06-14T10:23:38,758 writing manifest file 'nanomonsv.egg-info/SOURCES.txt' 2023-06-14T10:23:38,762 Copying nanomonsv.egg-info to build/bdist.linux-armv7l/wheel/nanomonsv-0.6.0-py3.7.egg-info 2023-06-14T10:23:38,784 running install_scripts 2023-06-14T10:23:38,821 creating build/bdist.linux-armv7l/wheel/nanomonsv-0.6.0.dist-info/WHEEL 2023-06-14T10:23:38,827 creating '/tmp/pip-wheel-kotcjrtq/nanomonsv-0.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-14T10:23:38,834 adding 'nanomonsv/__init__.py' 2023-06-14T10:23:38,838 adding 'nanomonsv/arg_parser.py' 2023-06-14T10:23:38,846 adding 'nanomonsv/cluster.py' 2023-06-14T10:23:38,850 adding 'nanomonsv/cluster_sbnd.py' 2023-06-14T10:23:38,856 adding 'nanomonsv/count_sread_by_alignment.py' 2023-06-14T10:23:38,861 adding 'nanomonsv/filt.py' 2023-06-14T10:23:38,865 adding 'nanomonsv/gather_support_read_seq.py' 2023-06-14T10:23:38,869 adding 'nanomonsv/generate_consensus.py' 2023-06-14T10:23:38,876 adding 'nanomonsv/identify.py' 2023-06-14T10:23:38,883 adding 'nanomonsv/insert_classify.py' 2023-06-14T10:23:38,887 adding 'nanomonsv/locate_bp.py' 2023-06-14T10:23:38,890 adding 'nanomonsv/locate_bp_sbnd.py' 2023-06-14T10:23:38,892 adding 'nanomonsv/logger.py' 2023-06-14T10:23:38,898 adding 'nanomonsv/long_read_validate.py' 2023-06-14T10:23:38,902 adding 'nanomonsv/merge_control.py' 2023-06-14T10:23:38,905 adding 'nanomonsv/my_seq.py' 2023-06-14T10:23:38,909 adding 'nanomonsv/parse.py' 2023-06-14T10:23:38,914 adding 'nanomonsv/post_proc.py' 2023-06-14T10:23:38,919 adding 'nanomonsv/pyssw.py' 2023-06-14T10:23:38,927 adding 'nanomonsv/run.py' 2023-06-14T10:23:38,931 adding 'nanomonsv/smith_waterman.py' 2023-06-14T10:23:38,935 adding 'nanomonsv/ssw_lib.py' 2023-06-14T10:23:38,942 adding 'nanomonsv/swalign.py' 2023-06-14T10:23:38,945 adding 'nanomonsv/utils.py' 2023-06-14T10:23:38,949 adding 'nanomonsv/vcf_convert.py' 2023-06-14T10:23:38,951 adding 'nanomonsv/version.py' 2023-06-14T10:23:39,001 adding 'nanomonsv/data/LINE1.hg19.bed.gz' 2023-06-14T10:23:39,028 adding 'nanomonsv/data/LINE1.hg19.bed.gz.tbi' 2023-06-14T10:23:39,078 adding 'nanomonsv/data/LINE1.hg38.bed.gz' 2023-06-14T10:23:39,105 adding 'nanomonsv/data/LINE1.hg38.bed.gz.tbi' 2023-06-14T10:23:39,124 adding 'nanomonsv-0.6.0.dist-info/LICENSE' 2023-06-14T10:23:39,130 adding 'nanomonsv-0.6.0.dist-info/METADATA' 2023-06-14T10:23:39,132 adding 'nanomonsv-0.6.0.dist-info/WHEEL' 2023-06-14T10:23:39,134 adding 'nanomonsv-0.6.0.dist-info/entry_points.txt' 2023-06-14T10:23:39,136 adding 'nanomonsv-0.6.0.dist-info/top_level.txt' 2023-06-14T10:23:39,139 adding 'nanomonsv-0.6.0.dist-info/RECORD' 2023-06-14T10:23:39,165 removing build/bdist.linux-armv7l/wheel 2023-06-14T10:23:39,338 Building wheel for nanomonsv (setup.py): finished with status 'done' 2023-06-14T10:23:39,361 Created wheel for nanomonsv: filename=nanomonsv-0.6.0-py3-none-any.whl size=533964 sha256=cb2aeaae31c3e0fedc3ede06bd8a25ea5db95b00da9ae24c4ee6197e619949a9 2023-06-14T10:23:39,363 Stored in directory: /tmp/pip-ephem-wheel-cache-n7avyas5/wheels/20/e9/2a/4490577b83f8d56708b9a71b8b75ef86cc874963243994b23d 2023-06-14T10:23:39,399 Successfully built nanomonsv 2023-06-14T10:23:39,445 Removed build tracker: '/tmp/pip-build-tracker-ogoysr4a'