2023-06-22T06:43:47,597 Created temporary directory: /tmp/pip-build-tracker-35y447dy 2023-06-22T06:43:47,598 Initialized build tracking at /tmp/pip-build-tracker-35y447dy 2023-06-22T06:43:47,599 Created build tracker: /tmp/pip-build-tracker-35y447dy 2023-06-22T06:43:47,599 Entered build tracker: /tmp/pip-build-tracker-35y447dy 2023-06-22T06:43:47,599 Created temporary directory: /tmp/pip-wheel-i6ii94x2 2023-06-22T06:43:47,602 Created temporary directory: /tmp/pip-ephem-wheel-cache-_acpjxhr 2023-06-22T06:43:47,626 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-22T06:43:47,629 2 location(s) to search for versions of altocumulus: 2023-06-22T06:43:47,629 * https://pypi.org/simple/altocumulus/ 2023-06-22T06:43:47,629 * https://www.piwheels.org/simple/altocumulus/ 2023-06-22T06:43:47,629 Fetching project page and analyzing links: https://pypi.org/simple/altocumulus/ 2023-06-22T06:43:47,630 Getting page https://pypi.org/simple/altocumulus/ 2023-06-22T06:43:47,631 Found index url https://pypi.org/simple/ 2023-06-22T06:43:47,700 Fetched page https://pypi.org/simple/altocumulus/ as application/vnd.pypi.simple.v1+json 2023-06-22T06:43:47,705 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/09/5d/0b244b044b38f8ec9cfa845a3cba04c573a67d7ccf1c6a8c04baea364ec0/altocumulus-1.0.0-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,706 Found link https://files.pythonhosted.org/packages/9b/52/23d85d485cf003959d038964e833c5780e57d9bee631d6e59929eff8a653/altocumulus-1.0.0.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.0.0 2023-06-22T06:43:47,706 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ab/14/e585532cdd2355e8552f02661b96cbc6303cb14e5a8b2ed84b35c4b26c11/altocumulus-1.1.0-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,707 Found link https://files.pythonhosted.org/packages/cd/d3/a0f9430e9329c46e1116825e04b36595cbedea5e6ea4890e89ba916becf7/altocumulus-1.1.0.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.1.0 2023-06-22T06:43:47,707 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/5b/58/5cd013ad4d060074d66bdd12dd816040fac29abf103656c6f0f8f21f4101/altocumulus-1.1.1-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,707 Found link https://files.pythonhosted.org/packages/4d/f2/8eecb7a86aae1dc170c70db1f0fcdcd668871e0f13d54d544062e66c5c83/altocumulus-1.1.1.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.1.1 2023-06-22T06:43:47,708 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/b0/2b/1114389da7745bbaa0cc5a9a64fb86ce44c16176cdd1e4b9f7a851014d74/altocumulus-2.0.0-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,708 Found link https://files.pythonhosted.org/packages/a6/83/bcd960f5d957669bb8c217d9c9996ecd3204ef87c138b570b81d403b4132/altocumulus-2.0.0.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.0 2023-06-22T06:43:47,708 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ef/54/b9e37bb8875663ebb97aca019b6756912139181e60c0d9926ee91962750a/altocumulus-2.0.1-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,709 Found link https://files.pythonhosted.org/packages/f7/46/dfa9702222dbc6c41f8876f53b705a2ccf5f56f9056fc441c972559dd97c/altocumulus-2.0.1.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.1 2023-06-22T06:43:47,709 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/16/a1/4e83b0a14b19dad7ad67102ff2452156d630f22a3db6193284dd6ff617b8/altocumulus-2.0.2-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,710 Found link https://files.pythonhosted.org/packages/15/96/a7ea3de17b028a343e7f98ffb5015584f32577496836dff06a75aac7a4d2/altocumulus-2.0.2.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.2 2023-06-22T06:43:47,710 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/05/f3/a9bea6f2f7ee2c792be761a2d924a5fbfcc337c187a0f36efa13743cd91c/altocumulus-2.0.3rc2-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,711 Found link https://files.pythonhosted.org/packages/79/86/d13df014d4aa35f67200217164c4c431d1882fc611cad36e36f192cd65da/altocumulus-2.0.3rc2.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3rc2 2023-06-22T06:43:47,711 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/f7/0a/e8c65b16a72488df427e3e4a672b711fa37fe03864a37ea6f28154d62af2/altocumulus-2.0.3-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,711 Found link https://files.pythonhosted.org/packages/f1/a4/8967cf2efee181f840262d97502b50fec6daa3f64e006a7da71bd2b98f32/altocumulus-2.0.3.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3 2023-06-22T06:43:47,712 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/42/1c/84d3abed1f49954500d8d3c1a4967bb77535ec2071e5c8ab678394dc5bad/altocumulus-2.1.0-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8) 2023-06-22T06:43:47,712 Found link https://files.pythonhosted.org/packages/40/b8/ccbd0bc3dd767591f3a103b59467df99d2a04b1a29892a4d4573059dc71c/altocumulus-2.1.0.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.0 2023-06-22T06:43:47,712 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/f0/1c/e789a37c124c225327a16f07aeb8cb1df3ad911133d275de7c6a5b1c94f8/altocumulus-2.1.1-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8) 2023-06-22T06:43:47,713 Found link https://files.pythonhosted.org/packages/43/5d/7b88e06a5c19f092f479cec18a74f0ba114135ff4786c30f088fdf9e83dc/altocumulus-2.1.1.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.1 2023-06-22T06:43:47,713 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/35/79/c554ad491b52e431cead07387e5a8c4d338b46d8c30889b1e21a5ad30a9f/altocumulus-2.1.2-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8) 2023-06-22T06:43:47,714 Found link https://files.pythonhosted.org/packages/3f/96/17813b8697094a3afca3a000ae8c55eb10d91def820a5201c28043c0b931/altocumulus-2.1.2.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.2 2023-06-22T06:43:47,714 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ee/79/6bcc4f84a68b90a6c217aa45d62648e994e5f0d5198ba06c47074434fecd/altocumulus-2.3.0-py3-none-any.whl (from https://pypi.org/simple/altocumulus/) (requires-python:>=3.8) 2023-06-22T06:43:47,715 Found link https://files.pythonhosted.org/packages/54/73/2a0d9600525406d13f9310b25ea2b92b3551dfa7a2c5db90d54ee2bba58c/altocumulus-2.3.0.tar.gz (from https://pypi.org/simple/altocumulus/) (requires-python:>=3.8), version: 2.3.0 2023-06-22T06:43:47,715 Fetching project page and analyzing links: https://www.piwheels.org/simple/altocumulus/ 2023-06-22T06:43:47,715 Getting page https://www.piwheels.org/simple/altocumulus/ 2023-06-22T06:43:47,716 Found index url https://www.piwheels.org/simple/ 2023-06-22T06:43:47,879 Fetched page https://www.piwheels.org/simple/altocumulus/ as text/html 2023-06-22T06:43:47,883 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.1.2-py3-none-any.whl#sha256=7151f5adf0b58b4868508be6a2c7ca9613c86d95878299abd62d462c6b2b31f0 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3.8) 2023-06-22T06:43:47,883 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.1.1-py3-none-any.whl#sha256=fe48bca28a77907e9b690d7fd0116393c6d9ee0a892c5538d7f5747111ecf0e2 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3.8) 2023-06-22T06:43:47,883 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.1.0-py3-none-any.whl#sha256=c9ebb6759ad8b9adbbe22c9beefd065e8d1243842068eef76fc57cbfce15d005 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3.8) 2023-06-22T06:43:47,884 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3-py3-none-any.whl#sha256=46f961cfb6d73de6a94b374526fd174bb2c74d158a42a80845c233d21fa30b44 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,884 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3rc2-py3-none-any.whl#sha256=fd5ad8267f381ce8e009870ce1cab5e8c3380d6aa2f639e9a9d203f308eb24b2 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,884 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.2-py3-none-any.whl#sha256=9b84ef41234cb17b0f5191b223fc30fcda025c111e328390b7859982c4290d16 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,884 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.1-py3-none-any.whl#sha256=d57fb443288d95954c54ee58dd5acd0ddbf5a04f46f193014e8e0644c9987eb8 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,884 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.0-py3-none-any.whl#sha256=91ca330ce1605c7e3e28b071db20d5ba04a4efe913b11e3fb652a52a7cc2cdab (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,885 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.1.1-py3-none-any.whl#sha256=86749f39b1a75e769a544863a18b6fb10700c76da20ab7283556741adf596f8c (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,885 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.1.0-py3-none-any.whl#sha256=3d42d814adacda078456bfeef866aa672d6cccf7de5c0942530038f62d438625 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,885 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.0.0-py3-none-any.whl#sha256=2de884a46f3f34f241e49bb5e0f50cdcdbd0bafa7b61d706d87820c51c447732 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2023-06-22T06:43:47,885 Skipping link: not a file: https://www.piwheels.org/simple/altocumulus/ 2023-06-22T06:43:47,885 Skipping link: not a file: https://pypi.org/simple/altocumulus/ 2023-06-22T06:43:47,904 Given no hashes to check 1 links for project 'altocumulus': discarding no candidates 2023-06-22T06:43:47,921 Collecting altocumulus==2.3.0 2023-06-22T06:43:47,923 Created temporary directory: /tmp/pip-unpack-kapykis8 2023-06-22T06:43:48,046 Downloading altocumulus-2.3.0.tar.gz (75 kB) 2023-06-22T06:43:48,257 Added altocumulus==2.3.0 from https://files.pythonhosted.org/packages/54/73/2a0d9600525406d13f9310b25ea2b92b3551dfa7a2c5db90d54ee2bba58c/altocumulus-2.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-35y447dy' 2023-06-22T06:43:48,265 Created temporary directory: /tmp/pip-build-env-e71p1uvh 2023-06-22T06:43:48,275 Installing build dependencies: started 2023-06-22T06:43:48,276 Running command pip subprocess to install build dependencies 2023-06-22T06:43:49,489 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-06-22T06:43:49,856 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-22T06:43:51,514 Collecting setuptools>=42 2023-06-22T06:43:51,580 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-06-22T06:43:51,830 Collecting wheel 2023-06-22T06:43:51,849 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-06-22T06:43:52,176 Collecting setuptools_scm[toml]>=3.4 2023-06-22T06:43:52,195 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB) 2023-06-22T06:43:52,559 Collecting packaging>=20.0 (from setuptools_scm[toml]>=3.4) 2023-06-22T06:43:52,576 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-06-22T06:43:52,702 Collecting typing-extensions (from setuptools_scm[toml]>=3.4) 2023-06-22T06:43:52,720 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.6.3-py3-none-any.whl (31 kB) 2023-06-22T06:43:52,836 Collecting tomli>=1.0.0 (from setuptools_scm[toml]>=3.4) 2023-06-22T06:43:52,853 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2023-06-22T06:43:54,538 Installing collected packages: wheel, typing-extensions, tomli, setuptools, packaging, setuptools_scm 2023-06-22T06:43:54,763 Creating /tmp/pip-build-env-e71p1uvh/overlay/bin 2023-06-22T06:43:54,765 changing mode of /tmp/pip-build-env-e71p1uvh/overlay/bin/wheel to 755 2023-06-22T06:43:57,378 Successfully installed packaging-23.1 setuptools-68.0.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.6.3 wheel-0.40.0 2023-06-22T06:43:57,667 Installing build dependencies: finished with status 'done' 2023-06-22T06:43:57,672 Getting requirements to build wheel: started 2023-06-22T06:43:57,673 Running command Getting requirements to build wheel 2023-06-22T06:43:58,286 /tmp/pip-build-env-e71p1uvh/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-22T06:43:58,286 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-22T06:43:58,696 running egg_info 2023-06-22T06:43:58,702 writing altocumulus.egg-info/PKG-INFO 2023-06-22T06:43:58,705 writing dependency_links to altocumulus.egg-info/dependency_links.txt 2023-06-22T06:43:58,707 writing entry points to altocumulus.egg-info/entry_points.txt 2023-06-22T06:43:58,708 writing requirements to altocumulus.egg-info/requires.txt 2023-06-22T06:43:58,710 writing top-level names to altocumulus.egg-info/top_level.txt 2023-06-22T06:43:58,754 listing git files failed - pretending there aren't any 2023-06-22T06:43:58,763 reading manifest file 'altocumulus.egg-info/SOURCES.txt' 2023-06-22T06:43:58,769 reading manifest template 'MANIFEST.in' 2023-06-22T06:43:58,777 no previously-included directories found matching 'alto/tests' 2023-06-22T06:43:58,777 adding license file 'LICENSE' 2023-06-22T06:43:58,784 writing manifest file 'altocumulus.egg-info/SOURCES.txt' 2023-06-22T06:43:58,897 Getting requirements to build wheel: finished with status 'done' 2023-06-22T06:43:58,907 Created temporary directory: /tmp/pip-modern-metadata-29ccdp4x 2023-06-22T06:43:58,910 Preparing metadata (pyproject.toml): started 2023-06-22T06:43:58,911 Running command Preparing metadata (pyproject.toml) 2023-06-22T06:43:59,467 /tmp/pip-build-env-e71p1uvh/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-22T06:43:59,467 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-22T06:43:59,824 running dist_info 2023-06-22T06:43:59,831 creating /tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info 2023-06-22T06:43:59,838 writing /tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info/PKG-INFO 2023-06-22T06:43:59,841 writing dependency_links to /tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info/dependency_links.txt 2023-06-22T06:43:59,843 writing entry points to /tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info/entry_points.txt 2023-06-22T06:43:59,845 writing requirements to /tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info/requires.txt 2023-06-22T06:43:59,846 writing top-level names to /tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info/top_level.txt 2023-06-22T06:43:59,847 writing manifest file '/tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info/SOURCES.txt' 2023-06-22T06:43:59,889 listing git files failed - pretending there aren't any 2023-06-22T06:43:59,897 reading manifest file '/tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info/SOURCES.txt' 2023-06-22T06:43:59,900 reading manifest template 'MANIFEST.in' 2023-06-22T06:43:59,907 no previously-included directories found matching 'alto/tests' 2023-06-22T06:43:59,907 adding license file 'LICENSE' 2023-06-22T06:43:59,912 writing manifest file '/tmp/pip-modern-metadata-29ccdp4x/altocumulus.egg-info/SOURCES.txt' 2023-06-22T06:43:59,913 creating '/tmp/pip-modern-metadata-29ccdp4x/altocumulus-2.3.0.dist-info' 2023-06-22T06:44:00,072 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-22T06:44:00,078 Source in /tmp/pip-wheel-i6ii94x2/altocumulus_d5c5e47d826b459681f771b5eaa88d5c has version 2.3.0, which satisfies requirement altocumulus==2.3.0 from https://files.pythonhosted.org/packages/54/73/2a0d9600525406d13f9310b25ea2b92b3551dfa7a2c5db90d54ee2bba58c/altocumulus-2.3.0.tar.gz 2023-06-22T06:44:00,079 Removed altocumulus==2.3.0 from https://files.pythonhosted.org/packages/54/73/2a0d9600525406d13f9310b25ea2b92b3551dfa7a2c5db90d54ee2bba58c/altocumulus-2.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-35y447dy' 2023-06-22T06:44:00,085 Created temporary directory: /tmp/pip-unpack-9y8jpi66 2023-06-22T06:44:00,086 Building wheels for collected packages: altocumulus 2023-06-22T06:44:00,090 Created temporary directory: /tmp/pip-wheel-w1zry8oe 2023-06-22T06:44:00,090 Destination directory: /tmp/pip-wheel-w1zry8oe 2023-06-22T06:44:00,093 Building wheel for altocumulus (pyproject.toml): started 2023-06-22T06:44:00,094 Running command Building wheel for altocumulus (pyproject.toml) 2023-06-22T06:44:00,611 /tmp/pip-build-env-e71p1uvh/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-22T06:44:00,612 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-22T06:44:00,949 running bdist_wheel 2023-06-22T06:44:00,970 running build 2023-06-22T06:44:00,971 running build_py 2023-06-22T06:44:00,977 creating build 2023-06-22T06:44:00,978 creating build/lib 2023-06-22T06:44:00,979 creating build/lib/alto 2023-06-22T06:44:00,980 copying alto/__main__.py -> build/lib/alto 2023-06-22T06:44:00,982 copying alto/__init__.py -> build/lib/alto 2023-06-22T06:44:00,984 creating build/lib/alto/utils 2023-06-22T06:44:00,985 copying alto/utils/dockstore_utils.py -> build/lib/alto/utils 2023-06-22T06:44:00,987 copying alto/utils/bcl_utils.py -> build/lib/alto/utils 2023-06-22T06:44:00,989 copying alto/utils/fastq_utils.py -> build/lib/alto/utils 2023-06-22T06:44:00,991 copying alto/utils/firecloud_utils.py -> build/lib/alto/utils 2023-06-22T06:44:00,994 copying alto/utils/__init__.py -> build/lib/alto/utils 2023-06-22T06:44:00,995 copying alto/utils/io_utils.py -> build/lib/alto/utils 2023-06-22T06:44:00,998 creating build/lib/alto/commands 2023-06-22T06:44:00,999 copying alto/commands/upload.py -> build/lib/alto/commands 2023-06-22T06:44:01,001 copying alto/commands/parse_monitoring_log.py -> build/lib/alto/commands 2023-06-22T06:44:01,004 copying alto/commands/__init__.py -> build/lib/alto/commands 2023-06-22T06:44:01,006 creating build/lib/alto/commands/cromwell 2023-06-22T06:44:01,007 copying alto/commands/cromwell/list_jobs.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,009 copying alto/commands/cromwell/get_metadata.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,011 copying alto/commands/cromwell/get_task_status.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,013 copying alto/commands/cromwell/abort.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,015 copying alto/commands/cromwell/get_logs.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,017 copying alto/commands/cromwell/run.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,019 copying alto/commands/cromwell/__init__.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,021 copying alto/commands/cromwell/timing.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,023 copying alto/commands/cromwell/check_status.py -> build/lib/alto/commands/cromwell 2023-06-22T06:44:01,025 creating build/lib/alto/commands/terra 2023-06-22T06:44:01,026 copying alto/commands/terra/remove_method.py -> build/lib/alto/commands/terra 2023-06-22T06:44:01,028 copying alto/commands/terra/run.py -> build/lib/alto/commands/terra 2023-06-22T06:44:01,030 copying alto/commands/terra/__init__.py -> build/lib/alto/commands/terra 2023-06-22T06:44:01,032 copying alto/commands/terra/add_method.py -> build/lib/alto/commands/terra 2023-06-22T06:44:01,034 copying alto/commands/terra/storage_estimate.py -> build/lib/alto/commands/terra 2023-06-22T06:44:01,036 running egg_info 2023-06-22T06:44:01,047 writing altocumulus.egg-info/PKG-INFO 2023-06-22T06:44:01,049 writing dependency_links to altocumulus.egg-info/dependency_links.txt 2023-06-22T06:44:01,051 writing entry points to altocumulus.egg-info/entry_points.txt 2023-06-22T06:44:01,052 writing requirements to altocumulus.egg-info/requires.txt 2023-06-22T06:44:01,053 writing top-level names to altocumulus.egg-info/top_level.txt 2023-06-22T06:44:01,084 listing git files failed - pretending there aren't any 2023-06-22T06:44:01,092 reading manifest file 'altocumulus.egg-info/SOURCES.txt' 2023-06-22T06:44:01,096 reading manifest template 'MANIFEST.in' 2023-06-22T06:44:01,103 no previously-included directories found matching 'alto/tests' 2023-06-22T06:44:01,103 adding license file 'LICENSE' 2023-06-22T06:44:01,109 writing manifest file 'altocumulus.egg-info/SOURCES.txt' 2023-06-22T06:44:01,112 /tmp/pip-build-env-e71p1uvh/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'alto.__pycache__' is absent from the `packages` configuration. 2023-06-22T06:44:01,112 !! 2023-06-22T06:44:01,113 ******************************************************************************** 2023-06-22T06:44:01,113 ############################ 2023-06-22T06:44:01,113 # Package would be ignored # 2023-06-22T06:44:01,113 ############################ 2023-06-22T06:44:01,113 Python recognizes 'alto.__pycache__' as an importable package[^1], 2023-06-22T06:44:01,113 but it is absent from setuptools' `packages` configuration. 2023-06-22T06:44:01,114 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T06:44:01,114 package, please make sure that 'alto.__pycache__' is explicitly added 2023-06-22T06:44:01,114 to the `packages` configuration field. 2023-06-22T06:44:01,114 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T06:44:01,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T06:44:01,114 instead of `find_packages(...)`/`find:`). 2023-06-22T06:44:01,115 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T06:44:01,115 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T06:44:01,115 If you don't want 'alto.__pycache__' to be distributed and are 2023-06-22T06:44:01,115 already explicitly excluding 'alto.__pycache__' via 2023-06-22T06:44:01,115 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T06:44:01,115 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T06:44:01,115 combination with a more fine grained `package-data` configuration. 2023-06-22T06:44:01,116 You can read more about "package data files" on setuptools documentation page: 2023-06-22T06:44:01,116 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T06:44:01,116 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T06:44:01,116 even if it does not contain any `.py` files. 2023-06-22T06:44:01,117 On the other hand, currently there is no concept of package data 2023-06-22T06:44:01,117 directory, all directories are treated like packages. 2023-06-22T06:44:01,117 ******************************************************************************** 2023-06-22T06:44:01,117 !! 2023-06-22T06:44:01,117 check.warn(importable) 2023-06-22T06:44:01,117 /tmp/pip-build-env-e71p1uvh/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'alto.commands.__pycache__' is absent from the `packages` configuration. 2023-06-22T06:44:01,117 !! 2023-06-22T06:44:01,118 ******************************************************************************** 2023-06-22T06:44:01,118 ############################ 2023-06-22T06:44:01,118 # Package would be ignored # 2023-06-22T06:44:01,118 ############################ 2023-06-22T06:44:01,118 Python recognizes 'alto.commands.__pycache__' as an importable package[^1], 2023-06-22T06:44:01,118 but it is absent from setuptools' `packages` configuration. 2023-06-22T06:44:01,118 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T06:44:01,119 package, please make sure that 'alto.commands.__pycache__' is explicitly added 2023-06-22T06:44:01,119 to the `packages` configuration field. 2023-06-22T06:44:01,119 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T06:44:01,119 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T06:44:01,119 instead of `find_packages(...)`/`find:`). 2023-06-22T06:44:01,119 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T06:44:01,120 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T06:44:01,120 If you don't want 'alto.commands.__pycache__' to be distributed and are 2023-06-22T06:44:01,120 already explicitly excluding 'alto.commands.__pycache__' via 2023-06-22T06:44:01,120 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T06:44:01,120 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T06:44:01,120 combination with a more fine grained `package-data` configuration. 2023-06-22T06:44:01,120 You can read more about "package data files" on setuptools documentation page: 2023-06-22T06:44:01,121 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T06:44:01,121 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T06:44:01,121 even if it does not contain any `.py` files. 2023-06-22T06:44:01,121 On the other hand, currently there is no concept of package data 2023-06-22T06:44:01,121 directory, all directories are treated like packages. 2023-06-22T06:44:01,122 ******************************************************************************** 2023-06-22T06:44:01,122 !! 2023-06-22T06:44:01,122 check.warn(importable) 2023-06-22T06:44:01,122 /tmp/pip-build-env-e71p1uvh/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'alto.commands.cromwell.__pycache__' is absent from the `packages` configuration. 2023-06-22T06:44:01,122 !! 2023-06-22T06:44:01,122 ******************************************************************************** 2023-06-22T06:44:01,123 ############################ 2023-06-22T06:44:01,123 # Package would be ignored # 2023-06-22T06:44:01,123 ############################ 2023-06-22T06:44:01,123 Python recognizes 'alto.commands.cromwell.__pycache__' as an importable package[^1], 2023-06-22T06:44:01,123 but it is absent from setuptools' `packages` configuration. 2023-06-22T06:44:01,123 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T06:44:01,123 package, please make sure that 'alto.commands.cromwell.__pycache__' is explicitly added 2023-06-22T06:44:01,124 to the `packages` configuration field. 2023-06-22T06:44:01,124 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T06:44:01,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T06:44:01,124 instead of `find_packages(...)`/`find:`). 2023-06-22T06:44:01,124 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T06:44:01,125 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T06:44:01,125 If you don't want 'alto.commands.cromwell.__pycache__' to be distributed and are 2023-06-22T06:44:01,125 already explicitly excluding 'alto.commands.cromwell.__pycache__' via 2023-06-22T06:44:01,125 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T06:44:01,125 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T06:44:01,125 combination with a more fine grained `package-data` configuration. 2023-06-22T06:44:01,126 You can read more about "package data files" on setuptools documentation page: 2023-06-22T06:44:01,126 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T06:44:01,126 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T06:44:01,126 even if it does not contain any `.py` files. 2023-06-22T06:44:01,126 On the other hand, currently there is no concept of package data 2023-06-22T06:44:01,127 directory, all directories are treated like packages. 2023-06-22T06:44:01,127 ******************************************************************************** 2023-06-22T06:44:01,127 !! 2023-06-22T06:44:01,127 check.warn(importable) 2023-06-22T06:44:01,127 /tmp/pip-build-env-e71p1uvh/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'alto.commands.terra.__pycache__' is absent from the `packages` configuration. 2023-06-22T06:44:01,127 !! 2023-06-22T06:44:01,128 ******************************************************************************** 2023-06-22T06:44:01,128 ############################ 2023-06-22T06:44:01,128 # Package would be ignored # 2023-06-22T06:44:01,128 ############################ 2023-06-22T06:44:01,128 Python recognizes 'alto.commands.terra.__pycache__' as an importable package[^1], 2023-06-22T06:44:01,128 but it is absent from setuptools' `packages` configuration. 2023-06-22T06:44:01,128 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T06:44:01,129 package, please make sure that 'alto.commands.terra.__pycache__' is explicitly added 2023-06-22T06:44:01,129 to the `packages` configuration field. 2023-06-22T06:44:01,129 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T06:44:01,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T06:44:01,129 instead of `find_packages(...)`/`find:`). 2023-06-22T06:44:01,129 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T06:44:01,130 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T06:44:01,130 If you don't want 'alto.commands.terra.__pycache__' to be distributed and are 2023-06-22T06:44:01,130 already explicitly excluding 'alto.commands.terra.__pycache__' via 2023-06-22T06:44:01,130 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T06:44:01,130 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T06:44:01,130 combination with a more fine grained `package-data` configuration. 2023-06-22T06:44:01,131 You can read more about "package data files" on setuptools documentation page: 2023-06-22T06:44:01,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T06:44:01,131 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T06:44:01,131 even if it does not contain any `.py` files. 2023-06-22T06:44:01,132 On the other hand, currently there is no concept of package data 2023-06-22T06:44:01,132 directory, all directories are treated like packages. 2023-06-22T06:44:01,132 ******************************************************************************** 2023-06-22T06:44:01,132 !! 2023-06-22T06:44:01,132 check.warn(importable) 2023-06-22T06:44:01,132 /tmp/pip-build-env-e71p1uvh/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'alto.utils.__pycache__' is absent from the `packages` configuration. 2023-06-22T06:44:01,132 !! 2023-06-22T06:44:01,133 ******************************************************************************** 2023-06-22T06:44:01,133 ############################ 2023-06-22T06:44:01,133 # Package would be ignored # 2023-06-22T06:44:01,133 ############################ 2023-06-22T06:44:01,133 Python recognizes 'alto.utils.__pycache__' as an importable package[^1], 2023-06-22T06:44:01,133 but it is absent from setuptools' `packages` configuration. 2023-06-22T06:44:01,134 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T06:44:01,134 package, please make sure that 'alto.utils.__pycache__' is explicitly added 2023-06-22T06:44:01,134 to the `packages` configuration field. 2023-06-22T06:44:01,134 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T06:44:01,134 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T06:44:01,134 instead of `find_packages(...)`/`find:`). 2023-06-22T06:44:01,135 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T06:44:01,135 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T06:44:01,135 If you don't want 'alto.utils.__pycache__' to be distributed and are 2023-06-22T06:44:01,135 already explicitly excluding 'alto.utils.__pycache__' via 2023-06-22T06:44:01,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T06:44:01,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T06:44:01,136 combination with a more fine grained `package-data` configuration. 2023-06-22T06:44:01,136 You can read more about "package data files" on setuptools documentation page: 2023-06-22T06:44:01,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T06:44:01,137 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T06:44:01,137 even if it does not contain any `.py` files. 2023-06-22T06:44:01,137 On the other hand, currently there is no concept of package data 2023-06-22T06:44:01,137 directory, all directories are treated like packages. 2023-06-22T06:44:01,137 ******************************************************************************** 2023-06-22T06:44:01,137 !! 2023-06-22T06:44:01,137 check.warn(importable) 2023-06-22T06:44:01,138 creating build/lib/alto/__pycache__ 2023-06-22T06:44:01,138 copying alto/__pycache__/__init__.cpython-39.pyc -> build/lib/alto/__pycache__ 2023-06-22T06:44:01,138 copying alto/__pycache__/__init__.pypy39.pyc -> build/lib/alto/__pycache__ 2023-06-22T06:44:01,138 copying alto/__pycache__/__main__.cpython-39.pyc -> build/lib/alto/__pycache__ 2023-06-22T06:44:01,138 copying alto/__pycache__/__main__.pypy39.pyc -> build/lib/alto/__pycache__ 2023-06-22T06:44:01,138 creating build/lib/alto/altocumulus.egg-info 2023-06-22T06:44:01,138 copying alto/altocumulus.egg-info/PKG-INFO -> build/lib/alto/altocumulus.egg-info 2023-06-22T06:44:01,138 copying alto/altocumulus.egg-info/SOURCES.txt -> build/lib/alto/altocumulus.egg-info 2023-06-22T06:44:01,139 copying alto/altocumulus.egg-info/dependency_links.txt -> build/lib/alto/altocumulus.egg-info 2023-06-22T06:44:01,140 copying alto/altocumulus.egg-info/entry_points.txt -> build/lib/alto/altocumulus.egg-info 2023-06-22T06:44:01,142 copying alto/altocumulus.egg-info/not-zip-safe -> build/lib/alto/altocumulus.egg-info 2023-06-22T06:44:01,144 copying alto/altocumulus.egg-info/requires.txt -> build/lib/alto/altocumulus.egg-info 2023-06-22T06:44:01,146 copying alto/altocumulus.egg-info/top_level.txt -> build/lib/alto/altocumulus.egg-info 2023-06-22T06:44:01,148 creating build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,149 copying alto/utils/__pycache__/__init__.cpython-39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,151 copying alto/utils/__pycache__/__init__.pypy39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,153 copying alto/utils/__pycache__/bcl_utils.cpython-39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,155 copying alto/utils/__pycache__/dockstore_utils.cpython-39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,157 copying alto/utils/__pycache__/dockstore_utils.pypy39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,160 copying alto/utils/__pycache__/fastq_utils.cpython-39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,162 copying alto/utils/__pycache__/firecloud_utils.cpython-39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,164 copying alto/utils/__pycache__/firecloud_utils.pypy39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,166 copying alto/utils/__pycache__/io_utils.cpython-39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,169 copying alto/utils/__pycache__/io_utils.pypy39.pyc -> build/lib/alto/utils/__pycache__ 2023-06-22T06:44:01,171 creating build/lib/alto/commands/__pycache__ 2023-06-22T06:44:01,172 copying alto/commands/__pycache__/__init__.cpython-39.pyc -> build/lib/alto/commands/__pycache__ 2023-06-22T06:44:01,174 copying alto/commands/__pycache__/__init__.pypy39.pyc -> build/lib/alto/commands/__pycache__ 2023-06-22T06:44:01,176 copying alto/commands/__pycache__/parse_monitoring_log.cpython-39.pyc -> build/lib/alto/commands/__pycache__ 2023-06-22T06:44:01,179 copying alto/commands/__pycache__/query.cpython-39.pyc -> build/lib/alto/commands/__pycache__ 2023-06-22T06:44:01,181 copying alto/commands/__pycache__/upload.cpython-39.pyc -> build/lib/alto/commands/__pycache__ 2023-06-22T06:44:01,183 creating build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,184 copying alto/commands/cromwell/__pycache__/__init__.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,186 copying alto/commands/cromwell/__pycache__/__init__.pypy39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,188 copying alto/commands/cromwell/__pycache__/abort.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,190 copying alto/commands/cromwell/__pycache__/abort.pypy39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,192 copying alto/commands/cromwell/__pycache__/check_status.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,194 copying alto/commands/cromwell/__pycache__/check_status.pypy39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,196 copying alto/commands/cromwell/__pycache__/get_logs.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,198 copying alto/commands/cromwell/__pycache__/get_logs.pypy39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,200 copying alto/commands/cromwell/__pycache__/get_metadata.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,202 copying alto/commands/cromwell/__pycache__/get_task_status.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,204 copying alto/commands/cromwell/__pycache__/list_jobs.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,207 copying alto/commands/cromwell/__pycache__/run.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,209 copying alto/commands/cromwell/__pycache__/timing.cpython-39.pyc -> build/lib/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,211 creating build/lib/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,212 copying alto/commands/terra/__pycache__/__init__.cpython-39.pyc -> build/lib/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,214 copying alto/commands/terra/__pycache__/add_method.cpython-39.pyc -> build/lib/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,216 copying alto/commands/terra/__pycache__/remove_method.cpython-39.pyc -> build/lib/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,218 copying alto/commands/terra/__pycache__/run.cpython-39.pyc -> build/lib/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,221 copying alto/commands/terra/__pycache__/storage_estimate.cpython-39.pyc -> build/lib/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,239 installing to build/bdist.linux-armv7l/wheel 2023-06-22T06:44:01,240 running install 2023-06-22T06:44:01,266 running install_lib 2023-06-22T06:44:01,273 creating build/bdist.linux-armv7l 2023-06-22T06:44:01,273 creating build/bdist.linux-armv7l/wheel 2023-06-22T06:44:01,275 creating build/bdist.linux-armv7l/wheel/alto 2023-06-22T06:44:01,276 creating build/bdist.linux-armv7l/wheel/alto/utils 2023-06-22T06:44:01,277 copying build/lib/alto/utils/dockstore_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2023-06-22T06:44:01,280 copying build/lib/alto/utils/bcl_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2023-06-22T06:44:01,283 creating build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,283 copying build/lib/alto/utils/__pycache__/io_utils.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,286 copying build/lib/alto/utils/__pycache__/bcl_utils.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,288 copying build/lib/alto/utils/__pycache__/fastq_utils.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,290 copying build/lib/alto/utils/__pycache__/firecloud_utils.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,292 copying build/lib/alto/utils/__pycache__/dockstore_utils.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,294 copying build/lib/alto/utils/__pycache__/dockstore_utils.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,296 copying build/lib/alto/utils/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,298 copying build/lib/alto/utils/__pycache__/firecloud_utils.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,300 copying build/lib/alto/utils/__pycache__/__init__.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,302 copying build/lib/alto/utils/__pycache__/io_utils.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/utils/__pycache__ 2023-06-22T06:44:01,304 copying build/lib/alto/utils/fastq_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2023-06-22T06:44:01,306 copying build/lib/alto/utils/firecloud_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2023-06-22T06:44:01,309 copying build/lib/alto/utils/__init__.py -> build/bdist.linux-armv7l/wheel/alto/utils 2023-06-22T06:44:01,311 copying build/lib/alto/utils/io_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2023-06-22T06:44:01,313 creating build/bdist.linux-armv7l/wheel/alto/__pycache__ 2023-06-22T06:44:01,314 copying build/lib/alto/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/__pycache__ 2023-06-22T06:44:01,316 copying build/lib/alto/__pycache__/__init__.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/__pycache__ 2023-06-22T06:44:01,318 copying build/lib/alto/__pycache__/__main__.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/__pycache__ 2023-06-22T06:44:01,319 copying build/lib/alto/__pycache__/__main__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/__pycache__ 2023-06-22T06:44:01,321 creating build/bdist.linux-armv7l/wheel/alto/altocumulus.egg-info 2023-06-22T06:44:01,322 copying build/lib/alto/altocumulus.egg-info/requires.txt -> build/bdist.linux-armv7l/wheel/alto/altocumulus.egg-info 2023-06-22T06:44:01,324 copying build/lib/alto/altocumulus.egg-info/PKG-INFO -> build/bdist.linux-armv7l/wheel/alto/altocumulus.egg-info 2023-06-22T06:44:01,326 copying build/lib/alto/altocumulus.egg-info/entry_points.txt -> build/bdist.linux-armv7l/wheel/alto/altocumulus.egg-info 2023-06-22T06:44:01,328 copying build/lib/alto/altocumulus.egg-info/not-zip-safe -> build/bdist.linux-armv7l/wheel/alto/altocumulus.egg-info 2023-06-22T06:44:01,330 copying build/lib/alto/altocumulus.egg-info/dependency_links.txt -> build/bdist.linux-armv7l/wheel/alto/altocumulus.egg-info 2023-06-22T06:44:01,331 copying build/lib/alto/altocumulus.egg-info/top_level.txt -> build/bdist.linux-armv7l/wheel/alto/altocumulus.egg-info 2023-06-22T06:44:01,333 copying build/lib/alto/altocumulus.egg-info/SOURCES.txt -> build/bdist.linux-armv7l/wheel/alto/altocumulus.egg-info 2023-06-22T06:44:01,335 copying build/lib/alto/__main__.py -> build/bdist.linux-armv7l/wheel/alto 2023-06-22T06:44:01,337 creating build/bdist.linux-armv7l/wheel/alto/commands 2023-06-22T06:44:01,338 creating build/bdist.linux-armv7l/wheel/alto/commands/__pycache__ 2023-06-22T06:44:01,339 copying build/lib/alto/commands/__pycache__/parse_monitoring_log.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/__pycache__ 2023-06-22T06:44:01,341 copying build/lib/alto/commands/__pycache__/upload.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/__pycache__ 2023-06-22T06:44:01,343 copying build/lib/alto/commands/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/__pycache__ 2023-06-22T06:44:01,345 copying build/lib/alto/commands/__pycache__/__init__.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/__pycache__ 2023-06-22T06:44:01,346 copying build/lib/alto/commands/__pycache__/query.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/__pycache__ 2023-06-22T06:44:01,348 copying build/lib/alto/commands/upload.py -> build/bdist.linux-armv7l/wheel/alto/commands 2023-06-22T06:44:01,350 creating build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,351 copying build/lib/alto/commands/cromwell/list_jobs.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,354 creating build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,355 copying build/lib/alto/commands/cromwell/__pycache__/get_task_status.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,357 copying build/lib/alto/commands/cromwell/__pycache__/abort.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,358 copying build/lib/alto/commands/cromwell/__pycache__/timing.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,360 copying build/lib/alto/commands/cromwell/__pycache__/get_logs.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,362 copying build/lib/alto/commands/cromwell/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,363 copying build/lib/alto/commands/cromwell/__pycache__/check_status.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,365 copying build/lib/alto/commands/cromwell/__pycache__/get_logs.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,367 copying build/lib/alto/commands/cromwell/__pycache__/get_metadata.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,369 copying build/lib/alto/commands/cromwell/__pycache__/check_status.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,370 copying build/lib/alto/commands/cromwell/__pycache__/__init__.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,372 copying build/lib/alto/commands/cromwell/__pycache__/abort.pypy39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,373 copying build/lib/alto/commands/cromwell/__pycache__/run.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,376 copying build/lib/alto/commands/cromwell/__pycache__/list_jobs.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell/__pycache__ 2023-06-22T06:44:01,378 copying build/lib/alto/commands/cromwell/get_metadata.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,380 copying build/lib/alto/commands/cromwell/get_task_status.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,382 copying build/lib/alto/commands/cromwell/abort.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,383 copying build/lib/alto/commands/cromwell/get_logs.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,385 copying build/lib/alto/commands/cromwell/run.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,388 copying build/lib/alto/commands/cromwell/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,389 copying build/lib/alto/commands/cromwell/timing.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,391 copying build/lib/alto/commands/cromwell/check_status.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2023-06-22T06:44:01,393 copying build/lib/alto/commands/parse_monitoring_log.py -> build/bdist.linux-armv7l/wheel/alto/commands 2023-06-22T06:44:01,395 copying build/lib/alto/commands/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands 2023-06-22T06:44:01,397 creating build/bdist.linux-armv7l/wheel/alto/commands/terra 2023-06-22T06:44:01,399 creating build/bdist.linux-armv7l/wheel/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,400 copying build/lib/alto/commands/terra/__pycache__/storage_estimate.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,401 copying build/lib/alto/commands/terra/__pycache__/add_method.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,403 copying build/lib/alto/commands/terra/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,405 copying build/lib/alto/commands/terra/__pycache__/remove_method.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,407 copying build/lib/alto/commands/terra/__pycache__/run.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/alto/commands/terra/__pycache__ 2023-06-22T06:44:01,409 copying build/lib/alto/commands/terra/remove_method.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2023-06-22T06:44:01,411 copying build/lib/alto/commands/terra/run.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2023-06-22T06:44:01,413 copying build/lib/alto/commands/terra/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2023-06-22T06:44:01,415 copying build/lib/alto/commands/terra/add_method.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2023-06-22T06:44:01,417 copying build/lib/alto/commands/terra/storage_estimate.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2023-06-22T06:44:01,418 copying build/lib/alto/__init__.py -> build/bdist.linux-armv7l/wheel/alto 2023-06-22T06:44:01,420 running install_egg_info 2023-06-22T06:44:01,426 Copying altocumulus.egg-info to build/bdist.linux-armv7l/wheel/altocumulus-2.3.0-py3.9.egg-info 2023-06-22T06:44:01,439 running install_scripts 2023-06-22T06:44:01,458 creating build/bdist.linux-armv7l/wheel/altocumulus-2.3.0.dist-info/WHEEL 2023-06-22T06:44:01,460 creating '/tmp/pip-wheel-w1zry8oe/.tmp-9qupii2c/altocumulus-2.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-22T06:44:01,462 adding 'alto/__init__.py' 2023-06-22T06:44:01,464 adding 'alto/__main__.py' 2023-06-22T06:44:01,466 adding 'alto/__pycache__/__init__.cpython-39.pyc' 2023-06-22T06:44:01,467 adding 'alto/__pycache__/__init__.pypy39.pyc' 2023-06-22T06:44:01,468 adding 'alto/__pycache__/__main__.cpython-39.pyc' 2023-06-22T06:44:01,469 adding 'alto/__pycache__/__main__.pypy39.pyc' 2023-06-22T06:44:01,471 adding 'alto/altocumulus.egg-info/PKG-INFO' 2023-06-22T06:44:01,472 adding 'alto/altocumulus.egg-info/SOURCES.txt' 2023-06-22T06:44:01,474 adding 'alto/altocumulus.egg-info/dependency_links.txt' 2023-06-22T06:44:01,475 adding 'alto/altocumulus.egg-info/entry_points.txt' 2023-06-22T06:44:01,476 adding 'alto/altocumulus.egg-info/not-zip-safe' 2023-06-22T06:44:01,477 adding 'alto/altocumulus.egg-info/requires.txt' 2023-06-22T06:44:01,478 adding 'alto/altocumulus.egg-info/top_level.txt' 2023-06-22T06:44:01,479 adding 'alto/commands/__init__.py' 2023-06-22T06:44:01,481 adding 'alto/commands/parse_monitoring_log.py' 2023-06-22T06:44:01,482 adding 'alto/commands/upload.py' 2023-06-22T06:44:01,484 adding 'alto/commands/__pycache__/__init__.cpython-39.pyc' 2023-06-22T06:44:01,485 adding 'alto/commands/__pycache__/__init__.pypy39.pyc' 2023-06-22T06:44:01,487 adding 'alto/commands/__pycache__/parse_monitoring_log.cpython-39.pyc' 2023-06-22T06:44:01,488 adding 'alto/commands/__pycache__/query.cpython-39.pyc' 2023-06-22T06:44:01,490 adding 'alto/commands/__pycache__/upload.cpython-39.pyc' 2023-06-22T06:44:01,492 adding 'alto/commands/cromwell/__init__.py' 2023-06-22T06:44:01,493 adding 'alto/commands/cromwell/abort.py' 2023-06-22T06:44:01,494 adding 'alto/commands/cromwell/check_status.py' 2023-06-22T06:44:01,495 adding 'alto/commands/cromwell/get_logs.py' 2023-06-22T06:44:01,497 adding 'alto/commands/cromwell/get_metadata.py' 2023-06-22T06:44:01,498 adding 'alto/commands/cromwell/get_task_status.py' 2023-06-22T06:44:01,499 adding 'alto/commands/cromwell/list_jobs.py' 2023-06-22T06:44:01,501 adding 'alto/commands/cromwell/run.py' 2023-06-22T06:44:01,503 adding 'alto/commands/cromwell/timing.py' 2023-06-22T06:44:01,505 adding 'alto/commands/cromwell/__pycache__/__init__.cpython-39.pyc' 2023-06-22T06:44:01,506 adding 'alto/commands/cromwell/__pycache__/__init__.pypy39.pyc' 2023-06-22T06:44:01,507 adding 'alto/commands/cromwell/__pycache__/abort.cpython-39.pyc' 2023-06-22T06:44:01,508 adding 'alto/commands/cromwell/__pycache__/abort.pypy39.pyc' 2023-06-22T06:44:01,510 adding 'alto/commands/cromwell/__pycache__/check_status.cpython-39.pyc' 2023-06-22T06:44:01,511 adding 'alto/commands/cromwell/__pycache__/check_status.pypy39.pyc' 2023-06-22T06:44:01,512 adding 'alto/commands/cromwell/__pycache__/get_logs.cpython-39.pyc' 2023-06-22T06:44:01,514 adding 'alto/commands/cromwell/__pycache__/get_logs.pypy39.pyc' 2023-06-22T06:44:01,515 adding 'alto/commands/cromwell/__pycache__/get_metadata.cpython-39.pyc' 2023-06-22T06:44:01,517 adding 'alto/commands/cromwell/__pycache__/get_task_status.cpython-39.pyc' 2023-06-22T06:44:01,518 adding 'alto/commands/cromwell/__pycache__/list_jobs.cpython-39.pyc' 2023-06-22T06:44:01,520 adding 'alto/commands/cromwell/__pycache__/run.cpython-39.pyc' 2023-06-22T06:44:01,521 adding 'alto/commands/cromwell/__pycache__/timing.cpython-39.pyc' 2023-06-22T06:44:01,523 adding 'alto/commands/terra/__init__.py' 2023-06-22T06:44:01,525 adding 'alto/commands/terra/add_method.py' 2023-06-22T06:44:01,526 adding 'alto/commands/terra/remove_method.py' 2023-06-22T06:44:01,528 adding 'alto/commands/terra/run.py' 2023-06-22T06:44:01,529 adding 'alto/commands/terra/storage_estimate.py' 2023-06-22T06:44:01,531 adding 'alto/commands/terra/__pycache__/__init__.cpython-39.pyc' 2023-06-22T06:44:01,532 adding 'alto/commands/terra/__pycache__/add_method.cpython-39.pyc' 2023-06-22T06:44:01,534 adding 'alto/commands/terra/__pycache__/remove_method.cpython-39.pyc' 2023-06-22T06:44:01,535 adding 'alto/commands/terra/__pycache__/run.cpython-39.pyc' 2023-06-22T06:44:01,537 adding 'alto/commands/terra/__pycache__/storage_estimate.cpython-39.pyc' 2023-06-22T06:44:01,539 adding 'alto/utils/__init__.py' 2023-06-22T06:44:01,540 adding 'alto/utils/bcl_utils.py' 2023-06-22T06:44:01,542 adding 'alto/utils/dockstore_utils.py' 2023-06-22T06:44:01,543 adding 'alto/utils/fastq_utils.py' 2023-06-22T06:44:01,545 adding 'alto/utils/firecloud_utils.py' 2023-06-22T06:44:01,547 adding 'alto/utils/io_utils.py' 2023-06-22T06:44:01,549 adding 'alto/utils/__pycache__/__init__.cpython-39.pyc' 2023-06-22T06:44:01,550 adding 'alto/utils/__pycache__/__init__.pypy39.pyc' 2023-06-22T06:44:01,552 adding 'alto/utils/__pycache__/bcl_utils.cpython-39.pyc' 2023-06-22T06:44:01,553 adding 'alto/utils/__pycache__/dockstore_utils.cpython-39.pyc' 2023-06-22T06:44:01,555 adding 'alto/utils/__pycache__/dockstore_utils.pypy39.pyc' 2023-06-22T06:44:01,556 adding 'alto/utils/__pycache__/fastq_utils.cpython-39.pyc' 2023-06-22T06:44:01,558 adding 'alto/utils/__pycache__/firecloud_utils.cpython-39.pyc' 2023-06-22T06:44:01,560 adding 'alto/utils/__pycache__/firecloud_utils.pypy39.pyc' 2023-06-22T06:44:01,562 adding 'alto/utils/__pycache__/io_utils.cpython-39.pyc' 2023-06-22T06:44:01,564 adding 'alto/utils/__pycache__/io_utils.pypy39.pyc' 2023-06-22T06:44:01,566 adding 'altocumulus-2.3.0.dist-info/LICENSE' 2023-06-22T06:44:01,568 adding 'altocumulus-2.3.0.dist-info/METADATA' 2023-06-22T06:44:01,569 adding 'altocumulus-2.3.0.dist-info/WHEEL' 2023-06-22T06:44:01,570 adding 'altocumulus-2.3.0.dist-info/entry_points.txt' 2023-06-22T06:44:01,570 adding 'altocumulus-2.3.0.dist-info/top_level.txt' 2023-06-22T06:44:01,572 adding 'altocumulus-2.3.0.dist-info/RECORD' 2023-06-22T06:44:01,576 removing build/bdist.linux-armv7l/wheel 2023-06-22T06:44:01,707 Building wheel for altocumulus (pyproject.toml): finished with status 'done' 2023-06-22T06:44:01,714 Created wheel for altocumulus: filename=altocumulus-2.3.0-py3-none-any.whl size=104592 sha256=dacc013149e1f32f3b9347028a8eb3ff837d6e6a34d0eeabbc4c509079be8dc6 2023-06-22T06:44:01,715 Stored in directory: /tmp/pip-ephem-wheel-cache-_acpjxhr/wheels/0f/21/fa/c05d672171b1df7a94d2fed62e20d36d8bf36428748b20b79e 2023-06-22T06:44:01,728 Successfully built altocumulus 2023-06-22T06:44:01,734 Removed build tracker: '/tmp/pip-build-tracker-35y447dy'