2023-06-15T10:52:40,522 Created temporary directory: /tmp/pip-build-tracker-1364oq6s 2023-06-15T10:52:40,525 Initialized build tracking at /tmp/pip-build-tracker-1364oq6s 2023-06-15T10:52:40,526 Created build tracker: /tmp/pip-build-tracker-1364oq6s 2023-06-15T10:52:40,526 Entered build tracker: /tmp/pip-build-tracker-1364oq6s 2023-06-15T10:52:40,527 Created temporary directory: /tmp/pip-wheel-mrhgq08z 2023-06-15T10:52:40,536 Created temporary directory: /tmp/pip-ephem-wheel-cache-a9g2zn7l 2023-06-15T10:52:40,588 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-15T10:52:40,596 2 location(s) to search for versions of pywfa: 2023-06-15T10:52:40,596 * https://pypi.org/simple/pywfa/ 2023-06-15T10:52:40,596 * https://www.piwheels.org/simple/pywfa/ 2023-06-15T10:52:40,597 Fetching project page and analyzing links: https://pypi.org/simple/pywfa/ 2023-06-15T10:52:40,598 Getting page https://pypi.org/simple/pywfa/ 2023-06-15T10:52:40,602 Found index url https://pypi.org/simple/ 2023-06-15T10:52:40,794 Fetched page https://pypi.org/simple/pywfa/ as application/vnd.pypi.simple.v1+json 2023-06-15T10:52:40,801 Found link https://files.pythonhosted.org/packages/a2/27/edbaabe18d863b40b4d0cd143105f8d5ef889e0c58ebab5c7a5f80a41830/pywfa-0.2.5.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.5 2023-06-15T10:52:40,803 Found link https://files.pythonhosted.org/packages/0f/01/3aea5a52a6a625fb3ef0c31f516dcdb4e89ba12e21a24bd3678532f67dd2/pywfa-0.2.6.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.6 2023-06-15T10:52:40,803 Skipping link: No binaries permitted for pywfa: https://files.pythonhosted.org/packages/69/57/98c7fbf1d497771c732435d02190081514460a8d3518165d5e599ac639dc/pywfa-0.2.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:40,805 Found link https://files.pythonhosted.org/packages/44/b4/f6d5a8e853e18e6eda0358bff42f12f110003ef275b05bb19a4c34d575c7/pywfa-0.2.7.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.7 2023-06-15T10:52:40,806 Found link https://files.pythonhosted.org/packages/d5/2d/06abe85c9a4625ff663f04bf79a7236c2ff215b3a474091a98b61611aec1/pywfa-0.3.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.3.0 2023-06-15T10:52:40,808 Found link https://files.pythonhosted.org/packages/de/00/b037e1881f50f88d2a3f312a44f03d2430e8c58b3a5b81a005280a54c21a/pywfa-0.4.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.0 2023-06-15T10:52:40,809 Found link https://files.pythonhosted.org/packages/98/83/0b435c0c681ef8d9418b3d493342041189f3faf470d2dbfa384e7dd234cf/pywfa-0.4.1.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.1 2023-06-15T10:52:40,810 Found link https://files.pythonhosted.org/packages/5d/92/366a9f0a0a4b34e2650199861a377eddf7e9f24ecc5298efb81352dc7cee/pywfa-0.4.2.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.2 2023-06-15T10:52:40,812 Found link https://files.pythonhosted.org/packages/5a/90/b584ff58075d2949636d8afeee7af9c68169a8b15916d0eaab64e823b2f5/pywfa-0.5.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.5.0 2023-06-15T10:52:40,813 Found link https://files.pythonhosted.org/packages/93/40/ec1c77237515eb618ba7407d4ac954b9dd127808a303cd85b0928f8dc12a/pywfa-0.5.1.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.5.1 2023-06-15T10:52:40,814 Fetching project page and analyzing links: https://www.piwheels.org/simple/pywfa/ 2023-06-15T10:52:40,815 Getting page https://www.piwheels.org/simple/pywfa/ 2023-06-15T10:52:40,817 Found index url https://www.piwheels.org/simple/ 2023-06-15T10:52:41,037 Fetched page https://www.piwheels.org/simple/pywfa/ as text/html 2023-06-15T10:52:41,060 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.5.0-py3-none-any.whl#sha256=c0e5f639a7f88ae98af4d5c07e5b3503b46adbc5b619c671394d2438d48274c9 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,060 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.2-py3-none-any.whl#sha256=d9564e7692d318eb5fb46303238ced3000b975f8a2548b171f2f72dc5410e12a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,061 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.1-cp39-cp39-linux_armv7l.whl#sha256=e0d6f23f24de0cabda8008b67244aea7d28ffe22dbc1763e81bdfa93dc7c29e4 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,062 Skipping link: No binaries permitted for pywfa: 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https://www.piwheels.org/simple/pywfa/pywfa-0.4.0-cp39-cp39-linux_armv7l.whl#sha256=e0c72841834504d7295678419ce4b8f79b90594d2662ce233374250d343f456e (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,064 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.0-cp39-cp39-linux_armv6l.whl#sha256=e0c72841834504d7295678419ce4b8f79b90594d2662ce233374250d343f456e (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,064 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.0-cp37-cp37m-linux_armv7l.whl#sha256=713f33be74cc7a4496f80dfe03a29164283dff1ed58392b98d4b5a96e76b1896 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,065 Skipping link: No binaries permitted for pywfa: 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https://www.piwheels.org/simple/pywfa/pywfa-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=9b66e4b61f1a164767382bd5015298ec09393385e4b8d4347499e6f4949df1ef (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,067 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=9b66e4b61f1a164767382bd5015298ec09393385e4b8d4347499e6f4949df1ef (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,067 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.7-cp39-cp39-linux_armv7l.whl#sha256=4f8e40151734541a40568fbb2ed33bc1b6701c47b1ea500e6aeda45405750b38 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,068 Skipping link: No binaries permitted for pywfa: 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https://www.piwheels.org/simple/pywfa/pywfa-0.2.6-cp39-cp39-linux_armv7l.whl#sha256=25c2ae021d0c40c5b4c2002e4e94e0f7a48859772505ef4a423d1a881049b28f (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,070 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.6-cp39-cp39-linux_armv6l.whl#sha256=25c2ae021d0c40c5b4c2002e4e94e0f7a48859772505ef4a423d1a881049b28f (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,070 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.6-cp37-cp37m-linux_armv7l.whl#sha256=853686084d3af6af2ffddd3320c0f5627d6347b212a54e626900174e5d21097c (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,071 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.6-cp37-cp37m-linux_armv6l.whl#sha256=853686084d3af6af2ffddd3320c0f5627d6347b212a54e626900174e5d21097c (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,071 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp39-cp39-linux_armv7l.whl#sha256=d9c41aea18ead8981e0f0e6710c75bf07ed02642a29ec7308afe0f6a5187083a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,072 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp39-cp39-linux_armv6l.whl#sha256=d9c41aea18ead8981e0f0e6710c75bf07ed02642a29ec7308afe0f6a5187083a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,072 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp37-cp37m-linux_armv7l.whl#sha256=b39d17c222708e4ff97f3c3c659a7507d1c9141d6961659a72d6e6a00ad4cf6a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,073 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp37-cp37m-linux_armv6l.whl#sha256=b39d17c222708e4ff97f3c3c659a7507d1c9141d6961659a72d6e6a00ad4cf6a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-06-15T10:52:41,074 Skipping link: not a file: https://www.piwheels.org/simple/pywfa/ 2023-06-15T10:52:41,074 Skipping link: not a file: https://pypi.org/simple/pywfa/ 2023-06-15T10:52:41,109 Given no hashes to check 1 links for project 'pywfa': discarding no candidates 2023-06-15T10:52:41,144 Collecting pywfa==0.5.1 2023-06-15T10:52:41,149 Created temporary directory: /tmp/pip-unpack-9ekzw76u 2023-06-15T10:52:41,333 Downloading pywfa-0.5.1.tar.gz (3.5 MB) 2023-06-15T10:52:43,748 Added pywfa==0.5.1 from https://files.pythonhosted.org/packages/93/40/ec1c77237515eb618ba7407d4ac954b9dd127808a303cd85b0928f8dc12a/pywfa-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-1364oq6s' 2023-06-15T10:52:43,758 Created temporary directory: /tmp/pip-build-env-wonk7cwl 2023-06-15T10:52:43,778 Installing build dependencies: started 2023-06-15T10:52:43,780 Running command pip subprocess to install build dependencies 2023-06-15T10:52:46,497 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-06-15T10:52:47,272 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-15T10:52:51,300 Collecting setuptools>=61.0 2023-06-15T10:52:51,540 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB) 2023-06-15T10:52:54,925 Collecting cython 2023-06-15T10:52:55,416 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.35-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2023-06-15T10:53:00,611 Installing collected packages: setuptools, cython 2023-06-15T10:53:09,995 Creating /tmp/pip-build-env-wonk7cwl/overlay/bin 2023-06-15T10:53:10,001 changing mode of /tmp/pip-build-env-wonk7cwl/overlay/bin/cygdb to 755 2023-06-15T10:53:10,006 changing mode of /tmp/pip-build-env-wonk7cwl/overlay/bin/cython to 755 2023-06-15T10:53:10,011 changing mode of /tmp/pip-build-env-wonk7cwl/overlay/bin/cythonize to 755 2023-06-15T10:53:10,058 Successfully installed cython-0.29.35 setuptools-67.8.0 2023-06-15T10:53:10,591 Installing build dependencies: finished with status 'done' 2023-06-15T10:53:10,603 Getting requirements to build wheel: started 2023-06-15T10:53:10,605 Running command Getting requirements to build wheel 2023-06-15T10:53:12,490 creating tmp 2023-06-15T10:53:12,492 cc -c /tmp/tmpoukejv31.c -o tmp/tmpoukejv31.o -Wno-unused-function 2023-06-15T10:53:12,649 cc -c /tmp/tmpl5xv7aoq.c -o tmp/tmpl5xv7aoq.o -Wno-unused-result 2023-06-15T10:53:12,796 cc -c /tmp/tmpoexp2k11.c -o tmp/tmpoexp2k11.o -Wno-ignored-qualifiers 2023-06-15T10:53:12,943 cc -c /tmp/tmph3c0josd.c -o tmp/tmph3c0josd.o -Wno-deprecated-declarations 2023-06-15T10:53:13,120 rm -rf bin build lib 2023-06-15T10:53:13,164 make 2023-06-15T10:53:13,185 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib' 2023-06-15T10:53:13,225 make --directory=alignment all 2023-06-15T10:53:13,258 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:53:13,259 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine_penalties.c -o ../build/affine_penalties.o 2023-06-15T10:53:13,758 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine2p_penalties.c -o ../build/affine2p_penalties.o 2023-06-15T10:53:14,200 cc -Wall -g -fPIC -O3 -march=native -I.. -c cigar.c -o ../build/cigar.o 2023-06-15T10:53:15,841 cc -Wall -g -fPIC -O3 -march=native -I.. -c score_matrix.c -o ../build/score_matrix.o 2023-06-15T10:53:16,530 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:53:16,531 make --directory=system all 2023-06-15T10:53:16,565 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:53:16,565 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_allocator.c -o ../build/mm_allocator.o 2023-06-15T10:53:18,042 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_stack.c -o ../build/mm_stack.o 2023-06-15T10:53:18,890 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_counter.c -o ../build/profiler_counter.o 2023-06-15T10:53:19,944 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_timer.c -o ../build/profiler_timer.o 2023-06-15T10:53:20,801 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:53:20,802 make --directory=utils all 2023-06-15T10:53:20,836 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:53:20,836 cc -Wall -g -fPIC -O3 -march=native -I.. -c bitmap.c -o ../build/bitmap.o 2023-06-15T10:53:21,473 cc -Wall -g -fPIC -O3 -march=native -I.. -c commons.c -o ../build/commons.o 2023-06-15T10:53:22,022 cc -Wall -g -fPIC -O3 -march=native -I.. -c dna_text.c -o ../build/dna_text.o 2023-06-15T10:53:22,484 cc -Wall -g -fPIC -O3 -march=native -I.. -c heatmap.c -o ../build/heatmap.o 2023-06-15T10:53:23,289 cc -Wall -g -fPIC -O3 -march=native -I.. -c sequence_buffer.c -o ../build/sequence_buffer.o 2023-06-15T10:53:23,925 cc -Wall -g -fPIC -O3 -march=native -I.. -c string_padded.c -o ../build/string_padded.o 2023-06-15T10:53:24,549 cc -Wall -g -fPIC -O3 -march=native -I.. -c vector.c -o ../build/vector.o 2023-06-15T10:53:25,191 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:53:25,192 make --directory=wavefront all 2023-06-15T10:53:25,231 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:53:25,232 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_align.c -o ../build/wavefront_align.o 2023-06-15T10:53:26,413 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_aligner.c -o ../build/wavefront_aligner.o 2023-06-15T10:53:26,864 wavefront_aligner.c: In function ‘wavefront_aligner_print_status’: 2023-06-15T10:53:26,865 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:53:26,865 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-06-15T10:53:26,866 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-15T10:53:26,866 wavefront_aligner.c:473:41: note: format string is defined here 2023-06-15T10:53:26,867 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-06-15T10:53:26,867 ~~^ 2023-06-15T10:53:26,867 %llu 2023-06-15T10:53:26,868 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:53:26,869 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-06-15T10:53:26,869 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-15T10:53:26,869 wavefront_aligner.c:473:48: note: format string is defined here 2023-06-15T10:53:26,870 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-06-15T10:53:26,870 ~~^ 2023-06-15T10:53:26,870 %llu 2023-06-15T10:53:27,615 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_attributes.c -o ../build/wavefront_attributes.o 2023-06-15T10:53:28,089 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_buffer.c -o ../build/wavefront_backtrace_buffer.o 2023-06-15T10:53:28,517 wavefront_backtrace_buffer.c: In function ‘wf_backtrace_buffer_compact_marked’: 2023-06-15T10:53:28,518 wavefront_backtrace_buffer.c:521:61: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-06-15T10:53:28,518 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-06-15T10:53:28,519 ~~^ 2023-06-15T10:53:28,519 %u 2023-06-15T10:53:28,520 wavefront_backtrace_buffer.c:521:71: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-06-15T10:53:28,520 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-06-15T10:53:28,520 ~~^ 2023-06-15T10:53:28,521 %u 2023-06-15T10:53:29,590 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_offload.c -o ../build/wavefront_backtrace_offload.o 2023-06-15T10:53:30,527 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace.c -o ../build/wavefront_backtrace.o 2023-06-15T10:53:32,248 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_bialign.c -o ../build/wavefront_bialign.o 2023-06-15T10:53:33,554 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_components.c -o ../build/wavefront_components.o 2023-06-15T10:53:34,736 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine.c -o ../build/wavefront_compute_affine.o 2023-06-15T10:53:35,639 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine2p.c -o ../build/wavefront_compute_affine2p.o 2023-06-15T10:53:36,834 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_edit.c -o ../build/wavefront_compute_edit.o 2023-06-15T10:53:37,933 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_linear.c -o ../build/wavefront_compute_linear.o 2023-06-15T10:53:38,694 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute.c -o ../build/wavefront_compute.o 2023-06-15T10:53:39,963 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_debug.c -o ../build/wavefront_debug.o 2023-06-15T10:53:40,392 wavefront_debug.c: In function ‘wavefront_report_lite’: 2023-06-15T10:53:40,393 wavefront_debug.c:138:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:53:40,393 fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used)); 2023-06-15T10:53:40,393 ~~^ 2023-06-15T10:53:40,394 %llu 2023-06-15T10:53:40,395 wavefront_debug.c: In function ‘wavefront_report_verbose_begin’: 2023-06-15T10:53:40,395 wavefront_debug.c:187:52: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:53:40,396 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:53:40,396 ~~^ 2023-06-15T10:53:40,397 %llu 2023-06-15T10:53:40,397 wavefront_debug.c:187:58: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:53:40,397 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:53:40,398 ~~^ 2023-06-15T10:53:40,398 %llu 2023-06-15T10:53:40,399 wavefront_debug.c:187:64: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:53:40,399 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:53:40,400 ~~^ 2023-06-15T10:53:40,400 %llu 2023-06-15T10:53:40,401 wavefront_debug.c: In function ‘wavefront_report_verbose_end’: 2023-06-15T10:53:40,401 wavefront_debug.c:201:48: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:53:40,402 fprintf(stream,"[WFA::Debug]\tMemory.used\t%luMB\n", 2023-06-15T10:53:40,402 ~~^ 2023-06-15T10:53:40,402 %llu 2023-06-15T10:53:40,850 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_display.c -o ../build/wavefront_display.o 2023-06-15T10:53:41,965 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_extend.c -o ../build/wavefront_extend.o 2023-06-15T10:53:43,073 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_heuristic.c -o ../build/wavefront_heuristic.o 2023-06-15T10:53:44,418 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_pcigar.c -o ../build/wavefront_pcigar.o 2023-06-15T10:53:45,443 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_penalties.c -o ../build/wavefront_penalties.o 2023-06-15T10:53:46,125 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_plot.c -o ../build/wavefront_plot.o 2023-06-15T10:53:47,040 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_slab.c -o ../build/wavefront_slab.o 2023-06-15T10:53:47,944 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront.c -o ../build/wavefront.o 2023-06-15T10:53:48,681 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:53:48,681 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-06-15T10:53:48,860 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib' 2023-06-15T10:53:48,862 make: Warning: File 'build' has modification time 1.4 s in the future 2023-06-15T10:53:48,892 make --directory=alignment all 2023-06-15T10:53:48,923 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:53:48,924 make[1]: Nothing to be done for 'all'. 2023-06-15T10:53:48,924 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:53:48,926 make --directory=system all 2023-06-15T10:53:48,957 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:53:48,958 make[1]: Nothing to be done for 'all'. 2023-06-15T10:53:48,958 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:53:48,960 make --directory=utils all 2023-06-15T10:53:48,992 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:53:48,993 make[1]: Nothing to be done for 'all'. 2023-06-15T10:53:48,993 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:53:48,995 make --directory=wavefront all 2023-06-15T10:53:49,033 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:53:49,033 make[1]: Warning: File '../build/wavefront_slab.o' has modification time 0.55 s in the future 2023-06-15T10:53:49,035 make[1]: Nothing to be done for 'all'. 2023-06-15T10:53:49,035 make[1]: warning: Clock skew detected. Your build may be incomplete. 2023-06-15T10:53:49,036 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:53:49,037 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-06-15T10:53:49,208 make: warning: Clock skew detected. Your build may be incomplete. 2023-06-15T10:53:53,303 Libs ['/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib'] 2023-06-15T10:53:53,304 Library dirs ['/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib'] 2023-06-15T10:53:53,304 Include dirs ['.', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/bindings/cpp', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa'] 2023-06-15T10:53:53,305 Compiling pywfa/align.pyx because it depends on /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/Cython/Includes/libc/string.pxd. 2023-06-15T10:53:53,305 [1/1] Cythonizing pywfa/align.pyx 2023-06-15T10:53:53,795 running egg_info 2023-06-15T10:53:53,810 writing pywfa.egg-info/PKG-INFO 2023-06-15T10:53:53,815 writing dependency_links to pywfa.egg-info/dependency_links.txt 2023-06-15T10:53:53,820 writing top-level names to pywfa.egg-info/top_level.txt 2023-06-15T10:53:53,862 reading manifest file 'pywfa.egg-info/SOURCES.txt' 2023-06-15T10:53:53,892 reading manifest template 'MANIFEST.in' 2023-06-15T10:53:53,980 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-15T10:53:53,981 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-15T10:53:53,981 warning: no files found matching 'WFA2_lib' under directory 'pywfa' 2023-06-15T10:53:54,008 adding license file 'LICENSE' 2023-06-15T10:53:54,035 writing manifest file 'pywfa.egg-info/SOURCES.txt' 2023-06-15T10:53:54,370 Getting requirements to build wheel: finished with status 'done' 2023-06-15T10:53:54,400 Installing backend dependencies: started 2023-06-15T10:53:54,402 Running command pip subprocess to install backend dependencies 2023-06-15T10:53:57,287 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-06-15T10:53:58,152 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-15T10:53:59,026 Collecting wheel 2023-06-15T10:53:59,067 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-06-15T10:54:03,215 Installing collected packages: wheel 2023-06-15T10:54:03,657 Creating /tmp/pip-build-env-wonk7cwl/normal/bin 2023-06-15T10:54:03,662 changing mode of /tmp/pip-build-env-wonk7cwl/normal/bin/wheel to 755 2023-06-15T10:54:03,690 Successfully installed wheel-0.40.0 2023-06-15T10:54:04,068 Installing backend dependencies: finished with status 'done' 2023-06-15T10:54:04,074 Created temporary directory: /tmp/pip-modern-metadata-9sybnyaa 2023-06-15T10:54:04,081 Preparing metadata (pyproject.toml): started 2023-06-15T10:54:04,083 Running command Preparing metadata (pyproject.toml) 2023-06-15T10:54:05,870 cc -c /tmp/tmp4sofyrkj.c -o tmp/tmp4sofyrkj.o -Wno-unused-function 2023-06-15T10:54:06,018 cc -c /tmp/tmp1jt25xpo.c -o tmp/tmp1jt25xpo.o -Wno-unused-result 2023-06-15T10:54:06,166 cc -c /tmp/tmp46bp05dw.c -o tmp/tmp46bp05dw.o -Wno-ignored-qualifiers 2023-06-15T10:54:06,313 cc -c /tmp/tmpirv5nps_.c -o tmp/tmpirv5nps_.o -Wno-deprecated-declarations 2023-06-15T10:54:06,490 rm -rf bin build lib 2023-06-15T10:54:06,536 make 2023-06-15T10:54:06,555 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib' 2023-06-15T10:54:06,584 make --directory=alignment all 2023-06-15T10:54:06,616 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:54:06,616 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine_penalties.c -o ../build/affine_penalties.o 2023-06-15T10:54:07,064 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine2p_penalties.c -o ../build/affine2p_penalties.o 2023-06-15T10:54:07,514 cc -Wall -g -fPIC -O3 -march=native -I.. -c cigar.c -o ../build/cigar.o 2023-06-15T10:54:09,149 cc -Wall -g -fPIC -O3 -march=native -I.. -c score_matrix.c -o ../build/score_matrix.o 2023-06-15T10:54:09,837 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:54:09,838 make --directory=system all 2023-06-15T10:54:09,869 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:54:09,869 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_allocator.c -o ../build/mm_allocator.o 2023-06-15T10:54:11,368 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_stack.c -o ../build/mm_stack.o 2023-06-15T10:54:12,219 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_counter.c -o ../build/profiler_counter.o 2023-06-15T10:54:13,266 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_timer.c -o ../build/profiler_timer.o 2023-06-15T10:54:14,126 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:54:14,128 make --directory=utils all 2023-06-15T10:54:14,160 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:54:14,161 cc -Wall -g -fPIC -O3 -march=native -I.. -c bitmap.c -o ../build/bitmap.o 2023-06-15T10:54:14,804 cc -Wall -g -fPIC -O3 -march=native -I.. -c commons.c -o ../build/commons.o 2023-06-15T10:54:15,352 cc -Wall -g -fPIC -O3 -march=native -I.. -c dna_text.c -o ../build/dna_text.o 2023-06-15T10:54:15,819 cc -Wall -g -fPIC -O3 -march=native -I.. -c heatmap.c -o ../build/heatmap.o 2023-06-15T10:54:16,625 cc -Wall -g -fPIC -O3 -march=native -I.. -c sequence_buffer.c -o ../build/sequence_buffer.o 2023-06-15T10:54:17,261 cc -Wall -g -fPIC -O3 -march=native -I.. -c string_padded.c -o ../build/string_padded.o 2023-06-15T10:54:17,884 cc -Wall -g -fPIC -O3 -march=native -I.. -c vector.c -o ../build/vector.o 2023-06-15T10:54:18,520 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:54:18,521 make --directory=wavefront all 2023-06-15T10:54:18,552 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:54:18,552 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_align.c -o ../build/wavefront_align.o 2023-06-15T10:54:19,715 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_aligner.c -o ../build/wavefront_aligner.o 2023-06-15T10:54:20,160 wavefront_aligner.c: In function ‘wavefront_aligner_print_status’: 2023-06-15T10:54:20,160 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:54:20,161 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-06-15T10:54:20,162 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-15T10:54:20,163 wavefront_aligner.c:473:41: note: format string is defined here 2023-06-15T10:54:20,163 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-06-15T10:54:20,164 ~~^ 2023-06-15T10:54:20,164 %llu 2023-06-15T10:54:20,164 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:54:20,165 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-06-15T10:54:20,165 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-15T10:54:20,165 wavefront_aligner.c:473:48: note: format string is defined here 2023-06-15T10:54:20,166 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-06-15T10:54:20,166 ~~^ 2023-06-15T10:54:20,166 %llu 2023-06-15T10:54:20,912 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_attributes.c -o ../build/wavefront_attributes.o 2023-06-15T10:54:21,390 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_buffer.c -o ../build/wavefront_backtrace_buffer.o 2023-06-15T10:54:21,820 wavefront_backtrace_buffer.c: In function ‘wf_backtrace_buffer_compact_marked’: 2023-06-15T10:54:21,821 wavefront_backtrace_buffer.c:521:61: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-06-15T10:54:21,822 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-06-15T10:54:21,823 ~~^ 2023-06-15T10:54:21,823 %u 2023-06-15T10:54:21,824 wavefront_backtrace_buffer.c:521:71: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-06-15T10:54:21,824 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-06-15T10:54:21,824 ~~^ 2023-06-15T10:54:21,825 %u 2023-06-15T10:54:22,884 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_offload.c -o ../build/wavefront_backtrace_offload.o 2023-06-15T10:54:23,822 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace.c -o ../build/wavefront_backtrace.o 2023-06-15T10:54:25,551 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_bialign.c -o ../build/wavefront_bialign.o 2023-06-15T10:54:26,839 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_components.c -o ../build/wavefront_components.o 2023-06-15T10:54:28,017 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine.c -o ../build/wavefront_compute_affine.o 2023-06-15T10:54:28,919 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine2p.c -o ../build/wavefront_compute_affine2p.o 2023-06-15T10:54:30,120 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_edit.c -o ../build/wavefront_compute_edit.o 2023-06-15T10:54:31,234 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_linear.c -o ../build/wavefront_compute_linear.o 2023-06-15T10:54:32,012 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute.c -o ../build/wavefront_compute.o 2023-06-15T10:54:33,289 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_debug.c -o ../build/wavefront_debug.o 2023-06-15T10:54:33,717 wavefront_debug.c: In function ‘wavefront_report_lite’: 2023-06-15T10:54:33,717 wavefront_debug.c:138:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:54:33,718 fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used)); 2023-06-15T10:54:33,718 ~~^ 2023-06-15T10:54:33,719 %llu 2023-06-15T10:54:33,720 wavefront_debug.c: In function ‘wavefront_report_verbose_begin’: 2023-06-15T10:54:33,720 wavefront_debug.c:187:52: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:54:33,721 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:54:33,721 ~~^ 2023-06-15T10:54:33,721 %llu 2023-06-15T10:54:33,722 wavefront_debug.c:187:58: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:54:33,722 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:54:33,722 ~~^ 2023-06-15T10:54:33,723 %llu 2023-06-15T10:54:33,723 wavefront_debug.c:187:64: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:54:33,724 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:54:33,724 ~~^ 2023-06-15T10:54:33,725 %llu 2023-06-15T10:54:33,726 wavefront_debug.c: In function ‘wavefront_report_verbose_end’: 2023-06-15T10:54:33,726 wavefront_debug.c:201:48: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:54:33,727 fprintf(stream,"[WFA::Debug]\tMemory.used\t%luMB\n", 2023-06-15T10:54:33,727 ~~^ 2023-06-15T10:54:33,727 %llu 2023-06-15T10:54:34,181 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_display.c -o ../build/wavefront_display.o 2023-06-15T10:54:35,315 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_extend.c -o ../build/wavefront_extend.o 2023-06-15T10:54:36,431 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_heuristic.c -o ../build/wavefront_heuristic.o 2023-06-15T10:54:37,783 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_pcigar.c -o ../build/wavefront_pcigar.o 2023-06-15T10:54:38,806 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_penalties.c -o ../build/wavefront_penalties.o 2023-06-15T10:54:39,482 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_plot.c -o ../build/wavefront_plot.o 2023-06-15T10:54:40,400 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_slab.c -o ../build/wavefront_slab.o 2023-06-15T10:54:41,298 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront.c -o ../build/wavefront.o 2023-06-15T10:54:42,038 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:54:42,039 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-06-15T10:54:42,208 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib' 2023-06-15T10:54:42,209 make: Warning: File 'build' has modification time 1.4 s in the future 2023-06-15T10:54:42,240 make --directory=alignment all 2023-06-15T10:54:42,273 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:54:42,274 make[1]: Nothing to be done for 'all'. 2023-06-15T10:54:42,274 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:54:42,276 make --directory=system all 2023-06-15T10:54:42,308 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:54:42,309 make[1]: Nothing to be done for 'all'. 2023-06-15T10:54:42,310 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:54:42,312 make --directory=utils all 2023-06-15T10:54:42,345 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:54:42,346 make[1]: Nothing to be done for 'all'. 2023-06-15T10:54:42,346 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:54:42,348 make --directory=wavefront all 2023-06-15T10:54:42,383 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:54:42,384 make[1]: Warning: File '../build/wavefront_slab.o' has modification time 0.55 s in the future 2023-06-15T10:54:42,385 make[1]: Nothing to be done for 'all'. 2023-06-15T10:54:42,386 make[1]: warning: Clock skew detected. Your build may be incomplete. 2023-06-15T10:54:42,386 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:54:42,388 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-06-15T10:54:42,577 make: warning: Clock skew detected. Your build may be incomplete. 2023-06-15T10:54:43,854 Libs ['/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib'] 2023-06-15T10:54:43,854 Library dirs ['/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib'] 2023-06-15T10:54:43,855 Include dirs ['.', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/bindings/cpp', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa'] 2023-06-15T10:54:44,482 running dist_info 2023-06-15T10:54:44,496 creating /tmp/pip-modern-metadata-9sybnyaa/pywfa.egg-info 2023-06-15T10:54:44,506 writing /tmp/pip-modern-metadata-9sybnyaa/pywfa.egg-info/PKG-INFO 2023-06-15T10:54:44,511 writing dependency_links to /tmp/pip-modern-metadata-9sybnyaa/pywfa.egg-info/dependency_links.txt 2023-06-15T10:54:44,516 writing top-level names to /tmp/pip-modern-metadata-9sybnyaa/pywfa.egg-info/top_level.txt 2023-06-15T10:54:44,519 writing manifest file '/tmp/pip-modern-metadata-9sybnyaa/pywfa.egg-info/SOURCES.txt' 2023-06-15T10:54:44,561 reading manifest file '/tmp/pip-modern-metadata-9sybnyaa/pywfa.egg-info/SOURCES.txt' 2023-06-15T10:54:44,566 reading manifest template 'MANIFEST.in' 2023-06-15T10:54:44,647 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-15T10:54:44,648 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-15T10:54:44,648 warning: no files found matching 'WFA2_lib' under directory 'pywfa' 2023-06-15T10:54:44,674 adding license file 'LICENSE' 2023-06-15T10:54:44,695 writing manifest file '/tmp/pip-modern-metadata-9sybnyaa/pywfa.egg-info/SOURCES.txt' 2023-06-15T10:54:44,697 creating '/tmp/pip-modern-metadata-9sybnyaa/pywfa-0.5.1.dist-info' 2023-06-15T10:54:45,008 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-15T10:54:45,025 Source in /tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1 has version 0.5.1, which satisfies requirement pywfa==0.5.1 from https://files.pythonhosted.org/packages/93/40/ec1c77237515eb618ba7407d4ac954b9dd127808a303cd85b0928f8dc12a/pywfa-0.5.1.tar.gz 2023-06-15T10:54:45,026 Removed pywfa==0.5.1 from https://files.pythonhosted.org/packages/93/40/ec1c77237515eb618ba7407d4ac954b9dd127808a303cd85b0928f8dc12a/pywfa-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-1364oq6s' 2023-06-15T10:54:45,042 Created temporary directory: /tmp/pip-unpack-8yti16gs 2023-06-15T10:54:45,043 Building wheels for collected packages: pywfa 2023-06-15T10:54:45,052 Created temporary directory: /tmp/pip-wheel-0yik0lns 2023-06-15T10:54:45,053 Destination directory: /tmp/pip-wheel-0yik0lns 2023-06-15T10:54:45,058 Building wheel for pywfa (pyproject.toml): started 2023-06-15T10:54:45,060 Running command Building wheel for pywfa (pyproject.toml) 2023-06-15T10:54:46,855 cc -c /tmp/tmp0d5ja90k.c -o tmp/tmp0d5ja90k.o -Wno-unused-function 2023-06-15T10:54:47,004 cc -c /tmp/tmp3ojmbku8.c -o tmp/tmp3ojmbku8.o -Wno-unused-result 2023-06-15T10:54:47,154 cc -c /tmp/tmpbwzf614i.c -o tmp/tmpbwzf614i.o -Wno-ignored-qualifiers 2023-06-15T10:54:47,302 cc -c /tmp/tmpkv41klci.c -o tmp/tmpkv41klci.o -Wno-deprecated-declarations 2023-06-15T10:54:47,477 rm -rf bin build lib 2023-06-15T10:54:47,519 make 2023-06-15T10:54:47,539 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib' 2023-06-15T10:54:47,567 make --directory=alignment all 2023-06-15T10:54:47,597 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:54:47,598 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine_penalties.c -o ../build/affine_penalties.o 2023-06-15T10:54:48,042 cc -Wall -g -fPIC -O3 -march=native -I.. -c affine2p_penalties.c -o ../build/affine2p_penalties.o 2023-06-15T10:54:48,483 cc -Wall -g -fPIC -O3 -march=native -I.. -c cigar.c -o ../build/cigar.o 2023-06-15T10:54:50,132 cc -Wall -g -fPIC -O3 -march=native -I.. -c score_matrix.c -o ../build/score_matrix.o 2023-06-15T10:54:50,823 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:54:50,824 make --directory=system all 2023-06-15T10:54:50,854 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:54:50,855 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_allocator.c -o ../build/mm_allocator.o 2023-06-15T10:54:52,336 cc -Wall -g -fPIC -O3 -march=native -I.. -c mm_stack.c -o ../build/mm_stack.o 2023-06-15T10:54:53,202 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_counter.c -o ../build/profiler_counter.o 2023-06-15T10:54:54,268 cc -Wall -g -fPIC -O3 -march=native -I.. -c profiler_timer.c -o ../build/profiler_timer.o 2023-06-15T10:54:55,126 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:54:55,128 make --directory=utils all 2023-06-15T10:54:55,159 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:54:55,159 cc -Wall -g -fPIC -O3 -march=native -I.. -c bitmap.c -o ../build/bitmap.o 2023-06-15T10:54:55,807 cc -Wall -g -fPIC -O3 -march=native -I.. -c commons.c -o ../build/commons.o 2023-06-15T10:54:56,358 cc -Wall -g -fPIC -O3 -march=native -I.. -c dna_text.c -o ../build/dna_text.o 2023-06-15T10:54:56,819 cc -Wall -g -fPIC -O3 -march=native -I.. -c heatmap.c -o ../build/heatmap.o 2023-06-15T10:54:57,618 cc -Wall -g -fPIC -O3 -march=native -I.. -c sequence_buffer.c -o ../build/sequence_buffer.o 2023-06-15T10:54:58,262 cc -Wall -g -fPIC -O3 -march=native -I.. -c string_padded.c -o ../build/string_padded.o 2023-06-15T10:54:58,894 cc -Wall -g -fPIC -O3 -march=native -I.. -c vector.c -o ../build/vector.o 2023-06-15T10:54:59,522 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:54:59,523 make --directory=wavefront all 2023-06-15T10:54:59,556 make[2]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:54:59,557 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_align.c -o ../build/wavefront_align.o 2023-06-15T10:55:00,730 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_aligner.c -o ../build/wavefront_aligner.o 2023-06-15T10:55:01,172 wavefront_aligner.c: In function ‘wavefront_aligner_print_status’: 2023-06-15T10:55:01,173 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:55:01,174 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-06-15T10:55:01,175 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-15T10:55:01,175 wavefront_aligner.c:473:41: note: format string is defined here 2023-06-15T10:55:01,176 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-06-15T10:55:01,176 ~~^ 2023-06-15T10:55:01,177 %llu 2023-06-15T10:55:01,177 wavefront_aligner.c:472:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:55:01,177 "[WFA] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). " 2023-06-15T10:55:01,178 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-15T10:55:01,178 wavefront_aligner.c:473:48: note: format string is defined here 2023-06-15T10:55:01,178 "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). " 2023-06-15T10:55:01,179 ~~^ 2023-06-15T10:55:01,179 %llu 2023-06-15T10:55:01,931 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_attributes.c -o ../build/wavefront_attributes.o 2023-06-15T10:55:02,406 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_buffer.c -o ../build/wavefront_backtrace_buffer.o 2023-06-15T10:55:02,837 wavefront_backtrace_buffer.c: In function ‘wf_backtrace_buffer_compact_marked’: 2023-06-15T10:55:02,838 wavefront_backtrace_buffer.c:521:61: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-06-15T10:55:02,839 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-06-15T10:55:02,839 ~~^ 2023-06-15T10:55:02,840 %u 2023-06-15T10:55:02,840 wavefront_backtrace_buffer.c:521:71: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=] 2023-06-15T10:55:02,841 fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)", 2023-06-15T10:55:02,841 ~~^ 2023-06-15T10:55:02,842 %u 2023-06-15T10:55:03,909 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace_offload.c -o ../build/wavefront_backtrace_offload.o 2023-06-15T10:55:04,830 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_backtrace.c -o ../build/wavefront_backtrace.o 2023-06-15T10:55:06,569 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_bialign.c -o ../build/wavefront_bialign.o 2023-06-15T10:55:07,851 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_components.c -o ../build/wavefront_components.o 2023-06-15T10:55:09,033 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine.c -o ../build/wavefront_compute_affine.o 2023-06-15T10:55:09,931 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_affine2p.c -o ../build/wavefront_compute_affine2p.o 2023-06-15T10:55:11,131 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_edit.c -o ../build/wavefront_compute_edit.o 2023-06-15T10:55:12,240 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute_linear.c -o ../build/wavefront_compute_linear.o 2023-06-15T10:55:13,008 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_compute.c -o ../build/wavefront_compute.o 2023-06-15T10:55:14,264 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_debug.c -o ../build/wavefront_debug.o 2023-06-15T10:55:14,702 wavefront_debug.c: In function ‘wavefront_report_lite’: 2023-06-15T10:55:14,703 wavefront_debug.c:138:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 2023-06-15T10:55:14,703 fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used)); 2023-06-15T10:55:14,704 ~~^ 2023-06-15T10:55:14,704 %llu 2023-06-15T10:55:14,705 wavefront_debug.c: In function ‘wavefront_report_verbose_begin’: 2023-06-15T10:55:14,705 wavefront_debug.c:187:52: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:55:14,706 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:55:14,706 ~~^ 2023-06-15T10:55:14,707 %llu 2023-06-15T10:55:14,707 wavefront_debug.c:187:58: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:55:14,708 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:55:14,708 ~~^ 2023-06-15T10:55:14,709 %llu 2023-06-15T10:55:14,710 wavefront_debug.c:187:64: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:55:14,710 fprintf(stream,"[WFA::Debug]\tMemory.mode\t(%d,%luMB,%luMB,%luMB)\n", 2023-06-15T10:55:14,711 ~~^ 2023-06-15T10:55:14,711 %llu 2023-06-15T10:55:14,712 wavefront_debug.c: In function ‘wavefront_report_verbose_end’: 2023-06-15T10:55:14,712 wavefront_debug.c:201:48: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 2023-06-15T10:55:14,713 fprintf(stream,"[WFA::Debug]\tMemory.used\t%luMB\n", 2023-06-15T10:55:14,713 ~~^ 2023-06-15T10:55:14,713 %llu 2023-06-15T10:55:15,156 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_display.c -o ../build/wavefront_display.o 2023-06-15T10:55:16,259 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_extend.c -o ../build/wavefront_extend.o 2023-06-15T10:55:17,385 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_heuristic.c -o ../build/wavefront_heuristic.o 2023-06-15T10:55:18,719 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_pcigar.c -o ../build/wavefront_pcigar.o 2023-06-15T10:55:19,742 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_penalties.c -o ../build/wavefront_penalties.o 2023-06-15T10:55:20,431 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_plot.c -o ../build/wavefront_plot.o 2023-06-15T10:55:21,345 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront_slab.c -o ../build/wavefront_slab.o 2023-06-15T10:55:22,260 cc -Wall -g -fPIC -O3 -march=native -I.. -c wavefront.c -o ../build/wavefront.o 2023-06-15T10:55:22,996 make[2]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:55:22,997 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-06-15T10:55:23,156 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib' 2023-06-15T10:55:23,160 make: Warning: File 'build' has modification time 1.4 s in the future 2023-06-15T10:55:23,189 make --directory=alignment all 2023-06-15T10:55:23,219 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:55:23,220 make[1]: Nothing to be done for 'all'. 2023-06-15T10:55:23,220 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment' 2023-06-15T10:55:23,221 make --directory=system all 2023-06-15T10:55:23,252 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:55:23,253 make[1]: Nothing to be done for 'all'. 2023-06-15T10:55:23,253 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system' 2023-06-15T10:55:23,254 make --directory=utils all 2023-06-15T10:55:23,286 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:55:23,286 make[1]: Nothing to be done for 'all'. 2023-06-15T10:55:23,287 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils' 2023-06-15T10:55:23,288 make --directory=wavefront all 2023-06-15T10:55:23,324 make[1]: Entering directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:55:23,325 make[1]: Warning: File '../build/wavefront_slab.o' has modification time 0.57 s in the future 2023-06-15T10:55:23,325 make[1]: Nothing to be done for 'all'. 2023-06-15T10:55:23,326 make[1]: warning: Clock skew detected. Your build may be incomplete. 2023-06-15T10:55:23,327 make[1]: Leaving directory '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront' 2023-06-15T10:55:23,329 ar -rsc lib/libwfa.a build/*.o 2> /dev/null 2023-06-15T10:55:23,513 make: warning: Clock skew detected. Your build may be incomplete. 2023-06-15T10:55:24,783 Libs ['/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib'] 2023-06-15T10:55:24,784 Library dirs ['/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib'] 2023-06-15T10:55:24,784 Include dirs ['.', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/bindings/cpp', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment', '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa'] 2023-06-15T10:55:25,385 running bdist_wheel 2023-06-15T10:55:25,422 running build 2023-06-15T10:55:25,423 running build_py 2023-06-15T10:55:25,424 running build_ext 2023-06-15T10:55:25,429 building 'pywfa.align' extension 2023-06-15T10:55:25,430 creating build 2023-06-15T10:55:25,431 creating build/temp.linux-armv7l-cpython-37 2023-06-15T10:55:25,432 creating build/temp.linux-armv7l-cpython-37/pywfa 2023-06-15T10:55:25,435 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -I. -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1 -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/utils -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/wavefront -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/bindings/cpp -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/system -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/alignment -I/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa -I/usr/include/python3.7m -c pywfa/align.c -o build/temp.linux-armv7l-cpython-37/pywfa/align.o -Wno-unused-function -Wno-unused-result -Wno-ignored-qualifiers -Wno-deprecated-declarations 2023-06-15T10:55:59,677 creating build/lib 2023-06-15T10:55:59,678 creating build/lib/pywfa 2023-06-15T10:55:59,680 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-cpython-37/pywfa/align.o /tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib/libwfa.a -L/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib -L/usr/lib -o build/lib/pywfa/align.cpython-37m-arm-linux-gnueabihf.so 2023-06-15T10:56:24,777 copying _custom_build.py -> build/lib 2023-06-15T10:56:24,784 copying pywfa/__init__.py -> build/lib/pywfa 2023-06-15T10:56:24,789 creating build/lib/pywfa/tests 2023-06-15T10:56:24,791 copying pywfa/tests/test.py -> build/lib/pywfa/tests 2023-06-15T10:56:24,795 copying pywfa/tests/__init__.py -> build/lib/pywfa/tests 2023-06-15T10:56:24,800 running egg_info 2023-06-15T10:56:24,827 writing pywfa.egg-info/PKG-INFO 2023-06-15T10:56:24,832 writing dependency_links to pywfa.egg-info/dependency_links.txt 2023-06-15T10:56:24,835 writing top-level names to pywfa.egg-info/top_level.txt 2023-06-15T10:56:24,856 reading manifest file 'pywfa.egg-info/SOURCES.txt' 2023-06-15T10:56:24,907 reading manifest template 'MANIFEST.in' 2023-06-15T10:56:24,983 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-15T10:56:24,983 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-15T10:56:24,984 warning: no library file corresponding to '/tmp/pip-wheel-mrhgq08z/pywfa_bf2a8d5aa3e345879a13343f94c1c6c1/pywfa/WFA2_lib/lib' found (skipping) 2023-06-15T10:56:24,985 warning: no files found matching 'WFA2_lib' under directory 'pywfa' 2023-06-15T10:56:25,009 adding license file 'LICENSE' 2023-06-15T10:56:25,037 writing manifest file 'pywfa.egg-info/SOURCES.txt' 2023-06-15T10:56:25,057 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.alignment' is absent from the `packages` configuration. 2023-06-15T10:56:25,058 !! 2023-06-15T10:56:25,058 ******************************************************************************** 2023-06-15T10:56:25,059 ############################ 2023-06-15T10:56:25,059 # Package would be ignored # 2023-06-15T10:56:25,059 ############################ 2023-06-15T10:56:25,059 Python recognizes 'pywfa.WFA2_lib.alignment' as an importable package[^1], 2023-06-15T10:56:25,060 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:25,060 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:25,061 package, please make sure that 'pywfa.WFA2_lib.alignment' is explicitly added 2023-06-15T10:56:25,061 to the `packages` configuration field. 2023-06-15T10:56:25,062 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:25,062 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:25,062 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:25,063 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:25,063 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:25,064 If you don't want 'pywfa.WFA2_lib.alignment' to be distributed and are 2023-06-15T10:56:25,064 already explicitly excluding 'pywfa.WFA2_lib.alignment' via 2023-06-15T10:56:25,065 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:25,065 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:25,065 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:25,066 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:25,066 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:25,067 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:25,068 even if it does not contain any `.py` files. 2023-06-15T10:56:25,068 On the other hand, currently there is no concept of package data 2023-06-15T10:56:25,068 directory, all directories are treated like packages. 2023-06-15T10:56:25,069 ******************************************************************************** 2023-06-15T10:56:25,069 !! 2023-06-15T10:56:25,069 check.warn(importable) 2023-06-15T10:56:25,070 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.build' is absent from the `packages` configuration. 2023-06-15T10:56:25,070 !! 2023-06-15T10:56:25,071 ******************************************************************************** 2023-06-15T10:56:25,071 ############################ 2023-06-15T10:56:25,071 # Package would be ignored # 2023-06-15T10:56:25,072 ############################ 2023-06-15T10:56:25,072 Python recognizes 'pywfa.WFA2_lib.build' as an importable package[^1], 2023-06-15T10:56:25,072 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:25,073 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:25,073 package, please make sure that 'pywfa.WFA2_lib.build' is explicitly added 2023-06-15T10:56:25,073 to the `packages` configuration field. 2023-06-15T10:56:25,074 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:25,074 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:25,074 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:25,075 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:25,076 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:25,076 If you don't want 'pywfa.WFA2_lib.build' to be distributed and are 2023-06-15T10:56:25,076 already explicitly excluding 'pywfa.WFA2_lib.build' via 2023-06-15T10:56:25,077 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:25,077 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:25,077 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:25,078 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:25,079 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:25,079 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:25,080 even if it does not contain any `.py` files. 2023-06-15T10:56:25,080 On the other hand, currently there is no concept of package data 2023-06-15T10:56:25,080 directory, all directories are treated like packages. 2023-06-15T10:56:25,081 ******************************************************************************** 2023-06-15T10:56:25,081 !! 2023-06-15T10:56:25,081 check.warn(importable) 2023-06-15T10:56:25,082 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.examples' is absent from the `packages` configuration. 2023-06-15T10:56:25,082 !! 2023-06-15T10:56:25,083 ******************************************************************************** 2023-06-15T10:56:25,083 ############################ 2023-06-15T10:56:25,083 # Package would be ignored # 2023-06-15T10:56:25,083 ############################ 2023-06-15T10:56:25,084 Python recognizes 'pywfa.WFA2_lib.examples' as an importable package[^1], 2023-06-15T10:56:25,084 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:25,085 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:25,085 package, please make sure that 'pywfa.WFA2_lib.examples' is explicitly added 2023-06-15T10:56:25,085 to the `packages` configuration field. 2023-06-15T10:56:25,086 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:25,086 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:25,086 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:25,087 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:25,087 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:25,088 If you don't want 'pywfa.WFA2_lib.examples' to be distributed and are 2023-06-15T10:56:25,088 already explicitly excluding 'pywfa.WFA2_lib.examples' via 2023-06-15T10:56:25,089 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:25,089 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:25,089 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:25,090 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:25,090 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:25,091 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:25,092 even if it does not contain any `.py` files. 2023-06-15T10:56:25,092 On the other hand, currently there is no concept of package data 2023-06-15T10:56:25,092 directory, all directories are treated like packages. 2023-06-15T10:56:25,092 ******************************************************************************** 2023-06-15T10:56:25,093 !! 2023-06-15T10:56:25,093 check.warn(importable) 2023-06-15T10:56:25,094 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.img' is absent from the `packages` configuration. 2023-06-15T10:56:25,094 !! 2023-06-15T10:56:25,094 ******************************************************************************** 2023-06-15T10:56:25,095 ############################ 2023-06-15T10:56:25,095 # Package would be ignored # 2023-06-15T10:56:25,095 ############################ 2023-06-15T10:56:25,096 Python recognizes 'pywfa.WFA2_lib.img' as an importable package[^1], 2023-06-15T10:56:25,096 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:25,096 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:25,097 package, please make sure that 'pywfa.WFA2_lib.img' is explicitly added 2023-06-15T10:56:25,097 to the `packages` configuration field. 2023-06-15T10:56:25,097 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:25,098 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:25,098 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:25,099 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:25,099 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:25,100 If you don't want 'pywfa.WFA2_lib.img' to be distributed and are 2023-06-15T10:56:25,100 already explicitly excluding 'pywfa.WFA2_lib.img' via 2023-06-15T10:56:25,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:25,101 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:25,101 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:25,102 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:25,102 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:25,103 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:25,103 even if it does not contain any `.py` files. 2023-06-15T10:56:25,104 On the other hand, currently there is no concept of package data 2023-06-15T10:56:25,104 directory, all directories are treated like packages. 2023-06-15T10:56:25,104 ******************************************************************************** 2023-06-15T10:56:25,105 !! 2023-06-15T10:56:25,105 check.warn(importable) 2023-06-15T10:56:25,106 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.lib' is absent from the `packages` configuration. 2023-06-15T10:56:25,106 !! 2023-06-15T10:56:25,107 ******************************************************************************** 2023-06-15T10:56:25,108 ############################ 2023-06-15T10:56:25,109 # Package would be ignored # 2023-06-15T10:56:25,109 ############################ 2023-06-15T10:56:25,110 Python recognizes 'pywfa.WFA2_lib.lib' as an importable package[^1], 2023-06-15T10:56:25,110 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:25,111 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:25,111 package, please make sure that 'pywfa.WFA2_lib.lib' is explicitly added 2023-06-15T10:56:25,112 to the `packages` configuration field. 2023-06-15T10:56:25,113 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:25,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:25,113 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:25,114 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:25,117 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:25,120 If you don't want 'pywfa.WFA2_lib.lib' to be distributed and are 2023-06-15T10:56:25,120 already explicitly excluding 'pywfa.WFA2_lib.lib' via 2023-06-15T10:56:25,121 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:25,121 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:25,122 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:25,123 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:25,125 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:25,126 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:25,127 even if it does not contain any `.py` files. 2023-06-15T10:56:25,127 On the other hand, currently there is no concept of package data 2023-06-15T10:56:25,128 directory, all directories are treated like packages. 2023-06-15T10:56:25,128 ******************************************************************************** 2023-06-15T10:56:25,129 !! 2023-06-15T10:56:25,129 check.warn(importable) 2023-06-15T10:56:25,129 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.scripts' is absent from the `packages` configuration. 2023-06-15T10:56:25,130 !! 2023-06-15T10:56:25,130 ******************************************************************************** 2023-06-15T10:56:25,131 ############################ 2023-06-15T10:56:25,131 # Package would be ignored # 2023-06-15T10:56:25,131 ############################ 2023-06-15T10:56:25,132 Python recognizes 'pywfa.WFA2_lib.scripts' as an importable package[^1], 2023-06-15T10:56:25,132 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:25,132 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:25,133 package, please make sure that 'pywfa.WFA2_lib.scripts' is explicitly added 2023-06-15T10:56:25,133 to the `packages` configuration field. 2023-06-15T10:56:25,134 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:25,134 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:25,134 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:25,135 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:25,135 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:25,136 If you don't want 'pywfa.WFA2_lib.scripts' to be distributed and are 2023-06-15T10:56:25,136 already explicitly excluding 'pywfa.WFA2_lib.scripts' via 2023-06-15T10:56:25,146 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:25,147 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:25,148 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:25,150 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:25,157 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:25,161 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:25,161 even if it does not contain any `.py` files. 2023-06-15T10:56:25,162 On the other hand, currently there is no concept of package data 2023-06-15T10:56:25,162 directory, all directories are treated like packages. 2023-06-15T10:56:25,162 ******************************************************************************** 2023-06-15T10:56:25,163 !! 2023-06-15T10:56:25,163 check.warn(importable) 2023-06-15T10:56:25,164 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.system' is absent from the `packages` configuration. 2023-06-15T10:56:25,164 !! 2023-06-15T10:56:25,165 ******************************************************************************** 2023-06-15T10:56:25,165 ############################ 2023-06-15T10:56:25,166 # Package would be ignored # 2023-06-15T10:56:25,166 ############################ 2023-06-15T10:56:25,167 Python recognizes 'pywfa.WFA2_lib.system' as an importable package[^1], 2023-06-15T10:56:25,167 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:25,167 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:25,168 package, please make sure that 'pywfa.WFA2_lib.system' is explicitly added 2023-06-15T10:56:25,168 to the `packages` configuration field. 2023-06-15T10:56:25,169 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:25,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:25,169 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:25,170 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:25,170 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:25,171 If you don't want 'pywfa.WFA2_lib.system' to be distributed and are 2023-06-15T10:56:25,171 already explicitly excluding 'pywfa.WFA2_lib.system' via 2023-06-15T10:56:25,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:25,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:25,172 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:25,173 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:25,174 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:25,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:25,178 even if it does not contain any `.py` files. 2023-06-15T10:56:25,179 On the other hand, currently there is no concept of package data 2023-06-15T10:56:25,181 directory, all directories are treated like packages. 2023-06-15T10:56:25,183 ******************************************************************************** 2023-06-15T10:56:25,193 !! 2023-06-15T10:56:25,196 check.warn(importable) 2023-06-15T10:56:25,197 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.tools' is absent from the `packages` configuration. 2023-06-15T10:56:25,197 !! 2023-06-15T10:56:25,198 ******************************************************************************** 2023-06-15T10:56:25,198 ############################ 2023-06-15T10:56:25,198 # Package would be ignored # 2023-06-15T10:56:25,198 ############################ 2023-06-15T10:56:25,199 Python recognizes 'pywfa.WFA2_lib.tools' as an importable package[^1], 2023-06-15T10:56:25,199 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:25,200 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:25,200 package, please make sure that 'pywfa.WFA2_lib.tools' is explicitly added 2023-06-15T10:56:25,200 to the `packages` configuration field. 2023-06-15T10:56:25,201 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:25,202 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:25,202 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:25,203 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:25,204 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:25,205 If you don't want 'pywfa.WFA2_lib.tools' to be distributed and are 2023-06-15T10:56:25,205 already explicitly excluding 'pywfa.WFA2_lib.tools' via 2023-06-15T10:56:25,205 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:25,206 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:25,206 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:25,207 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:25,207 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:25,208 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:25,208 even if it does not contain any `.py` files. 2023-06-15T10:56:25,209 On the other hand, currently there is no concept of package data 2023-06-15T10:56:25,209 directory, all directories are treated like packages. 2023-06-15T10:56:25,210 ******************************************************************************** 2023-06-15T10:56:25,214 !! 2023-06-15T10:56:25,216 check.warn(importable) 2023-06-15T10:56:25,218 copying pywfa/.DS_Store -> build/lib/pywfa 2023-06-15T10:56:25,221 copying pywfa/WFA_wrap.c -> build/lib/pywfa 2023-06-15T10:56:25,222 copying pywfa/WFA_wrap.pxd -> build/lib/pywfa 2023-06-15T10:56:25,222 copying pywfa/align.c -> build/lib/pywfa 2023-06-15T10:56:25,222 copying pywfa/align.cpython-310-darwin.so -> build/lib/pywfa 2023-06-15T10:56:25,223 copying pywfa/align.cpython-39-darwin.so -> build/lib/pywfa 2023-06-15T10:56:25,225 copying pywfa/align.pxd -> build/lib/pywfa 2023-06-15T10:56:25,229 copying pywfa/align.pyx -> build/lib/pywfa 2023-06-15T10:56:25,234 copying pywfa/tests/long.fa -> build/lib/pywfa/tests 2023-06-15T10:56:25,238 copying pywfa/tests/long.reference.fa -> build/lib/pywfa/tests 2023-06-15T10:56:25,242 copying pywfa/tests/short.fa -> build/lib/pywfa/tests 2023-06-15T10:56:25,246 copying pywfa/tests/short.reference.fa -> build/lib/pywfa/tests 2023-06-15T10:56:25,251 creating build/lib/pywfa/WFA2_lib 2023-06-15T10:56:25,253 copying pywfa/WFA2_lib/.DS_Store -> build/lib/pywfa/WFA2_lib 2023-06-15T10:56:25,258 copying pywfa/WFA2_lib/.gitignore -> build/lib/pywfa/WFA2_lib 2023-06-15T10:56:25,262 copying pywfa/WFA2_lib/LICENSE -> build/lib/pywfa/WFA2_lib 2023-06-15T10:56:25,266 copying pywfa/WFA2_lib/Makefile -> build/lib/pywfa/WFA2_lib 2023-06-15T10:56:25,270 copying pywfa/WFA2_lib/README.md -> build/lib/pywfa/WFA2_lib 2023-06-15T10:56:25,277 copying pywfa/WFA2_lib/VERSION -> build/lib/pywfa/WFA2_lib 2023-06-15T10:56:25,280 creating build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,282 copying pywfa/WFA2_lib/alignment/Makefile -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,286 copying pywfa/WFA2_lib/alignment/affine2p_penalties.c -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,290 copying pywfa/WFA2_lib/alignment/affine2p_penalties.h -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,294 copying pywfa/WFA2_lib/alignment/affine_penalties.c -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,298 copying pywfa/WFA2_lib/alignment/affine_penalties.h -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,301 copying pywfa/WFA2_lib/alignment/cigar.c -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,306 copying pywfa/WFA2_lib/alignment/cigar.h -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,310 copying pywfa/WFA2_lib/alignment/linear_penalties.h -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,314 copying pywfa/WFA2_lib/alignment/score_matrix.c -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,318 copying pywfa/WFA2_lib/alignment/score_matrix.h -> build/lib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:25,322 creating build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,324 copying pywfa/WFA2_lib/build/affine2p_penalties.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,330 copying pywfa/WFA2_lib/build/affine_penalties.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,334 copying pywfa/WFA2_lib/build/bitmap.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,339 copying pywfa/WFA2_lib/build/cigar.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,345 copying pywfa/WFA2_lib/build/commons.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,350 copying pywfa/WFA2_lib/build/dna_text.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,354 copying pywfa/WFA2_lib/build/heatmap.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,359 copying pywfa/WFA2_lib/build/mm_allocator.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,365 copying pywfa/WFA2_lib/build/mm_stack.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,370 copying pywfa/WFA2_lib/build/profiler_counter.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,376 copying pywfa/WFA2_lib/build/profiler_timer.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,381 copying pywfa/WFA2_lib/build/score_matrix.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,385 copying pywfa/WFA2_lib/build/sequence_buffer.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,390 copying pywfa/WFA2_lib/build/string_padded.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,394 copying pywfa/WFA2_lib/build/vector.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,399 copying pywfa/WFA2_lib/build/wavefront.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,404 copying pywfa/WFA2_lib/build/wavefront_align.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,410 copying pywfa/WFA2_lib/build/wavefront_aligner.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,416 copying pywfa/WFA2_lib/build/wavefront_attributes.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,421 copying pywfa/WFA2_lib/build/wavefront_backtrace.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,428 copying pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,434 copying pywfa/WFA2_lib/build/wavefront_backtrace_offload.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,439 copying pywfa/WFA2_lib/build/wavefront_bialign.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,445 copying pywfa/WFA2_lib/build/wavefront_components.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,451 copying pywfa/WFA2_lib/build/wavefront_compute.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,457 copying pywfa/WFA2_lib/build/wavefront_compute_affine.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,463 copying pywfa/WFA2_lib/build/wavefront_compute_affine2p.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,468 copying pywfa/WFA2_lib/build/wavefront_compute_edit.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,474 copying pywfa/WFA2_lib/build/wavefront_compute_linear.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,479 copying pywfa/WFA2_lib/build/wavefront_debug.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,486 copying pywfa/WFA2_lib/build/wavefront_display.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,492 copying pywfa/WFA2_lib/build/wavefront_extend.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,498 copying pywfa/WFA2_lib/build/wavefront_heuristic.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,505 copying pywfa/WFA2_lib/build/wavefront_pcigar.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,510 copying pywfa/WFA2_lib/build/wavefront_penalties.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,515 copying pywfa/WFA2_lib/build/wavefront_plot.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,520 copying pywfa/WFA2_lib/build/wavefront_slab.o -> build/lib/pywfa/WFA2_lib/build 2023-06-15T10:56:25,526 creating build/lib/pywfa/WFA2_lib/examples 2023-06-15T10:56:25,527 copying pywfa/WFA2_lib/examples/Makefile -> build/lib/pywfa/WFA2_lib/examples 2023-06-15T10:56:25,532 copying pywfa/WFA2_lib/examples/README.md -> build/lib/pywfa/WFA2_lib/examples 2023-06-15T10:56:25,536 copying pywfa/WFA2_lib/examples/wfa_adapt.c -> build/lib/pywfa/WFA2_lib/examples 2023-06-15T10:56:25,539 copying pywfa/WFA2_lib/examples/wfa_basic.c -> build/lib/pywfa/WFA2_lib/examples 2023-06-15T10:56:25,543 copying pywfa/WFA2_lib/examples/wfa_bindings.cpp -> build/lib/pywfa/WFA2_lib/examples 2023-06-15T10:56:25,547 copying pywfa/WFA2_lib/examples/wfa_lambda.cpp -> build/lib/pywfa/WFA2_lib/examples 2023-06-15T10:56:25,552 copying pywfa/WFA2_lib/examples/wfa_repeated.c -> build/lib/pywfa/WFA2_lib/examples 2023-06-15T10:56:25,556 creating build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,557 copying pywfa/WFA2_lib/img/heuristics.aband.10.10.png -> build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,579 copying pywfa/WFA2_lib/img/heuristics.aband.50.50.png -> build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,605 copying pywfa/WFA2_lib/img/heuristics.band.10.10.png -> build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,627 copying pywfa/WFA2_lib/img/heuristics.band.10.150.png -> build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,653 copying pywfa/WFA2_lib/img/heuristics.none.png -> build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,683 copying pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png -> build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,713 copying pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png -> build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,747 copying pywfa/WFA2_lib/img/wfa.vs.swg.png -> build/lib/pywfa/WFA2_lib/img 2023-06-15T10:56:25,796 creating build/lib/pywfa/WFA2_lib/lib 2023-06-15T10:56:25,798 copying pywfa/WFA2_lib/lib/libwfa.a -> build/lib/pywfa/WFA2_lib/lib 2023-06-15T10:56:25,848 creating build/lib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:25,849 copying pywfa/WFA2_lib/scripts/fasta2seq.sh -> build/lib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:25,854 copying pywfa/WFA2_lib/scripts/seq2fasta.sh -> build/lib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:25,858 copying pywfa/WFA2_lib/scripts/wfa.alg.cmp.py -> build/lib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:25,863 copying pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh -> build/lib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:25,866 copying pywfa/WFA2_lib/scripts/wfa.alg.rescore.py -> build/lib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:25,872 copying pywfa/WFA2_lib/scripts/wfa2png.py -> build/lib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:25,876 creating build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,878 copying pywfa/WFA2_lib/system/Makefile -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,882 copying pywfa/WFA2_lib/system/mm_allocator.c -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,887 copying pywfa/WFA2_lib/system/mm_allocator.h -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,892 copying pywfa/WFA2_lib/system/mm_stack.c -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,897 copying pywfa/WFA2_lib/system/mm_stack.h -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,901 copying pywfa/WFA2_lib/system/profiler_counter.c -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,906 copying pywfa/WFA2_lib/system/profiler_counter.h -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,910 copying pywfa/WFA2_lib/system/profiler_timer.c -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,915 copying pywfa/WFA2_lib/system/profiler_timer.h -> build/lib/pywfa/WFA2_lib/system 2023-06-15T10:56:25,919 creating build/lib/pywfa/WFA2_lib/tools 2023-06-15T10:56:25,920 copying pywfa/WFA2_lib/tools/.DS_Store -> build/lib/pywfa/WFA2_lib/tools 2023-06-15T10:56:25,925 copying pywfa/WFA2_lib/tools/README.md -> build/lib/pywfa/WFA2_lib/tools 2023-06-15T10:56:25,930 creating build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,932 copying pywfa/WFA2_lib/utils/Makefile -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,936 copying pywfa/WFA2_lib/utils/bitmap.c -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,940 copying pywfa/WFA2_lib/utils/bitmap.h -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,944 copying pywfa/WFA2_lib/utils/commons.c -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,948 copying pywfa/WFA2_lib/utils/commons.h -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,954 copying pywfa/WFA2_lib/utils/dna_text.c -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,958 copying pywfa/WFA2_lib/utils/dna_text.h -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,962 copying pywfa/WFA2_lib/utils/heatmap.c -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,966 copying pywfa/WFA2_lib/utils/heatmap.h -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,970 copying pywfa/WFA2_lib/utils/sequence_buffer.c -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,975 copying pywfa/WFA2_lib/utils/sequence_buffer.h -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,979 copying pywfa/WFA2_lib/utils/string_padded.c -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,983 copying pywfa/WFA2_lib/utils/string_padded.h -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,987 copying pywfa/WFA2_lib/utils/vector.c -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,991 copying pywfa/WFA2_lib/utils/vector.h -> build/lib/pywfa/WFA2_lib/utils 2023-06-15T10:56:25,996 creating build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:25,998 copying pywfa/WFA2_lib/wavefront/Makefile -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,002 copying pywfa/WFA2_lib/wavefront/wavefront.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,007 copying pywfa/WFA2_lib/wavefront/wavefront.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,012 copying pywfa/WFA2_lib/wavefront/wavefront_align.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,017 copying pywfa/WFA2_lib/wavefront/wavefront_align.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,021 copying pywfa/WFA2_lib/wavefront/wavefront_aligner.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,026 copying pywfa/WFA2_lib/wavefront/wavefront_aligner.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,030 copying pywfa/WFA2_lib/wavefront/wavefront_attributes.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,034 copying pywfa/WFA2_lib/wavefront/wavefront_attributes.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,038 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,044 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,047 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,053 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,057 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,062 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,066 copying pywfa/WFA2_lib/wavefront/wavefront_bialign.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,071 copying pywfa/WFA2_lib/wavefront/wavefront_bialign.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,075 copying pywfa/WFA2_lib/wavefront/wavefront_components.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,080 copying pywfa/WFA2_lib/wavefront/wavefront_components.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,084 copying pywfa/WFA2_lib/wavefront/wavefront_compute.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,089 copying pywfa/WFA2_lib/wavefront/wavefront_compute.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,093 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,097 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,101 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,106 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,110 copying pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,115 copying pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,118 copying pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,124 copying pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,127 copying pywfa/WFA2_lib/wavefront/wavefront_debug.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,132 copying pywfa/WFA2_lib/wavefront/wavefront_debug.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,136 copying pywfa/WFA2_lib/wavefront/wavefront_display.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,140 copying pywfa/WFA2_lib/wavefront/wavefront_display.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,144 copying pywfa/WFA2_lib/wavefront/wavefront_extend.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,149 copying pywfa/WFA2_lib/wavefront/wavefront_extend.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,153 copying pywfa/WFA2_lib/wavefront/wavefront_heuristic.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,159 copying pywfa/WFA2_lib/wavefront/wavefront_heuristic.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,163 copying pywfa/WFA2_lib/wavefront/wavefront_offset.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,167 copying pywfa/WFA2_lib/wavefront/wavefront_pcigar.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,172 copying pywfa/WFA2_lib/wavefront/wavefront_pcigar.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,176 copying pywfa/WFA2_lib/wavefront/wavefront_penalties.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,181 copying pywfa/WFA2_lib/wavefront/wavefront_penalties.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,185 copying pywfa/WFA2_lib/wavefront/wavefront_plot.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,190 copying pywfa/WFA2_lib/wavefront/wavefront_plot.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,193 copying pywfa/WFA2_lib/wavefront/wavefront_slab.c -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,198 copying pywfa/WFA2_lib/wavefront/wavefront_slab.h -> build/lib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,228 installing to build/bdist.linux-armv7l/wheel 2023-06-15T10:56:26,229 running install 2023-06-15T10:56:26,292 running install_lib 2023-06-15T10:56:26,304 creating build/bdist.linux-armv7l 2023-06-15T10:56:26,306 creating build/bdist.linux-armv7l/wheel 2023-06-15T10:56:26,308 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data 2023-06-15T10:56:26,310 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib 2023-06-15T10:56:26,313 copying build/lib/_custom_build.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib 2023-06-15T10:56:26,319 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:26,322 copying build/lib/pywfa/align.cpython-310-darwin.so -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:26,357 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib 2023-06-15T10:56:26,362 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,364 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_plot.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,368 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,373 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,377 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_slab.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,382 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_align.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,386 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,390 copying build/lib/pywfa/WFA2_lib/wavefront/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,394 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,398 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_attributes.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,402 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_plot.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,407 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_components.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,412 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_debug.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,416 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,420 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_bialign.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,426 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,432 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,437 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,442 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,447 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_heuristic.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,452 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_align.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,457 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_components.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,461 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,465 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,468 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_pcigar.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,473 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_heuristic.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,478 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,483 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_bialign.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,486 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,490 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_debug.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,495 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_aligner.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,500 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,504 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_pcigar.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,508 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_slab.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,512 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_aligner.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,517 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,521 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_offset.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,525 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_extend.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,528 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_display.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,533 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_extend.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,538 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,542 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_display.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,546 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,551 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_backtrace.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,557 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,563 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_compute.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,567 copying build/lib/pywfa/WFA2_lib/wavefront/wavefront_attributes.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront 2023-06-15T10:56:26,572 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:26,575 copying build/lib/pywfa/WFA2_lib/scripts/fasta2seq.sh -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:26,580 copying build/lib/pywfa/WFA2_lib/scripts/wfa.alg.rescore.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:26,585 copying build/lib/pywfa/WFA2_lib/scripts/wfa2png.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:26,589 copying build/lib/pywfa/WFA2_lib/scripts/wfa.alg.cmp.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:26,595 copying build/lib/pywfa/WFA2_lib/scripts/seq2fasta.sh -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:26,599 copying build/lib/pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts 2023-06-15T10:56:26,604 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,607 copying build/lib/pywfa/WFA2_lib/system/mm_allocator.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,612 copying build/lib/pywfa/WFA2_lib/system/profiler_timer.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,618 copying build/lib/pywfa/WFA2_lib/system/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,623 copying build/lib/pywfa/WFA2_lib/system/profiler_timer.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,627 copying build/lib/pywfa/WFA2_lib/system/profiler_counter.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,633 copying build/lib/pywfa/WFA2_lib/system/mm_stack.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,637 copying build/lib/pywfa/WFA2_lib/system/profiler_counter.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,641 copying build/lib/pywfa/WFA2_lib/system/mm_stack.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,646 copying build/lib/pywfa/WFA2_lib/system/mm_allocator.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system 2023-06-15T10:56:26,653 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,655 copying build/lib/pywfa/WFA2_lib/build/wavefront.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,661 copying build/lib/pywfa/WFA2_lib/build/affine2p_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,665 copying build/lib/pywfa/WFA2_lib/build/string_padded.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,670 copying build/lib/pywfa/WFA2_lib/build/wavefront_display.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,677 copying build/lib/pywfa/WFA2_lib/build/wavefront_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,681 copying build/lib/pywfa/WFA2_lib/build/wavefront_debug.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,687 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute_edit.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,693 copying build/lib/pywfa/WFA2_lib/build/wavefront_aligner.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,699 copying build/lib/pywfa/WFA2_lib/build/wavefront_components.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,706 copying build/lib/pywfa/WFA2_lib/build/mm_stack.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,710 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute_affine.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,717 copying build/lib/pywfa/WFA2_lib/build/wavefront_backtrace.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,723 copying build/lib/pywfa/WFA2_lib/build/wavefront_extend.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,730 copying build/lib/pywfa/WFA2_lib/build/affine_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,735 copying build/lib/pywfa/WFA2_lib/build/wavefront_bialign.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,741 copying build/lib/pywfa/WFA2_lib/build/mm_allocator.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,749 copying build/lib/pywfa/WFA2_lib/build/wavefront_backtrace_offload.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,755 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute_linear.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,761 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute_affine2p.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,767 copying build/lib/pywfa/WFA2_lib/build/bitmap.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,772 copying build/lib/pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,778 copying build/lib/pywfa/WFA2_lib/build/wavefront_plot.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,783 copying build/lib/pywfa/WFA2_lib/build/wavefront_heuristic.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,789 copying build/lib/pywfa/WFA2_lib/build/commons.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,793 copying build/lib/pywfa/WFA2_lib/build/dna_text.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,797 copying build/lib/pywfa/WFA2_lib/build/wavefront_attributes.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,801 copying build/lib/pywfa/WFA2_lib/build/wavefront_slab.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,806 copying build/lib/pywfa/WFA2_lib/build/cigar.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,812 copying build/lib/pywfa/WFA2_lib/build/profiler_timer.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,816 copying build/lib/pywfa/WFA2_lib/build/profiler_counter.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,822 copying build/lib/pywfa/WFA2_lib/build/wavefront_compute.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,828 copying build/lib/pywfa/WFA2_lib/build/score_matrix.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,832 copying build/lib/pywfa/WFA2_lib/build/heatmap.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,836 copying build/lib/pywfa/WFA2_lib/build/wavefront_pcigar.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,841 copying build/lib/pywfa/WFA2_lib/build/sequence_buffer.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,846 copying build/lib/pywfa/WFA2_lib/build/vector.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,852 copying build/lib/pywfa/WFA2_lib/build/wavefront_align.o -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build 2023-06-15T10:56:26,858 copying build/lib/pywfa/WFA2_lib/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib 2023-06-15T10:56:26,862 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples 2023-06-15T10:56:26,864 copying build/lib/pywfa/WFA2_lib/examples/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples 2023-06-15T10:56:26,867 copying build/lib/pywfa/WFA2_lib/examples/wfa_lambda.cpp -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples 2023-06-15T10:56:26,871 copying build/lib/pywfa/WFA2_lib/examples/wfa_bindings.cpp -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples 2023-06-15T10:56:26,874 copying build/lib/pywfa/WFA2_lib/examples/wfa_repeated.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples 2023-06-15T10:56:26,878 copying build/lib/pywfa/WFA2_lib/examples/wfa_basic.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples 2023-06-15T10:56:26,881 copying build/lib/pywfa/WFA2_lib/examples/README.md -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples 2023-06-15T10:56:26,885 copying build/lib/pywfa/WFA2_lib/examples/wfa_adapt.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples 2023-06-15T10:56:26,888 copying build/lib/pywfa/WFA2_lib/LICENSE -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib 2023-06-15T10:56:26,893 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/lib 2023-06-15T10:56:26,894 copying build/lib/pywfa/WFA2_lib/lib/libwfa.a -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/lib 2023-06-15T10:56:26,947 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,949 copying build/lib/pywfa/WFA2_lib/utils/sequence_buffer.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,953 copying build/lib/pywfa/WFA2_lib/utils/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,957 copying build/lib/pywfa/WFA2_lib/utils/dna_text.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,960 copying build/lib/pywfa/WFA2_lib/utils/commons.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,964 copying build/lib/pywfa/WFA2_lib/utils/vector.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,968 copying build/lib/pywfa/WFA2_lib/utils/bitmap.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,973 copying build/lib/pywfa/WFA2_lib/utils/sequence_buffer.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,977 copying build/lib/pywfa/WFA2_lib/utils/heatmap.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,981 copying build/lib/pywfa/WFA2_lib/utils/bitmap.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,985 copying build/lib/pywfa/WFA2_lib/utils/string_padded.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,989 copying build/lib/pywfa/WFA2_lib/utils/commons.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,994 copying build/lib/pywfa/WFA2_lib/utils/vector.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:26,999 copying build/lib/pywfa/WFA2_lib/utils/string_padded.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:27,003 copying build/lib/pywfa/WFA2_lib/utils/dna_text.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:27,007 copying build/lib/pywfa/WFA2_lib/utils/heatmap.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils 2023-06-15T10:56:27,010 copying build/lib/pywfa/WFA2_lib/VERSION -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib 2023-06-15T10:56:27,013 copying build/lib/pywfa/WFA2_lib/.DS_Store -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib 2023-06-15T10:56:27,019 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,021 copying build/lib/pywfa/WFA2_lib/img/wfa.vs.swg.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,066 copying build/lib/pywfa/WFA2_lib/img/heuristics.none.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,094 copying build/lib/pywfa/WFA2_lib/img/heuristics.band.10.150.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,121 copying build/lib/pywfa/WFA2_lib/img/heuristics.aband.50.50.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,145 copying build/lib/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,175 copying build/lib/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,199 copying build/lib/pywfa/WFA2_lib/img/heuristics.aband.10.10.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,221 copying build/lib/pywfa/WFA2_lib/img/heuristics.band.10.10.png -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img 2023-06-15T10:56:27,244 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,246 copying build/lib/pywfa/WFA2_lib/alignment/Makefile -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,250 copying build/lib/pywfa/WFA2_lib/alignment/cigar.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,254 copying build/lib/pywfa/WFA2_lib/alignment/affine_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,258 copying build/lib/pywfa/WFA2_lib/alignment/affine2p_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,262 copying build/lib/pywfa/WFA2_lib/alignment/affine2p_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,265 copying build/lib/pywfa/WFA2_lib/alignment/affine_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,268 copying build/lib/pywfa/WFA2_lib/alignment/linear_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,272 copying build/lib/pywfa/WFA2_lib/alignment/cigar.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,276 copying build/lib/pywfa/WFA2_lib/alignment/score_matrix.h -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,279 copying build/lib/pywfa/WFA2_lib/alignment/score_matrix.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment 2023-06-15T10:56:27,283 copying build/lib/pywfa/WFA2_lib/.gitignore -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib 2023-06-15T10:56:27,286 copying build/lib/pywfa/WFA2_lib/README.md -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib 2023-06-15T10:56:27,292 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/tools 2023-06-15T10:56:27,294 copying build/lib/pywfa/WFA2_lib/tools/.DS_Store -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/tools 2023-06-15T10:56:27,298 copying build/lib/pywfa/WFA2_lib/tools/README.md -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/tools 2023-06-15T10:56:27,303 copying build/lib/pywfa/align.cpython-39-darwin.so -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,324 copying build/lib/pywfa/WFA_wrap.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,334 copying build/lib/pywfa/WFA_wrap.pxd -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,338 copying build/lib/pywfa/.DS_Store -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,342 copying build/lib/pywfa/__init__.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,347 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/tests 2023-06-15T10:56:27,348 copying build/lib/pywfa/tests/test.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/tests 2023-06-15T10:56:27,353 copying build/lib/pywfa/tests/long.fa -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/tests 2023-06-15T10:56:27,356 copying build/lib/pywfa/tests/long.reference.fa -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/tests 2023-06-15T10:56:27,360 copying build/lib/pywfa/tests/short.fa -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/tests 2023-06-15T10:56:27,363 copying build/lib/pywfa/tests/short.reference.fa -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/tests 2023-06-15T10:56:27,367 copying build/lib/pywfa/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa/tests 2023-06-15T10:56:27,370 copying build/lib/pywfa/align.pyx -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,375 copying build/lib/pywfa/align.c -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,413 copying build/lib/pywfa/align.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,458 copying build/lib/pywfa/align.pxd -> build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa 2023-06-15T10:56:27,461 running install_egg_info 2023-06-15T10:56:27,472 Copying pywfa.egg-info to build/bdist.linux-armv7l/wheel/pywfa-0.5.1.data/platlib/pywfa-0.5.1-py3.7.egg-info 2023-06-15T10:56:27,489 running install_scripts 2023-06-15T10:56:27,518 creating build/bdist.linux-armv7l/wheel/pywfa-0.5.1.dist-info/WHEEL 2023-06-15T10:56:27,526 creating '/tmp/pip-wheel-0yik0lns/.tmp-pvq73pvs/pywfa-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-15T10:56:27,533 adding 'pywfa-0.5.1.data/platlib/_custom_build.py' 2023-06-15T10:56:27,538 adding 'pywfa-0.5.1.data/platlib/pywfa/.DS_Store' 2023-06-15T10:56:27,567 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA_wrap.c' 2023-06-15T10:56:27,575 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA_wrap.pxd' 2023-06-15T10:56:27,579 adding 'pywfa-0.5.1.data/platlib/pywfa/__init__.py' 2023-06-15T10:56:27,703 adding 'pywfa-0.5.1.data/platlib/pywfa/align.c' 2023-06-15T10:56:27,939 adding 'pywfa-0.5.1.data/platlib/pywfa/align.cpython-310-darwin.so' 2023-06-15T10:56:28,358 adding 'pywfa-0.5.1.data/platlib/pywfa/align.cpython-37m-arm-linux-gnueabihf.so' 2023-06-15T10:56:28,518 adding 'pywfa-0.5.1.data/platlib/pywfa/align.cpython-39-darwin.so' 2023-06-15T10:56:28,529 adding 'pywfa-0.5.1.data/platlib/pywfa/align.pxd' 2023-06-15T10:56:28,536 adding 'pywfa-0.5.1.data/platlib/pywfa/align.pyx' 2023-06-15T10:56:28,541 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/.DS_Store' 2023-06-15T10:56:28,545 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/.gitignore' 2023-06-15T10:56:28,548 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/LICENSE' 2023-06-15T10:56:28,551 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/Makefile' 2023-06-15T10:56:28,561 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/README.md' 2023-06-15T10:56:28,565 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/VERSION' 2023-06-15T10:56:28,570 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/Makefile' 2023-06-15T10:56:28,573 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/affine2p_penalties.c' 2023-06-15T10:56:28,577 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/affine2p_penalties.h' 2023-06-15T10:56:28,580 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/affine_penalties.c' 2023-06-15T10:56:28,584 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/affine_penalties.h' 2023-06-15T10:56:28,589 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/cigar.c' 2023-06-15T10:56:28,593 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/cigar.h' 2023-06-15T10:56:28,597 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/linear_penalties.h' 2023-06-15T10:56:28,600 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/score_matrix.c' 2023-06-15T10:56:28,604 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/alignment/score_matrix.h' 2023-06-15T10:56:28,611 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/affine2p_penalties.o' 2023-06-15T10:56:28,615 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/affine_penalties.o' 2023-06-15T10:56:28,621 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/bitmap.o' 2023-06-15T10:56:28,638 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/cigar.o' 2023-06-15T10:56:28,643 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/commons.o' 2023-06-15T10:56:28,647 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/dna_text.o' 2023-06-15T10:56:28,654 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/heatmap.o' 2023-06-15T10:56:28,670 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/mm_allocator.o' 2023-06-15T10:56:28,679 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/mm_stack.o' 2023-06-15T10:56:28,690 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/profiler_counter.o' 2023-06-15T10:56:28,700 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/profiler_timer.o' 2023-06-15T10:56:28,707 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/score_matrix.o' 2023-06-15T10:56:28,713 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/sequence_buffer.o' 2023-06-15T10:56:28,719 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/string_padded.o' 2023-06-15T10:56:28,725 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/vector.o' 2023-06-15T10:56:28,733 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront.o' 2023-06-15T10:56:28,751 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_align.o' 2023-06-15T10:56:28,769 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_aligner.o' 2023-06-15T10:56:28,776 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_attributes.o' 2023-06-15T10:56:28,795 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_backtrace.o' 2023-06-15T10:56:28,812 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o' 2023-06-15T10:56:28,827 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_backtrace_offload.o' 2023-06-15T10:56:28,846 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_bialign.o' 2023-06-15T10:56:28,864 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_components.o' 2023-06-15T10:56:28,880 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_compute.o' 2023-06-15T10:56:28,893 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_compute_affine.o' 2023-06-15T10:56:28,909 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_compute_affine2p.o' 2023-06-15T10:56:28,925 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_compute_edit.o' 2023-06-15T10:56:28,938 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_compute_linear.o' 2023-06-15T10:56:28,952 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_debug.o' 2023-06-15T10:56:28,970 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_display.o' 2023-06-15T10:56:28,989 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_extend.o' 2023-06-15T10:56:29,009 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_heuristic.o' 2023-06-15T10:56:29,026 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_pcigar.o' 2023-06-15T10:56:29,033 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_penalties.o' 2023-06-15T10:56:29,045 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_plot.o' 2023-06-15T10:56:29,057 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/build/wavefront_slab.o' 2023-06-15T10:56:29,061 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples/Makefile' 2023-06-15T10:56:29,064 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples/README.md' 2023-06-15T10:56:29,067 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples/wfa_adapt.c' 2023-06-15T10:56:29,070 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples/wfa_basic.c' 2023-06-15T10:56:29,073 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples/wfa_bindings.cpp' 2023-06-15T10:56:29,076 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples/wfa_lambda.cpp' 2023-06-15T10:56:29,079 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/examples/wfa_repeated.c' 2023-06-15T10:56:29,149 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img/heuristics.aband.10.10.png' 2023-06-15T10:56:29,237 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img/heuristics.aband.50.50.png' 2023-06-15T10:56:29,316 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img/heuristics.band.10.10.png' 2023-06-15T10:56:29,414 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img/heuristics.band.10.150.png' 2023-06-15T10:56:29,538 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img/heuristics.none.png' 2023-06-15T10:56:29,628 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png' 2023-06-15T10:56:29,749 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png' 2023-06-15T10:56:30,017 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/img/wfa.vs.swg.png' 2023-06-15T10:56:30,487 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/lib/libwfa.a' 2023-06-15T10:56:30,509 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts/fasta2seq.sh' 2023-06-15T10:56:30,512 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts/seq2fasta.sh' 2023-06-15T10:56:30,516 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts/wfa.alg.cmp.py' 2023-06-15T10:56:30,519 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh' 2023-06-15T10:56:30,522 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts/wfa.alg.rescore.py' 2023-06-15T10:56:30,526 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/scripts/wfa2png.py' 2023-06-15T10:56:30,530 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/Makefile' 2023-06-15T10:56:30,536 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/mm_allocator.c' 2023-06-15T10:56:30,540 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/mm_allocator.h' 2023-06-15T10:56:30,544 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/mm_stack.c' 2023-06-15T10:56:30,547 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/mm_stack.h' 2023-06-15T10:56:30,551 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/profiler_counter.c' 2023-06-15T10:56:30,554 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/profiler_counter.h' 2023-06-15T10:56:30,558 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/profiler_timer.c' 2023-06-15T10:56:30,561 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/system/profiler_timer.h' 2023-06-15T10:56:30,565 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/tools/.DS_Store' 2023-06-15T10:56:30,570 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/tools/README.md' 2023-06-15T10:56:30,574 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/Makefile' 2023-06-15T10:56:30,577 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/bitmap.c' 2023-06-15T10:56:30,580 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/bitmap.h' 2023-06-15T10:56:30,583 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/commons.c' 2023-06-15T10:56:30,587 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/commons.h' 2023-06-15T10:56:30,590 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/dna_text.c' 2023-06-15T10:56:30,593 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/dna_text.h' 2023-06-15T10:56:30,596 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/heatmap.c' 2023-06-15T10:56:30,599 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/heatmap.h' 2023-06-15T10:56:30,602 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/sequence_buffer.c' 2023-06-15T10:56:30,605 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/sequence_buffer.h' 2023-06-15T10:56:30,608 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/string_padded.c' 2023-06-15T10:56:30,611 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/string_padded.h' 2023-06-15T10:56:30,614 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/vector.c' 2023-06-15T10:56:30,620 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/utils/vector.h' 2023-06-15T10:56:30,626 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/Makefile' 2023-06-15T10:56:30,629 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront.c' 2023-06-15T10:56:30,632 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront.h' 2023-06-15T10:56:30,638 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_align.c' 2023-06-15T10:56:30,641 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_align.h' 2023-06-15T10:56:30,646 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_aligner.c' 2023-06-15T10:56:30,650 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_aligner.h' 2023-06-15T10:56:30,653 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_attributes.c' 2023-06-15T10:56:30,657 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_attributes.h' 2023-06-15T10:56:30,663 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace.c' 2023-06-15T10:56:30,666 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace.h' 2023-06-15T10:56:30,671 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c' 2023-06-15T10:56:30,675 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h' 2023-06-15T10:56:30,679 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c' 2023-06-15T10:56:30,682 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h' 2023-06-15T10:56:30,688 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_bialign.c' 2023-06-15T10:56:30,691 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_bialign.h' 2023-06-15T10:56:30,696 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_components.c' 2023-06-15T10:56:30,699 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_components.h' 2023-06-15T10:56:30,704 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute.c' 2023-06-15T10:56:30,708 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute.h' 2023-06-15T10:56:30,712 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c' 2023-06-15T10:56:30,715 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h' 2023-06-15T10:56:30,719 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c' 2023-06-15T10:56:30,722 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h' 2023-06-15T10:56:30,726 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c' 2023-06-15T10:56:30,729 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h' 2023-06-15T10:56:30,733 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c' 2023-06-15T10:56:30,736 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h' 2023-06-15T10:56:30,739 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_debug.c' 2023-06-15T10:56:30,742 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_debug.h' 2023-06-15T10:56:30,746 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_display.c' 2023-06-15T10:56:30,749 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_display.h' 2023-06-15T10:56:30,754 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_extend.c' 2023-06-15T10:56:30,757 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_extend.h' 2023-06-15T10:56:30,763 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_heuristic.c' 2023-06-15T10:56:30,766 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_heuristic.h' 2023-06-15T10:56:30,769 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_offset.h' 2023-06-15T10:56:30,773 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_pcigar.c' 2023-06-15T10:56:30,776 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_pcigar.h' 2023-06-15T10:56:30,779 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_penalties.c' 2023-06-15T10:56:30,783 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_penalties.h' 2023-06-15T10:56:30,786 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_plot.c' 2023-06-15T10:56:30,789 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_plot.h' 2023-06-15T10:56:30,793 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_slab.c' 2023-06-15T10:56:30,797 adding 'pywfa-0.5.1.data/platlib/pywfa/WFA2_lib/wavefront/wavefront_slab.h' 2023-06-15T10:56:30,800 adding 'pywfa-0.5.1.data/platlib/pywfa/tests/__init__.py' 2023-06-15T10:56:30,803 adding 'pywfa-0.5.1.data/platlib/pywfa/tests/long.fa' 2023-06-15T10:56:30,806 adding 'pywfa-0.5.1.data/platlib/pywfa/tests/long.reference.fa' 2023-06-15T10:56:30,809 adding 'pywfa-0.5.1.data/platlib/pywfa/tests/short.fa' 2023-06-15T10:56:30,812 adding 'pywfa-0.5.1.data/platlib/pywfa/tests/short.reference.fa' 2023-06-15T10:56:30,816 adding 'pywfa-0.5.1.data/platlib/pywfa/tests/test.py' 2023-06-15T10:56:30,820 adding 'pywfa-0.5.1.dist-info/LICENSE' 2023-06-15T10:56:30,824 adding 'pywfa-0.5.1.dist-info/METADATA' 2023-06-15T10:56:30,826 adding 'pywfa-0.5.1.dist-info/WHEEL' 2023-06-15T10:56:30,828 adding 'pywfa-0.5.1.dist-info/top_level.txt' 2023-06-15T10:56:30,835 adding 'pywfa-0.5.1.dist-info/RECORD' 2023-06-15T10:56:30,992 removing build/bdist.linux-armv7l/wheel 2023-06-15T10:56:31,084 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.utils' is absent from the `packages` configuration. 2023-06-15T10:56:31,084 !! 2023-06-15T10:56:31,085 ******************************************************************************** 2023-06-15T10:56:31,085 ############################ 2023-06-15T10:56:31,086 # Package would be ignored # 2023-06-15T10:56:31,086 ############################ 2023-06-15T10:56:31,086 Python recognizes 'pywfa.WFA2_lib.utils' as an importable package[^1], 2023-06-15T10:56:31,087 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:31,087 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:31,088 package, please make sure that 'pywfa.WFA2_lib.utils' is explicitly added 2023-06-15T10:56:31,088 to the `packages` configuration field. 2023-06-15T10:56:31,088 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:31,089 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:31,089 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:31,090 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:31,090 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:31,091 If you don't want 'pywfa.WFA2_lib.utils' to be distributed and are 2023-06-15T10:56:31,091 already explicitly excluding 'pywfa.WFA2_lib.utils' via 2023-06-15T10:56:31,092 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:31,092 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:31,092 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:31,093 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:31,093 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:31,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:31,095 even if it does not contain any `.py` files. 2023-06-15T10:56:31,095 On the other hand, currently there is no concept of package data 2023-06-15T10:56:31,095 directory, all directories are treated like packages. 2023-06-15T10:56:31,096 ******************************************************************************** 2023-06-15T10:56:31,096 !! 2023-06-15T10:56:31,097 check.warn(importable) 2023-06-15T10:56:31,097 /tmp/pip-build-env-wonk7cwl/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pywfa.WFA2_lib.wavefront' is absent from the `packages` configuration. 2023-06-15T10:56:31,098 !! 2023-06-15T10:56:31,099 ******************************************************************************** 2023-06-15T10:56:31,099 ############################ 2023-06-15T10:56:31,100 # Package would be ignored # 2023-06-15T10:56:31,100 ############################ 2023-06-15T10:56:31,101 Python recognizes 'pywfa.WFA2_lib.wavefront' as an importable package[^1], 2023-06-15T10:56:31,101 but it is absent from setuptools' `packages` configuration. 2023-06-15T10:56:31,102 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-15T10:56:31,102 package, please make sure that 'pywfa.WFA2_lib.wavefront' is explicitly added 2023-06-15T10:56:31,102 to the `packages` configuration field. 2023-06-15T10:56:31,103 Alternatively, you can also rely on setuptools' discovery methods 2023-06-15T10:56:31,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-15T10:56:31,104 instead of `find_packages(...)`/`find:`). 2023-06-15T10:56:31,105 You can read more about "package discovery" on setuptools documentation page: 2023-06-15T10:56:31,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-15T10:56:31,107 If you don't want 'pywfa.WFA2_lib.wavefront' to be distributed and are 2023-06-15T10:56:31,107 already explicitly excluding 'pywfa.WFA2_lib.wavefront' via 2023-06-15T10:56:31,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-15T10:56:31,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-15T10:56:31,109 combination with a more fine grained `package-data` configuration. 2023-06-15T10:56:31,110 You can read more about "package data files" on setuptools documentation page: 2023-06-15T10:56:31,111 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-15T10:56:31,112 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-15T10:56:31,113 even if it does not contain any `.py` files. 2023-06-15T10:56:31,113 On the other hand, currently there is no concept of package data 2023-06-15T10:56:31,113 directory, all directories are treated like packages. 2023-06-15T10:56:31,114 ******************************************************************************** 2023-06-15T10:56:31,115 !! 2023-06-15T10:56:31,115 check.warn(importable) 2023-06-15T10:56:31,356 Building wheel for pywfa (pyproject.toml): finished with status 'done' 2023-06-15T10:56:31,601 Created wheel for pywfa: filename=pywfa-0.5.1-py3-none-any.whl size=4070676 sha256=94f1285ddeb8b9cb6e35b70d89f0bf8f9b34963e8a75414bf783b8c8806c6dba 2023-06-15T10:56:31,604 Stored in directory: /tmp/pip-ephem-wheel-cache-a9g2zn7l/wheels/b7/81/67/9bc86ac058039208265cda3e99a2240edfa0fcc3d442d9a54c 2023-06-15T10:56:31,652 Successfully built pywfa 2023-06-15T10:56:31,944 Removed build tracker: '/tmp/pip-build-tracker-1364oq6s'