2023-06-21T12:02:22,817 Created temporary directory: /tmp/pip-build-tracker-z5g1x93l 2023-06-21T12:02:22,818 Initialized build tracking at /tmp/pip-build-tracker-z5g1x93l 2023-06-21T12:02:22,818 Created build tracker: /tmp/pip-build-tracker-z5g1x93l 2023-06-21T12:02:22,818 Entered build tracker: /tmp/pip-build-tracker-z5g1x93l 2023-06-21T12:02:22,819 Created temporary directory: /tmp/pip-wheel-xgu8v1lc 2023-06-21T12:02:22,822 Created temporary directory: /tmp/pip-ephem-wheel-cache-ehgkitn2 2023-06-21T12:02:22,845 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-21T12:02:22,848 2 location(s) to search for versions of pmx-biobb: 2023-06-21T12:02:22,848 * https://pypi.org/simple/pmx-biobb/ 2023-06-21T12:02:22,848 * https://www.piwheels.org/simple/pmx-biobb/ 2023-06-21T12:02:22,849 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/ 2023-06-21T12:02:22,849 Getting page https://pypi.org/simple/pmx-biobb/ 2023-06-21T12:02:22,851 Found index url https://pypi.org/simple/ 2023-06-21T12:02:22,916 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json 2023-06-21T12:02:22,920 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:22,920 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:22,921 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:22,921 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:22,921 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:22,922 Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:22,922 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:22,922 Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0 2023-06-21T12:02:22,923 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:22,923 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:22,923 Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1 2023-06-21T12:02:22,924 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:22,924 Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2 2023-06-21T12:02:22,925 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:22,925 Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3 2023-06-21T12:02:22,925 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:22,926 Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0 2023-06-21T12:02:22,926 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:22,927 Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1 2023-06-21T12:02:22,927 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/ 2023-06-21T12:02:22,927 Getting page https://www.piwheels.org/simple/pmx-biobb/ 2023-06-21T12:02:22,928 Found index url https://www.piwheels.org/simple/ 2023-06-21T12:02:23,110 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html 2023-06-21T12:02:23,118 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,118 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,119 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,119 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,119 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,119 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,120 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,120 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,120 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,120 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,120 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,120 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,121 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,121 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,121 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,121 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,121 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,122 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,122 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,122 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,122 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,122 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-21T12:02:23,123 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:23,123 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:23,123 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:23,123 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-21T12:02:23,123 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/ 2023-06-21T12:02:23,124 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/ 2023-06-21T12:02:23,141 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates 2023-06-21T12:02:23,158 Collecting pmx-biobb==4.0.1 2023-06-21T12:02:23,160 Created temporary directory: /tmp/pip-unpack-cbmf5rrv 2023-06-21T12:02:23,227 Downloading pmx_biobb-4.0.1.tar.gz (3.8 MB) 2023-06-21T12:02:24,925 Added pmx-biobb==4.0.1 from https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-z5g1x93l' 2023-06-21T12:02:24,926 Running setup.py (path:/tmp/pip-wheel-xgu8v1lc/pmx-biobb_26ae8a77e8d846fb867976c7da90e813/setup.py) egg_info for package pmx-biobb 2023-06-21T12:02:24,927 Created temporary directory: /tmp/pip-pip-egg-info-5fvxx3lx 2023-06-21T12:02:24,927 Preparing metadata (setup.py): started 2023-06-21T12:02:24,928 Running command python setup.py egg_info 2023-06-21T12:02:25,566 running egg_info 2023-06-21T12:02:25,568 creating /tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info 2023-06-21T12:02:25,593 writing /tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info/PKG-INFO 2023-06-21T12:02:25,596 writing dependency_links to /tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info/dependency_links.txt 2023-06-21T12:02:25,598 writing entry points to /tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info/entry_points.txt 2023-06-21T12:02:25,600 writing requirements to /tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info/requires.txt 2023-06-21T12:02:25,601 writing top-level names to /tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info/top_level.txt 2023-06-21T12:02:25,603 writing manifest file '/tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info/SOURCES.txt' 2023-06-21T12:02:25,863 reading manifest file '/tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info/SOURCES.txt' 2023-06-21T12:02:25,865 reading manifest template 'MANIFEST.in' 2023-06-21T12:02:25,888 adding license file 'LICENSE' 2023-06-21T12:02:25,898 writing manifest file '/tmp/pip-pip-egg-info-5fvxx3lx/pmx_biobb.egg-info/SOURCES.txt' 2023-06-21T12:02:25,969 Preparing metadata (setup.py): finished with status 'done' 2023-06-21T12:02:25,974 Source in /tmp/pip-wheel-xgu8v1lc/pmx-biobb_26ae8a77e8d846fb867976c7da90e813 has version 4.0.1, which satisfies requirement pmx-biobb==4.0.1 from https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz 2023-06-21T12:02:25,975 Removed pmx-biobb==4.0.1 from https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-z5g1x93l' 2023-06-21T12:02:25,982 Created temporary directory: /tmp/pip-unpack-gpz1mwe7 2023-06-21T12:02:25,982 Building wheels for collected packages: pmx-biobb 2023-06-21T12:02:25,986 Created temporary directory: /tmp/pip-wheel-bi1rkki4 2023-06-21T12:02:25,986 Building wheel for pmx-biobb (setup.py): started 2023-06-21T12:02:25,987 Destination directory: /tmp/pip-wheel-bi1rkki4 2023-06-21T12:02:25,987 Running command python setup.py bdist_wheel 2023-06-21T12:02:26,656 running bdist_wheel 2023-06-21T12:02:26,933 running build 2023-06-21T12:02:26,934 running build_py 2023-06-21T12:02:26,937 creating build 2023-06-21T12:02:26,938 creating build/lib.linux-armv7l-cpython-39 2023-06-21T12:02:26,938 creating build/lib.linux-armv7l-cpython-39/pmx 2023-06-21T12:02:26,940 copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-06-21T12:02:26,941 running egg_info 2023-06-21T12:02:26,999 writing src/pmx_biobb.egg-info/PKG-INFO 2023-06-21T12:02:27,001 writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt 2023-06-21T12:02:27,003 writing entry points to src/pmx_biobb.egg-info/entry_points.txt 2023-06-21T12:02:27,005 writing requirements to src/pmx_biobb.egg-info/requires.txt 2023-06-21T12:02:27,006 writing top-level names to src/pmx_biobb.egg-info/top_level.txt 2023-06-21T12:02:27,035 reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-06-21T12:02:27,042 reading manifest template 'MANIFEST.in' 2023-06-21T12:02:27,057 adding license file 'LICENSE' 2023-06-21T12:02:27,071 writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-06-21T12:02:27,074 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data' is absent from the `packages` configuration. 2023-06-21T12:02:27,074 !! 2023-06-21T12:02:27,074 ******************************************************************************** 2023-06-21T12:02:27,074 ############################ 2023-06-21T12:02:27,074 # Package would be ignored # 2023-06-21T12:02:27,075 ############################ 2023-06-21T12:02:27,075 Python recognizes 'pmx.data' as an importable package[^1], 2023-06-21T12:02:27,075 but it is absent from setuptools' `packages` configuration. 2023-06-21T12:02:27,075 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-21T12:02:27,075 package, please make sure that 'pmx.data' is explicitly added 2023-06-21T12:02:27,075 to the `packages` configuration field. 2023-06-21T12:02:27,075 Alternatively, you can also rely on setuptools' discovery methods 2023-06-21T12:02:27,076 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-21T12:02:27,076 instead of `find_packages(...)`/`find:`). 2023-06-21T12:02:27,076 You can read more about "package discovery" on setuptools documentation page: 2023-06-21T12:02:27,076 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-21T12:02:27,076 If you don't want 'pmx.data' to be distributed and are 2023-06-21T12:02:27,077 already explicitly excluding 'pmx.data' via 2023-06-21T12:02:27,077 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-21T12:02:27,077 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-21T12:02:27,077 combination with a more fine grained `package-data` configuration. 2023-06-21T12:02:27,077 You can read more about "package data files" on setuptools documentation page: 2023-06-21T12:02:27,077 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-21T12:02:27,078 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-21T12:02:27,078 even if it does not contain any `.py` files. 2023-06-21T12:02:27,078 On the other hand, currently there is no concept of package data 2023-06-21T12:02:27,078 directory, all directories are treated like packages. 2023-06-21T12:02:27,078 ******************************************************************************** 2023-06-21T12:02:27,078 !! 2023-06-21T12:02:27,078 check.warn(importable) 2023-06-21T12:02:27,079 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data.mutff45' is absent from the `packages` configuration. 2023-06-21T12:02:27,079 !! 2023-06-21T12:02:27,079 ******************************************************************************** 2023-06-21T12:02:27,079 ############################ 2023-06-21T12:02:27,079 # Package would be ignored # 2023-06-21T12:02:27,079 ############################ 2023-06-21T12:02:27,079 Python recognizes 'pmx.data.mutff45' as an importable package[^1], 2023-06-21T12:02:27,080 but it is absent from setuptools' `packages` configuration. 2023-06-21T12:02:27,080 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-21T12:02:27,080 package, please make sure that 'pmx.data.mutff45' is explicitly added 2023-06-21T12:02:27,080 to the `packages` configuration field. 2023-06-21T12:02:27,080 Alternatively, you can also rely on setuptools' discovery methods 2023-06-21T12:02:27,080 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-21T12:02:27,080 instead of `find_packages(...)`/`find:`). 2023-06-21T12:02:27,081 You can read more about "package discovery" on setuptools documentation page: 2023-06-21T12:02:27,081 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-21T12:02:27,081 If you don't want 'pmx.data.mutff45' to be distributed and are 2023-06-21T12:02:27,081 already explicitly excluding 'pmx.data.mutff45' via 2023-06-21T12:02:27,081 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-21T12:02:27,081 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-21T12:02:27,082 combination with a more fine grained `package-data` configuration. 2023-06-21T12:02:27,082 You can read more about "package data files" on setuptools documentation page: 2023-06-21T12:02:27,082 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-21T12:02:27,082 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-21T12:02:27,082 even if it does not contain any `.py` files. 2023-06-21T12:02:27,083 On the other hand, currently there is no concept of package data 2023-06-21T12:02:27,083 directory, all directories are treated like packages. 2023-06-21T12:02:27,083 ******************************************************************************** 2023-06-21T12:02:27,083 !! 2023-06-21T12:02:27,083 check.warn(importable) 2023-06-21T12:02:27,083 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data.mutff45dna' is absent from the `packages` configuration. 2023-06-21T12:02:27,083 !! 2023-06-21T12:02:27,084 ******************************************************************************** 2023-06-21T12:02:27,084 ############################ 2023-06-21T12:02:27,084 # Package would be ignored # 2023-06-21T12:02:27,084 ############################ 2023-06-21T12:02:27,084 Python recognizes 'pmx.data.mutff45dna' as an importable package[^1], 2023-06-21T12:02:27,084 but it is absent from setuptools' `packages` configuration. 2023-06-21T12:02:27,084 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-21T12:02:27,085 package, please make sure that 'pmx.data.mutff45dna' is explicitly added 2023-06-21T12:02:27,085 to the `packages` configuration field. 2023-06-21T12:02:27,085 Alternatively, you can also rely on setuptools' discovery methods 2023-06-21T12:02:27,085 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-21T12:02:27,085 instead of `find_packages(...)`/`find:`). 2023-06-21T12:02:27,085 You can read more about "package discovery" on setuptools documentation page: 2023-06-21T12:02:27,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-21T12:02:27,086 If you don't want 'pmx.data.mutff45dna' to be distributed and are 2023-06-21T12:02:27,086 already explicitly excluding 'pmx.data.mutff45dna' via 2023-06-21T12:02:27,086 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-21T12:02:27,086 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-21T12:02:27,086 combination with a more fine grained `package-data` configuration. 2023-06-21T12:02:27,086 You can read more about "package data files" on setuptools documentation page: 2023-06-21T12:02:27,087 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-21T12:02:27,087 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-21T12:02:27,087 even if it does not contain any `.py` files. 2023-06-21T12:02:27,087 On the other hand, currently there is no concept of package data 2023-06-21T12:02:27,087 directory, all directories are treated like packages. 2023-06-21T12:02:27,087 ******************************************************************************** 2023-06-21T12:02:27,088 !! 2023-06-21T12:02:27,088 check.warn(importable) 2023-06-21T12:02:27,092 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration. 2023-06-21T12:02:27,092 !! 2023-06-21T12:02:27,092 ******************************************************************************** 2023-06-21T12:02:27,092 ############################ 2023-06-21T12:02:27,092 # Package would be ignored # 2023-06-21T12:02:27,093 ############################ 2023-06-21T12:02:27,093 Python recognizes 'pmx.extensions.pmx' as an importable package[^1], 2023-06-21T12:02:27,093 but it is absent from setuptools' `packages` configuration. 2023-06-21T12:02:27,093 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-21T12:02:27,093 package, please make sure that 'pmx.extensions.pmx' is explicitly added 2023-06-21T12:02:27,093 to the `packages` configuration field. 2023-06-21T12:02:27,093 Alternatively, you can also rely on setuptools' discovery methods 2023-06-21T12:02:27,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-21T12:02:27,094 instead of `find_packages(...)`/`find:`). 2023-06-21T12:02:27,094 You can read more about "package discovery" on setuptools documentation page: 2023-06-21T12:02:27,094 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-21T12:02:27,094 If you don't want 'pmx.extensions.pmx' to be distributed and are 2023-06-21T12:02:27,095 already explicitly excluding 'pmx.extensions.pmx' via 2023-06-21T12:02:27,095 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-21T12:02:27,095 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-21T12:02:27,095 combination with a more fine grained `package-data` configuration. 2023-06-21T12:02:27,095 You can read more about "package data files" on setuptools documentation page: 2023-06-21T12:02:27,095 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-21T12:02:27,096 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-21T12:02:27,096 even if it does not contain any `.py` files. 2023-06-21T12:02:27,096 On the other hand, currently there is no concept of package data 2023-06-21T12:02:27,096 directory, all directories are treated like packages. 2023-06-21T12:02:27,096 ******************************************************************************** 2023-06-21T12:02:27,096 !! 2023-06-21T12:02:27,096 check.warn(importable) 2023-06-21T12:02:27,097 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration. 2023-06-21T12:02:27,097 !! 2023-06-21T12:02:27,097 ******************************************************************************** 2023-06-21T12:02:27,097 ############################ 2023-06-21T12:02:27,097 # Package would be ignored # 2023-06-21T12:02:27,097 ############################ 2023-06-21T12:02:27,097 Python recognizes 'pmx.extensions.xdr' as an importable package[^1], 2023-06-21T12:02:27,098 but it is absent from setuptools' `packages` configuration. 2023-06-21T12:02:27,098 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-21T12:02:27,098 package, please make sure that 'pmx.extensions.xdr' is explicitly added 2023-06-21T12:02:27,098 to the `packages` configuration field. 2023-06-21T12:02:27,098 Alternatively, you can also rely on setuptools' discovery methods 2023-06-21T12:02:27,098 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-21T12:02:27,098 instead of `find_packages(...)`/`find:`). 2023-06-21T12:02:27,099 You can read more about "package discovery" on setuptools documentation page: 2023-06-21T12:02:27,099 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-21T12:02:27,099 If you don't want 'pmx.extensions.xdr' to be distributed and are 2023-06-21T12:02:27,099 already explicitly excluding 'pmx.extensions.xdr' via 2023-06-21T12:02:27,099 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-21T12:02:27,099 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-21T12:02:27,099 combination with a more fine grained `package-data` configuration. 2023-06-21T12:02:27,100 You can read more about "package data files" on setuptools documentation page: 2023-06-21T12:02:27,100 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-21T12:02:27,100 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-21T12:02:27,100 even if it does not contain any `.py` files. 2023-06-21T12:02:27,100 On the other hand, currently there is no concept of package data 2023-06-21T12:02:27,101 directory, all directories are treated like packages. 2023-06-21T12:02:27,101 ******************************************************************************** 2023-06-21T12:02:27,101 !! 2023-06-21T12:02:27,101 check.warn(importable) 2023-06-21T12:02:27,101 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration. 2023-06-21T12:02:27,101 !! 2023-06-21T12:02:27,101 ******************************************************************************** 2023-06-21T12:02:27,102 ############################ 2023-06-21T12:02:27,102 # Package would be ignored # 2023-06-21T12:02:27,102 ############################ 2023-06-21T12:02:27,102 Python recognizes 'pmx.scripts' as an importable package[^1], 2023-06-21T12:02:27,102 but it is absent from setuptools' `packages` configuration. 2023-06-21T12:02:27,102 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-21T12:02:27,102 package, please make sure that 'pmx.scripts' is explicitly added 2023-06-21T12:02:27,102 to the `packages` configuration field. 2023-06-21T12:02:27,103 Alternatively, you can also rely on setuptools' discovery methods 2023-06-21T12:02:27,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-21T12:02:27,103 instead of `find_packages(...)`/`find:`). 2023-06-21T12:02:27,103 You can read more about "package discovery" on setuptools documentation page: 2023-06-21T12:02:27,103 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-21T12:02:27,104 If you don't want 'pmx.scripts' to be distributed and are 2023-06-21T12:02:27,104 already explicitly excluding 'pmx.scripts' via 2023-06-21T12:02:27,104 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-21T12:02:27,104 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-21T12:02:27,104 combination with a more fine grained `package-data` configuration. 2023-06-21T12:02:27,104 You can read more about "package data files" on setuptools documentation page: 2023-06-21T12:02:27,104 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-21T12:02:27,105 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-21T12:02:27,105 even if it does not contain any `.py` files. 2023-06-21T12:02:27,105 On the other hand, currently there is no concept of package data 2023-06-21T12:02:27,105 directory, all directories are treated like packages. 2023-06-21T12:02:27,105 ******************************************************************************** 2023-06-21T12:02:27,105 !! 2023-06-21T12:02:27,106 check.warn(importable) 2023-06-21T12:02:27,106 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts.ligands' is absent from the `packages` configuration. 2023-06-21T12:02:27,106 !! 2023-06-21T12:02:27,106 ******************************************************************************** 2023-06-21T12:02:27,106 ############################ 2023-06-21T12:02:27,106 # Package would be ignored # 2023-06-21T12:02:27,106 ############################ 2023-06-21T12:02:27,106 Python recognizes 'pmx.scripts.ligands' as an importable package[^1], 2023-06-21T12:02:27,107 but it is absent from setuptools' `packages` configuration. 2023-06-21T12:02:27,107 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-21T12:02:27,107 package, please make sure that 'pmx.scripts.ligands' is explicitly added 2023-06-21T12:02:27,107 to the `packages` configuration field. 2023-06-21T12:02:27,107 Alternatively, you can also rely on setuptools' discovery methods 2023-06-21T12:02:27,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-21T12:02:27,107 instead of `find_packages(...)`/`find:`). 2023-06-21T12:02:27,108 You can read more about "package discovery" on setuptools documentation page: 2023-06-21T12:02:27,108 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-21T12:02:27,108 If you don't want 'pmx.scripts.ligands' to be distributed and are 2023-06-21T12:02:27,108 already explicitly excluding 'pmx.scripts.ligands' via 2023-06-21T12:02:27,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-21T12:02:27,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-21T12:02:27,109 combination with a more fine grained `package-data` configuration. 2023-06-21T12:02:27,109 You can read more about "package data files" on setuptools documentation page: 2023-06-21T12:02:27,109 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-21T12:02:27,109 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-21T12:02:27,109 even if it does not contain any `.py` files. 2023-06-21T12:02:27,110 On the other hand, currently there is no concept of package data 2023-06-21T12:02:27,110 directory, all directories are treated like packages. 2023-06-21T12:02:27,110 ******************************************************************************** 2023-06-21T12:02:27,110 !! 2023-06-21T12:02:27,110 check.warn(importable) 2023-06-21T12:02:27,110 creating build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-21T12:02:27,111 copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-21T12:02:27,386 copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-21T12:02:27,389 copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-21T12:02:27,393 copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-21T12:02:27,398 copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-21T12:02:27,403 copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-21T12:02:27,407 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-21T12:02:27,408 copying src/pmx/data/mutff45/atommass.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-21T12:02:27,410 copying src/pmx/data/mutff45/elements.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-21T12:02:27,412 copying src/pmx/data/mutff45/spc216.gro -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-21T12:02:27,415 copying src/pmx/data/mutff45/specbond.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-21T12:02:27,417 copying src/pmx/data/mutff45/xlateat.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-21T12:02:27,419 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,420 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,423 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,425 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,427 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,429 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,432 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,452 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,454 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,457 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,459 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,461 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,464 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,466 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,468 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,470 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,513 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,532 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,534 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,536 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,538 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,541 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,543 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,545 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,547 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,549 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,551 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,552 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,554 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,556 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,557 copying src/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,559 copying src/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,561 copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,563 copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,566 copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,568 copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,570 copying src/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,572 copying src/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,574 copying src/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,576 copying src/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,579 copying src/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,581 copying src/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,583 copying src/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,585 copying src/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,587 copying src/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,589 copying src/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,591 copying src/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,593 copying src/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,595 copying src/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,597 copying src/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,599 copying src/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,601 copying src/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,602 copying src/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:27,604 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,605 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,607 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,609 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,611 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,613 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,615 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,617 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,619 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,621 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,622 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,625 copying src/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,629 copying src/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,632 copying src/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,634 copying src/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,636 copying src/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,638 copying src/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,639 copying src/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,643 copying src/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,645 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,647 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,649 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,651 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,653 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,655 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,657 copying src/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,659 copying src/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,661 copying src/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,663 copying src/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,665 copying src/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,668 copying src/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,670 copying src/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:27,672 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm36mut.ff 2023-06-21T12:02:27,673 copying src/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm36mut.ff 2023-06-21T12:02:27,675 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna 2023-06-21T12:02:27,676 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,677 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,680 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,683 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,685 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,687 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,689 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,692 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,696 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,699 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,701 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,705 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,727 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,730 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,732 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,735 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,737 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,740 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,743 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,747 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,749 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,752 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,754 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,757 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,801 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,821 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,828 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,833 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,835 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,838 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,840 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,843 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,845 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,848 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,850 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,852 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,854 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,856 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,858 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,860 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,862 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:27,864 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,865 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,867 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,869 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,872 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,874 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,876 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,880 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,883 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,885 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,889 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,892 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,894 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,896 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,898 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,901 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,904 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,907 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,909 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,911 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,914 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,922 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,928 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,931 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,935 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,937 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,940 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,942 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,946 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,949 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,951 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,954 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,956 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,959 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,961 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,964 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:27,966 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,967 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,973 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,976 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,979 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,982 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,984 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,987 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,990 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,993 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:27,995 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,025 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,028 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,035 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,040 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,042 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,044 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,047 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,049 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,051 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:28,054 creating build/lib.linux-armv7l-cpython-39/pmx/extensions 2023-06-21T12:02:28,054 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-21T12:02:28,056 copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-21T12:02:28,059 copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-21T12:02:28,061 copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-21T12:02:28,064 copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-21T12:02:28,067 copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-21T12:02:28,069 copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-21T12:02:28,072 copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-21T12:02:28,074 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,076 copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,078 copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,082 copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,085 copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,089 copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,091 copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,094 copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,096 copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-21T12:02:28,098 creating build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-06-21T12:02:28,100 copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-06-21T12:02:28,103 creating build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-21T12:02:28,104 copying src/pmx/scripts/ligands/atoms_to_morph.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-21T12:02:28,108 copying src/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-21T12:02:28,112 copying src/pmx/scripts/ligands/build_mst_graph.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-21T12:02:28,115 copying src/pmx/scripts/ligands/make_hybrid.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-21T12:02:28,119 copying src/pmx/scripts/ligands/one_ff_file.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-21T12:02:28,122 UPDATING build/lib.linux-armv7l-cpython-39/pmx/_version.py 2023-06-21T12:02:28,128 set build/lib.linux-armv7l-cpython-39/pmx/_version.py to '4.0.1' 2023-06-21T12:02:28,128 running build_ext 2023-06-21T12:02:28,135 building 'pmx._pmx' extension 2023-06-21T12:02:28,136 creating build/temp.linux-armv7l-cpython-39 2023-06-21T12:02:28,136 creating build/temp.linux-armv7l-cpython-39/src 2023-06-21T12:02:28,137 creating build/temp.linux-armv7l-cpython-39/src/pmx 2023-06-21T12:02:28,138 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions 2023-06-21T12:02:28,139 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx 2023-06-21T12:02:28,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o 2023-06-21T12:02:29,088 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o 2023-06-21T12:02:29,401 src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’: 2023-06-21T12:02:29,402 src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-06-21T12:02:29,402 527 | int nx, ny, nz; 2023-06-21T12:02:29,402 | ^~ 2023-06-21T12:02:29,403 src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’: 2023-06-21T12:02:29,403 src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-06-21T12:02:29,403 586 | int nx, ny, nz; 2023-06-21T12:02:29,403 | ^~ 2023-06-21T12:02:31,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o 2023-06-21T12:02:31,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o 2023-06-21T12:02:32,715 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so 2023-06-21T12:02:32,841 building 'pmx._xdrio' extension 2023-06-21T12:02:32,842 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr 2023-06-21T12:02:32,842 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.9 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr/xdrfile.o 2023-06-21T12:02:32,885 src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment] 2023-06-21T12:02:32,885 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-06-21T12:02:32,885 | 2023-06-21T12:02:32,958 In file included from src/pmx/extensions/xdr/xdrfile.c:60: 2023-06-21T12:02:32,959 src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-06-21T12:02:32,959 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-06-21T12:02:32,959 | 2023-06-21T12:02:32,965 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’: 2023-06-21T12:02:32,965 src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-21T12:02:32,965 499 | while (size >= num && num_of_bits < 32) 2023-06-21T12:02:32,966 | ^~ 2023-06-21T12:02:32,966 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’: 2023-06-21T12:02:32,966 src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-21T12:02:32,966 545 | while (bytes[num_of_bytes] >= num) 2023-06-21T12:02:32,966 | ^~ 2023-06-21T12:02:32,967 src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’: 2023-06-21T12:02:32,967 src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-21T12:02:32,967 654 | if (num_of_bits >= num_of_bytes * 8) 2023-06-21T12:02:32,967 | ^~ 2023-06-21T12:02:32,968 src/pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-21T12:02:32,968 656 | for (i = 0; i < num_of_bytes; i++) 2023-06-21T12:02:32,968 | ^ 2023-06-21T12:02:32,968 src/pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-21T12:02:32,968 664 | for (i = 0; i < num_of_bytes-1; i++) 2023-06-21T12:02:32,968 | ^ 2023-06-21T12:02:32,968 src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’: 2023-06-21T12:02:32,969 src/pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-21T12:02:32,969 704 | if (lastbits < num_of_bits) 2023-06-21T12:02:32,969 | ^ 2023-06-21T12:02:32,971 src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-06-21T12:02:32,971 src/pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-21T12:02:32,971 814 | if(size3>xfp->buf1size) 2023-06-21T12:02:32,971 | ^ 2023-06-21T12:02:32,973 src/pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-21T12:02:32,973 866 | maxidx = (LASTIDXxfp->buf1size) 2023-06-21T12:02:32,978 | ^ 2023-06-21T12:02:32,982 src/pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-21T12:02:32,983 1133 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-06-21T12:02:32,983 | ^ 2023-06-21T12:02:32,983 src/pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-21T12:02:32,983 1139 | maxidx = (LASTIDXxfp->buf1size) 2023-06-21T12:02:32,989 | ^ 2023-06-21T12:02:32,991 src/pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-21T12:02:32,991 1366 | maxidx = (LASTIDXxfp->buf1size) { 2023-06-21T12:02:32,997 | ^ 2023-06-21T12:02:33,004 src/pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-21T12:02:33,004 1617 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-06-21T12:02:33,004 | ^ 2023-06-21T12:02:33,005 src/pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-21T12:02:33,005 1622 | maxidx = (LASTIDX build/bdist.linux-armv7l/wheel/pmx 2023-06-21T12:02:36,154 copying build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-06-21T12:02:36,161 creating build/bdist.linux-armv7l/wheel/pmx/extensions 2023-06-21T12:02:36,162 creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-21T12:02:36,163 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-21T12:02:36,165 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-21T12:02:36,167 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-21T12:02:36,170 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-21T12:02:36,172 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-21T12:02:36,175 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-21T12:02:36,177 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-21T12:02:36,180 creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,181 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,183 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,187 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,189 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,191 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,194 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,196 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,198 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-21T12:02:36,200 copying build/lib.linux-armv7l-cpython-39/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx 2023-06-21T12:02:36,203 creating build/bdist.linux-armv7l/wheel/pmx/data 2023-06-21T12:02:36,203 copying build/lib.linux-armv7l-cpython-39/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-21T12:02:36,207 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-21T12:02:36,213 copying build/lib.linux-armv7l-cpython-39/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-21T12:02:36,215 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-21T12:02:36,221 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna 2023-06-21T12:02:36,223 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,224 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,226 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,227 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,255 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,257 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,259 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,314 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,333 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,335 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,337 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,338 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,341 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,342 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,344 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,346 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,348 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,351 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,355 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,357 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,359 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,360 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,364 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,366 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,368 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,369 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,380 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,382 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,383 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,386 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,389 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,390 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,392 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,395 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,396 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,398 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,401 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,402 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,404 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,406 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,408 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-21T12:02:36,411 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,412 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,413 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,415 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,417 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,418 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,420 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,422 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,426 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,427 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,429 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,447 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,449 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,453 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,454 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,461 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,462 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,465 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,466 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,468 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-21T12:02:36,470 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,471 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,473 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,475 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,476 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,479 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,480 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,482 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,484 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,487 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,488 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,490 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,492 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,494 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,497 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,501 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,502 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,504 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,506 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,511 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,513 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,516 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,518 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,531 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,534 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,536 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,539 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,542 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,546 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,548 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,551 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,554 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,556 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,558 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,560 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,562 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,565 copying build/lib.linux-armv7l-cpython-39/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-21T12:02:36,834 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-21T12:02:36,835 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-21T12:02:36,838 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,839 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,841 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,843 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,845 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,847 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,849 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,851 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,853 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,855 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,857 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,859 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,861 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,863 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,865 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,867 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,869 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,873 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,875 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,877 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,878 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,880 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,885 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,887 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,889 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,892 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,894 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,896 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,898 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,900 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,903 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,905 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-21T12:02:36,907 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-21T12:02:36,909 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-21T12:02:36,911 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,913 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,915 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,918 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,920 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,921 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,923 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,926 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,927 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,930 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,932 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,934 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,936 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,938 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,940 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,942 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,944 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,946 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,948 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,950 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,952 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,955 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,958 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,960 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-21T12:02:36,962 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-21T12:02:36,964 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff 2023-06-21T12:02:36,965 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff 2023-06-21T12:02:36,968 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,969 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,971 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,972 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,992 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:36,994 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,040 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,061 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,062 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,064 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,065 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,067 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,070 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,072 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,073 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,075 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,077 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,079 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,080 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,082 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,084 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,087 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,089 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,091 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,093 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,095 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,097 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,099 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,101 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-21T12:02:37,102 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-21T12:02:37,105 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-21T12:02:37,110 creating build/bdist.linux-armv7l/wheel/pmx/scripts 2023-06-21T12:02:37,111 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-06-21T12:02:37,114 creating build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-21T12:02:37,115 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/build_mst_graph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-21T12:02:37,118 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/make_hybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-21T12:02:37,121 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/atoms_to_morph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-21T12:02:37,124 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/one_ff_file.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-21T12:02:37,126 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-21T12:02:37,129 running install_egg_info 2023-06-21T12:02:37,159 Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-4.0.1-py3.9.egg-info 2023-06-21T12:02:37,173 running install_scripts 2023-06-21T12:02:37,224 creating build/bdist.linux-armv7l/wheel/pmx_biobb-4.0.1.dist-info/WHEEL 2023-06-21T12:02:37,227 creating '/tmp/pip-wheel-bi1rkki4/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-21T12:02:37,267 adding 'pmx/_pmx.cpython-39-arm-linux-gnueabihf.so' 2023-06-21T12:02:37,270 adding 'pmx/_version.py' 2023-06-21T12:02:37,297 adding 'pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so' 2023-06-21T12:02:39,167 adding 'pmx/data/bbdep.pkl' 2023-06-21T12:02:39,275 adding 'pmx/data/blosum62_new.mat' 2023-06-21T12:02:39,290 adding 'pmx/data/bp.pkl' 2023-06-21T12:02:39,311 adding 'pmx/data/bp_amber.pkl' 2023-06-21T12:02:39,332 adding 'pmx/data/bp_charmm.pkl' 2023-06-21T12:02:39,341 adding 'pmx/data/rna.pkl' 2023-06-21T12:02:39,344 adding 'pmx/data/mutff45/atommass.dat' 2023-06-21T12:02:39,345 adding 'pmx/data/mutff45/elements.dat' 2023-06-21T12:02:39,352 adding 'pmx/data/mutff45/spc216.gro' 2023-06-21T12:02:39,353 adding 'pmx/data/mutff45/specbond.dat' 2023-06-21T12:02:39,354 adding 'pmx/data/mutff45/xlateat.dat' 2023-06-21T12:02:39,356 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-06-21T12:02:39,358 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-06-21T12:02:39,359 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-06-21T12:02:39,361 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-06-21T12:02:39,362 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-06-21T12:02:39,424 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres' 2023-06-21T12:02:39,433 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn' 2023-06-21T12:02:39,434 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-06-21T12:02:39,435 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-06-21T12:02:39,438 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-06-21T12:02:39,442 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp' 2023-06-21T12:02:39,444 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-06-21T12:02:39,445 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-06-21T12:02:39,446 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp' 2023-06-21T12:02:39,606 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp' 2023-06-21T12:02:39,688 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp' 2023-06-21T12:02:39,697 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn' 2023-06-21T12:02:39,698 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-06-21T12:02:39,700 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-06-21T12:02:39,703 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-06-21T12:02:39,704 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp' 2023-06-21T12:02:39,705 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp' 2023-06-21T12:02:39,707 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-06-21T12:02:39,708 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-06-21T12:02:39,709 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-06-21T12:02:39,711 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-06-21T12:02:39,712 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp' 2023-06-21T12:02:39,713 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-06-21T12:02:39,715 adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.am' 2023-06-21T12:02:39,717 adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.in' 2023-06-21T12:02:39,719 adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb' 2023-06-21T12:02:39,720 adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb' 2023-06-21T12:02:39,721 adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb' 2023-06-21T12:02:39,723 adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd' 2023-06-21T12:02:39,724 adding 'pmx/data/mutff45/amber99sbmut.ff/dna.arn' 2023-06-21T12:02:39,725 adding 'pmx/data/mutff45/amber99sbmut.ff/dna.hdb' 2023-06-21T12:02:39,726 adding 'pmx/data/mutff45/amber99sbmut.ff/dna.r2b' 2023-06-21T12:02:39,729 adding 'pmx/data/mutff45/amber99sbmut.ff/dna.rtp' 2023-06-21T12:02:39,730 adding 'pmx/data/mutff45/amber99sbmut.ff/gbsa.itp' 2023-06-21T12:02:39,732 adding 'pmx/data/mutff45/amber99sbmut.ff/rna.arn' 2023-06-21T12:02:39,733 adding 'pmx/data/mutff45/amber99sbmut.ff/rna.hdb' 2023-06-21T12:02:39,734 adding 'pmx/data/mutff45/amber99sbmut.ff/rna.r2b' 2023-06-21T12:02:39,736 adding 'pmx/data/mutff45/amber99sbmut.ff/rna.rtp' 2023-06-21T12:02:39,738 adding 'pmx/data/mutff45/amber99sbmut.ff/spc.itp' 2023-06-21T12:02:39,739 adding 'pmx/data/mutff45/amber99sbmut.ff/spce.itp' 2023-06-21T12:02:39,740 adding 'pmx/data/mutff45/amber99sbmut.ff/tip3p.itp' 2023-06-21T12:02:39,742 adding 'pmx/data/mutff45/amber99sbmut.ff/tip4p.itp' 2023-06-21T12:02:39,743 adding 'pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp' 2023-06-21T12:02:39,744 adding 'pmx/data/mutff45/amber99sbmut.ff/tip5p.itp' 2023-06-21T12:02:39,745 adding 'pmx/data/mutff45/amber99sbmut.ff/urea.itp' 2023-06-21T12:02:39,747 adding 'pmx/data/mutff45/amber99sbmut.ff/watermodels.dat' 2023-06-21T12:02:39,749 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn' 2023-06-21T12:02:39,750 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb' 2023-06-21T12:02:39,752 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb' 2023-06-21T12:02:39,753 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b' 2023-06-21T12:02:39,755 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd' 2023-06-21T12:02:39,756 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.arn' 2023-06-21T12:02:39,758 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb' 2023-06-21T12:02:39,759 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.hdb' 2023-06-21T12:02:39,760 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb' 2023-06-21T12:02:39,762 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.rtp' 2023-06-21T12:02:39,769 adding 'pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp' 2023-06-21T12:02:39,774 adding 'pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp' 2023-06-21T12:02:39,776 adding 'pmx/data/mutff45/charmm22starmut.ff/forcefield.itp' 2023-06-21T12:02:39,777 adding 'pmx/data/mutff45/charmm22starmut.ff/gb.itp' 2023-06-21T12:02:39,778 adding 'pmx/data/mutff45/charmm22starmut.ff/ions.itp' 2023-06-21T12:02:39,779 adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.hdb' 2023-06-21T12:02:39,784 adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.rtp' 2023-06-21T12:02:39,785 adding 'pmx/data/mutff45/charmm22starmut.ff/mutres.arn' 2023-06-21T12:02:39,786 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.arn' 2023-06-21T12:02:39,788 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb' 2023-06-21T12:02:39,789 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.hdb' 2023-06-21T12:02:39,790 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb' 2023-06-21T12:02:39,791 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.r2b' 2023-06-21T12:02:39,793 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.rtp' 2023-06-21T12:02:39,794 adding 'pmx/data/mutff45/charmm22starmut.ff/spc.itp' 2023-06-21T12:02:39,795 adding 'pmx/data/mutff45/charmm22starmut.ff/spce.itp' 2023-06-21T12:02:39,797 adding 'pmx/data/mutff45/charmm22starmut.ff/tip3p.itp' 2023-06-21T12:02:39,798 adding 'pmx/data/mutff45/charmm22starmut.ff/tip4p.itp' 2023-06-21T12:02:39,799 adding 'pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp' 2023-06-21T12:02:39,801 adding 'pmx/data/mutff45/charmm22starmut.ff/tip5p.itp' 2023-06-21T12:02:39,802 adding 'pmx/data/mutff45/charmm22starmut.ff/watermodels.dat' 2023-06-21T12:02:39,804 adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.arn' 2023-06-21T12:02:39,808 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn' 2023-06-21T12:02:39,810 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup' 2023-06-21T12:02:39,811 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb' 2023-06-21T12:02:39,813 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb' 2023-06-21T12:02:39,814 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb' 2023-06-21T12:02:39,815 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b' 2023-06-21T12:02:39,824 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp' 2023-06-21T12:02:39,826 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd' 2023-06-21T12:02:39,828 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp' 2023-06-21T12:02:39,832 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-06-21T12:02:39,895 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres' 2023-06-21T12:02:39,906 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp' 2023-06-21T12:02:39,908 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn' 2023-06-21T12:02:39,909 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb' 2023-06-21T12:02:39,910 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b' 2023-06-21T12:02:39,913 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp' 2023-06-21T12:02:39,915 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp' 2023-06-21T12:02:39,920 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp' 2023-06-21T12:02:39,922 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp' 2023-06-21T12:02:39,923 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp' 2023-06-21T12:02:39,924 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp' 2023-06-21T12:02:39,926 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp' 2023-06-21T12:02:40,085 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp' 2023-06-21T12:02:40,164 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp' 2023-06-21T12:02:40,190 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp' 2023-06-21T12:02:40,200 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp' 2023-06-21T12:02:40,203 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp' 2023-06-21T12:02:40,206 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp' 2023-06-21T12:02:40,207 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn' 2023-06-21T12:02:40,209 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb' 2023-06-21T12:02:40,210 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b' 2023-06-21T12:02:40,212 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp' 2023-06-21T12:02:40,214 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp' 2023-06-21T12:02:40,215 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp' 2023-06-21T12:02:40,216 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp' 2023-06-21T12:02:40,218 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp' 2023-06-21T12:02:40,219 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp' 2023-06-21T12:02:40,220 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp' 2023-06-21T12:02:40,222 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp' 2023-06-21T12:02:40,223 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat' 2023-06-21T12:02:40,225 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn' 2023-06-21T12:02:40,226 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-06-21T12:02:40,228 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-06-21T12:02:40,229 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-06-21T12:02:40,231 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-06-21T12:02:40,239 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp' 2023-06-21T12:02:40,241 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-06-21T12:02:40,243 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp' 2023-06-21T12:02:40,247 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-06-21T12:02:40,251 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp' 2023-06-21T12:02:40,253 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn' 2023-06-21T12:02:40,254 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-06-21T12:02:40,255 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-06-21T12:02:40,258 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-06-21T12:02:40,260 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp' 2023-06-21T12:02:40,262 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp' 2023-06-21T12:02:40,263 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-06-21T12:02:40,265 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-06-21T12:02:40,266 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp' 2023-06-21T12:02:40,284 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp' 2023-06-21T12:02:40,294 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp' 2023-06-21T12:02:40,297 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp' 2023-06-21T12:02:40,300 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp' 2023-06-21T12:02:40,301 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn' 2023-06-21T12:02:40,302 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-06-21T12:02:40,303 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-06-21T12:02:40,306 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-06-21T12:02:40,307 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp' 2023-06-21T12:02:40,309 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp' 2023-06-21T12:02:40,310 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-06-21T12:02:40,311 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-06-21T12:02:40,313 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-06-21T12:02:40,314 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-06-21T12:02:40,315 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp' 2023-06-21T12:02:40,317 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-06-21T12:02:40,330 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp' 2023-06-21T12:02:40,332 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp' 2023-06-21T12:02:40,333 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp' 2023-06-21T12:02:40,335 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp' 2023-06-21T12:02:40,336 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn' 2023-06-21T12:02:40,337 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb' 2023-06-21T12:02:40,339 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb' 2023-06-21T12:02:40,340 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb' 2023-06-21T12:02:40,341 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b' 2023-06-21T12:02:40,481 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp' 2023-06-21T12:02:40,489 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd' 2023-06-21T12:02:40,507 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp' 2023-06-21T12:02:40,516 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp' 2023-06-21T12:02:40,518 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp' 2023-06-21T12:02:40,519 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp' 2023-06-21T12:02:40,521 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp' 2023-06-21T12:02:40,522 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp' 2023-06-21T12:02:40,523 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp' 2023-06-21T12:02:40,524 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat' 2023-06-21T12:02:40,527 adding 'pmx/extensions/pmx/Energy.c' 2023-06-21T12:02:40,530 adding 'pmx/extensions/pmx/Geometry.c' 2023-06-21T12:02:40,533 adding 'pmx/extensions/pmx/Geometry.h' 2023-06-21T12:02:40,534 adding 'pmx/extensions/pmx/cpp_test.cpp' 2023-06-21T12:02:40,536 adding 'pmx/extensions/pmx/init.c' 2023-06-21T12:02:40,537 adding 'pmx/extensions/pmx/pmx.h' 2023-06-21T12:02:40,540 adding 'pmx/extensions/pmx/wrap_Geometry.c' 2023-06-21T12:02:40,542 adding 'pmx/extensions/xdr/trr2xtc.c' 2023-06-21T12:02:40,549 adding 'pmx/extensions/xdr/xdrfile.c' 2023-06-21T12:02:40,552 adding 'pmx/extensions/xdr/xdrfile.h' 2023-06-21T12:02:40,554 adding 'pmx/extensions/xdr/xdrfile_c_test.c' 2023-06-21T12:02:40,556 adding 'pmx/extensions/xdr/xdrfile_trr.c' 2023-06-21T12:02:40,558 adding 'pmx/extensions/xdr/xdrfile_trr.h' 2023-06-21T12:02:40,559 adding 'pmx/extensions/xdr/xdrfile_xtc.c' 2023-06-21T12:02:40,560 adding 'pmx/extensions/xdr/xdrfile_xtc.h' 2023-06-21T12:02:40,564 adding 'pmx/scripts/md_setup.py' 2023-06-21T12:02:40,573 adding 'pmx/scripts/ligands/atoms_to_morph.py' 2023-06-21T12:02:40,583 adding 'pmx/scripts/ligands/atoms_to_morph_rdkit2018.py' 2023-06-21T12:02:40,587 adding 'pmx/scripts/ligands/build_mst_graph.py' 2023-06-21T12:02:40,592 adding 'pmx/scripts/ligands/make_hybrid.py' 2023-06-21T12:02:40,594 adding 'pmx/scripts/ligands/one_ff_file.py' 2023-06-21T12:02:40,596 adding 'pmx_biobb-4.0.1.dist-info/LICENSE' 2023-06-21T12:02:40,598 adding 'pmx_biobb-4.0.1.dist-info/METADATA' 2023-06-21T12:02:40,599 adding 'pmx_biobb-4.0.1.dist-info/WHEEL' 2023-06-21T12:02:40,600 adding 'pmx_biobb-4.0.1.dist-info/entry_points.txt' 2023-06-21T12:02:40,601 adding 'pmx_biobb-4.0.1.dist-info/top_level.txt' 2023-06-21T12:02:40,604 adding 'pmx_biobb-4.0.1.dist-info/RECORD' 2023-06-21T12:02:40,655 removing build/bdist.linux-armv7l/wheel 2023-06-21T12:02:40,811 Building wheel for pmx-biobb (setup.py): finished with status 'done' 2023-06-21T12:02:40,856 Created wheel for pmx-biobb: filename=pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl size=4257342 sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 2023-06-21T12:02:40,858 Stored in directory: /tmp/pip-ephem-wheel-cache-ehgkitn2/wheels/1a/2b/16/5d1d7bff310402de07ed7e83de20f3d33b58d46d0ffd68daa5 2023-06-21T12:02:40,878 Successfully built pmx-biobb 2023-06-21T12:02:40,992 Removed build tracker: '/tmp/pip-build-tracker-z5g1x93l'