2023-06-19T02:55:37,449 Created temporary directory: /tmp/pip-build-tracker-vi5s94bf
2023-06-19T02:55:37,450 Initialized build tracking at /tmp/pip-build-tracker-vi5s94bf
2023-06-19T02:55:37,450 Created build tracker: /tmp/pip-build-tracker-vi5s94bf
2023-06-19T02:55:37,450 Entered build tracker: /tmp/pip-build-tracker-vi5s94bf
2023-06-19T02:55:37,451 Created temporary directory: /tmp/pip-wheel-gtwcdz1s
2023-06-19T02:55:37,454 Created temporary directory: /tmp/pip-ephem-wheel-cache-lr6oxumr
2023-06-19T02:55:37,479 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-19T02:55:37,482 2 location(s) to search for versions of pybiotk:
2023-06-19T02:55:37,482 * https://pypi.org/simple/pybiotk/
2023-06-19T02:55:37,482 * https://www.piwheels.org/simple/pybiotk/
2023-06-19T02:55:37,483 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/
2023-06-19T02:55:37,483 Getting page https://pypi.org/simple/pybiotk/
2023-06-19T02:55:37,485 Found index url https://pypi.org/simple/
2023-06-19T02:55:37,547 Fetched page https://pypi.org/simple/pybiotk/ as application/vnd.pypi.simple.v1+json
2023-06-19T02:55:37,549   Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.3
2023-06-19T02:55:37,550   Found link https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.4
2023-06-19T02:55:37,550   Found link https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.6
2023-06-19T02:55:37,550   Found link https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.7
2023-06-19T02:55:37,551   Found link https://files.pythonhosted.org/packages/b7/60/f27ad0c199d09158de9f172415057312c69a824f3589e43787ea24925448/pybiotk-1.0.8.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.8
2023-06-19T02:55:37,551   Found link https://files.pythonhosted.org/packages/fb/74/d26be594d8fc95a6bf87a98c26341ec248f2bb6fe50fa7a78419c8a152d9/pybiotk-1.0.9.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.9
2023-06-19T02:55:37,551   Found link https://files.pythonhosted.org/packages/23/04/fd2a2b3b3177b01265b141db5e1cd962f2e7d435a3cafb23631c2f22076c/pybiotk-1.1.0.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.1.0
2023-06-19T02:55:37,551   Found link https://files.pythonhosted.org/packages/01/7b/9e6f646c28b48a6ef9a434a1b8169c7ec6b8ee8e5ce135c6aa60284ddb84/pybiotk-1.1.1.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.1.1
2023-06-19T02:55:37,552   Found link https://files.pythonhosted.org/packages/f7/2d/b38d75abba8592955a86e4d86c64229b02b37582049427c21925443b1807/pybiotk-1.2.0.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.0
2023-06-19T02:55:37,552 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/
2023-06-19T02:55:37,552 Getting page https://www.piwheels.org/simple/pybiotk/
2023-06-19T02:55:37,553 Found index url https://www.piwheels.org/simple/
2023-06-19T02:55:38,085 Fetched page https://www.piwheels.org/simple/pybiotk/ as text/html
2023-06-19T02:55:38,102   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=9cb3556385c015ece339379fcda2d3dd46022b80c852672e839e31e0a308951e (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,102   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=9cb3556385c015ece339379fcda2d3dd46022b80c852672e839e31e0a308951e (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,103   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04ce4e8c36dacd8f0a727f6acb1cf990b425d3fcd6e1bc426bca2c316de0bcc8 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,103   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04ce4e8c36dacd8f0a727f6acb1cf990b425d3fcd6e1bc426bca2c316de0bcc8 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,104   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=f57da780847a57155b44aa2f7a6e328d345a0f30858083c6669c328b44f194a1 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,104   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=f57da780847a57155b44aa2f7a6e328d345a0f30858083c6669c328b44f194a1 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,104   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=be8faf4c7b17f96a91c7104a7b5d093ce07c4e6ebd458f4501694a0a42c89881 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,105   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=be8faf4c7b17f96a91c7104a7b5d093ce07c4e6ebd458f4501694a0a42c89881 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,105   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=fefc94e675065b00c116d2c61c64d178a20bee1079be65fa097b8f134fee5299 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,105   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=fefc94e675065b00c116d2c61c64d178a20bee1079be65fa097b8f134fee5299 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,106   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp39-cp39-linux_armv7l.whl#sha256=0b05bf968d17d6ee92be8bf21cf3991df7cb3b3d685fee09049dedb2f9d5ee7c (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,106   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp39-cp39-linux_armv6l.whl#sha256=0b05bf968d17d6ee92be8bf21cf3991df7cb3b3d685fee09049dedb2f9d5ee7c (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,106   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp37-cp37m-linux_armv7l.whl#sha256=be124f7f80c27462ab252101b8748b4825aa2718172dd154380e23d7f2dcb954 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,106   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp37-cp37m-linux_armv6l.whl#sha256=be124f7f80c27462ab252101b8748b4825aa2718172dd154380e23d7f2dcb954 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,107   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=16889f2c9c5397540b9fa3bfa0396accff8dce33315140eb793f9bedb013c4ad (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,107   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp39-cp39-linux_armv6l.whl#sha256=16889f2c9c5397540b9fa3bfa0396accff8dce33315140eb793f9bedb013c4ad (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,107   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp37-cp37m-linux_armv7l.whl#sha256=ad3883b734204bdb7f690aa520d991f61667159590a41a71870dda41d888085d (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,108   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp37-cp37m-linux_armv6l.whl#sha256=ad3883b734204bdb7f690aa520d991f61667159590a41a71870dda41d888085d (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,108   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,108   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,109   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv7l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,109   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv6l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,109   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,110   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,110   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv7l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,110   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv6l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,111   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,111   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,111   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,111   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,112   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,112   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,112   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,113   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2023-06-19T02:55:38,113 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/
2023-06-19T02:55:38,113 Skipping link: not a file: https://pypi.org/simple/pybiotk/
2023-06-19T02:55:38,141 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates
2023-06-19T02:55:38,165 Collecting pybiotk==1.2.0
2023-06-19T02:55:38,168   Created temporary directory: /tmp/pip-unpack-bktf1fxc
2023-06-19T02:55:38,240   Downloading pybiotk-1.2.0.tar.gz (99 kB)
2023-06-19T02:55:38,503   Added pybiotk==1.2.0 from https://files.pythonhosted.org/packages/f7/2d/b38d75abba8592955a86e4d86c64229b02b37582049427c21925443b1807/pybiotk-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-vi5s94bf'
2023-06-19T02:55:38,510   Created temporary directory: /tmp/pip-build-env-1164zp0w
2023-06-19T02:55:38,520   Installing build dependencies: started
2023-06-19T02:55:38,521   Running command pip subprocess to install build dependencies
2023-06-19T02:55:39,682   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-06-19T02:55:40,057   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-19T02:55:41,766   Collecting setuptools>=46.1.0
2023-06-19T02:55:41,858     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB)
2023-06-19T02:55:42,218   Collecting setuptools_scm[toml]>=5
2023-06-19T02:55:42,239     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
2023-06-19T02:55:42,464   Collecting wheel
2023-06-19T02:55:42,482     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-06-19T02:55:43,909   Collecting Cython>=0.29.30
2023-06-19T02:55:44,301     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.35-cp39-cp39-linux_armv7l.whl (5.0 MB)
2023-06-19T02:55:44,791   Collecting packaging>=20.0 (from setuptools_scm[toml]>=5)
2023-06-19T02:55:44,808     Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB)
2023-06-19T02:55:44,922   Collecting typing-extensions (from setuptools_scm[toml]>=5)
2023-06-19T02:55:44,940     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.6.3-py3-none-any.whl (31 kB)
2023-06-19T02:55:45,079   Collecting tomli>=1.0.0 (from setuptools_scm[toml]>=5)
2023-06-19T02:55:45,096     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-06-19T02:55:47,197   Installing collected packages: wheel, typing-extensions, tomli, setuptools, packaging, Cython, setuptools_scm
2023-06-19T02:55:47,413     Creating /tmp/pip-build-env-1164zp0w/overlay/bin
2023-06-19T02:55:47,415     changing mode of /tmp/pip-build-env-1164zp0w/overlay/bin/wheel to 755
2023-06-19T02:55:52,509     changing mode of /tmp/pip-build-env-1164zp0w/overlay/bin/cygdb to 755
2023-06-19T02:55:52,511     changing mode of /tmp/pip-build-env-1164zp0w/overlay/bin/cython to 755
2023-06-19T02:55:52,513     changing mode of /tmp/pip-build-env-1164zp0w/overlay/bin/cythonize to 755
2023-06-19T02:55:52,713   Successfully installed Cython-0.29.35 packaging-23.1 setuptools-67.8.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.6.3 wheel-0.40.0
2023-06-19T02:55:53,060   Installing build dependencies: finished with status 'done'
2023-06-19T02:55:53,065   Getting requirements to build wheel: started
2023-06-19T02:55:53,066   Running command Getting requirements to build wheel
2023-06-19T02:55:55,807   Compiling src/bx/bitset.pyx because it changed.
2023-06-19T02:55:55,808   Compiling src/bx/cluster.pyx because it changed.
2023-06-19T02:55:55,808   Compiling src/bx/intersection.pyx because it changed.
2023-06-19T02:55:55,808   [1/3] Cythonizing src/bx/bitset.pyx
2023-06-19T02:55:55,808   [2/3] Cythonizing src/bx/cluster.pyx
2023-06-19T02:55:55,808   [3/3] Cythonizing src/bx/intersection.pyx
2023-06-19T02:55:56,099   running egg_info
2023-06-19T02:55:56,106   writing src/pybiotk.egg-info/PKG-INFO
2023-06-19T02:55:56,109   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2023-06-19T02:55:56,112   writing entry points to src/pybiotk.egg-info/entry_points.txt
2023-06-19T02:55:56,114   writing requirements to src/pybiotk.egg-info/requires.txt
2023-06-19T02:55:56,115   writing top-level names to src/pybiotk.egg-info/top_level.txt
2023-06-19T02:55:56,187   listing git files failed - pretending there aren't any
2023-06-19T02:55:56,197   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2023-06-19T02:55:56,203   adding license file 'LICENSE.txt'
2023-06-19T02:55:56,210   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2023-06-19T02:55:56,385   Getting requirements to build wheel: finished with status 'done'
2023-06-19T02:55:56,395   Created temporary directory: /tmp/pip-modern-metadata-4akrsgl9
2023-06-19T02:55:56,399   Preparing metadata (pyproject.toml): started
2023-06-19T02:55:56,399   Running command Preparing metadata (pyproject.toml)
2023-06-19T02:55:57,719   running dist_info
2023-06-19T02:55:57,740   creating /tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info
2023-06-19T02:55:57,747   writing /tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info/PKG-INFO
2023-06-19T02:55:57,750   writing dependency_links to /tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info/dependency_links.txt
2023-06-19T02:55:57,753   writing entry points to /tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info/entry_points.txt
2023-06-19T02:55:57,755   writing requirements to /tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info/requires.txt
2023-06-19T02:55:57,756   writing top-level names to /tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info/top_level.txt
2023-06-19T02:55:57,757   writing manifest file '/tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info/SOURCES.txt'
2023-06-19T02:55:57,824   listing git files failed - pretending there aren't any
2023-06-19T02:55:57,833   reading manifest file '/tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info/SOURCES.txt'
2023-06-19T02:55:57,836   adding license file 'LICENSE.txt'
2023-06-19T02:55:57,841   writing manifest file '/tmp/pip-modern-metadata-4akrsgl9/pybiotk.egg-info/SOURCES.txt'
2023-06-19T02:55:57,842   creating '/tmp/pip-modern-metadata-4akrsgl9/pybiotk-1.2.0.dist-info'
2023-06-19T02:55:58,066   Preparing metadata (pyproject.toml): finished with status 'done'
2023-06-19T02:55:58,072   Source in /tmp/pip-wheel-gtwcdz1s/pybiotk_86bbd66cefbd4ff3bd8b65ba2fc65449 has version 1.2.0, which satisfies requirement pybiotk==1.2.0 from https://files.pythonhosted.org/packages/f7/2d/b38d75abba8592955a86e4d86c64229b02b37582049427c21925443b1807/pybiotk-1.2.0.tar.gz
2023-06-19T02:55:58,073   Removed pybiotk==1.2.0 from https://files.pythonhosted.org/packages/f7/2d/b38d75abba8592955a86e4d86c64229b02b37582049427c21925443b1807/pybiotk-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-vi5s94bf'
2023-06-19T02:55:58,077 Created temporary directory: /tmp/pip-unpack-6ufcm_gp
2023-06-19T02:55:58,078 Building wheels for collected packages: pybiotk
2023-06-19T02:55:58,082   Created temporary directory: /tmp/pip-wheel-kt5aco_p
2023-06-19T02:55:58,082   Destination directory: /tmp/pip-wheel-kt5aco_p
2023-06-19T02:55:58,084   Building wheel for pybiotk (pyproject.toml): started
2023-06-19T02:55:58,085   Running command Building wheel for pybiotk (pyproject.toml)
2023-06-19T02:55:59,409   running bdist_wheel
2023-06-19T02:55:59,436   running build
2023-06-19T02:55:59,436   running build_py
2023-06-19T02:55:59,446   creating build/lib.linux-armv7l-cpython-39
2023-06-19T02:55:59,446   creating build/lib.linux-armv7l-cpython-39/stream
2023-06-19T02:55:59,447   copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream
2023-06-19T02:55:59,450   copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream
2023-06-19T02:55:59,451   copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream
2023-06-19T02:55:59,455   creating build/lib.linux-armv7l-cpython-39/pybiotk
2023-06-19T02:55:59,456   copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk
2023-06-19T02:55:59,460   creating build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,461   copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,464   copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,466   copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,468   copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,470   copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,472   copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,474   copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,478   copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,481   copying src/pybiotk/utils/reverse_fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,485   copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,488   copying src/pybiotk/utils/genomefetcher.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,491   copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,494   copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,496   copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,498   copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,501   copying src/pybiotk/utils/fastq_join.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,503   copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,506   copying src/pybiotk/utils/fastx_rename.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,508   copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,510   copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,512   copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2023-06-19T02:55:59,516   creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2023-06-19T02:55:59,517   copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2023-06-19T02:55:59,520   copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2023-06-19T02:55:59,522   copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2023-06-19T02:55:59,524   copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2023-06-19T02:55:59,526   creating build/lib.linux-armv7l-cpython-39/pybiotk/data
2023-06-19T02:55:59,528   copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2023-06-19T02:55:59,531   creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2023-06-19T02:55:59,532   copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2023-06-19T02:55:59,534   copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2023-06-19T02:55:59,537   copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2023-06-19T02:55:59,540   copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2023-06-19T02:55:59,542   copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2023-06-19T02:55:59,545   creating build/lib.linux-armv7l-cpython-39/pybiotk/io
2023-06-19T02:55:59,546   copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2023-06-19T02:55:59,548   copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2023-06-19T02:55:59,551   copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2023-06-19T02:55:59,553   copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2023-06-19T02:55:59,556   copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2023-06-19T02:55:59,559   copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2023-06-19T02:55:59,560   copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2023-06-19T02:55:59,564   creating build/lib.linux-armv7l-cpython-39/pybiotk/convert
2023-06-19T02:55:59,565   copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2023-06-19T02:55:59,567   copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2023-06-19T02:55:59,569   copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2023-06-19T02:55:59,571   copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2023-06-19T02:55:59,574   copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2023-06-19T02:55:59,576   copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2023-06-19T02:55:59,578   creating build/lib.linux-armv7l-cpython-39/pybiotk/string
2023-06-19T02:55:59,579   copying src/pybiotk/string/sequence.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string
2023-06-19T02:55:59,582   copying src/pybiotk/string/motif.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string
2023-06-19T02:55:59,584   copying src/pybiotk/string/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string
2023-06-19T02:55:59,585   running egg_info
2023-06-19T02:55:59,610   writing src/pybiotk.egg-info/PKG-INFO
2023-06-19T02:55:59,612   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2023-06-19T02:55:59,615   writing entry points to src/pybiotk.egg-info/entry_points.txt
2023-06-19T02:55:59,617   writing requirements to src/pybiotk.egg-info/requires.txt
2023-06-19T02:55:59,619   writing top-level names to src/pybiotk.egg-info/top_level.txt
2023-06-19T02:55:59,659   listing git files failed - pretending there aren't any
2023-06-19T02:55:59,668   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2023-06-19T02:55:59,673   adding license file 'LICENSE.txt'
2023-06-19T02:55:59,680   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2023-06-19T02:55:59,685   copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2023-06-19T02:55:59,688   copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2023-06-19T02:55:59,696   running build_ext
2023-06-19T02:55:59,702   building 'pybiotk.bx.bitset' extension
2023-06-19T02:55:59,703   creating build/temp.linux-armv7l-cpython-39
2023-06-19T02:55:59,704   creating build/temp.linux-armv7l-cpython-39/build
2023-06-19T02:55:59,705   creating build/temp.linux-armv7l-cpython-39/build/src
2023-06-19T02:55:59,706   creating build/temp.linux-armv7l-cpython-39/build/src/bx
2023-06-19T02:55:59,707   creating build/temp.linux-armv7l-cpython-39/src
2023-06-19T02:55:59,708   creating build/temp.linux-armv7l-cpython-39/src/bx
2023-06-19T02:55:59,710   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o
2023-06-19T02:56:05,179   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o
2023-06-19T02:56:05,573   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o
2023-06-19T02:56:06,009   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o
2023-06-19T02:56:06,190   creating build/lib.linux-armv7l-cpython-39/pybiotk/bx
2023-06-19T02:56:06,191   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so
2023-06-19T02:56:06,322   building 'pybiotk.bx.cluster' extension
2023-06-19T02:56:06,323   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o
2023-06-19T02:56:08,366   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o
2023-06-19T02:56:08,844   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so
2023-06-19T02:56:08,949   building 'pybiotk.bx.intersection' extension
2023-06-19T02:56:08,950   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o
2023-06-19T02:56:17,726   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so
2023-06-19T02:56:17,896   running build_scripts
2023-06-19T02:56:17,897   creating build/scripts-3.9
2023-06-19T02:56:17,898   copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9
2023-06-19T02:56:17,901   copying rscripts/plot_peak_width.R -> build/scripts-3.9
2023-06-19T02:56:17,903   copying rscripts/peak_anno.R -> build/scripts-3.9
2023-06-19T02:56:17,906   copying rscripts/plot_rep_cor.R -> build/scripts-3.9
2023-06-19T02:56:17,908   copying rscripts/plot_venn.R -> build/scripts-3.9
2023-06-19T02:56:17,910   copying rscripts/plot_hist.R -> build/scripts-3.9
2023-06-19T02:56:17,912   copying rscripts/plot_corr.R -> build/scripts-3.9
2023-06-19T02:56:17,915   copying rscripts/plot_chip_summary.R -> build/scripts-3.9
2023-06-19T02:56:17,917   copying rscripts/plot_FRiPs.R -> build/scripts-3.9
2023-06-19T02:56:17,920   copying rscripts/plot_bar.R -> build/scripts-3.9
2023-06-19T02:56:17,922   copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9
2023-06-19T02:56:17,925   copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9
2023-06-19T02:56:17,928   copying rscripts/diff_expr_plot.R -> build/scripts-3.9
2023-06-19T02:56:17,931   copying scripts/get_chrom_length.sh -> build/scripts-3.9
2023-06-19T02:56:17,933   copying scripts/fasta_u2t.sh -> build/scripts-3.9
2023-06-19T02:56:17,935   copying scripts/gtfparser.sh -> build/scripts-3.9
2023-06-19T02:56:17,938   copying scripts/fasta_len.sh -> build/scripts-3.9
2023-06-19T02:56:17,940   copying scripts/remove_duplicates.sh -> build/scripts-3.9
2023-06-19T02:56:17,942   copying scripts/merge_subseq.sh -> build/scripts-3.9
2023-06-19T02:56:17,944   copying scripts/fastq_len.sh -> build/scripts-3.9
2023-06-19T02:56:17,968   installing to build/bdist.linux-armv7l/wheel
2023-06-19T02:56:17,968   running install
2023-06-19T02:56:17,994   running install_lib
2023-06-19T02:56:18,003   creating build/bdist.linux-armv7l
2023-06-19T02:56:18,003   creating build/bdist.linux-armv7l/wheel
2023-06-19T02:56:18,005   creating build/bdist.linux-armv7l/wheel/stream
2023-06-19T02:56:18,006   copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream
2023-06-19T02:56:18,008   copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream
2023-06-19T02:56:18,010   copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream
2023-06-19T02:56:18,013   creating build/bdist.linux-armv7l/wheel/pybiotk
2023-06-19T02:56:18,015   creating build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,016   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,018   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,020   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,022   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,024   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,026   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,028   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,031   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,033   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reverse_fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,034   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,036   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/genomefetcher.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,039   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,041   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,043   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,044   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,046   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_join.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,049   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,050   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastx_rename.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,052   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,054   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,056   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2023-06-19T02:56:18,060   creating build/bdist.linux-armv7l/wheel/pybiotk/bx
2023-06-19T02:56:18,061   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2023-06-19T02:56:18,077   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2023-06-19T02:56:18,083   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2023-06-19T02:56:18,093   creating build/bdist.linux-armv7l/wheel/pybiotk/intervals
2023-06-19T02:56:18,095   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2023-06-19T02:56:18,097   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2023-06-19T02:56:18,100   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2023-06-19T02:56:18,102   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2023-06-19T02:56:18,105   creating build/bdist.linux-armv7l/wheel/pybiotk/data
2023-06-19T02:56:18,106   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2023-06-19T02:56:18,109   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data
2023-06-19T02:56:18,110   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2023-06-19T02:56:18,113   copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk
2023-06-19T02:56:18,118   creating build/bdist.linux-armv7l/wheel/pybiotk/annodb
2023-06-19T02:56:18,119   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2023-06-19T02:56:18,122   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2023-06-19T02:56:18,125   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2023-06-19T02:56:18,127   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2023-06-19T02:56:18,129   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2023-06-19T02:56:18,132   creating build/bdist.linux-armv7l/wheel/pybiotk/io
2023-06-19T02:56:18,133   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2023-06-19T02:56:18,136   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2023-06-19T02:56:18,138   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2023-06-19T02:56:18,141   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2023-06-19T02:56:18,143   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2023-06-19T02:56:18,146   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2023-06-19T02:56:18,147   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2023-06-19T02:56:18,151   creating build/bdist.linux-armv7l/wheel/pybiotk/convert
2023-06-19T02:56:18,152   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2023-06-19T02:56:18,154   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2023-06-19T02:56:18,156   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2023-06-19T02:56:18,158   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2023-06-19T02:56:18,161   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2023-06-19T02:56:18,162   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2023-06-19T02:56:18,165   creating build/bdist.linux-armv7l/wheel/pybiotk/string
2023-06-19T02:56:18,166   copying build/lib.linux-armv7l-cpython-39/pybiotk/string/sequence.py -> build/bdist.linux-armv7l/wheel/pybiotk/string
2023-06-19T02:56:18,168   copying build/lib.linux-armv7l-cpython-39/pybiotk/string/motif.py -> build/bdist.linux-armv7l/wheel/pybiotk/string
2023-06-19T02:56:18,170   copying build/lib.linux-armv7l-cpython-39/pybiotk/string/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/string
2023-06-19T02:56:18,172   running install_egg_info
2023-06-19T02:56:18,182   Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.2.0-py3.9.egg-info
2023-06-19T02:56:18,197   running install_scripts
2023-06-19T02:56:18,198   creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data
2023-06-19T02:56:18,199   creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,200   copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,202   copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,205   copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,208   copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,210   copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,212   copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,214   copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,216   copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,218   copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,220   copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,222   copying build/scripts-3.9/plot_chip_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,224   copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,227   copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,229   copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,230   copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,233   copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,235   copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,238   copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,240   copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,242   copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts
2023-06-19T02:56:18,244   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_deeptools_fragmentsize.R to 755
2023-06-19T02:56:18,244   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_peak_width.R to 755
2023-06-19T02:56:18,245   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/peak_anno.R to 755
2023-06-19T02:56:18,246   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_rep_cor.R to 755
2023-06-19T02:56:18,246   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_venn.R to 755
2023-06-19T02:56:18,247   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_hist.R to 755
2023-06-19T02:56:18,247   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/get_chrom_length.sh to 755
2023-06-19T02:56:18,248   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/fasta_u2t.sh to 755
2023-06-19T02:56:18,248   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/gtfparser.sh to 755
2023-06-19T02:56:18,249   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_corr.R to 755
2023-06-19T02:56:18,250   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_chip_summary.R to 755
2023-06-19T02:56:18,250   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_FRiPs.R to 755
2023-06-19T02:56:18,251   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/plot_bar.R to 755
2023-06-19T02:56:18,251   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/fasta_len.sh to 755
2023-06-19T02:56:18,252   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/diff_expr_DESeq2.R to 755
2023-06-19T02:56:18,252   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/diff_expr_edgeR.R to 755
2023-06-19T02:56:18,253   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/diff_expr_plot.R to 755
2023-06-19T02:56:18,254   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/remove_duplicates.sh to 755
2023-06-19T02:56:18,254   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/merge_subseq.sh to 755
2023-06-19T02:56:18,255   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.data/scripts/fastq_len.sh to 755
2023-06-19T02:56:18,303   creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.0.dist-info/WHEEL
2023-06-19T02:56:18,305   creating '/tmp/pip-wheel-kt5aco_p/.tmp-8xn2c7bx/pybiotk-1.2.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-06-19T02:56:18,308   adding 'pybiotk/__init__.py'
2023-06-19T02:56:18,310   adding 'pybiotk/annodb/__init__.py'
2023-06-19T02:56:18,312   adding 'pybiotk/annodb/anno.py'
2023-06-19T02:56:18,314   adding 'pybiotk/annodb/gene.py'
2023-06-19T02:56:18,316   adding 'pybiotk/annodb/merged_transcript.py'
2023-06-19T02:56:18,318   adding 'pybiotk/annodb/transcript.py'
2023-06-19T02:56:18,412   adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so'
2023-06-19T02:56:18,450   adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so'
2023-06-19T02:56:18,581   adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so'
2023-06-19T02:56:18,588   adding 'pybiotk/convert/__init__.py'
2023-06-19T02:56:18,589   adding 'pybiotk/convert/bam2fastx.py'
2023-06-19T02:56:18,591   adding 'pybiotk/convert/bampe_order_by_name.py'
2023-06-19T02:56:18,593   adding 'pybiotk/convert/bed2bedgraph.py'
2023-06-19T02:56:18,594   adding 'pybiotk/convert/fq2fasta.py'
2023-06-19T02:56:18,596   adding 'pybiotk/convert/gtf2bed.py'
2023-06-19T02:56:18,598   adding 'pybiotk/data/__init__.py'
2023-06-19T02:56:18,601   adding 'pybiotk/data/hg38.chrom.sizes'
2023-06-19T02:56:18,603   adding 'pybiotk/data/mm10.chrom.sizes'
2023-06-19T02:56:18,605   adding 'pybiotk/intervals/__init__.py'
2023-06-19T02:56:18,606   adding 'pybiotk/intervals/grange.py'
2023-06-19T02:56:18,608   adding 'pybiotk/intervals/merge_bed3.py'
2023-06-19T02:56:18,609   adding 'pybiotk/intervals/merge_intervals.py'
2023-06-19T02:56:18,612   adding 'pybiotk/io/__init__.py'
2023-06-19T02:56:18,614   adding 'pybiotk/io/bam.py'
2023-06-19T02:56:18,616   adding 'pybiotk/io/bed.py'
2023-06-19T02:56:18,617   adding 'pybiotk/io/bw.py'
2023-06-19T02:56:18,619   adding 'pybiotk/io/fasta.py'
2023-06-19T02:56:18,621   adding 'pybiotk/io/fastq.py'
2023-06-19T02:56:18,624   adding 'pybiotk/io/gtf.py'
2023-06-19T02:56:18,626   adding 'pybiotk/string/__init__.py'
2023-06-19T02:56:18,627   adding 'pybiotk/string/motif.py'
2023-06-19T02:56:18,629   adding 'pybiotk/string/sequence.py'
2023-06-19T02:56:18,631   adding 'pybiotk/utils/__init__.py'
2023-06-19T02:56:18,633   adding 'pybiotk/utils/bam_random.py'
2023-06-19T02:56:18,634   adding 'pybiotk/utils/fasta_filter.py'
2023-06-19T02:56:18,636   adding 'pybiotk/utils/fastq_join.py'
2023-06-19T02:56:18,638   adding 'pybiotk/utils/fastq_uniq.py'
2023-06-19T02:56:18,640   adding 'pybiotk/utils/fastx_rename.py'
2023-06-19T02:56:18,641   adding 'pybiotk/utils/fragment_size.py'
2023-06-19T02:56:18,643   adding 'pybiotk/utils/genomefetcher.py'
2023-06-19T02:56:18,645   adding 'pybiotk/utils/gtf_filter.py'
2023-06-19T02:56:18,647   adding 'pybiotk/utils/merge_row.py'
2023-06-19T02:56:18,648   adding 'pybiotk/utils/merge_subseq.py'
2023-06-19T02:56:18,650   adding 'pybiotk/utils/normalize.py'
2023-06-19T02:56:18,652   adding 'pybiotk/utils/pyanno.py'
2023-06-19T02:56:18,654   adding 'pybiotk/utils/read_tables.py'
2023-06-19T02:56:18,656   adding 'pybiotk/utils/reference_count.py'
2023-06-19T02:56:18,657   adding 'pybiotk/utils/reverse_fastx.py'
2023-06-19T02:56:18,659   adding 'pybiotk/utils/rmats_filter.py'
2023-06-19T02:56:18,661   adding 'pybiotk/utils/seq_random.py'
2023-06-19T02:56:18,662   adding 'pybiotk/utils/subseq_analysis.py'
2023-06-19T02:56:18,665   adding 'pybiotk/utils/summary_log.py'
2023-06-19T02:56:18,667   adding 'pybiotk/utils/utils.py'
2023-06-19T02:56:18,670   adding 'pybiotk-1.2.0.data/scripts/diff_expr_DESeq2.R'
2023-06-19T02:56:18,672   adding 'pybiotk-1.2.0.data/scripts/diff_expr_edgeR.R'
2023-06-19T02:56:18,675   adding 'pybiotk-1.2.0.data/scripts/diff_expr_plot.R'
2023-06-19T02:56:18,676   adding 'pybiotk-1.2.0.data/scripts/fasta_len.sh'
2023-06-19T02:56:18,678   adding 'pybiotk-1.2.0.data/scripts/fasta_u2t.sh'
2023-06-19T02:56:18,679   adding 'pybiotk-1.2.0.data/scripts/fastq_len.sh'
2023-06-19T02:56:18,681   adding 'pybiotk-1.2.0.data/scripts/get_chrom_length.sh'
2023-06-19T02:56:18,682   adding 'pybiotk-1.2.0.data/scripts/gtfparser.sh'
2023-06-19T02:56:18,684   adding 'pybiotk-1.2.0.data/scripts/merge_subseq.sh'
2023-06-19T02:56:18,685   adding 'pybiotk-1.2.0.data/scripts/peak_anno.R'
2023-06-19T02:56:18,687   adding 'pybiotk-1.2.0.data/scripts/plot_FRiPs.R'
2023-06-19T02:56:18,689   adding 'pybiotk-1.2.0.data/scripts/plot_bar.R'
2023-06-19T02:56:18,690   adding 'pybiotk-1.2.0.data/scripts/plot_chip_summary.R'
2023-06-19T02:56:18,692   adding 'pybiotk-1.2.0.data/scripts/plot_corr.R'
2023-06-19T02:56:18,694   adding 'pybiotk-1.2.0.data/scripts/plot_deeptools_fragmentsize.R'
2023-06-19T02:56:18,695   adding 'pybiotk-1.2.0.data/scripts/plot_hist.R'
2023-06-19T02:56:18,697   adding 'pybiotk-1.2.0.data/scripts/plot_peak_width.R'
2023-06-19T02:56:18,699   adding 'pybiotk-1.2.0.data/scripts/plot_rep_cor.R'
2023-06-19T02:56:18,700   adding 'pybiotk-1.2.0.data/scripts/plot_venn.R'
2023-06-19T02:56:18,702   adding 'pybiotk-1.2.0.data/scripts/remove_duplicates.sh'
2023-06-19T02:56:18,705   adding 'stream/__init__.py'
2023-06-19T02:56:18,707   adding 'stream/pipe.py'
2023-06-19T02:56:18,709   adding 'stream/stream.py'
2023-06-19T02:56:18,711   adding 'pybiotk-1.2.0.dist-info/LICENSE.txt'
2023-06-19T02:56:18,712   adding 'pybiotk-1.2.0.dist-info/METADATA'
2023-06-19T02:56:18,713   adding 'pybiotk-1.2.0.dist-info/WHEEL'
2023-06-19T02:56:18,715   adding 'pybiotk-1.2.0.dist-info/entry_points.txt'
2023-06-19T02:56:18,716   adding 'pybiotk-1.2.0.dist-info/top_level.txt'
2023-06-19T02:56:18,718   adding 'pybiotk-1.2.0.dist-info/RECORD'
2023-06-19T02:56:18,730   removing build/bdist.linux-armv7l/wheel
2023-06-19T02:56:18,887   Building wheel for pybiotk (pyproject.toml): finished with status 'done'
2023-06-19T02:56:18,903   Created wheel for pybiotk: filename=pybiotk-1.2.0-cp39-cp39-linux_armv7l.whl size=564647 sha256=b554bf72c5b0bffe6c1e9a74088314014bb813c6d1d9b6578745e246a0d45687
2023-06-19T02:56:18,904   Stored in directory: /tmp/pip-ephem-wheel-cache-lr6oxumr/wheels/c9/64/ae/0a07c728b0570297b3998b3e371933c5d06c11840fa250a4c0
2023-06-19T02:56:18,917 Successfully built pybiotk
2023-06-19T02:56:18,939 Removed build tracker: '/tmp/pip-build-tracker-vi5s94bf'