2023-06-19T08:45:11,182 Created temporary directory: /tmp/pip-build-tracker-8ru3kgms
2023-06-19T08:45:11,186 Initialized build tracking at /tmp/pip-build-tracker-8ru3kgms
2023-06-19T08:45:11,186 Created build tracker: /tmp/pip-build-tracker-8ru3kgms
2023-06-19T08:45:11,186 Entered build tracker: /tmp/pip-build-tracker-8ru3kgms
2023-06-19T08:45:11,188 Created temporary directory: /tmp/pip-wheel-ktgi1vxr
2023-06-19T08:45:11,196 Created temporary directory: /tmp/pip-ephem-wheel-cache-s5eeuhmg
2023-06-19T08:45:11,249 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-19T08:45:11,257 2 location(s) to search for versions of kmergenetyper:
2023-06-19T08:45:11,257 * https://pypi.org/simple/kmergenetyper/
2023-06-19T08:45:11,257 * https://www.piwheels.org/simple/kmergenetyper/
2023-06-19T08:45:11,258 Fetching project page and analyzing links: https://pypi.org/simple/kmergenetyper/
2023-06-19T08:45:11,259 Getting page https://pypi.org/simple/kmergenetyper/
2023-06-19T08:45:11,263 Found index url https://pypi.org/simple/
2023-06-19T08:45:11,447 Fetched page https://pypi.org/simple/kmergenetyper/ as application/vnd.pypi.simple.v1+json
2023-06-19T08:45:11,457   Found link https://files.pythonhosted.org/packages/07/e1/32da0abd3e1a424d0dfdfababf8f55009a9070f094daba8269857c24b6fb/kmergenetyper-1.0.0.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.0
2023-06-19T08:45:11,458   Found link https://files.pythonhosted.org/packages/ef/4b/5da7fc6c85ee329fdbad2f7cd0c556baf9e43a19267f4693def6b0e9bf55/kmergenetyper-1.0.1.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.1
2023-06-19T08:45:11,458   Found link https://files.pythonhosted.org/packages/0c/ea/c9704184cd46f95e44d28df008c16492f8d116a0312a524a40dc33015ad4/kmergenetyper-1.0.2.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.2
2023-06-19T08:45:11,459   Found link https://files.pythonhosted.org/packages/05/8b/76626c85314fa93a971a8a1fd2b8b5d2e29819511dca49ae79cc1d81bf6e/kmergenetyper-1.0.3.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.3
2023-06-19T08:45:11,460   Found link https://files.pythonhosted.org/packages/43/78/c63fbd748d8a0ebe0451ec683eb39c2402c05cf366bf298b352eaaf05378/kmergenetyper-1.0.4.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.4
2023-06-19T08:45:11,460   Found link https://files.pythonhosted.org/packages/91/e7/399c3dc59073bec9c6ee33ea6b3c6b12d1cc23e1393fa0cc6e2c53fe7937/kmergenetyper-1.0.5.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.5
2023-06-19T08:45:11,461   Found link https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.6
2023-06-19T08:45:11,462   Found link https://files.pythonhosted.org/packages/f1/44/d05bf03b067d18bc15e9e57a6e114b876418bb8c83be502c712cef3a958a/kmergenetyper-1.0.7.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.7
2023-06-19T08:45:11,462   Found link https://files.pythonhosted.org/packages/e3/e7/127c1d33013b6176bd975ec56c2793b2888b903479794639d464251ebf17/kmergenetyper-1.0.8.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.8
2023-06-19T08:45:11,463   Found link https://files.pythonhosted.org/packages/5d/ae/321fdf636e730e328a51851060905d6ad88481ecfc38352aafe0bb250ef7/kmergenetyper-1.0.9.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.9
2023-06-19T08:45:11,464   Found link https://files.pythonhosted.org/packages/55/85/e138b090fcfdc379c7e6e06291249c0d11c1fc68c7f841f61c0f7f57a2c7/kmergenetyper-1.0.10.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.10
2023-06-19T08:45:11,465   Found link https://files.pythonhosted.org/packages/51/c4/176bfaed5541263924c240d450b6bf5c81c4f1441901b47960ec21eaed7b/kmergenetyper-1.0.11.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.11
2023-06-19T08:45:11,465   Found link https://files.pythonhosted.org/packages/d0/51/c73da5eb63d32adf7dd6bcc811fc3862bd0d8e1cdac86aa0df8b775cf4e2/kmergenetyper-1.0.12.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.12
2023-06-19T08:45:11,466   Found link https://files.pythonhosted.org/packages/42/78/df8483c2da802b63762585695071bfafaee487fccce55b8a1f578c67129b/kmergenetyper-1.0.13.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.13
2023-06-19T08:45:11,467   Found link https://files.pythonhosted.org/packages/3f/23/7d74cddb379e944d4cbbf67f3c0a13d0cc95f56ab4a55ce30cd4a66a52dd/kmergenetyper-1.0.14.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.14
2023-06-19T08:45:11,467   Found link https://files.pythonhosted.org/packages/d2/08/8c7b265b349069d6e31a0e7dcff02504bf65e718bfe2caf9004322c39b37/kmergenetyper-1.0.15.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.15
2023-06-19T08:45:11,468   Found link https://files.pythonhosted.org/packages/28/c3/2be171e593a1e75ece3e791ca782ee3368eea65ff7e00da45ad1007bdfd2/kmergenetyper-1.0.17.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.17
2023-06-19T08:45:11,469   Found link https://files.pythonhosted.org/packages/7f/16/e1b11b29c8e8e9c55a7886831fa0fc66a6f04d9bdd7e43ca35b4b8cfe9ef/kmergenetyper-1.0.18.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.18
2023-06-19T08:45:11,470 Fetching project page and analyzing links: https://www.piwheels.org/simple/kmergenetyper/
2023-06-19T08:45:11,470 Getting page https://www.piwheels.org/simple/kmergenetyper/
2023-06-19T08:45:11,473 Found index url https://www.piwheels.org/simple/
2023-06-19T08:45:11,693 Fetched page https://www.piwheels.org/simple/kmergenetyper/ as text/html
2023-06-19T08:45:11,707   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.15-py3-none-any.whl#sha256=67a751289471ce868245874a7f4fd154e023031bcd853bb85c8e4a7ae5cbd69a (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,708   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.14-py3-none-any.whl#sha256=3b2ab624826a59e5cca07414927ee52c0eda6d7c08260bed3659cddcd23fcfe2 (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,708   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.13-py3-none-any.whl#sha256=341290b193c7afe7299d36a6f411ef417c2dd9f8efb458df58f5f9e00eb3eb0c (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,709   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.12-py3-none-any.whl#sha256=ed88ae39d918929cb04f7b35a1eaa4b44e8ba20766d066b207ea5467914de98f (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,710   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.11-py3-none-any.whl#sha256=d2ecf2fade1268e8e33fb44e3533dca334e9e36ff49c440f771ce7599520acc6 (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,710   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.10-py3-none-any.whl#sha256=0db04840ee71fceaae2c473197c75fe0e9154b992a3a81b6782a021021ae09e6 (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,711   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.9-py3-none-any.whl#sha256=40f073c81e4978a692271b72407989b00fc9f270d6f1e7aca670d8447780a87f (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,711   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.8-py3-none-any.whl#sha256=76cf8c5c5e4fbe86b1a27920802be0604fd45a6cc94cc96a92daae48225b7d98 (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,712   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.7-py3-none-any.whl#sha256=bcc5f48a2e49e413f851d462683071f08e582ba2e79e4fea6566510c5a4b768a (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,713   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.6-py3-none-any.whl#sha256=ab143997e9a6010d7564b7eb332e30020e906dccb16109f80e7d9e7a4f7f522c (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,713   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.5-py3-none-any.whl#sha256=877e9f780151c571325541fd815a495ffc63a5d59a10bb71b900d649a52791b3 (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,714   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.4-py3-none-any.whl#sha256=d48c366b8f5b9a584c25199de4ad637d9148de4f7e690cf89dbc99bc0bf3cd12 (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,714   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.3-py3-none-any.whl#sha256=4da0dc59a822ade5f5437e73b699edf2efd0c1ced5911496db506d0f99f8c6fc (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,715   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.2-py3-none-any.whl#sha256=8647efa3afcd2812e0cddd6b46be8e62ba9cee51f8c364a62820efc5faf54b69 (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,716   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.1-py3-none-any.whl#sha256=0ac6724b8b358e46144560e2fc69d753c7ebfa34243a55477bdb59221da645dd (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,716   Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.0-py3-none-any.whl#sha256=f9349c95e0500e10963c0c41b8419305a344ceda1e21cd271ff2ac1b6e0652f6 (from https://www.piwheels.org/simple/kmergenetyper/)
2023-06-19T08:45:11,717 Skipping link: not a file: https://www.piwheels.org/simple/kmergenetyper/
2023-06-19T08:45:11,718 Skipping link: not a file: https://pypi.org/simple/kmergenetyper/
2023-06-19T08:45:11,756 Given no hashes to check 1 links for project 'kmergenetyper': discarding no candidates
2023-06-19T08:45:11,792 Collecting kmergenetyper==1.0.17
2023-06-19T08:45:11,797   Created temporary directory: /tmp/pip-unpack-_fw8pwa6
2023-06-19T08:45:11,973   Downloading kmergenetyper-1.0.17.tar.gz (8.2 kB)
2023-06-19T08:45:12,055   Added kmergenetyper==1.0.17 from https://files.pythonhosted.org/packages/28/c3/2be171e593a1e75ece3e791ca782ee3368eea65ff7e00da45ad1007bdfd2/kmergenetyper-1.0.17.tar.gz to build tracker '/tmp/pip-build-tracker-8ru3kgms'
2023-06-19T08:45:12,059   Running setup.py (path:/tmp/pip-wheel-ktgi1vxr/kmergenetyper_8089829179b14cf0aed3353d537bf626/setup.py) egg_info for package kmergenetyper
2023-06-19T08:45:12,061   Created temporary directory: /tmp/pip-pip-egg-info-klwrziad
2023-06-19T08:45:12,061   Preparing metadata (setup.py): started
2023-06-19T08:45:12,063   Running command python setup.py egg_info
2023-06-19T08:45:13,604   running egg_info
2023-06-19T08:45:13,613   creating /tmp/pip-pip-egg-info-klwrziad/kmergenetyper.egg-info
2023-06-19T08:45:13,678   writing /tmp/pip-pip-egg-info-klwrziad/kmergenetyper.egg-info/PKG-INFO
2023-06-19T08:45:13,682   writing dependency_links to /tmp/pip-pip-egg-info-klwrziad/kmergenetyper.egg-info/dependency_links.txt
2023-06-19T08:45:13,688   writing top-level names to /tmp/pip-pip-egg-info-klwrziad/kmergenetyper.egg-info/top_level.txt
2023-06-19T08:45:13,690   writing manifest file '/tmp/pip-pip-egg-info-klwrziad/kmergenetyper.egg-info/SOURCES.txt'
2023-06-19T08:45:13,970   reading manifest file '/tmp/pip-pip-egg-info-klwrziad/kmergenetyper.egg-info/SOURCES.txt'
2023-06-19T08:45:13,973   adding license file 'LICENSE'
2023-06-19T08:45:13,979   writing manifest file '/tmp/pip-pip-egg-info-klwrziad/kmergenetyper.egg-info/SOURCES.txt'
2023-06-19T08:45:14,099   Preparing metadata (setup.py): finished with status 'done'
2023-06-19T08:45:14,110   Source in /tmp/pip-wheel-ktgi1vxr/kmergenetyper_8089829179b14cf0aed3353d537bf626 has version 1.0.17, which satisfies requirement kmergenetyper==1.0.17 from https://files.pythonhosted.org/packages/28/c3/2be171e593a1e75ece3e791ca782ee3368eea65ff7e00da45ad1007bdfd2/kmergenetyper-1.0.17.tar.gz
2023-06-19T08:45:14,112   Removed kmergenetyper==1.0.17 from https://files.pythonhosted.org/packages/28/c3/2be171e593a1e75ece3e791ca782ee3368eea65ff7e00da45ad1007bdfd2/kmergenetyper-1.0.17.tar.gz from build tracker '/tmp/pip-build-tracker-8ru3kgms'
2023-06-19T08:45:14,121 Created temporary directory: /tmp/pip-unpack-se5wyzk6
2023-06-19T08:45:14,122 Building wheels for collected packages: kmergenetyper
2023-06-19T08:45:14,131   Created temporary directory: /tmp/pip-wheel-6rc6hfo7
2023-06-19T08:45:14,132   Building wheel for kmergenetyper (setup.py): started
2023-06-19T08:45:14,134   Destination directory: /tmp/pip-wheel-6rc6hfo7
2023-06-19T08:45:14,134   Running command python setup.py bdist_wheel
2023-06-19T08:45:15,680   running bdist_wheel
2023-06-19T08:45:16,413   running build
2023-06-19T08:45:16,414   running build_py
2023-06-19T08:45:16,488   creating build
2023-06-19T08:45:16,488   creating build/lib
2023-06-19T08:45:16,490   creating build/lib/kmergenetyper
2023-06-19T08:45:16,492   copying kmergenetyper/version.py -> build/lib/kmergenetyper
2023-06-19T08:45:16,496   copying kmergenetyper/__init__.py -> build/lib/kmergenetyper
2023-06-19T08:45:16,499   copying kmergenetyper/kma.py -> build/lib/kmergenetyper
2023-06-19T08:45:16,502   copying kmergenetyper/realignConsensus.py -> build/lib/kmergenetyper
2023-06-19T08:45:16,507   copying kmergenetyper/typeGenes.py -> build/lib/kmergenetyper
2023-06-19T08:45:16,510   running egg_info
2023-06-19T08:45:16,661   writing kmergenetyper.egg-info/PKG-INFO
2023-06-19T08:45:16,665   writing dependency_links to kmergenetyper.egg-info/dependency_links.txt
2023-06-19T08:45:16,670   writing top-level names to kmergenetyper.egg-info/top_level.txt
2023-06-19T08:45:16,738   reading manifest file 'kmergenetyper.egg-info/SOURCES.txt'
2023-06-19T08:45:16,742   adding license file 'LICENSE'
2023-06-19T08:45:16,748   writing manifest file 'kmergenetyper.egg-info/SOURCES.txt'
2023-06-19T08:45:16,753   running build_scripts
2023-06-19T08:45:16,754   creating build/scripts-3.7
2023-06-19T08:45:16,755   copying and adjusting bin/kmergenetyper -> build/scripts-3.7
2023-06-19T08:45:16,758   changing mode of build/scripts-3.7/kmergenetyper from 644 to 755
2023-06-19T08:45:16,836   /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-06-19T08:45:16,837   !!

2023-06-19T08:45:16,837           ********************************************************************************
2023-06-19T08:45:16,838           Please avoid running ``setup.py`` directly.
2023-06-19T08:45:16,838           Instead, use pypa/build, pypa/installer, pypa/build or
2023-06-19T08:45:16,838           other standards-based tools.

2023-06-19T08:45:16,839           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-06-19T08:45:16,839           ********************************************************************************

2023-06-19T08:45:16,840   !!
2023-06-19T08:45:16,840     self.initialize_options()
2023-06-19T08:45:16,904   installing to build/bdist.linux-armv7l/wheel
2023-06-19T08:45:16,904   running install
2023-06-19T08:45:16,967   running install_lib
2023-06-19T08:45:17,037   creating build/bdist.linux-armv7l
2023-06-19T08:45:17,038   creating build/bdist.linux-armv7l/wheel
2023-06-19T08:45:17,041   creating build/bdist.linux-armv7l/wheel/kmergenetyper
2023-06-19T08:45:17,043   copying build/lib/kmergenetyper/version.py -> build/bdist.linux-armv7l/wheel/kmergenetyper
2023-06-19T08:45:17,047   copying build/lib/kmergenetyper/__init__.py -> build/bdist.linux-armv7l/wheel/kmergenetyper
2023-06-19T08:45:17,050   copying build/lib/kmergenetyper/kma.py -> build/bdist.linux-armv7l/wheel/kmergenetyper
2023-06-19T08:45:17,054   copying build/lib/kmergenetyper/realignConsensus.py -> build/bdist.linux-armv7l/wheel/kmergenetyper
2023-06-19T08:45:17,058   copying build/lib/kmergenetyper/typeGenes.py -> build/bdist.linux-armv7l/wheel/kmergenetyper
2023-06-19T08:45:17,061   running install_egg_info
2023-06-19T08:45:17,139   Copying kmergenetyper.egg-info to build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.17-py3.7.egg-info
2023-06-19T08:45:17,157   running install_scripts
2023-06-19T08:45:17,159   creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.17.data
2023-06-19T08:45:17,160   creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.17.data/scripts
2023-06-19T08:45:17,162   copying build/scripts-3.7/kmergenetyper -> build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.17.data/scripts
2023-06-19T08:45:17,165   changing mode of build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.17.data/scripts/kmergenetyper to 755
2023-06-19T08:45:17,190   creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.17.dist-info/WHEEL
2023-06-19T08:45:17,195   creating '/tmp/pip-wheel-6rc6hfo7/kmergenetyper-1.0.17-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-06-19T08:45:17,200   adding 'kmergenetyper/__init__.py'
2023-06-19T08:45:17,203   adding 'kmergenetyper/kma.py'
2023-06-19T08:45:17,206   adding 'kmergenetyper/realignConsensus.py'
2023-06-19T08:45:17,209   adding 'kmergenetyper/typeGenes.py'
2023-06-19T08:45:17,211   adding 'kmergenetyper/version.py'
2023-06-19T08:45:17,216   adding 'kmergenetyper-1.0.17.data/scripts/kmergenetyper'
2023-06-19T08:45:17,224   adding 'kmergenetyper-1.0.17.dist-info/LICENSE'
2023-06-19T08:45:17,226   adding 'kmergenetyper-1.0.17.dist-info/METADATA'
2023-06-19T08:45:17,228   adding 'kmergenetyper-1.0.17.dist-info/WHEEL'
2023-06-19T08:45:17,230   adding 'kmergenetyper-1.0.17.dist-info/top_level.txt'
2023-06-19T08:45:17,232   adding 'kmergenetyper-1.0.17.dist-info/RECORD'
2023-06-19T08:45:17,234   removing build/bdist.linux-armv7l/wheel
2023-06-19T08:45:17,400   Building wheel for kmergenetyper (setup.py): finished with status 'done'
2023-06-19T08:45:17,407   Created wheel for kmergenetyper: filename=kmergenetyper-1.0.17-py3-none-any.whl size=9511 sha256=c0beecfd4f38875cc046c80da4ffdca7bbc3a6cd0a42141537cdb25cc3c7cb0c
2023-06-19T08:45:17,409   Stored in directory: /tmp/pip-ephem-wheel-cache-s5eeuhmg/wheels/be/df/dd/14346ddf83597e44c83c95fd3dfa18ab4e1ce692cf8ff53020
2023-06-19T08:45:17,435 Successfully built kmergenetyper
2023-06-19T08:45:17,442 Removed build tracker: '/tmp/pip-build-tracker-8ru3kgms'