2023-06-21T07:53:49,929 Created temporary directory: /tmp/pip-build-tracker-j900lgn3 2023-06-21T07:53:49,932 Initialized build tracking at /tmp/pip-build-tracker-j900lgn3 2023-06-21T07:53:49,933 Created build tracker: /tmp/pip-build-tracker-j900lgn3 2023-06-21T07:53:49,933 Entered build tracker: /tmp/pip-build-tracker-j900lgn3 2023-06-21T07:53:49,934 Created temporary directory: /tmp/pip-wheel-0rf0bzk2 2023-06-21T07:53:49,943 Created temporary directory: /tmp/pip-ephem-wheel-cache-as1zottl 2023-06-21T07:53:49,995 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-21T07:53:50,003 2 location(s) to search for versions of damona: 2023-06-21T07:53:50,003 * https://pypi.org/simple/damona/ 2023-06-21T07:53:50,003 * https://www.piwheels.org/simple/damona/ 2023-06-21T07:53:50,004 Fetching project page and analyzing links: https://pypi.org/simple/damona/ 2023-06-21T07:53:50,005 Getting page https://pypi.org/simple/damona/ 2023-06-21T07:53:50,009 Found index url https://pypi.org/simple/ 2023-06-21T07:53:50,214 Fetched page https://pypi.org/simple/damona/ as application/vnd.pypi.simple.v1+json 2023-06-21T07:53:50,227 Found link https://files.pythonhosted.org/packages/cd/9e/27ac1c5e27caa58f2d161dff75c5c4cdd92670440b07e7709802a9459b9c/damona-0.1.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.1.0 2023-06-21T07:53:50,228 Found link https://files.pythonhosted.org/packages/c9/20/7fe4d2f1c34300ed845a3b033a8cd8b3de72b82a25599330b10e2317ca48/damona-0.1.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.1.1 2023-06-21T07:53:50,228 Found link https://files.pythonhosted.org/packages/36/9b/153b2e8849b6cf3b78ac13c3e30fbd4f1774c31b7b34cb849eb3a14bf69c/damona-0.2.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.2.0 2023-06-21T07:53:50,229 Found link https://files.pythonhosted.org/packages/5d/85/e936fbc729383625e399b7dabd3238995c915084986ec573588855c921ee/damona-0.2.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.2.1 2023-06-21T07:53:50,230 Found link https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz (from https://pypi.org/simple/damona/), version: 0.2.2 2023-06-21T07:53:50,231 Found link https://files.pythonhosted.org/packages/2a/2f/3eca4d23aad1c0df2a1f708f49fd68de86b47fb3ff0b7270182074adbe24/damona-0.3.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.3.0 2023-06-21T07:53:50,231 Found link https://files.pythonhosted.org/packages/a4/85/cf3ba30aadaf7e322c200ff61874eb24a3ded6d64ad308d15760d26338f1/damona-0.3.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.3.1 2023-06-21T07:53:50,232 Found link https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.4.0 2023-06-21T07:53:50,233 Found link https://files.pythonhosted.org/packages/66/87/cc314bac96ca0afc29e95d91a07d70c56df5c37cb4209f8bfc4eb959418a/damona-0.4.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.4.1 2023-06-21T07:53:50,233 Found link https://files.pythonhosted.org/packages/50/5a/2b91d89732ad7eabd61d2060de0ecc94c4a04c25999f199d2cb93ff943e5/damona-0.4.2.tar.gz (from https://pypi.org/simple/damona/), version: 0.4.2 2023-06-21T07:53:50,234 Found link https://files.pythonhosted.org/packages/e5/d8/0d4fe942e4a6dd2b5a45ac16a038f99dbea115dde61c41aec5f2815ef2a6/damona-0.4.3.tar.gz (from https://pypi.org/simple/damona/), version: 0.4.3 2023-06-21T07:53:50,235 Found link https://files.pythonhosted.org/packages/9e/e0/d085c328e8cc39ca40e2176f3c5c5ffeb66e1271abeeb36f863c5acb8bc1/damona-0.5.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.0 2023-06-21T07:53:50,235 Found link https://files.pythonhosted.org/packages/73/65/3e225ffc73fe435cc40b8658c3838e18b66bac46c2f2227c858c1751b485/damona-0.5.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.1 2023-06-21T07:53:50,236 Found link https://files.pythonhosted.org/packages/09/b4/f0570169435b2629cac80df83e3140b82a480cdfd795f8f6c54c4c36d53e/damona-0.5.2.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.2 2023-06-21T07:53:50,237 Found link https://files.pythonhosted.org/packages/34/85/cce2fff4d9e5c90ac7dc665db03e0c134fd23930d6fe7168e3fd48a7899a/damona-0.5.3.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.3 2023-06-21T07:53:50,237 Found link https://files.pythonhosted.org/packages/94/69/89c64bbc8ccd86ac96042fd140a8c0a39f0168d685f82445361e46d64734/damona-0.5.4.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.4 2023-06-21T07:53:50,238 Found link https://files.pythonhosted.org/packages/c0/d8/0edd345b42fb10ec5615463a6362c71abbf7182ae0a64a366586a752924a/damona-0.5.5.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.5 2023-06-21T07:53:50,239 Found link https://files.pythonhosted.org/packages/21/64/ec1a9f94d2727191a6b09dddbf464cb190a1c94a7016f5b7d0db7c6ab65a/damona-0.6.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.6.0 2023-06-21T07:53:50,239 Found link https://files.pythonhosted.org/packages/02/98/e4f8fb789585c125ad574845a8f43b6996b97979995cf77f088b6e166a57/damona-0.7.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.7.0 2023-06-21T07:53:50,240 Found link https://files.pythonhosted.org/packages/3d/af/463f5754f4f79152d2ca30c232f95364848b6eccc4e8da0bcd039797c13f/damona-0.7.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.7.1 2023-06-21T07:53:50,241 Found link https://files.pythonhosted.org/packages/b3/e4/7c0cb559030b0a10ef0b8b0e89778fee71357d01c681ff3a8e31633f139f/damona-0.8.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.8.0 2023-06-21T07:53:50,242 Found link https://files.pythonhosted.org/packages/64/52/7792503fca117af6cd5b401c8cc162c24b1b066630c398d104a9bf1edef8/damona-0.8.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.8.1 2023-06-21T07:53:50,242 Found link https://files.pythonhosted.org/packages/b9/71/804fbd1dafb4f7a2789494ce99f747050496509ba9c7b4ab750c2a1d15cc/damona-0.8.2.tar.gz (from https://pypi.org/simple/damona/), version: 0.8.2 2023-06-21T07:53:50,243 Found link https://files.pythonhosted.org/packages/74/c1/7e180bf7870c0ab1a09a753eec3dab56a3ab1537d33dc20e4a3862834654/damona-0.8.3.tar.gz (from https://pypi.org/simple/damona/), version: 0.8.3 2023-06-21T07:53:50,244 Found link https://files.pythonhosted.org/packages/95/92/8f20d85d858e9cf92c5e0a113d38f0d8df6517cc55fbe811c54851fb20bd/damona-0.9.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.9.0 2023-06-21T07:53:50,245 Fetching project page and analyzing links: https://www.piwheels.org/simple/damona/ 2023-06-21T07:53:50,245 Getting page https://www.piwheels.org/simple/damona/ 2023-06-21T07:53:50,248 Found index url https://www.piwheels.org/simple/ 2023-06-21T07:53:50,534 Fetched page https://www.piwheels.org/simple/damona/ as text/html 2023-06-21T07:53:50,550 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.8.3-py3-none-any.whl#sha256=458347800886c1754d51140bd9b3445568dee3e2fe0cacb1655fadf63666acec (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,551 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.8.2-py3-none-any.whl#sha256=cb1d248f7ca0e043cca2bb9abbe636b6dfc45f4c9dee9ab49505e014ab23cd84 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,552 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.8.1-py3-none-any.whl#sha256=1876dc816c6b55bdd4e26c3d55f550985eaaece2dd0b51e91198fcb9e23a6bce (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,552 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.8.0-py3-none-any.whl#sha256=2e21d72a65141ba9d76a6971a8d8c1618964ddc7b0e126ea8282260b974c3b65 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,553 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.7.1-py3-none-any.whl#sha256=5e66c86b9d54bddb8e202de5271f8eee2126fee535b1d9907ff06574405c9ee5 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,553 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.7.0-py3-none-any.whl#sha256=5042f04e5365017dbee446034c186e0e74a6e10e69b97159d4e7583d6eb978b8 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,554 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.6.0-py3-none-any.whl#sha256=0c08f84a6315a8a73a113852e981e28107e73b00ea14400876449661d4f4f5ff (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,554 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.5-py3-none-any.whl#sha256=250ccf2df08abd139089d4fb2e79006e5bd203c3a0a52f44d1f9284a73f0d925 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,555 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.4-py3-none-any.whl#sha256=d6be5e498a49e3228ff56e0445cf57642d10bfb8a523b4f6839f5998051feb50 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,555 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.3-py3-none-any.whl#sha256=c4e616966557b5bdf1adb7658f29a695e17d0f74b00c292ec912da0a37907ba8 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,556 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.2-py3-none-any.whl#sha256=96b9d98f2692a8ed1bd3d044f9cbd041d99762fcc2003f9e4c657e7bb885a061 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,556 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.1-py3-none-any.whl#sha256=5a3fb6b370b13c5085238e60671c083d51b2afa8ca94314f8c382b46b4fecc0a (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,557 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.0-py3-none-any.whl#sha256=2b105c2097bf8572e7d57f7b842123852413d4d1266886b21d4f1e94b0d25109 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,557 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.3-py3-none-any.whl#sha256=7b05aa70e5bb4664074b7b3d9b63873f9aa72e29217bf7a971614685c338107e (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,558 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.2-py3-none-any.whl#sha256=326ee5f5e021f463128cc57ff6f3ff6129f46271dfaf4f823a5645f2e94d7aa4 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,558 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.1-py3-none-any.whl#sha256=87fafcd2a349a2c12e3f28edb48015a402a3e50f89c4da8072167483d0d7a200 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,559 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.0-py3-none-any.whl#sha256=131eb91e5a14664d9a717ad2a12025787ed02a761336318d57de6076bbfe0695 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,559 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.3.1-py3-none-any.whl#sha256=934799d1cf5a920bc199416dc79952e268359cc4ad20d561571fd85e4c2d84dc (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,560 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.3.0-py3-none-any.whl#sha256=b9bad2b5e81d6bdca4b895a2d7dfcd19a5450509889904d9840f447a3a5a5f11 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,560 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.2.2-py3-none-any.whl#sha256=9165891e105689e76d95ddf46067837a1ee8b13d1d3af36b5af846c1b8ee4b92 (from https://www.piwheels.org/simple/damona/) 2023-06-21T07:53:50,561 Skipping link: not a file: https://www.piwheels.org/simple/damona/ 2023-06-21T07:53:50,562 Skipping link: not a file: https://pypi.org/simple/damona/ 2023-06-21T07:53:50,603 Given no hashes to check 1 links for project 'damona': discarding no candidates 2023-06-21T07:53:50,638 Collecting damona==0.9.0 2023-06-21T07:53:50,643 Created temporary directory: /tmp/pip-unpack-m1eqntp2 2023-06-21T07:53:50,825 Downloading damona-0.9.0.tar.gz (470 kB) 2023-06-21T07:53:52,295 Added damona==0.9.0 from https://files.pythonhosted.org/packages/95/92/8f20d85d858e9cf92c5e0a113d38f0d8df6517cc55fbe811c54851fb20bd/damona-0.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-j900lgn3' 2023-06-21T07:53:52,298 Running setup.py (path:/tmp/pip-wheel-0rf0bzk2/damona_1eda80ef8a8746a9a3b70607d315a0fd/setup.py) egg_info for package damona 2023-06-21T07:53:52,299 Created temporary directory: /tmp/pip-pip-egg-info-_9_eh0la 2023-06-21T07:53:52,300 Preparing metadata (setup.py): started 2023-06-21T07:53:52,302 Running command python setup.py egg_info 2023-06-21T07:53:54,594 running egg_info 2023-06-21T07:53:54,596 creating /tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info 2023-06-21T07:53:54,660 writing /tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info/PKG-INFO 2023-06-21T07:53:54,667 writing dependency_links to /tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info/dependency_links.txt 2023-06-21T07:53:54,671 writing entry points to /tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info/entry_points.txt 2023-06-21T07:53:54,674 writing requirements to /tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info/requires.txt 2023-06-21T07:53:54,676 writing top-level names to /tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info/top_level.txt 2023-06-21T07:53:54,679 writing manifest file '/tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info/SOURCES.txt' 2023-06-21T07:53:55,028 reading manifest file '/tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info/SOURCES.txt' 2023-06-21T07:53:55,031 reading manifest template 'MANIFEST.in' 2023-06-21T07:53:55,035 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-06-21T07:53:55,038 warning: no previously-included files matching '*pyc' found under directory '*' 2023-06-21T07:53:55,040 warning: no previously-included files matching 'test' found under directory '*' 2023-06-21T07:53:55,044 warning: no files found matching '.requirements_dev.txt' 2023-06-21T07:53:55,047 no previously-included directories found matching 'test' 2023-06-21T07:53:55,049 no previously-included directories found matching 'doc' 2023-06-21T07:53:55,049 adding license file 'LICENSE' 2023-06-21T07:53:55,072 writing manifest file '/tmp/pip-pip-egg-info-_9_eh0la/damona.egg-info/SOURCES.txt' 2023-06-21T07:53:55,234 Preparing metadata (setup.py): finished with status 'done' 2023-06-21T07:53:55,252 Source in /tmp/pip-wheel-0rf0bzk2/damona_1eda80ef8a8746a9a3b70607d315a0fd has version 0.9.0, which satisfies requirement damona==0.9.0 from https://files.pythonhosted.org/packages/95/92/8f20d85d858e9cf92c5e0a113d38f0d8df6517cc55fbe811c54851fb20bd/damona-0.9.0.tar.gz 2023-06-21T07:53:55,254 Removed damona==0.9.0 from https://files.pythonhosted.org/packages/95/92/8f20d85d858e9cf92c5e0a113d38f0d8df6517cc55fbe811c54851fb20bd/damona-0.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-j900lgn3' 2023-06-21T07:53:55,268 Created temporary directory: /tmp/pip-unpack-uv071vzg 2023-06-21T07:53:55,269 Building wheels for collected packages: damona 2023-06-21T07:53:55,278 Created temporary directory: /tmp/pip-wheel-msw2zf0e 2023-06-21T07:53:55,279 Building wheel for damona (setup.py): started 2023-06-21T07:53:55,281 Destination directory: /tmp/pip-wheel-msw2zf0e 2023-06-21T07:53:55,281 Running command python setup.py bdist_wheel 2023-06-21T07:53:57,609 running bdist_wheel 2023-06-21T07:53:58,381 running build 2023-06-21T07:53:58,382 running build_py 2023-06-21T07:53:58,455 creating build 2023-06-21T07:53:58,456 creating build/lib 2023-06-21T07:53:58,458 creating build/lib/damona 2023-06-21T07:53:58,460 copying damona/common.py -> build/lib/damona 2023-06-21T07:53:58,466 copying damona/install.py -> build/lib/damona 2023-06-21T07:53:58,472 copying damona/zenodo.py -> build/lib/damona 2023-06-21T07:53:58,477 copying damona/admin.py -> build/lib/damona 2023-06-21T07:53:58,481 copying damona/environ.py -> build/lib/damona 2023-06-21T07:53:58,486 copying damona/script.py -> build/lib/damona 2023-06-21T07:53:58,492 copying damona/config.py -> build/lib/damona 2023-06-21T07:53:58,497 copying damona/utils.py -> build/lib/damona 2023-06-21T07:53:58,501 copying damona/builders.py -> build/lib/damona 2023-06-21T07:53:58,505 copying damona/__init__.py -> build/lib/damona 2023-06-21T07:53:58,509 copying damona/registry.py -> build/lib/damona 2023-06-21T07:53:58,516 creating build/lib/damona/library 2023-06-21T07:53:58,517 copying damona/library/__init__.py -> build/lib/damona/library 2023-06-21T07:53:58,523 creating build/lib/damona/shell 2023-06-21T07:53:58,525 copying damona/shell/__init__.py -> build/lib/damona/shell 2023-06-21T07:53:58,529 creating build/lib/damona/papers 2023-06-21T07:53:58,531 copying damona/papers/__init__.py -> build/lib/damona/papers 2023-06-21T07:53:58,536 creating build/lib/damona/software 2023-06-21T07:53:58,538 copying damona/software/__init__.py -> build/lib/damona/software 2023-06-21T07:53:58,542 creating build/lib/damona/biocontainers 2023-06-21T07:53:58,544 copying damona/biocontainers/__init__.py -> build/lib/damona/biocontainers 2023-06-21T07:53:58,548 creating build/lib/damona/shell/bash 2023-06-21T07:53:58,550 copying damona/shell/bash/__init__.py -> build/lib/damona/shell/bash 2023-06-21T07:53:58,682 creating build/lib/damona/library/ubuntu 2023-06-21T07:53:58,683 copying damona/library/ubuntu/Singularity.ubuntu_16.04 -> build/lib/damona/library/ubuntu 2023-06-21T07:53:58,688 copying damona/library/ubuntu/Singularity.ubuntu_18.04 -> build/lib/damona/library/ubuntu 2023-06-21T07:53:58,692 creating build/lib/damona/library/micromamba 2023-06-21T07:53:58,694 copying damona/library/micromamba/Singularity.micromamba_1.4.3 -> build/lib/damona/library/micromamba 2023-06-21T07:53:58,698 creating build/lib/damona/library/rust 2023-06-21T07:53:58,700 copying damona/library/rust/Singularity.rust -> build/lib/damona/library/rust 2023-06-21T07:53:58,704 creating build/lib/damona/library/conda 2023-06-21T07:53:58,706 copying damona/library/conda/Singularity.conda_4.9.3 -> build/lib/damona/library/conda 2023-06-21T07:53:58,710 copying damona/library/conda/Singularity.conda_23.5.0 -> build/lib/damona/library/conda 2023-06-21T07:53:58,714 copying damona/library/conda/Singularity.conda_4.9.2 -> build/lib/damona/library/conda 2023-06-21T07:53:58,718 copying damona/library/conda/Singularity.conda_4.7.12 -> build/lib/damona/library/conda 2023-06-21T07:53:58,723 creating build/lib/damona/library/R 2023-06-21T07:53:58,725 copying damona/library/R/Singularity.R_3.6.3 -> build/lib/damona/library/R 2023-06-21T07:53:58,729 copying damona/library/R/Singularity.R_4.0.2 -> build/lib/damona/library/R 2023-06-21T07:53:58,734 copying damona/library/ubuntu/registry.yaml -> build/lib/damona/library/ubuntu 2023-06-21T07:53:58,739 copying damona/library/micromamba/registry.yaml -> build/lib/damona/library/micromamba 2023-06-21T07:53:58,744 copying damona/library/conda/registry.yaml -> build/lib/damona/library/conda 2023-06-21T07:53:58,748 copying damona/library/R/registry.yaml -> build/lib/damona/library/R 2023-06-21T07:53:58,753 copying damona/shell/bash/damona.sh -> build/lib/damona/shell/bash 2023-06-21T07:53:58,759 creating build/lib/damona/shell/fish 2023-06-21T07:53:58,762 copying damona/shell/fish/damona.fish -> build/lib/damona/shell/fish 2023-06-21T07:53:58,767 creating build/lib/damona/software/picard 2023-06-21T07:53:58,769 copying damona/software/picard/Singularity.picard_2.26 -> build/lib/damona/software/picard 2023-06-21T07:53:58,774 creating build/lib/damona/software/sequana_perl_tools 2023-06-21T07:53:58,776 copying damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.3.0 -> build/lib/damona/software/sequana_perl_tools 2023-06-21T07:53:58,782 copying damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.2.0 -> build/lib/damona/software/sequana_perl_tools 2023-06-21T07:53:58,787 copying damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0 -> build/lib/damona/software/sequana_perl_tools 2023-06-21T07:53:58,791 creating build/lib/damona/software/art 2023-06-21T07:53:58,794 copying damona/software/art/Singularity.art_3.11.14 -> build/lib/damona/software/art 2023-06-21T07:53:58,799 copying damona/software/art/Singularity.art_2.5.8 -> build/lib/damona/software/art 2023-06-21T07:53:58,803 creating build/lib/damona/software/phantompeakqualtools 2023-06-21T07:53:58,806 copying damona/software/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/lib/damona/software/phantompeakqualtools 2023-06-21T07:53:58,811 creating build/lib/damona/software/pangolin 2023-06-21T07:53:58,813 copying damona/software/pangolin/Singularity.pangolin_4.3.0 -> build/lib/damona/software/pangolin 2023-06-21T07:53:58,818 creating build/lib/damona/software/sequana_minimal 2023-06-21T07:53:58,820 copying damona/software/sequana_minimal/Singularity.sequana_minimal_23.6.13 -> build/lib/damona/software/sequana_minimal 2023-06-21T07:53:58,825 creating build/lib/damona/software/pigz 2023-06-21T07:53:58,828 copying damona/software/pigz/Singularity.pigz_2.4.0 -> build/lib/damona/software/pigz 2023-06-21T07:53:58,832 creating build/lib/damona/software/sequana_ribofinder 2023-06-21T07:53:58,835 copying damona/software/sequana_ribofinder/Singularity.sequana_ribofinder_0.12.0 -> build/lib/damona/software/sequana_ribofinder 2023-06-21T07:53:58,840 creating build/lib/damona/software/ucsc 2023-06-21T07:53:58,842 copying damona/software/ucsc/Singularity.ucsc_3.7.7 -> build/lib/damona/software/ucsc 2023-06-21T07:53:58,847 creating build/lib/damona/software/idr 2023-06-21T07:53:58,849 copying damona/software/idr/Singularity.idr_2.0.3 -> build/lib/damona/software/idr 2023-06-21T07:53:58,854 creating build/lib/damona/software/bioconvert 2023-06-21T07:53:58,856 copying damona/software/bioconvert/Singularity.bioconvert_0.6.2 -> build/lib/damona/software/bioconvert 2023-06-21T07:53:58,862 copying damona/software/bioconvert/Singularity.bioconvert_1.0.0 -> build/lib/damona/software/bioconvert 2023-06-21T07:53:58,866 copying damona/software/bioconvert/Singularity.bioconvert_0.6.1 -> build/lib/damona/software/bioconvert 2023-06-21T07:53:58,871 copying damona/software/bioconvert/Singularity.bioconvert_0.6.3 -> build/lib/damona/software/bioconvert 2023-06-21T07:53:58,876 creating build/lib/damona/software/seqkit 2023-06-21T07:53:58,877 copying damona/software/seqkit/Singularity.seqkit_2.1.0 -> build/lib/damona/software/seqkit 2023-06-21T07:53:58,882 copying damona/software/seqkit/Singularity.seqkit_2.4.0 -> build/lib/damona/software/seqkit 2023-06-21T07:53:58,886 creating build/lib/damona/software/rtools 2023-06-21T07:53:58,887 copying damona/software/rtools/Singularity.rtools_1.1.0 -> build/lib/damona/software/rtools 2023-06-21T07:53:58,891 copying damona/software/rtools/Singularity.rtools_1.0.0 -> build/lib/damona/software/rtools 2023-06-21T07:53:58,895 copying damona/software/rtools/Singularity.rtools_1.2.0 -> build/lib/damona/software/rtools 2023-06-21T07:53:58,899 creating build/lib/damona/software/salmon 2023-06-21T07:53:58,901 copying damona/software/salmon/Singularity.salmon_1.3.0 -> build/lib/damona/software/salmon 2023-06-21T07:53:58,905 creating build/lib/damona/software/igvtools 2023-06-21T07:53:58,907 copying damona/software/igvtools/Singularity.igvtools_2.12.0 -> build/lib/damona/software/igvtools 2023-06-21T07:53:58,911 creating build/lib/damona/software/samtools 2023-06-21T07:53:58,913 copying damona/software/samtools/Singularity.samtools_1.15.0 -> build/lib/damona/software/samtools 2023-06-21T07:53:58,917 copying damona/software/samtools/Singularity.samtools_1.16.1 -> build/lib/damona/software/samtools 2023-06-21T07:53:58,921 creating build/lib/damona/software/homer 2023-06-21T07:53:58,923 copying damona/software/homer/Singularity.homer_4.11.0 -> build/lib/damona/software/homer 2023-06-21T07:53:58,927 creating build/lib/damona/software/medaka 2023-06-21T07:53:58,929 copying damona/software/medaka/Singularity.medaka_1.7.3 -> build/lib/damona/software/medaka 2023-06-21T07:53:58,933 creating build/lib/damona/software/subread 2023-06-21T07:53:58,935 copying damona/software/subread/Singularity.subread_2.0.3 -> build/lib/damona/software/subread 2023-06-21T07:53:58,939 creating build/lib/damona/software/bamtools 2023-06-21T07:53:58,941 copying damona/software/bamtools/Singularity.bamtools_2.5.2 -> build/lib/damona/software/bamtools 2023-06-21T07:53:58,945 creating build/lib/damona/software/prokka 2023-06-21T07:53:58,946 copying damona/software/prokka/Singularity.prokka_1.14.6 -> build/lib/damona/software/prokka 2023-06-21T07:53:58,951 copying damona/software/prokka/Singularity.prokka_1.14.5 -> build/lib/damona/software/prokka 2023-06-21T07:53:58,955 creating build/lib/damona/software/hifiasm 2023-06-21T07:53:58,957 copying damona/software/hifiasm/Singularity.hifiasm_0.19.1 -> build/lib/damona/software/hifiasm 2023-06-21T07:53:58,961 creating build/lib/damona/software/circlator 2023-06-21T07:53:58,963 copying damona/software/circlator/Singularity.circlator_1.5.5 -> build/lib/damona/software/circlator 2023-06-21T07:53:58,967 creating build/lib/damona/software/bwa 2023-06-21T07:53:58,969 copying damona/software/bwa/Singularity.bwa_0.7.17 -> build/lib/damona/software/bwa 2023-06-21T07:53:58,973 copying damona/software/bwa/Singularity.bwa_mamba_0.7.17 -> build/lib/damona/software/bwa 2023-06-21T07:53:58,977 creating build/lib/damona/software/pycoqc 2023-06-21T07:53:58,979 copying damona/software/pycoqc/Singularity.pycoqc_2.5.2 -> build/lib/damona/software/pycoqc 2023-06-21T07:53:58,983 creating build/lib/damona/software/fastqc 2023-06-21T07:53:58,985 copying damona/software/fastqc/Singularity.fastqc_0.12.1 -> build/lib/damona/software/fastqc 2023-06-21T07:53:58,989 copying damona/software/fastqc/Singularity.fastqc_0.11.9 -> build/lib/damona/software/fastqc 2023-06-21T07:53:58,993 copying damona/software/fastqc/Singularity.fastqc_0.11.9_py3 -> build/lib/damona/software/fastqc 2023-06-21T07:53:58,997 copying damona/software/fastqc/Singularity.fastqc_0.11.8 -> build/lib/damona/software/fastqc 2023-06-21T07:53:59,001 creating build/lib/damona/software/mergegi 2023-06-21T07:53:59,003 copying damona/software/mergegi/Singularity.mergegi_0.0.1 -> build/lib/damona/software/mergegi 2023-06-21T07:53:59,007 creating build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,009 copying damona/software/sequana_tools/Singularity.sequana_tools_23.6.13 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,013 copying damona/software/sequana_tools/Singularity.sequana_tools_0.11.0 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,017 copying damona/software/sequana_tools/Singularity.sequana_tools_0.10.0 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,022 copying damona/software/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,026 copying damona/software/sequana_tools/Singularity.sequana_tools_0.14.3 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,030 copying damona/software/sequana_tools/Singularity.sequana_tools_0.14.5 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,034 copying damona/software/sequana_tools/Singularity.sequana_tools_0.15.1 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,038 copying damona/software/sequana_tools/Singularity.sequana_tools_0.12.0 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,042 copying damona/software/sequana_tools/Singularity.sequana_tools_0.14.1 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,046 copying damona/software/sequana_tools/Singularity.sequana_tools_0.14.2 -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,050 creating build/lib/damona/software/sequana 2023-06-21T07:53:59,052 copying damona/software/sequana/Singularity.sequana_0.12.6 -> build/lib/damona/software/sequana 2023-06-21T07:53:59,057 copying damona/software/sequana/Singularity.sequana_0.14.6 -> build/lib/damona/software/sequana 2023-06-21T07:53:59,060 copying damona/software/sequana/Singularity.sequana_0.15.0 -> build/lib/damona/software/sequana 2023-06-21T07:53:59,065 creating build/lib/damona/software/graphviz 2023-06-21T07:53:59,066 copying damona/software/graphviz/Singularity.graphviz_7.0.5 -> build/lib/damona/software/graphviz 2023-06-21T07:53:59,071 copying damona/software/graphviz/Singularity.graphviz_2.43.0 -> build/lib/damona/software/graphviz 2023-06-21T07:53:59,075 creating build/lib/damona/software/trf 2023-06-21T07:53:59,076 copying damona/software/trf/Singularity.trf_4.10.0 -> build/lib/damona/software/trf 2023-06-21T07:53:59,080 creating build/lib/damona/software/pbbam 2023-06-21T07:53:59,082 copying damona/software/pbbam/Singularity.pbbam_2.1.0 -> build/lib/damona/software/pbbam 2023-06-21T07:53:59,086 copying damona/software/pbbam/Singularity.pbbam_2.3.0 -> build/lib/damona/software/pbbam 2023-06-21T07:53:59,090 creating build/lib/damona/software/canu 2023-06-21T07:53:59,092 copying damona/software/canu/Singularity.canu_1.6.0 -> build/lib/damona/software/canu 2023-06-21T07:53:59,097 copying damona/software/canu/Singularity.canu_2.1.1 -> build/lib/damona/software/canu 2023-06-21T07:53:59,100 copying damona/software/canu/Singularity.canu_1.8.0 -> build/lib/damona/software/canu 2023-06-21T07:53:59,104 creating build/lib/damona/software/ivar 2023-06-21T07:53:59,106 copying damona/software/ivar/Singularity.ivar_1.3.1 -> build/lib/damona/software/ivar 2023-06-21T07:53:59,110 creating build/lib/damona/software/gzip 2023-06-21T07:53:59,112 copying damona/software/gzip/Singularity.gzip_1.9.0 -> build/lib/damona/software/gzip 2023-06-21T07:53:59,116 creating build/lib/damona/software/busco 2023-06-21T07:53:59,117 copying damona/software/busco/Singularity.busco_5.4.6 -> build/lib/damona/software/busco 2023-06-21T07:53:59,122 creating build/lib/damona/software/raxml 2023-06-21T07:53:59,124 copying damona/software/raxml/Singularity.raxml_8.2.12 -> build/lib/damona/software/raxml 2023-06-21T07:53:59,128 creating build/lib/damona/software/rnadiff 2023-06-21T07:53:59,130 copying damona/software/rnadiff/Singularity.rnadiff_1.7.1 -> build/lib/damona/software/rnadiff 2023-06-21T07:53:59,134 creating build/lib/damona/software/polypolish 2023-06-21T07:53:59,136 copying damona/software/polypolish/Singularity.polypolish_0.5.0 -> build/lib/damona/software/polypolish 2023-06-21T07:53:59,140 creating build/lib/damona/software/gffread 2023-06-21T07:53:59,141 copying damona/software/gffread/Singularity.gffread_0.12.1 -> build/lib/damona/software/gffread 2023-06-21T07:53:59,146 copying damona/software/gffread/Singularity.gffread_0.12.7 -> build/lib/damona/software/gffread 2023-06-21T07:53:59,149 creating build/lib/damona/software/blast 2023-06-21T07:53:59,151 copying damona/software/blast/Singularity.blast_2.12.0 -> build/lib/damona/software/blast 2023-06-21T07:53:59,156 creating build/lib/damona/software/shustring 2023-06-21T07:53:59,157 copying damona/software/shustring/Singularity.shustring_2.6.0 -> build/lib/damona/software/shustring 2023-06-21T07:53:59,162 creating build/lib/damona/software/mafft 2023-06-21T07:53:59,163 copying damona/software/mafft/Singularity.mafft_7.520.0 -> build/lib/damona/software/mafft 2023-06-21T07:53:59,167 creating build/lib/damona/software/nextclade 2023-06-21T07:53:59,169 copying damona/software/nextclade/Singularity.nextclade_2.15.0 -> build/lib/damona/software/nextclade 2023-06-21T07:53:59,173 creating build/lib/damona/software/bedtools 2023-06-21T07:53:59,175 copying damona/software/bedtools/Singularity.bedtools_2.30.0 -> build/lib/damona/software/bedtools 2023-06-21T07:53:59,179 creating build/lib/damona/software/RIPseeker 2023-06-21T07:53:59,181 copying damona/software/RIPseeker/Singularity.RIPseeker_1.0.0 -> build/lib/damona/software/RIPseeker 2023-06-21T07:53:59,185 creating build/lib/damona/software/falco 2023-06-21T07:53:59,187 copying damona/software/falco/Singularity.falco_0.2.1 -> build/lib/damona/software/falco 2023-06-21T07:53:59,191 copying damona/software/falco/Singularity.falco_1.0.0 -> build/lib/damona/software/falco 2023-06-21T07:53:59,195 creating build/lib/damona/software/sequana_denovo 2023-06-21T07:53:59,197 copying damona/software/sequana_denovo/Singularity.sequana_denovo_0.0.2 -> build/lib/damona/software/sequana_denovo 2023-06-21T07:53:59,201 creating build/lib/damona/software/fastp 2023-06-21T07:53:59,203 copying damona/software/fastp/Singularity.fastp_0.23.3 -> build/lib/damona/software/fastp 2023-06-21T07:53:59,207 copying damona/software/fastp/Singularity.fastp_0.23.2 -> build/lib/damona/software/fastp 2023-06-21T07:53:59,211 creating build/lib/damona/software/kraken 2023-06-21T07:53:59,213 copying damona/software/kraken/Singularity.kraken_2.0.9 -> build/lib/damona/software/kraken 2023-06-21T07:53:59,217 copying damona/software/kraken/Singularity.kraken_1.1.0 -> build/lib/damona/software/kraken 2023-06-21T07:53:59,221 creating build/lib/damona/software/quast 2023-06-21T07:53:59,222 copying damona/software/quast/Singularity.quast_5.2.0 -> build/lib/damona/software/quast 2023-06-21T07:53:59,227 copying damona/software/quast/Singularity.quast_5.0.2 -> build/lib/damona/software/quast 2023-06-21T07:53:59,230 creating build/lib/damona/software/flye 2023-06-21T07:53:59,232 copying damona/software/flye/Singularity.flye_2.9.0 -> build/lib/damona/software/flye 2023-06-21T07:53:59,236 copying damona/software/flye/Singularity.flye_2.9.1 -> build/lib/damona/software/flye 2023-06-21T07:53:59,240 creating build/lib/damona/software/seqtk 2023-06-21T07:53:59,241 copying damona/software/seqtk/Singularity.seqtk_1.3.0 -> build/lib/damona/software/seqtk 2023-06-21T07:53:59,245 creating build/lib/damona/software/vt 2023-06-21T07:53:59,247 copying damona/software/vt/Singularity.vt_0.57721.0 -> build/lib/damona/software/vt 2023-06-21T07:53:59,251 creating build/lib/damona/software/bowtie 2023-06-21T07:53:59,253 copying damona/software/bowtie/Singularity.bowtie_1.3.1 -> build/lib/damona/software/bowtie 2023-06-21T07:53:59,257 creating build/lib/damona/software/minimap2 2023-06-21T07:53:59,258 copying damona/software/minimap2/Singularity.minimap2_2.24.0 -> build/lib/damona/software/minimap2 2023-06-21T07:53:59,262 copying damona/software/minimap2/Singularity.minimap2_2.23.0 -> build/lib/damona/software/minimap2 2023-06-21T07:53:59,266 copying damona/software/minimap2/Singularity.minimap2_2.17.0 -> build/lib/damona/software/minimap2 2023-06-21T07:53:59,270 creating build/lib/damona/software/rnaseqc 2023-06-21T07:53:59,272 copying damona/software/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/lib/damona/software/rnaseqc 2023-06-21T07:53:59,276 creating build/lib/damona/software/bbtools 2023-06-21T07:53:59,278 copying damona/software/bbtools/Singularity.bbtools_38.94.0 -> build/lib/damona/software/bbtools 2023-06-21T07:53:59,282 creating build/lib/damona/software/snpeff 2023-06-21T07:53:59,283 copying damona/software/snpeff/Singularity.snpeff_5.0.0 -> build/lib/damona/software/snpeff 2023-06-21T07:53:59,287 copying damona/software/snpeff/Singularity.snpeff_5.1.0 -> build/lib/damona/software/snpeff 2023-06-21T07:53:59,291 creating build/lib/damona/software/samtools_minimap2 2023-06-21T07:53:59,293 copying damona/software/samtools_minimap2/Singularity.samtools_1.17_minimap2_2.24.0 -> build/lib/damona/software/samtools_minimap2 2023-06-21T07:53:59,297 creating build/lib/damona/software/ccs 2023-06-21T07:53:59,299 copying damona/software/ccs/Singularity.ccs_6.4.0 -> build/lib/damona/software/ccs 2023-06-21T07:53:59,303 creating build/lib/damona/software/bcl2fastq 2023-06-21T07:53:59,305 copying damona/software/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/lib/damona/software/bcl2fastq 2023-06-21T07:53:59,309 creating build/lib/damona/software/bowtie2 2023-06-21T07:53:59,310 copying damona/software/bowtie2/Singularity.bowtie2_2.4.2 -> build/lib/damona/software/bowtie2 2023-06-21T07:53:59,315 copying damona/software/bowtie2/Singularity.bowtie2_2.3.4 -> build/lib/damona/software/bowtie2 2023-06-21T07:53:59,319 creating build/lib/damona/software/cellranger 2023-06-21T07:53:59,320 copying damona/software/cellranger/Singularity.cellranger_7.1.0 -> build/lib/damona/software/cellranger 2023-06-21T07:53:59,324 copying damona/software/sequana_perl_tools/registry.yaml -> build/lib/damona/software/sequana_perl_tools 2023-06-21T07:53:59,329 copying damona/software/art/registry.yaml -> build/lib/damona/software/art 2023-06-21T07:53:59,333 copying damona/software/phantompeakqualtools/registry.yaml -> build/lib/damona/software/phantompeakqualtools 2023-06-21T07:53:59,337 copying damona/software/pangolin/registry.yaml -> build/lib/damona/software/pangolin 2023-06-21T07:53:59,341 copying damona/software/sequana_minimal/registry.yaml -> build/lib/damona/software/sequana_minimal 2023-06-21T07:53:59,345 copying damona/software/pigz/registry.yaml -> build/lib/damona/software/pigz 2023-06-21T07:53:59,348 copying damona/software/sequana_ribofinder/registry.yaml -> build/lib/damona/software/sequana_ribofinder 2023-06-21T07:53:59,352 copying damona/software/ucsc/registry.yaml -> build/lib/damona/software/ucsc 2023-06-21T07:53:59,356 copying damona/software/idr/registry.yaml -> build/lib/damona/software/idr 2023-06-21T07:53:59,360 copying damona/software/bioconvert/registry.yaml -> build/lib/damona/software/bioconvert 2023-06-21T07:53:59,363 copying damona/software/seqkit/registry.yaml -> build/lib/damona/software/seqkit 2023-06-21T07:53:59,367 copying damona/software/rtools/registry.yaml -> build/lib/damona/software/rtools 2023-06-21T07:53:59,372 copying damona/software/salmon/registry.yaml -> build/lib/damona/software/salmon 2023-06-21T07:53:59,376 copying damona/software/igvtools/registry.yaml -> build/lib/damona/software/igvtools 2023-06-21T07:53:59,380 copying damona/software/samtools/registry.yaml -> build/lib/damona/software/samtools 2023-06-21T07:53:59,384 copying damona/software/homer/registry.yaml -> build/lib/damona/software/homer 2023-06-21T07:53:59,388 copying damona/software/medaka/registry.yaml -> build/lib/damona/software/medaka 2023-06-21T07:53:59,392 copying damona/software/subread/registry.yaml -> build/lib/damona/software/subread 2023-06-21T07:53:59,396 copying damona/software/bamtools/registry.yaml -> build/lib/damona/software/bamtools 2023-06-21T07:53:59,400 copying damona/software/prokka/registry.yaml -> build/lib/damona/software/prokka 2023-06-21T07:53:59,404 copying damona/software/hifiasm/registry.yaml -> build/lib/damona/software/hifiasm 2023-06-21T07:53:59,408 copying damona/software/circlator/registry.yaml -> build/lib/damona/software/circlator 2023-06-21T07:53:59,413 copying damona/software/bwa/registry.yaml -> build/lib/damona/software/bwa 2023-06-21T07:53:59,417 copying damona/software/pycoqc/registry.yaml -> build/lib/damona/software/pycoqc 2023-06-21T07:53:59,421 copying damona/software/fastqc/registry.yaml -> build/lib/damona/software/fastqc 2023-06-21T07:53:59,425 copying damona/software/mergegi/registry.yaml -> build/lib/damona/software/mergegi 2023-06-21T07:53:59,429 copying damona/software/sequana_tools/registry.yaml -> build/lib/damona/software/sequana_tools 2023-06-21T07:53:59,434 copying damona/software/sequana/registry.yaml -> build/lib/damona/software/sequana 2023-06-21T07:53:59,438 copying damona/software/graphviz/registry.yaml -> build/lib/damona/software/graphviz 2023-06-21T07:53:59,442 copying damona/software/trf/registry.yaml -> build/lib/damona/software/trf 2023-06-21T07:53:59,446 copying damona/software/pbbam/registry.yaml -> build/lib/damona/software/pbbam 2023-06-21T07:53:59,450 copying damona/software/canu/registry.yaml -> build/lib/damona/software/canu 2023-06-21T07:53:59,455 copying damona/software/ivar/registry.yaml -> build/lib/damona/software/ivar 2023-06-21T07:53:59,458 copying damona/software/gzip/registry.yaml -> build/lib/damona/software/gzip 2023-06-21T07:53:59,462 copying damona/software/busco/registry.yaml -> build/lib/damona/software/busco 2023-06-21T07:53:59,466 copying damona/software/raxml/registry.yaml -> build/lib/damona/software/raxml 2023-06-21T07:53:59,471 copying damona/software/rnadiff/registry.yaml -> build/lib/damona/software/rnadiff 2023-06-21T07:53:59,475 copying damona/software/polypolish/registry.yaml -> build/lib/damona/software/polypolish 2023-06-21T07:53:59,479 creating build/lib/damona/software/hisat2 2023-06-21T07:53:59,480 copying damona/software/hisat2/registry.yaml -> build/lib/damona/software/hisat2 2023-06-21T07:53:59,484 copying damona/software/gffread/registry.yaml -> build/lib/damona/software/gffread 2023-06-21T07:53:59,488 copying damona/software/blast/registry.yaml -> build/lib/damona/software/blast 2023-06-21T07:53:59,493 copying damona/software/shustring/registry.yaml -> build/lib/damona/software/shustring 2023-06-21T07:53:59,497 copying damona/software/mafft/registry.yaml -> build/lib/damona/software/mafft 2023-06-21T07:53:59,501 copying damona/software/nextclade/registry.yaml -> build/lib/damona/software/nextclade 2023-06-21T07:53:59,505 copying damona/software/bedtools/registry.yaml -> build/lib/damona/software/bedtools 2023-06-21T07:53:59,509 copying damona/software/RIPseeker/registry.yaml -> build/lib/damona/software/RIPseeker 2023-06-21T07:53:59,513 copying damona/software/falco/registry.yaml -> build/lib/damona/software/falco 2023-06-21T07:53:59,517 copying damona/software/sequana_denovo/registry.yaml -> build/lib/damona/software/sequana_denovo 2023-06-21T07:53:59,521 copying damona/software/fastp/registry.yaml -> build/lib/damona/software/fastp 2023-06-21T07:53:59,525 copying damona/software/kraken/registry.yaml -> build/lib/damona/software/kraken 2023-06-21T07:53:59,529 copying damona/software/quast/registry.yaml -> build/lib/damona/software/quast 2023-06-21T07:53:59,533 copying damona/software/flye/registry.yaml -> build/lib/damona/software/flye 2023-06-21T07:53:59,538 copying damona/software/seqtk/registry.yaml -> build/lib/damona/software/seqtk 2023-06-21T07:53:59,542 copying damona/software/vt/registry.yaml -> build/lib/damona/software/vt 2023-06-21T07:53:59,546 copying damona/software/bowtie/registry.yaml -> build/lib/damona/software/bowtie 2023-06-21T07:53:59,550 copying damona/software/minimap2/registry.yaml -> build/lib/damona/software/minimap2 2023-06-21T07:53:59,554 copying damona/software/rnaseqc/registry.yaml -> build/lib/damona/software/rnaseqc 2023-06-21T07:53:59,558 copying damona/software/bbtools/registry.yaml -> build/lib/damona/software/bbtools 2023-06-21T07:53:59,562 copying damona/software/snpeff/registry.yaml -> build/lib/damona/software/snpeff 2023-06-21T07:53:59,567 copying damona/software/samtools_minimap2/registry.yaml -> build/lib/damona/software/samtools_minimap2 2023-06-21T07:53:59,571 copying damona/software/ccs/registry.yaml -> build/lib/damona/software/ccs 2023-06-21T07:53:59,575 copying damona/software/bcl2fastq/registry.yaml -> build/lib/damona/software/bcl2fastq 2023-06-21T07:53:59,579 copying damona/software/bowtie2/registry.yaml -> build/lib/damona/software/bowtie2 2023-06-21T07:53:59,583 copying damona/biocontainers/registry.yaml -> build/lib/damona/biocontainers 2023-06-21T07:53:59,774 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-06-21T07:53:59,775 !! 2023-06-21T07:53:59,776 ******************************************************************************** 2023-06-21T07:53:59,776 Please avoid running ``setup.py`` directly. 2023-06-21T07:53:59,776 Instead, use pypa/build, pypa/installer, pypa/build or 2023-06-21T07:53:59,777 other standards-based tools. 2023-06-21T07:53:59,778 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-06-21T07:53:59,778 ******************************************************************************** 2023-06-21T07:53:59,779 !! 2023-06-21T07:53:59,779 self.initialize_options() 2023-06-21T07:53:59,845 installing to build/bdist.linux-armv7l/wheel 2023-06-21T07:53:59,845 running install 2023-06-21T07:53:59,904 running install_lib 2023-06-21T07:53:59,974 creating build/bdist.linux-armv7l 2023-06-21T07:53:59,975 creating build/bdist.linux-armv7l/wheel 2023-06-21T07:53:59,979 creating build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:53:59,981 copying build/lib/damona/common.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:53:59,986 copying build/lib/damona/install.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:53:59,991 copying build/lib/damona/zenodo.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:53:59,997 creating build/bdist.linux-armv7l/wheel/damona/library 2023-06-21T07:54:00,000 creating build/bdist.linux-armv7l/wheel/damona/library/ubuntu 2023-06-21T07:54:00,002 copying build/lib/damona/library/ubuntu/Singularity.ubuntu_16.04 -> build/bdist.linux-armv7l/wheel/damona/library/ubuntu 2023-06-21T07:54:00,006 copying build/lib/damona/library/ubuntu/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/library/ubuntu 2023-06-21T07:54:00,010 copying build/lib/damona/library/ubuntu/Singularity.ubuntu_18.04 -> build/bdist.linux-armv7l/wheel/damona/library/ubuntu 2023-06-21T07:54:00,015 creating build/bdist.linux-armv7l/wheel/damona/library/micromamba 2023-06-21T07:54:00,016 copying build/lib/damona/library/micromamba/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/library/micromamba 2023-06-21T07:54:00,020 copying build/lib/damona/library/micromamba/Singularity.micromamba_1.4.3 -> build/bdist.linux-armv7l/wheel/damona/library/micromamba 2023-06-21T07:54:00,024 copying build/lib/damona/library/__init__.py -> build/bdist.linux-armv7l/wheel/damona/library 2023-06-21T07:54:00,028 creating build/bdist.linux-armv7l/wheel/damona/library/rust 2023-06-21T07:54:00,030 copying build/lib/damona/library/rust/Singularity.rust -> build/bdist.linux-armv7l/wheel/damona/library/rust 2023-06-21T07:54:00,035 creating build/bdist.linux-armv7l/wheel/damona/library/conda 2023-06-21T07:54:00,037 copying build/lib/damona/library/conda/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-06-21T07:54:00,041 copying build/lib/damona/library/conda/Singularity.conda_4.9.3 -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-06-21T07:54:00,044 copying build/lib/damona/library/conda/Singularity.conda_23.5.0 -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-06-21T07:54:00,048 copying build/lib/damona/library/conda/Singularity.conda_4.9.2 -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-06-21T07:54:00,052 copying build/lib/damona/library/conda/Singularity.conda_4.7.12 -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-06-21T07:54:00,056 creating build/bdist.linux-armv7l/wheel/damona/library/R 2023-06-21T07:54:00,058 copying build/lib/damona/library/R/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/library/R 2023-06-21T07:54:00,062 copying build/lib/damona/library/R/Singularity.R_3.6.3 -> build/bdist.linux-armv7l/wheel/damona/library/R 2023-06-21T07:54:00,065 copying build/lib/damona/library/R/Singularity.R_4.0.2 -> build/bdist.linux-armv7l/wheel/damona/library/R 2023-06-21T07:54:00,069 copying build/lib/damona/admin.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:54:00,075 creating build/bdist.linux-armv7l/wheel/damona/shell 2023-06-21T07:54:00,078 creating build/bdist.linux-armv7l/wheel/damona/shell/bash 2023-06-21T07:54:00,080 copying build/lib/damona/shell/bash/damona.sh -> build/bdist.linux-armv7l/wheel/damona/shell/bash 2023-06-21T07:54:00,085 copying build/lib/damona/shell/bash/__init__.py -> build/bdist.linux-armv7l/wheel/damona/shell/bash 2023-06-21T07:54:00,089 creating build/bdist.linux-armv7l/wheel/damona/shell/fish 2023-06-21T07:54:00,090 copying build/lib/damona/shell/fish/damona.fish -> build/bdist.linux-armv7l/wheel/damona/shell/fish 2023-06-21T07:54:00,094 copying build/lib/damona/shell/__init__.py -> build/bdist.linux-armv7l/wheel/damona/shell 2023-06-21T07:54:00,098 creating build/bdist.linux-armv7l/wheel/damona/papers 2023-06-21T07:54:00,100 copying build/lib/damona/papers/__init__.py -> build/bdist.linux-armv7l/wheel/damona/papers 2023-06-21T07:54:00,106 creating build/bdist.linux-armv7l/wheel/damona/software 2023-06-21T07:54:00,109 creating build/bdist.linux-armv7l/wheel/damona/software/picard 2023-06-21T07:54:00,111 copying build/lib/damona/software/picard/Singularity.picard_2.26 -> build/bdist.linux-armv7l/wheel/damona/software/picard 2023-06-21T07:54:00,116 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-06-21T07:54:00,118 copying build/lib/damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-06-21T07:54:00,122 copying build/lib/damona/software/sequana_perl_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-06-21T07:54:00,126 copying build/lib/damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.2.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-06-21T07:54:00,130 copying build/lib/damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-06-21T07:54:00,134 creating build/bdist.linux-armv7l/wheel/damona/software/art 2023-06-21T07:54:00,136 copying build/lib/damona/software/art/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/art 2023-06-21T07:54:00,140 copying build/lib/damona/software/art/Singularity.art_3.11.14 -> build/bdist.linux-armv7l/wheel/damona/software/art 2023-06-21T07:54:00,144 copying build/lib/damona/software/art/Singularity.art_2.5.8 -> build/bdist.linux-armv7l/wheel/damona/software/art 2023-06-21T07:54:00,148 creating build/bdist.linux-armv7l/wheel/damona/software/phantompeakqualtools 2023-06-21T07:54:00,150 copying build/lib/damona/software/phantompeakqualtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/phantompeakqualtools 2023-06-21T07:54:00,154 copying build/lib/damona/software/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/bdist.linux-armv7l/wheel/damona/software/phantompeakqualtools 2023-06-21T07:54:00,159 creating build/bdist.linux-armv7l/wheel/damona/software/pangolin 2023-06-21T07:54:00,160 copying build/lib/damona/software/pangolin/Singularity.pangolin_4.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/pangolin 2023-06-21T07:54:00,164 copying build/lib/damona/software/pangolin/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/pangolin 2023-06-21T07:54:00,169 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_minimal 2023-06-21T07:54:00,171 copying build/lib/damona/software/sequana_minimal/Singularity.sequana_minimal_23.6.13 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_minimal 2023-06-21T07:54:00,175 copying build/lib/damona/software/sequana_minimal/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_minimal 2023-06-21T07:54:00,179 creating build/bdist.linux-armv7l/wheel/damona/software/pigz 2023-06-21T07:54:00,181 copying build/lib/damona/software/pigz/Singularity.pigz_2.4.0 -> build/bdist.linux-armv7l/wheel/damona/software/pigz 2023-06-21T07:54:00,185 copying build/lib/damona/software/pigz/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/pigz 2023-06-21T07:54:00,190 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_ribofinder 2023-06-21T07:54:00,193 copying build/lib/damona/software/sequana_ribofinder/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_ribofinder 2023-06-21T07:54:00,197 copying build/lib/damona/software/sequana_ribofinder/Singularity.sequana_ribofinder_0.12.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_ribofinder 2023-06-21T07:54:00,202 creating build/bdist.linux-armv7l/wheel/damona/software/ucsc 2023-06-21T07:54:00,205 copying build/lib/damona/software/ucsc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/ucsc 2023-06-21T07:54:00,209 copying build/lib/damona/software/ucsc/Singularity.ucsc_3.7.7 -> build/bdist.linux-armv7l/wheel/damona/software/ucsc 2023-06-21T07:54:00,215 creating build/bdist.linux-armv7l/wheel/damona/software/idr 2023-06-21T07:54:00,217 copying build/lib/damona/software/idr/Singularity.idr_2.0.3 -> build/bdist.linux-armv7l/wheel/damona/software/idr 2023-06-21T07:54:00,222 copying build/lib/damona/software/idr/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/idr 2023-06-21T07:54:00,227 creating build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-06-21T07:54:00,229 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_0.6.2 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-06-21T07:54:00,234 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-06-21T07:54:00,238 copying build/lib/damona/software/bioconvert/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-06-21T07:54:00,243 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_0.6.1 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-06-21T07:54:00,247 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_0.6.3 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-06-21T07:54:00,252 creating build/bdist.linux-armv7l/wheel/damona/software/seqkit 2023-06-21T07:54:00,255 copying build/lib/damona/software/seqkit/Singularity.seqkit_2.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/seqkit 2023-06-21T07:54:00,259 copying build/lib/damona/software/seqkit/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/seqkit 2023-06-21T07:54:00,263 copying build/lib/damona/software/seqkit/Singularity.seqkit_2.4.0 -> build/bdist.linux-armv7l/wheel/damona/software/seqkit 2023-06-21T07:54:00,269 creating build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-06-21T07:54:00,271 copying build/lib/damona/software/rtools/Singularity.rtools_1.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-06-21T07:54:00,276 copying build/lib/damona/software/rtools/Singularity.rtools_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-06-21T07:54:00,280 copying build/lib/damona/software/rtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-06-21T07:54:00,285 copying build/lib/damona/software/rtools/Singularity.rtools_1.2.0 -> build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-06-21T07:54:00,290 creating build/bdist.linux-armv7l/wheel/damona/software/salmon 2023-06-21T07:54:00,292 copying build/lib/damona/software/salmon/Singularity.salmon_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/salmon 2023-06-21T07:54:00,297 copying build/lib/damona/software/salmon/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/salmon 2023-06-21T07:54:00,302 creating build/bdist.linux-armv7l/wheel/damona/software/igvtools 2023-06-21T07:54:00,305 copying build/lib/damona/software/igvtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/igvtools 2023-06-21T07:54:00,309 copying build/lib/damona/software/igvtools/Singularity.igvtools_2.12.0 -> build/bdist.linux-armv7l/wheel/damona/software/igvtools 2023-06-21T07:54:00,315 creating build/bdist.linux-armv7l/wheel/damona/software/samtools 2023-06-21T07:54:00,317 copying build/lib/damona/software/samtools/Singularity.samtools_1.15.0 -> build/bdist.linux-armv7l/wheel/damona/software/samtools 2023-06-21T07:54:00,321 copying build/lib/damona/software/samtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/samtools 2023-06-21T07:54:00,326 copying build/lib/damona/software/samtools/Singularity.samtools_1.16.1 -> build/bdist.linux-armv7l/wheel/damona/software/samtools 2023-06-21T07:54:00,331 creating build/bdist.linux-armv7l/wheel/damona/software/homer 2023-06-21T07:54:00,333 copying build/lib/damona/software/homer/Singularity.homer_4.11.0 -> build/bdist.linux-armv7l/wheel/damona/software/homer 2023-06-21T07:54:00,338 copying build/lib/damona/software/homer/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/homer 2023-06-21T07:54:00,343 creating build/bdist.linux-armv7l/wheel/damona/software/medaka 2023-06-21T07:54:00,345 copying build/lib/damona/software/medaka/Singularity.medaka_1.7.3 -> build/bdist.linux-armv7l/wheel/damona/software/medaka 2023-06-21T07:54:00,350 copying build/lib/damona/software/medaka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/medaka 2023-06-21T07:54:00,355 creating build/bdist.linux-armv7l/wheel/damona/software/subread 2023-06-21T07:54:00,357 copying build/lib/damona/software/subread/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/subread 2023-06-21T07:54:00,362 copying build/lib/damona/software/subread/Singularity.subread_2.0.3 -> build/bdist.linux-armv7l/wheel/damona/software/subread 2023-06-21T07:54:00,367 creating build/bdist.linux-armv7l/wheel/damona/software/bamtools 2023-06-21T07:54:00,370 copying build/lib/damona/software/bamtools/Singularity.bamtools_2.5.2 -> build/bdist.linux-armv7l/wheel/damona/software/bamtools 2023-06-21T07:54:00,374 copying build/lib/damona/software/bamtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bamtools 2023-06-21T07:54:00,379 creating build/bdist.linux-armv7l/wheel/damona/software/prokka 2023-06-21T07:54:00,382 copying build/lib/damona/software/prokka/Singularity.prokka_1.14.6 -> build/bdist.linux-armv7l/wheel/damona/software/prokka 2023-06-21T07:54:00,386 copying build/lib/damona/software/prokka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/prokka 2023-06-21T07:54:00,390 copying build/lib/damona/software/prokka/Singularity.prokka_1.14.5 -> build/bdist.linux-armv7l/wheel/damona/software/prokka 2023-06-21T07:54:00,396 creating build/bdist.linux-armv7l/wheel/damona/software/hifiasm 2023-06-21T07:54:00,398 copying build/lib/damona/software/hifiasm/Singularity.hifiasm_0.19.1 -> build/bdist.linux-armv7l/wheel/damona/software/hifiasm 2023-06-21T07:54:00,403 copying build/lib/damona/software/hifiasm/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/hifiasm 2023-06-21T07:54:00,408 creating build/bdist.linux-armv7l/wheel/damona/software/circlator 2023-06-21T07:54:00,410 copying build/lib/damona/software/circlator/Singularity.circlator_1.5.5 -> build/bdist.linux-armv7l/wheel/damona/software/circlator 2023-06-21T07:54:00,415 copying build/lib/damona/software/circlator/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/circlator 2023-06-21T07:54:00,420 creating build/bdist.linux-armv7l/wheel/damona/software/bwa 2023-06-21T07:54:00,423 copying build/lib/damona/software/bwa/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bwa 2023-06-21T07:54:00,427 copying build/lib/damona/software/bwa/Singularity.bwa_0.7.17 -> build/bdist.linux-armv7l/wheel/damona/software/bwa 2023-06-21T07:54:00,432 copying build/lib/damona/software/bwa/Singularity.bwa_mamba_0.7.17 -> build/bdist.linux-armv7l/wheel/damona/software/bwa 2023-06-21T07:54:00,437 creating build/bdist.linux-armv7l/wheel/damona/software/pycoqc 2023-06-21T07:54:00,439 copying build/lib/damona/software/pycoqc/Singularity.pycoqc_2.5.2 -> build/bdist.linux-armv7l/wheel/damona/software/pycoqc 2023-06-21T07:54:00,444 copying build/lib/damona/software/pycoqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/pycoqc 2023-06-21T07:54:00,449 creating build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-06-21T07:54:00,451 copying build/lib/damona/software/fastqc/Singularity.fastqc_0.12.1 -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-06-21T07:54:00,456 copying build/lib/damona/software/fastqc/Singularity.fastqc_0.11.9 -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-06-21T07:54:00,460 copying build/lib/damona/software/fastqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-06-21T07:54:00,465 copying build/lib/damona/software/fastqc/Singularity.fastqc_0.11.9_py3 -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-06-21T07:54:00,469 copying build/lib/damona/software/fastqc/Singularity.fastqc_0.11.8 -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-06-21T07:54:00,475 creating build/bdist.linux-armv7l/wheel/damona/software/mergegi 2023-06-21T07:54:00,477 copying build/lib/damona/software/mergegi/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/mergegi 2023-06-21T07:54:00,481 copying build/lib/damona/software/mergegi/Singularity.mergegi_0.0.1 -> build/bdist.linux-armv7l/wheel/damona/software/mergegi 2023-06-21T07:54:00,487 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,489 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_23.6.13 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,494 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.11.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,499 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.10.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,503 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,507 copying build/lib/damona/software/sequana_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,512 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.14.3 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,517 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.14.5 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,521 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.15.1 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,526 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.12.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,532 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.14.1 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,537 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.14.2 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-06-21T07:54:00,542 creating build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-06-21T07:54:00,545 copying build/lib/damona/software/sequana/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-06-21T07:54:00,549 copying build/lib/damona/software/sequana/Singularity.sequana_0.12.6 -> build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-06-21T07:54:00,554 copying build/lib/damona/software/sequana/Singularity.sequana_0.14.6 -> build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-06-21T07:54:00,558 copying build/lib/damona/software/sequana/Singularity.sequana_0.15.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-06-21T07:54:00,564 creating build/bdist.linux-armv7l/wheel/damona/software/graphviz 2023-06-21T07:54:00,566 copying build/lib/damona/software/graphviz/Singularity.graphviz_7.0.5 -> build/bdist.linux-armv7l/wheel/damona/software/graphviz 2023-06-21T07:54:00,572 copying build/lib/damona/software/graphviz/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/graphviz 2023-06-21T07:54:00,577 copying build/lib/damona/software/graphviz/Singularity.graphviz_2.43.0 -> build/bdist.linux-armv7l/wheel/damona/software/graphviz 2023-06-21T07:54:00,583 creating build/bdist.linux-armv7l/wheel/damona/software/trf 2023-06-21T07:54:00,585 copying build/lib/damona/software/trf/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/trf 2023-06-21T07:54:00,590 copying build/lib/damona/software/trf/Singularity.trf_4.10.0 -> build/bdist.linux-armv7l/wheel/damona/software/trf 2023-06-21T07:54:00,595 creating build/bdist.linux-armv7l/wheel/damona/software/pbbam 2023-06-21T07:54:00,597 copying build/lib/damona/software/pbbam/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/pbbam 2023-06-21T07:54:00,602 copying build/lib/damona/software/pbbam/Singularity.pbbam_2.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/pbbam 2023-06-21T07:54:00,606 copying build/lib/damona/software/pbbam/Singularity.pbbam_2.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/pbbam 2023-06-21T07:54:00,613 creating build/bdist.linux-armv7l/wheel/damona/software/canu 2023-06-21T07:54:00,615 copying build/lib/damona/software/canu/Singularity.canu_1.6.0 -> build/bdist.linux-armv7l/wheel/damona/software/canu 2023-06-21T07:54:00,622 copying build/lib/damona/software/canu/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/canu 2023-06-21T07:54:00,627 copying build/lib/damona/software/canu/Singularity.canu_2.1.1 -> build/bdist.linux-armv7l/wheel/damona/software/canu 2023-06-21T07:54:00,631 copying build/lib/damona/software/canu/Singularity.canu_1.8.0 -> build/bdist.linux-armv7l/wheel/damona/software/canu 2023-06-21T07:54:00,636 creating build/bdist.linux-armv7l/wheel/damona/software/ivar 2023-06-21T07:54:00,639 copying build/lib/damona/software/ivar/Singularity.ivar_1.3.1 -> build/bdist.linux-armv7l/wheel/damona/software/ivar 2023-06-21T07:54:00,643 copying build/lib/damona/software/ivar/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/ivar 2023-06-21T07:54:00,648 creating build/bdist.linux-armv7l/wheel/damona/software/gzip 2023-06-21T07:54:00,651 copying build/lib/damona/software/gzip/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/gzip 2023-06-21T07:54:00,655 copying build/lib/damona/software/gzip/Singularity.gzip_1.9.0 -> build/bdist.linux-armv7l/wheel/damona/software/gzip 2023-06-21T07:54:00,659 creating build/bdist.linux-armv7l/wheel/damona/software/busco 2023-06-21T07:54:00,662 copying build/lib/damona/software/busco/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/busco 2023-06-21T07:54:00,665 copying build/lib/damona/software/busco/Singularity.busco_5.4.6 -> build/bdist.linux-armv7l/wheel/damona/software/busco 2023-06-21T07:54:00,669 creating build/bdist.linux-armv7l/wheel/damona/software/raxml 2023-06-21T07:54:00,671 copying build/lib/damona/software/raxml/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/raxml 2023-06-21T07:54:00,675 copying build/lib/damona/software/raxml/Singularity.raxml_8.2.12 -> build/bdist.linux-armv7l/wheel/damona/software/raxml 2023-06-21T07:54:00,679 creating build/bdist.linux-armv7l/wheel/damona/software/rnadiff 2023-06-21T07:54:00,681 copying build/lib/damona/software/rnadiff/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/rnadiff 2023-06-21T07:54:00,685 copying build/lib/damona/software/rnadiff/Singularity.rnadiff_1.7.1 -> build/bdist.linux-armv7l/wheel/damona/software/rnadiff 2023-06-21T07:54:00,689 creating build/bdist.linux-armv7l/wheel/damona/software/polypolish 2023-06-21T07:54:00,691 copying build/lib/damona/software/polypolish/Singularity.polypolish_0.5.0 -> build/bdist.linux-armv7l/wheel/damona/software/polypolish 2023-06-21T07:54:00,694 copying build/lib/damona/software/polypolish/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/polypolish 2023-06-21T07:54:00,699 creating build/bdist.linux-armv7l/wheel/damona/software/hisat2 2023-06-21T07:54:00,700 copying build/lib/damona/software/hisat2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/hisat2 2023-06-21T07:54:00,705 creating build/bdist.linux-armv7l/wheel/damona/software/gffread 2023-06-21T07:54:00,706 copying build/lib/damona/software/gffread/Singularity.gffread_0.12.1 -> build/bdist.linux-armv7l/wheel/damona/software/gffread 2023-06-21T07:54:00,710 copying build/lib/damona/software/gffread/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/gffread 2023-06-21T07:54:00,714 copying build/lib/damona/software/gffread/Singularity.gffread_0.12.7 -> build/bdist.linux-armv7l/wheel/damona/software/gffread 2023-06-21T07:54:00,718 creating build/bdist.linux-armv7l/wheel/damona/software/blast 2023-06-21T07:54:00,720 copying build/lib/damona/software/blast/Singularity.blast_2.12.0 -> build/bdist.linux-armv7l/wheel/damona/software/blast 2023-06-21T07:54:00,724 copying build/lib/damona/software/blast/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/blast 2023-06-21T07:54:00,728 creating build/bdist.linux-armv7l/wheel/damona/software/shustring 2023-06-21T07:54:00,730 copying build/lib/damona/software/shustring/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/shustring 2023-06-21T07:54:00,733 copying build/lib/damona/software/shustring/Singularity.shustring_2.6.0 -> build/bdist.linux-armv7l/wheel/damona/software/shustring 2023-06-21T07:54:00,738 creating build/bdist.linux-armv7l/wheel/damona/software/mafft 2023-06-21T07:54:00,740 copying build/lib/damona/software/mafft/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/mafft 2023-06-21T07:54:00,743 copying build/lib/damona/software/mafft/Singularity.mafft_7.520.0 -> build/bdist.linux-armv7l/wheel/damona/software/mafft 2023-06-21T07:54:00,748 creating build/bdist.linux-armv7l/wheel/damona/software/nextclade 2023-06-21T07:54:00,749 copying build/lib/damona/software/nextclade/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/nextclade 2023-06-21T07:54:00,753 copying build/lib/damona/software/nextclade/Singularity.nextclade_2.15.0 -> build/bdist.linux-armv7l/wheel/damona/software/nextclade 2023-06-21T07:54:00,757 creating build/bdist.linux-armv7l/wheel/damona/software/bedtools 2023-06-21T07:54:00,759 copying build/lib/damona/software/bedtools/Singularity.bedtools_2.30.0 -> build/bdist.linux-armv7l/wheel/damona/software/bedtools 2023-06-21T07:54:00,763 copying build/lib/damona/software/bedtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bedtools 2023-06-21T07:54:00,767 creating build/bdist.linux-armv7l/wheel/damona/software/RIPseeker 2023-06-21T07:54:00,768 copying build/lib/damona/software/RIPseeker/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/RIPseeker 2023-06-21T07:54:00,772 copying build/lib/damona/software/RIPseeker/Singularity.RIPseeker_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/RIPseeker 2023-06-21T07:54:00,777 creating build/bdist.linux-armv7l/wheel/damona/software/falco 2023-06-21T07:54:00,778 copying build/lib/damona/software/falco/Singularity.falco_0.2.1 -> build/bdist.linux-armv7l/wheel/damona/software/falco 2023-06-21T07:54:00,782 copying build/lib/damona/software/falco/Singularity.falco_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/falco 2023-06-21T07:54:00,786 copying build/lib/damona/software/falco/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/falco 2023-06-21T07:54:00,790 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_denovo 2023-06-21T07:54:00,792 copying build/lib/damona/software/sequana_denovo/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_denovo 2023-06-21T07:54:00,795 copying build/lib/damona/software/sequana_denovo/Singularity.sequana_denovo_0.0.2 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_denovo 2023-06-21T07:54:00,799 copying build/lib/damona/software/__init__.py -> build/bdist.linux-armv7l/wheel/damona/software 2023-06-21T07:54:00,803 creating build/bdist.linux-armv7l/wheel/damona/software/fastp 2023-06-21T07:54:00,805 copying build/lib/damona/software/fastp/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/fastp 2023-06-21T07:54:00,809 copying build/lib/damona/software/fastp/Singularity.fastp_0.23.3 -> build/bdist.linux-armv7l/wheel/damona/software/fastp 2023-06-21T07:54:00,812 copying build/lib/damona/software/fastp/Singularity.fastp_0.23.2 -> build/bdist.linux-armv7l/wheel/damona/software/fastp 2023-06-21T07:54:00,817 creating build/bdist.linux-armv7l/wheel/damona/software/kraken 2023-06-21T07:54:00,819 copying build/lib/damona/software/kraken/Singularity.kraken_2.0.9 -> build/bdist.linux-armv7l/wheel/damona/software/kraken 2023-06-21T07:54:00,823 copying build/lib/damona/software/kraken/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/kraken 2023-06-21T07:54:00,826 copying build/lib/damona/software/kraken/Singularity.kraken_1.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/kraken 2023-06-21T07:54:00,831 creating build/bdist.linux-armv7l/wheel/damona/software/quast 2023-06-21T07:54:00,833 copying build/lib/damona/software/quast/Singularity.quast_5.2.0 -> build/bdist.linux-armv7l/wheel/damona/software/quast 2023-06-21T07:54:00,836 copying build/lib/damona/software/quast/Singularity.quast_5.0.2 -> build/bdist.linux-armv7l/wheel/damona/software/quast 2023-06-21T07:54:00,840 copying build/lib/damona/software/quast/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/quast 2023-06-21T07:54:00,844 creating build/bdist.linux-armv7l/wheel/damona/software/flye 2023-06-21T07:54:00,846 copying build/lib/damona/software/flye/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/flye 2023-06-21T07:54:00,850 copying build/lib/damona/software/flye/Singularity.flye_2.9.0 -> build/bdist.linux-armv7l/wheel/damona/software/flye 2023-06-21T07:54:00,853 copying build/lib/damona/software/flye/Singularity.flye_2.9.1 -> build/bdist.linux-armv7l/wheel/damona/software/flye 2023-06-21T07:54:00,858 creating build/bdist.linux-armv7l/wheel/damona/software/seqtk 2023-06-21T07:54:00,859 copying build/lib/damona/software/seqtk/Singularity.seqtk_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/seqtk 2023-06-21T07:54:00,863 copying build/lib/damona/software/seqtk/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/seqtk 2023-06-21T07:54:00,867 creating build/bdist.linux-armv7l/wheel/damona/software/vt 2023-06-21T07:54:00,869 copying build/lib/damona/software/vt/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/vt 2023-06-21T07:54:00,873 copying build/lib/damona/software/vt/Singularity.vt_0.57721.0 -> build/bdist.linux-armv7l/wheel/damona/software/vt 2023-06-21T07:54:00,877 creating build/bdist.linux-armv7l/wheel/damona/software/bowtie 2023-06-21T07:54:00,879 copying build/lib/damona/software/bowtie/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bowtie 2023-06-21T07:54:00,882 copying build/lib/damona/software/bowtie/Singularity.bowtie_1.3.1 -> build/bdist.linux-armv7l/wheel/damona/software/bowtie 2023-06-21T07:54:00,887 creating build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-06-21T07:54:00,888 copying build/lib/damona/software/minimap2/Singularity.minimap2_2.24.0 -> build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-06-21T07:54:00,892 copying build/lib/damona/software/minimap2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-06-21T07:54:00,896 copying build/lib/damona/software/minimap2/Singularity.minimap2_2.23.0 -> build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-06-21T07:54:00,899 copying build/lib/damona/software/minimap2/Singularity.minimap2_2.17.0 -> build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-06-21T07:54:00,904 creating build/bdist.linux-armv7l/wheel/damona/software/rnaseqc 2023-06-21T07:54:00,905 copying build/lib/damona/software/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/bdist.linux-armv7l/wheel/damona/software/rnaseqc 2023-06-21T07:54:00,909 copying build/lib/damona/software/rnaseqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/rnaseqc 2023-06-21T07:54:00,913 creating build/bdist.linux-armv7l/wheel/damona/software/bbtools 2023-06-21T07:54:00,915 copying build/lib/damona/software/bbtools/Singularity.bbtools_38.94.0 -> build/bdist.linux-armv7l/wheel/damona/software/bbtools 2023-06-21T07:54:00,920 copying build/lib/damona/software/bbtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bbtools 2023-06-21T07:54:00,925 creating build/bdist.linux-armv7l/wheel/damona/software/snpeff 2023-06-21T07:54:00,927 copying build/lib/damona/software/snpeff/Singularity.snpeff_5.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/snpeff 2023-06-21T07:54:00,930 copying build/lib/damona/software/snpeff/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/snpeff 2023-06-21T07:54:00,934 copying build/lib/damona/software/snpeff/Singularity.snpeff_5.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/snpeff 2023-06-21T07:54:00,938 creating build/bdist.linux-armv7l/wheel/damona/software/samtools_minimap2 2023-06-21T07:54:00,940 copying build/lib/damona/software/samtools_minimap2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/samtools_minimap2 2023-06-21T07:54:00,944 copying build/lib/damona/software/samtools_minimap2/Singularity.samtools_1.17_minimap2_2.24.0 -> build/bdist.linux-armv7l/wheel/damona/software/samtools_minimap2 2023-06-21T07:54:00,948 creating build/bdist.linux-armv7l/wheel/damona/software/ccs 2023-06-21T07:54:00,950 copying build/lib/damona/software/ccs/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/ccs 2023-06-21T07:54:00,954 copying build/lib/damona/software/ccs/Singularity.ccs_6.4.0 -> build/bdist.linux-armv7l/wheel/damona/software/ccs 2023-06-21T07:54:00,958 creating build/bdist.linux-armv7l/wheel/damona/software/bcl2fastq 2023-06-21T07:54:00,960 copying build/lib/damona/software/bcl2fastq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bcl2fastq 2023-06-21T07:54:00,964 copying build/lib/damona/software/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/bdist.linux-armv7l/wheel/damona/software/bcl2fastq 2023-06-21T07:54:00,968 creating build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-06-21T07:54:00,970 copying build/lib/damona/software/bowtie2/Singularity.bowtie2_2.4.2 -> build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-06-21T07:54:00,974 copying build/lib/damona/software/bowtie2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-06-21T07:54:00,977 copying build/lib/damona/software/bowtie2/Singularity.bowtie2_2.3.4 -> build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-06-21T07:54:00,982 creating build/bdist.linux-armv7l/wheel/damona/software/cellranger 2023-06-21T07:54:00,983 copying build/lib/damona/software/cellranger/Singularity.cellranger_7.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/cellranger 2023-06-21T07:54:00,987 copying build/lib/damona/environ.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:54:00,993 copying build/lib/damona/script.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:54:00,998 copying build/lib/damona/config.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:54:01,003 copying build/lib/damona/utils.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:54:01,006 copying build/lib/damona/builders.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:54:01,010 copying build/lib/damona/__init__.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:54:01,014 copying build/lib/damona/registry.py -> build/bdist.linux-armv7l/wheel/damona 2023-06-21T07:54:01,020 creating build/bdist.linux-armv7l/wheel/damona/biocontainers 2023-06-21T07:54:01,021 copying build/lib/damona/biocontainers/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/biocontainers 2023-06-21T07:54:01,219 copying build/lib/damona/biocontainers/__init__.py -> build/bdist.linux-armv7l/wheel/damona/biocontainers 2023-06-21T07:54:01,222 running install_egg_info 2023-06-21T07:54:01,351 running egg_info 2023-06-21T07:54:01,415 writing damona.egg-info/PKG-INFO 2023-06-21T07:54:01,421 writing dependency_links to damona.egg-info/dependency_links.txt 2023-06-21T07:54:01,426 writing entry points to damona.egg-info/entry_points.txt 2023-06-21T07:54:01,429 writing requirements to damona.egg-info/requires.txt 2023-06-21T07:54:01,432 writing top-level names to damona.egg-info/top_level.txt 2023-06-21T07:54:01,614 reading manifest file 'damona.egg-info/SOURCES.txt' 2023-06-21T07:54:01,637 reading manifest template 'MANIFEST.in' 2023-06-21T07:54:01,642 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-06-21T07:54:01,646 warning: no previously-included files matching '*pyc' found under directory '*' 2023-06-21T07:54:01,650 warning: no previously-included files matching 'test' found under directory '*' 2023-06-21T07:54:01,654 warning: no files found matching '.requirements_dev.txt' 2023-06-21T07:54:01,658 no previously-included directories found matching 'test' 2023-06-21T07:54:01,661 no previously-included directories found matching 'doc' 2023-06-21T07:54:01,662 adding license file 'LICENSE' 2023-06-21T07:54:01,695 writing manifest file 'damona.egg-info/SOURCES.txt' 2023-06-21T07:54:01,700 Copying damona.egg-info to build/bdist.linux-armv7l/wheel/damona-0.9.0-py3.7.egg-info 2023-06-21T07:54:01,731 running install_scripts 2023-06-21T07:54:01,786 creating build/bdist.linux-armv7l/wheel/damona-0.9.0.dist-info/WHEEL 2023-06-21T07:54:01,792 creating '/tmp/pip-wheel-msw2zf0e/damona-0.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-21T07:54:01,797 adding 'damona/__init__.py' 2023-06-21T07:54:01,800 adding 'damona/admin.py' 2023-06-21T07:54:01,804 adding 'damona/builders.py' 2023-06-21T07:54:01,809 adding 'damona/common.py' 2023-06-21T07:54:01,812 adding 'damona/config.py' 2023-06-21T07:54:01,819 adding 'damona/environ.py' 2023-06-21T07:54:01,826 adding 'damona/install.py' 2023-06-21T07:54:01,832 adding 'damona/registry.py' 2023-06-21T07:54:01,841 adding 'damona/script.py' 2023-06-21T07:54:01,845 adding 'damona/utils.py' 2023-06-21T07:54:01,849 adding 'damona/zenodo.py' 2023-06-21T07:54:01,853 adding 'damona/biocontainers/__init__.py' 2023-06-21T07:54:02,457 adding 'damona/biocontainers/registry.yaml' 2023-06-21T07:54:02,537 adding 'damona/library/__init__.py' 2023-06-21T07:54:02,541 adding 'damona/library/R/Singularity.R_3.6.3' 2023-06-21T07:54:02,544 adding 'damona/library/R/Singularity.R_4.0.2' 2023-06-21T07:54:02,546 adding 'damona/library/R/registry.yaml' 2023-06-21T07:54:02,550 adding 'damona/library/conda/Singularity.conda_23.5.0' 2023-06-21T07:54:02,553 adding 'damona/library/conda/Singularity.conda_4.7.12' 2023-06-21T07:54:02,556 adding 'damona/library/conda/Singularity.conda_4.9.2' 2023-06-21T07:54:02,559 adding 'damona/library/conda/Singularity.conda_4.9.3' 2023-06-21T07:54:02,562 adding 'damona/library/conda/registry.yaml' 2023-06-21T07:54:02,566 adding 'damona/library/micromamba/Singularity.micromamba_1.4.3' 2023-06-21T07:54:02,568 adding 'damona/library/micromamba/registry.yaml' 2023-06-21T07:54:02,572 adding 'damona/library/rust/Singularity.rust' 2023-06-21T07:54:02,575 adding 'damona/library/ubuntu/Singularity.ubuntu_16.04' 2023-06-21T07:54:02,578 adding 'damona/library/ubuntu/Singularity.ubuntu_18.04' 2023-06-21T07:54:02,581 adding 'damona/library/ubuntu/registry.yaml' 2023-06-21T07:54:02,584 adding 'damona/papers/__init__.py' 2023-06-21T07:54:02,588 adding 'damona/shell/__init__.py' 2023-06-21T07:54:02,591 adding 'damona/shell/bash/__init__.py' 2023-06-21T07:54:02,594 adding 'damona/shell/bash/damona.sh' 2023-06-21T07:54:02,598 adding 'damona/shell/fish/damona.fish' 2023-06-21T07:54:02,604 adding 'damona/software/__init__.py' 2023-06-21T07:54:02,608 adding 'damona/software/RIPseeker/Singularity.RIPseeker_1.0.0' 2023-06-21T07:54:02,610 adding 'damona/software/RIPseeker/registry.yaml' 2023-06-21T07:54:02,614 adding 'damona/software/art/Singularity.art_2.5.8' 2023-06-21T07:54:02,616 adding 'damona/software/art/Singularity.art_3.11.14' 2023-06-21T07:54:02,619 adding 'damona/software/art/registry.yaml' 2023-06-21T07:54:02,623 adding 'damona/software/bamtools/Singularity.bamtools_2.5.2' 2023-06-21T07:54:02,625 adding 'damona/software/bamtools/registry.yaml' 2023-06-21T07:54:02,629 adding 'damona/software/bbtools/Singularity.bbtools_38.94.0' 2023-06-21T07:54:02,632 adding 'damona/software/bbtools/registry.yaml' 2023-06-21T07:54:02,636 adding 'damona/software/bcl2fastq/Singularity.bcl2fastq_2.20.0' 2023-06-21T07:54:02,638 adding 'damona/software/bcl2fastq/registry.yaml' 2023-06-21T07:54:02,642 adding 'damona/software/bedtools/Singularity.bedtools_2.30.0' 2023-06-21T07:54:02,645 adding 'damona/software/bedtools/registry.yaml' 2023-06-21T07:54:02,648 adding 'damona/software/bioconvert/Singularity.bioconvert_0.6.1' 2023-06-21T07:54:02,651 adding 'damona/software/bioconvert/Singularity.bioconvert_0.6.2' 2023-06-21T07:54:02,654 adding 'damona/software/bioconvert/Singularity.bioconvert_0.6.3' 2023-06-21T07:54:02,657 adding 'damona/software/bioconvert/Singularity.bioconvert_1.0.0' 2023-06-21T07:54:02,659 adding 'damona/software/bioconvert/registry.yaml' 2023-06-21T07:54:02,663 adding 'damona/software/blast/Singularity.blast_2.12.0' 2023-06-21T07:54:02,665 adding 'damona/software/blast/registry.yaml' 2023-06-21T07:54:02,669 adding 'damona/software/bowtie/Singularity.bowtie_1.3.1' 2023-06-21T07:54:02,671 adding 'damona/software/bowtie/registry.yaml' 2023-06-21T07:54:02,675 adding 'damona/software/bowtie2/Singularity.bowtie2_2.3.4' 2023-06-21T07:54:02,677 adding 'damona/software/bowtie2/Singularity.bowtie2_2.4.2' 2023-06-21T07:54:02,680 adding 'damona/software/bowtie2/registry.yaml' 2023-06-21T07:54:02,683 adding 'damona/software/busco/Singularity.busco_5.4.6' 2023-06-21T07:54:02,686 adding 'damona/software/busco/registry.yaml' 2023-06-21T07:54:02,689 adding 'damona/software/bwa/Singularity.bwa_0.7.17' 2023-06-21T07:54:02,692 adding 'damona/software/bwa/Singularity.bwa_mamba_0.7.17' 2023-06-21T07:54:02,694 adding 'damona/software/bwa/registry.yaml' 2023-06-21T07:54:02,698 adding 'damona/software/canu/Singularity.canu_1.6.0' 2023-06-21T07:54:02,700 adding 'damona/software/canu/Singularity.canu_1.8.0' 2023-06-21T07:54:02,703 adding 'damona/software/canu/Singularity.canu_2.1.1' 2023-06-21T07:54:02,705 adding 'damona/software/canu/registry.yaml' 2023-06-21T07:54:02,709 adding 'damona/software/ccs/Singularity.ccs_6.4.0' 2023-06-21T07:54:02,711 adding 'damona/software/ccs/registry.yaml' 2023-06-21T07:54:02,715 adding 'damona/software/cellranger/Singularity.cellranger_7.1.0' 2023-06-21T07:54:02,718 adding 'damona/software/circlator/Singularity.circlator_1.5.5' 2023-06-21T07:54:02,721 adding 'damona/software/circlator/registry.yaml' 2023-06-21T07:54:02,724 adding 'damona/software/falco/Singularity.falco_0.2.1' 2023-06-21T07:54:02,727 adding 'damona/software/falco/Singularity.falco_1.0.0' 2023-06-21T07:54:02,729 adding 'damona/software/falco/registry.yaml' 2023-06-21T07:54:02,733 adding 'damona/software/fastp/Singularity.fastp_0.23.2' 2023-06-21T07:54:02,735 adding 'damona/software/fastp/Singularity.fastp_0.23.3' 2023-06-21T07:54:02,738 adding 'damona/software/fastp/registry.yaml' 2023-06-21T07:54:02,741 adding 'damona/software/fastqc/Singularity.fastqc_0.11.8' 2023-06-21T07:54:02,744 adding 'damona/software/fastqc/Singularity.fastqc_0.11.9' 2023-06-21T07:54:02,746 adding 'damona/software/fastqc/Singularity.fastqc_0.11.9_py3' 2023-06-21T07:54:02,749 adding 'damona/software/fastqc/Singularity.fastqc_0.12.1' 2023-06-21T07:54:02,751 adding 'damona/software/fastqc/registry.yaml' 2023-06-21T07:54:02,755 adding 'damona/software/flye/Singularity.flye_2.9.0' 2023-06-21T07:54:02,757 adding 'damona/software/flye/Singularity.flye_2.9.1' 2023-06-21T07:54:02,759 adding 'damona/software/flye/registry.yaml' 2023-06-21T07:54:02,763 adding 'damona/software/gffread/Singularity.gffread_0.12.1' 2023-06-21T07:54:02,765 adding 'damona/software/gffread/Singularity.gffread_0.12.7' 2023-06-21T07:54:02,768 adding 'damona/software/gffread/registry.yaml' 2023-06-21T07:54:02,771 adding 'damona/software/graphviz/Singularity.graphviz_2.43.0' 2023-06-21T07:54:02,774 adding 'damona/software/graphviz/Singularity.graphviz_7.0.5' 2023-06-21T07:54:02,776 adding 'damona/software/graphviz/registry.yaml' 2023-06-21T07:54:02,779 adding 'damona/software/gzip/Singularity.gzip_1.9.0' 2023-06-21T07:54:02,782 adding 'damona/software/gzip/registry.yaml' 2023-06-21T07:54:02,785 adding 'damona/software/hifiasm/Singularity.hifiasm_0.19.1' 2023-06-21T07:54:02,788 adding 'damona/software/hifiasm/registry.yaml' 2023-06-21T07:54:02,791 adding 'damona/software/hisat2/registry.yaml' 2023-06-21T07:54:02,794 adding 'damona/software/homer/Singularity.homer_4.11.0' 2023-06-21T07:54:02,797 adding 'damona/software/homer/registry.yaml' 2023-06-21T07:54:02,800 adding 'damona/software/idr/Singularity.idr_2.0.3' 2023-06-21T07:54:02,803 adding 'damona/software/idr/registry.yaml' 2023-06-21T07:54:02,806 adding 'damona/software/igvtools/Singularity.igvtools_2.12.0' 2023-06-21T07:54:02,809 adding 'damona/software/igvtools/registry.yaml' 2023-06-21T07:54:02,812 adding 'damona/software/ivar/Singularity.ivar_1.3.1' 2023-06-21T07:54:02,815 adding 'damona/software/ivar/registry.yaml' 2023-06-21T07:54:02,818 adding 'damona/software/kraken/Singularity.kraken_1.1.0' 2023-06-21T07:54:02,821 adding 'damona/software/kraken/Singularity.kraken_2.0.9' 2023-06-21T07:54:02,823 adding 'damona/software/kraken/registry.yaml' 2023-06-21T07:54:02,827 adding 'damona/software/mafft/Singularity.mafft_7.520.0' 2023-06-21T07:54:02,829 adding 'damona/software/mafft/registry.yaml' 2023-06-21T07:54:02,833 adding 'damona/software/medaka/Singularity.medaka_1.7.3' 2023-06-21T07:54:02,835 adding 'damona/software/medaka/registry.yaml' 2023-06-21T07:54:02,838 adding 'damona/software/mergegi/Singularity.mergegi_0.0.1' 2023-06-21T07:54:02,841 adding 'damona/software/mergegi/registry.yaml' 2023-06-21T07:54:02,844 adding 'damona/software/minimap2/Singularity.minimap2_2.17.0' 2023-06-21T07:54:02,847 adding 'damona/software/minimap2/Singularity.minimap2_2.23.0' 2023-06-21T07:54:02,849 adding 'damona/software/minimap2/Singularity.minimap2_2.24.0' 2023-06-21T07:54:02,852 adding 'damona/software/minimap2/registry.yaml' 2023-06-21T07:54:02,855 adding 'damona/software/nextclade/Singularity.nextclade_2.15.0' 2023-06-21T07:54:02,857 adding 'damona/software/nextclade/registry.yaml' 2023-06-21T07:54:02,861 adding 'damona/software/pangolin/Singularity.pangolin_4.3.0' 2023-06-21T07:54:02,863 adding 'damona/software/pangolin/registry.yaml' 2023-06-21T07:54:02,867 adding 'damona/software/pbbam/Singularity.pbbam_2.1.0' 2023-06-21T07:54:02,869 adding 'damona/software/pbbam/Singularity.pbbam_2.3.0' 2023-06-21T07:54:02,872 adding 'damona/software/pbbam/registry.yaml' 2023-06-21T07:54:02,876 adding 'damona/software/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2' 2023-06-21T07:54:02,878 adding 'damona/software/phantompeakqualtools/registry.yaml' 2023-06-21T07:54:02,882 adding 'damona/software/picard/Singularity.picard_2.26' 2023-06-21T07:54:02,885 adding 'damona/software/pigz/Singularity.pigz_2.4.0' 2023-06-21T07:54:02,888 adding 'damona/software/pigz/registry.yaml' 2023-06-21T07:54:02,891 adding 'damona/software/polypolish/Singularity.polypolish_0.5.0' 2023-06-21T07:54:02,894 adding 'damona/software/polypolish/registry.yaml' 2023-06-21T07:54:02,897 adding 'damona/software/prokka/Singularity.prokka_1.14.5' 2023-06-21T07:54:02,900 adding 'damona/software/prokka/Singularity.prokka_1.14.6' 2023-06-21T07:54:02,903 adding 'damona/software/prokka/registry.yaml' 2023-06-21T07:54:02,906 adding 'damona/software/pycoqc/Singularity.pycoqc_2.5.2' 2023-06-21T07:54:02,908 adding 'damona/software/pycoqc/registry.yaml' 2023-06-21T07:54:02,912 adding 'damona/software/quast/Singularity.quast_5.0.2' 2023-06-21T07:54:02,915 adding 'damona/software/quast/Singularity.quast_5.2.0' 2023-06-21T07:54:02,917 adding 'damona/software/quast/registry.yaml' 2023-06-21T07:54:02,921 adding 'damona/software/raxml/Singularity.raxml_8.2.12' 2023-06-21T07:54:02,924 adding 'damona/software/raxml/registry.yaml' 2023-06-21T07:54:02,928 adding 'damona/software/rnadiff/Singularity.rnadiff_1.7.1' 2023-06-21T07:54:02,930 adding 'damona/software/rnadiff/registry.yaml' 2023-06-21T07:54:02,934 adding 'damona/software/rnaseqc/Singularity.rnaseqc_2.35.0' 2023-06-21T07:54:02,936 adding 'damona/software/rnaseqc/registry.yaml' 2023-06-21T07:54:02,940 adding 'damona/software/rtools/Singularity.rtools_1.0.0' 2023-06-21T07:54:02,943 adding 'damona/software/rtools/Singularity.rtools_1.1.0' 2023-06-21T07:54:02,945 adding 'damona/software/rtools/Singularity.rtools_1.2.0' 2023-06-21T07:54:02,947 adding 'damona/software/rtools/registry.yaml' 2023-06-21T07:54:02,951 adding 'damona/software/salmon/Singularity.salmon_1.3.0' 2023-06-21T07:54:02,953 adding 'damona/software/salmon/registry.yaml' 2023-06-21T07:54:02,957 adding 'damona/software/samtools/Singularity.samtools_1.15.0' 2023-06-21T07:54:02,960 adding 'damona/software/samtools/Singularity.samtools_1.16.1' 2023-06-21T07:54:02,962 adding 'damona/software/samtools/registry.yaml' 2023-06-21T07:54:02,966 adding 'damona/software/samtools_minimap2/Singularity.samtools_1.17_minimap2_2.24.0' 2023-06-21T07:54:02,968 adding 'damona/software/samtools_minimap2/registry.yaml' 2023-06-21T07:54:02,972 adding 'damona/software/seqkit/Singularity.seqkit_2.1.0' 2023-06-21T07:54:02,975 adding 'damona/software/seqkit/Singularity.seqkit_2.4.0' 2023-06-21T07:54:02,977 adding 'damona/software/seqkit/registry.yaml' 2023-06-21T07:54:02,981 adding 'damona/software/seqtk/Singularity.seqtk_1.3.0' 2023-06-21T07:54:02,983 adding 'damona/software/seqtk/registry.yaml' 2023-06-21T07:54:02,987 adding 'damona/software/sequana/Singularity.sequana_0.12.6' 2023-06-21T07:54:02,990 adding 'damona/software/sequana/Singularity.sequana_0.14.6' 2023-06-21T07:54:02,993 adding 'damona/software/sequana/Singularity.sequana_0.15.0' 2023-06-21T07:54:02,995 adding 'damona/software/sequana/registry.yaml' 2023-06-21T07:54:02,999 adding 'damona/software/sequana_denovo/Singularity.sequana_denovo_0.0.2' 2023-06-21T07:54:03,002 adding 'damona/software/sequana_denovo/registry.yaml' 2023-06-21T07:54:03,005 adding 'damona/software/sequana_minimal/Singularity.sequana_minimal_23.6.13' 2023-06-21T07:54:03,008 adding 'damona/software/sequana_minimal/registry.yaml' 2023-06-21T07:54:03,012 adding 'damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0' 2023-06-21T07:54:03,014 adding 'damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.2.0' 2023-06-21T07:54:03,018 adding 'damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.3.0' 2023-06-21T07:54:03,020 adding 'damona/software/sequana_perl_tools/registry.yaml' 2023-06-21T07:54:03,024 adding 'damona/software/sequana_ribofinder/Singularity.sequana_ribofinder_0.12.0' 2023-06-21T07:54:03,027 adding 'damona/software/sequana_ribofinder/registry.yaml' 2023-06-21T07:54:03,031 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.10.0' 2023-06-21T07:54:03,034 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.11.0' 2023-06-21T07:54:03,037 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.12.0' 2023-06-21T07:54:03,039 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.14.1' 2023-06-21T07:54:03,042 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.14.2' 2023-06-21T07:54:03,045 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.14.3' 2023-06-21T07:54:03,047 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.14.5' 2023-06-21T07:54:03,049 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.15.1' 2023-06-21T07:54:03,052 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.9.0' 2023-06-21T07:54:03,055 adding 'damona/software/sequana_tools/Singularity.sequana_tools_23.6.13' 2023-06-21T07:54:03,058 adding 'damona/software/sequana_tools/registry.yaml' 2023-06-21T07:54:03,062 adding 'damona/software/shustring/Singularity.shustring_2.6.0' 2023-06-21T07:54:03,065 adding 'damona/software/shustring/registry.yaml' 2023-06-21T07:54:03,068 adding 'damona/software/snpeff/Singularity.snpeff_5.0.0' 2023-06-21T07:54:03,071 adding 'damona/software/snpeff/Singularity.snpeff_5.1.0' 2023-06-21T07:54:03,074 adding 'damona/software/snpeff/registry.yaml' 2023-06-21T07:54:03,077 adding 'damona/software/subread/Singularity.subread_2.0.3' 2023-06-21T07:54:03,080 adding 'damona/software/subread/registry.yaml' 2023-06-21T07:54:03,083 adding 'damona/software/trf/Singularity.trf_4.10.0' 2023-06-21T07:54:03,086 adding 'damona/software/trf/registry.yaml' 2023-06-21T07:54:03,089 adding 'damona/software/ucsc/Singularity.ucsc_3.7.7' 2023-06-21T07:54:03,092 adding 'damona/software/ucsc/registry.yaml' 2023-06-21T07:54:03,095 adding 'damona/software/vt/Singularity.vt_0.57721.0' 2023-06-21T07:54:03,098 adding 'damona/software/vt/registry.yaml' 2023-06-21T07:54:03,103 adding 'damona-0.9.0.dist-info/LICENSE' 2023-06-21T07:54:03,109 adding 'damona-0.9.0.dist-info/METADATA' 2023-06-21T07:54:03,111 adding 'damona-0.9.0.dist-info/WHEEL' 2023-06-21T07:54:03,113 adding 'damona-0.9.0.dist-info/entry_points.txt' 2023-06-21T07:54:03,115 adding 'damona-0.9.0.dist-info/top_level.txt' 2023-06-21T07:54:03,123 adding 'damona-0.9.0.dist-info/RECORD' 2023-06-21T07:54:03,152 removing build/bdist.linux-armv7l/wheel 2023-06-21T07:54:03,501 Building wheel for damona (setup.py): finished with status 'done' 2023-06-21T07:54:03,524 Created wheel for damona: filename=damona-0.9.0-py3-none-any.whl size=549072 sha256=d0ea32820c386b85f3bd0c765ea8e1f1a265e6fd779ede46ac4bc325e62abbfa 2023-06-21T07:54:03,526 Stored in directory: /tmp/pip-ephem-wheel-cache-as1zottl/wheels/3d/ea/a5/acdde1fcdb00d6211e0ea61caca1a35574ef667cce638923a8 2023-06-21T07:54:03,576 Successfully built damona 2023-06-21T07:54:03,626 Removed build tracker: '/tmp/pip-build-tracker-j900lgn3'