2023-06-22T15:36:27,409 Created temporary directory: /tmp/pip-build-tracker-7tp5wk5m 2023-06-22T15:36:27,410 Initialized build tracking at /tmp/pip-build-tracker-7tp5wk5m 2023-06-22T15:36:27,410 Created build tracker: /tmp/pip-build-tracker-7tp5wk5m 2023-06-22T15:36:27,410 Entered build tracker: /tmp/pip-build-tracker-7tp5wk5m 2023-06-22T15:36:27,411 Created temporary directory: /tmp/pip-wheel-f05jq89t 2023-06-22T15:36:27,414 Created temporary directory: /tmp/pip-ephem-wheel-cache-1rpj6o0t 2023-06-22T15:36:27,440 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-22T15:36:27,443 2 location(s) to search for versions of pmx-biobb: 2023-06-22T15:36:27,443 * https://pypi.org/simple/pmx-biobb/ 2023-06-22T15:36:27,443 * https://www.piwheels.org/simple/pmx-biobb/ 2023-06-22T15:36:27,444 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/ 2023-06-22T15:36:27,444 Getting page https://pypi.org/simple/pmx-biobb/ 2023-06-22T15:36:27,446 Found index url https://pypi.org/simple/ 2023-06-22T15:36:27,500 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json 2023-06-22T15:36:27,504 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,505 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,505 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,506 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,506 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,506 Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,507 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,507 Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0 2023-06-22T15:36:27,507 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,508 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,508 Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1 2023-06-22T15:36:27,508 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,509 Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2 2023-06-22T15:36:27,509 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,510 Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3 2023-06-22T15:36:27,510 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,511 Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0 2023-06-22T15:36:27,511 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,512 Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1 2023-06-22T15:36:27,512 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,513 Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2 2023-06-22T15:36:27,513 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/ 2023-06-22T15:36:27,513 Getting page https://www.piwheels.org/simple/pmx-biobb/ 2023-06-22T15:36:27,514 Found index url https://www.piwheels.org/simple/ 2023-06-22T15:36:27,978 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html 2023-06-22T15:36:27,987 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,987 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,987 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,991 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,991 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,991 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,991 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,992 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,992 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,992 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,992 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-06-22T15:36:27,992 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,993 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,993 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,993 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-06-22T15:36:27,993 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/ 2023-06-22T15:36:27,994 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/ 2023-06-22T15:36:28,022 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates 2023-06-22T15:36:28,049 Collecting pmx-biobb==4.0.2 2023-06-22T15:36:28,052 Created temporary directory: /tmp/pip-unpack-u8v2w34c 2023-06-22T15:36:28,137 Downloading pmx_biobb-4.0.2.tar.gz (3.8 MB) 2023-06-22T15:36:29,972 Added pmx-biobb==4.0.2 from https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-7tp5wk5m' 2023-06-22T15:36:29,974 Running setup.py (path:/tmp/pip-wheel-f05jq89t/pmx-biobb_820632ffa0a04d86bf1950c556c4e801/setup.py) egg_info for package pmx-biobb 2023-06-22T15:36:29,975 Created temporary directory: /tmp/pip-pip-egg-info-4xkkswnd 2023-06-22T15:36:29,975 Preparing metadata (setup.py): started 2023-06-22T15:36:29,976 Running command python setup.py egg_info 2023-06-22T15:36:30,634 running egg_info 2023-06-22T15:36:30,635 creating /tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info 2023-06-22T15:36:30,660 writing /tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info/PKG-INFO 2023-06-22T15:36:30,663 writing dependency_links to /tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info/dependency_links.txt 2023-06-22T15:36:30,664 writing entry points to /tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info/entry_points.txt 2023-06-22T15:36:30,666 writing requirements to /tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info/requires.txt 2023-06-22T15:36:30,667 writing top-level names to /tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info/top_level.txt 2023-06-22T15:36:30,668 writing manifest file '/tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info/SOURCES.txt' 2023-06-22T15:36:30,926 reading manifest file '/tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info/SOURCES.txt' 2023-06-22T15:36:30,928 reading manifest template 'MANIFEST.in' 2023-06-22T15:36:30,947 adding license file 'LICENSE' 2023-06-22T15:36:30,957 writing manifest file '/tmp/pip-pip-egg-info-4xkkswnd/pmx_biobb.egg-info/SOURCES.txt' 2023-06-22T15:36:31,029 Preparing metadata (setup.py): finished with status 'done' 2023-06-22T15:36:31,034 Source in /tmp/pip-wheel-f05jq89t/pmx-biobb_820632ffa0a04d86bf1950c556c4e801 has version 4.0.2, which satisfies requirement pmx-biobb==4.0.2 from https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz 2023-06-22T15:36:31,035 Removed pmx-biobb==4.0.2 from https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-7tp5wk5m' 2023-06-22T15:36:31,042 Created temporary directory: /tmp/pip-unpack-b5lfxqm9 2023-06-22T15:36:31,042 Building wheels for collected packages: pmx-biobb 2023-06-22T15:36:31,046 Created temporary directory: /tmp/pip-wheel-w7l_67fv 2023-06-22T15:36:31,047 Building wheel for pmx-biobb (setup.py): started 2023-06-22T15:36:31,048 Destination directory: /tmp/pip-wheel-w7l_67fv 2023-06-22T15:36:31,048 Running command python setup.py bdist_wheel 2023-06-22T15:36:31,704 running bdist_wheel 2023-06-22T15:36:31,976 running build 2023-06-22T15:36:31,976 running build_py 2023-06-22T15:36:31,980 creating build 2023-06-22T15:36:31,980 creating build/lib.linux-armv7l-cpython-39 2023-06-22T15:36:31,981 creating build/lib.linux-armv7l-cpython-39/pmx 2023-06-22T15:36:31,982 copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-06-22T15:36:31,984 running egg_info 2023-06-22T15:36:32,039 writing src/pmx_biobb.egg-info/PKG-INFO 2023-06-22T15:36:32,041 writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt 2023-06-22T15:36:32,043 writing entry points to src/pmx_biobb.egg-info/entry_points.txt 2023-06-22T15:36:32,044 writing requirements to src/pmx_biobb.egg-info/requires.txt 2023-06-22T15:36:32,046 writing top-level names to src/pmx_biobb.egg-info/top_level.txt 2023-06-22T15:36:32,073 reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-06-22T15:36:32,080 reading manifest template 'MANIFEST.in' 2023-06-22T15:36:32,094 adding license file 'LICENSE' 2023-06-22T15:36:32,107 writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-06-22T15:36:32,110 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data' is absent from the `packages` configuration. 2023-06-22T15:36:32,111 !! 2023-06-22T15:36:32,111 ******************************************************************************** 2023-06-22T15:36:32,112 ############################ 2023-06-22T15:36:32,112 # Package would be ignored # 2023-06-22T15:36:32,112 ############################ 2023-06-22T15:36:32,112 Python recognizes 'pmx.data' as an importable package[^1], 2023-06-22T15:36:32,112 but it is absent from setuptools' `packages` configuration. 2023-06-22T15:36:32,112 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T15:36:32,112 package, please make sure that 'pmx.data' is explicitly added 2023-06-22T15:36:32,113 to the `packages` configuration field. 2023-06-22T15:36:32,113 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T15:36:32,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T15:36:32,113 instead of `find_packages(...)`/`find:`). 2023-06-22T15:36:32,113 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T15:36:32,113 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T15:36:32,114 If you don't want 'pmx.data' to be distributed and are 2023-06-22T15:36:32,114 already explicitly excluding 'pmx.data' via 2023-06-22T15:36:32,114 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T15:36:32,114 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T15:36:32,114 combination with a more fine grained `package-data` configuration. 2023-06-22T15:36:32,114 You can read more about "package data files" on setuptools documentation page: 2023-06-22T15:36:32,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T15:36:32,115 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T15:36:32,115 even if it does not contain any `.py` files. 2023-06-22T15:36:32,115 On the other hand, currently there is no concept of package data 2023-06-22T15:36:32,115 directory, all directories are treated like packages. 2023-06-22T15:36:32,115 ******************************************************************************** 2023-06-22T15:36:32,116 !! 2023-06-22T15:36:32,116 check.warn(importable) 2023-06-22T15:36:32,116 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data.mutff45' is absent from the `packages` configuration. 2023-06-22T15:36:32,116 !! 2023-06-22T15:36:32,116 ******************************************************************************** 2023-06-22T15:36:32,116 ############################ 2023-06-22T15:36:32,116 # Package would be ignored # 2023-06-22T15:36:32,117 ############################ 2023-06-22T15:36:32,117 Python recognizes 'pmx.data.mutff45' as an importable package[^1], 2023-06-22T15:36:32,117 but it is absent from setuptools' `packages` configuration. 2023-06-22T15:36:32,117 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T15:36:32,117 package, please make sure that 'pmx.data.mutff45' is explicitly added 2023-06-22T15:36:32,117 to the `packages` configuration field. 2023-06-22T15:36:32,118 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T15:36:32,118 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T15:36:32,118 instead of `find_packages(...)`/`find:`). 2023-06-22T15:36:32,118 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T15:36:32,118 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T15:36:32,118 If you don't want 'pmx.data.mutff45' to be distributed and are 2023-06-22T15:36:32,119 already explicitly excluding 'pmx.data.mutff45' via 2023-06-22T15:36:32,119 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T15:36:32,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T15:36:32,119 combination with a more fine grained `package-data` configuration. 2023-06-22T15:36:32,119 You can read more about "package data files" on setuptools documentation page: 2023-06-22T15:36:32,119 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T15:36:32,120 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T15:36:32,120 even if it does not contain any `.py` files. 2023-06-22T15:36:32,120 On the other hand, currently there is no concept of package data 2023-06-22T15:36:32,120 directory, all directories are treated like packages. 2023-06-22T15:36:32,120 ******************************************************************************** 2023-06-22T15:36:32,120 !! 2023-06-22T15:36:32,120 check.warn(importable) 2023-06-22T15:36:32,121 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data.mutff45dna' is absent from the `packages` configuration. 2023-06-22T15:36:32,121 !! 2023-06-22T15:36:32,121 ******************************************************************************** 2023-06-22T15:36:32,121 ############################ 2023-06-22T15:36:32,121 # Package would be ignored # 2023-06-22T15:36:32,121 ############################ 2023-06-22T15:36:32,121 Python recognizes 'pmx.data.mutff45dna' as an importable package[^1], 2023-06-22T15:36:32,122 but it is absent from setuptools' `packages` configuration. 2023-06-22T15:36:32,122 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T15:36:32,122 package, please make sure that 'pmx.data.mutff45dna' is explicitly added 2023-06-22T15:36:32,122 to the `packages` configuration field. 2023-06-22T15:36:32,122 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T15:36:32,122 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T15:36:32,122 instead of `find_packages(...)`/`find:`). 2023-06-22T15:36:32,123 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T15:36:32,123 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T15:36:32,123 If you don't want 'pmx.data.mutff45dna' to be distributed and are 2023-06-22T15:36:32,123 already explicitly excluding 'pmx.data.mutff45dna' via 2023-06-22T15:36:32,123 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T15:36:32,123 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T15:36:32,124 combination with a more fine grained `package-data` configuration. 2023-06-22T15:36:32,124 You can read more about "package data files" on setuptools documentation page: 2023-06-22T15:36:32,124 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T15:36:32,124 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T15:36:32,124 even if it does not contain any `.py` files. 2023-06-22T15:36:32,125 On the other hand, currently there is no concept of package data 2023-06-22T15:36:32,125 directory, all directories are treated like packages. 2023-06-22T15:36:32,125 ******************************************************************************** 2023-06-22T15:36:32,125 !! 2023-06-22T15:36:32,125 check.warn(importable) 2023-06-22T15:36:32,128 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration. 2023-06-22T15:36:32,129 !! 2023-06-22T15:36:32,129 ******************************************************************************** 2023-06-22T15:36:32,129 ############################ 2023-06-22T15:36:32,129 # Package would be ignored # 2023-06-22T15:36:32,129 ############################ 2023-06-22T15:36:32,129 Python recognizes 'pmx.extensions.pmx' as an importable package[^1], 2023-06-22T15:36:32,129 but it is absent from setuptools' `packages` configuration. 2023-06-22T15:36:32,130 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T15:36:32,130 package, please make sure that 'pmx.extensions.pmx' is explicitly added 2023-06-22T15:36:32,130 to the `packages` configuration field. 2023-06-22T15:36:32,130 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T15:36:32,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T15:36:32,130 instead of `find_packages(...)`/`find:`). 2023-06-22T15:36:32,131 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T15:36:32,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T15:36:32,131 If you don't want 'pmx.extensions.pmx' to be distributed and are 2023-06-22T15:36:32,131 already explicitly excluding 'pmx.extensions.pmx' via 2023-06-22T15:36:32,131 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T15:36:32,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T15:36:32,132 combination with a more fine grained `package-data` configuration. 2023-06-22T15:36:32,132 You can read more about "package data files" on setuptools documentation page: 2023-06-22T15:36:32,132 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T15:36:32,132 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T15:36:32,132 even if it does not contain any `.py` files. 2023-06-22T15:36:32,133 On the other hand, currently there is no concept of package data 2023-06-22T15:36:32,133 directory, all directories are treated like packages. 2023-06-22T15:36:32,133 ******************************************************************************** 2023-06-22T15:36:32,133 !! 2023-06-22T15:36:32,133 check.warn(importable) 2023-06-22T15:36:32,133 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration. 2023-06-22T15:36:32,133 !! 2023-06-22T15:36:32,134 ******************************************************************************** 2023-06-22T15:36:32,134 ############################ 2023-06-22T15:36:32,134 # Package would be ignored # 2023-06-22T15:36:32,134 ############################ 2023-06-22T15:36:32,134 Python recognizes 'pmx.extensions.xdr' as an importable package[^1], 2023-06-22T15:36:32,134 but it is absent from setuptools' `packages` configuration. 2023-06-22T15:36:32,134 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T15:36:32,135 package, please make sure that 'pmx.extensions.xdr' is explicitly added 2023-06-22T15:36:32,135 to the `packages` configuration field. 2023-06-22T15:36:32,135 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T15:36:32,135 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T15:36:32,135 instead of `find_packages(...)`/`find:`). 2023-06-22T15:36:32,135 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T15:36:32,136 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T15:36:32,136 If you don't want 'pmx.extensions.xdr' to be distributed and are 2023-06-22T15:36:32,136 already explicitly excluding 'pmx.extensions.xdr' via 2023-06-22T15:36:32,136 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T15:36:32,136 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T15:36:32,136 combination with a more fine grained `package-data` configuration. 2023-06-22T15:36:32,136 You can read more about "package data files" on setuptools documentation page: 2023-06-22T15:36:32,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T15:36:32,137 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T15:36:32,137 even if it does not contain any `.py` files. 2023-06-22T15:36:32,137 On the other hand, currently there is no concept of package data 2023-06-22T15:36:32,137 directory, all directories are treated like packages. 2023-06-22T15:36:32,137 ******************************************************************************** 2023-06-22T15:36:32,138 !! 2023-06-22T15:36:32,138 check.warn(importable) 2023-06-22T15:36:32,138 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration. 2023-06-22T15:36:32,138 !! 2023-06-22T15:36:32,138 ******************************************************************************** 2023-06-22T15:36:32,138 ############################ 2023-06-22T15:36:32,138 # Package would be ignored # 2023-06-22T15:36:32,138 ############################ 2023-06-22T15:36:32,139 Python recognizes 'pmx.scripts' as an importable package[^1], 2023-06-22T15:36:32,139 but it is absent from setuptools' `packages` configuration. 2023-06-22T15:36:32,139 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T15:36:32,139 package, please make sure that 'pmx.scripts' is explicitly added 2023-06-22T15:36:32,139 to the `packages` configuration field. 2023-06-22T15:36:32,139 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T15:36:32,139 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T15:36:32,140 instead of `find_packages(...)`/`find:`). 2023-06-22T15:36:32,140 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T15:36:32,140 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T15:36:32,140 If you don't want 'pmx.scripts' to be distributed and are 2023-06-22T15:36:32,140 already explicitly excluding 'pmx.scripts' via 2023-06-22T15:36:32,140 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T15:36:32,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T15:36:32,141 combination with a more fine grained `package-data` configuration. 2023-06-22T15:36:32,141 You can read more about "package data files" on setuptools documentation page: 2023-06-22T15:36:32,141 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T15:36:32,141 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T15:36:32,142 even if it does not contain any `.py` files. 2023-06-22T15:36:32,142 On the other hand, currently there is no concept of package data 2023-06-22T15:36:32,142 directory, all directories are treated like packages. 2023-06-22T15:36:32,142 ******************************************************************************** 2023-06-22T15:36:32,142 !! 2023-06-22T15:36:32,142 check.warn(importable) 2023-06-22T15:36:32,142 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts.ligands' is absent from the `packages` configuration. 2023-06-22T15:36:32,142 !! 2023-06-22T15:36:32,143 ******************************************************************************** 2023-06-22T15:36:32,143 ############################ 2023-06-22T15:36:32,143 # Package would be ignored # 2023-06-22T15:36:32,143 ############################ 2023-06-22T15:36:32,143 Python recognizes 'pmx.scripts.ligands' as an importable package[^1], 2023-06-22T15:36:32,143 but it is absent from setuptools' `packages` configuration. 2023-06-22T15:36:32,143 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-22T15:36:32,144 package, please make sure that 'pmx.scripts.ligands' is explicitly added 2023-06-22T15:36:32,144 to the `packages` configuration field. 2023-06-22T15:36:32,144 Alternatively, you can also rely on setuptools' discovery methods 2023-06-22T15:36:32,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-22T15:36:32,144 instead of `find_packages(...)`/`find:`). 2023-06-22T15:36:32,144 You can read more about "package discovery" on setuptools documentation page: 2023-06-22T15:36:32,145 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-22T15:36:32,145 If you don't want 'pmx.scripts.ligands' to be distributed and are 2023-06-22T15:36:32,145 already explicitly excluding 'pmx.scripts.ligands' via 2023-06-22T15:36:32,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-22T15:36:32,145 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-22T15:36:32,145 combination with a more fine grained `package-data` configuration. 2023-06-22T15:36:32,145 You can read more about "package data files" on setuptools documentation page: 2023-06-22T15:36:32,146 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-22T15:36:32,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-22T15:36:32,146 even if it does not contain any `.py` files. 2023-06-22T15:36:32,146 On the other hand, currently there is no concept of package data 2023-06-22T15:36:32,146 directory, all directories are treated like packages. 2023-06-22T15:36:32,146 ******************************************************************************** 2023-06-22T15:36:32,147 !! 2023-06-22T15:36:32,147 check.warn(importable) 2023-06-22T15:36:32,147 creating build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-22T15:36:32,148 copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-22T15:36:32,388 copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-22T15:36:32,390 copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-22T15:36:32,395 copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-22T15:36:32,400 copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-22T15:36:32,406 copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-06-22T15:36:32,409 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-22T15:36:32,410 copying src/pmx/data/mutff45/atommass.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-22T15:36:32,412 copying src/pmx/data/mutff45/elements.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-22T15:36:32,415 copying src/pmx/data/mutff45/spc216.gro -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-22T15:36:32,418 copying src/pmx/data/mutff45/specbond.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-22T15:36:32,419 copying src/pmx/data/mutff45/xlateat.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45 2023-06-22T15:36:32,421 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,423 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,425 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,427 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,429 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,431 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,434 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,462 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,464 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,466 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,468 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,471 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,474 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,476 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,478 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,481 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,532 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,551 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,553 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,556 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,558 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,561 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,563 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,566 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,568 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,570 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,573 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,575 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,577 copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,580 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,581 copying src/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,583 copying src/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,586 copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,588 copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,591 copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,594 copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,597 copying src/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,599 copying src/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,601 copying src/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,604 copying src/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,607 copying src/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,609 copying src/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,612 copying src/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,614 copying src/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,617 copying src/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,620 copying src/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,623 copying src/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,625 copying src/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,627 copying src/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,630 copying src/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,632 copying src/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,635 copying src/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,637 copying src/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:32,639 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,641 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,643 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,646 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,648 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,650 copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,653 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,655 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,658 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,660 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,662 copying src/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,665 copying src/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,669 copying src/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,673 copying src/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,675 copying src/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,677 copying src/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,680 copying src/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,682 copying src/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,685 copying src/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,688 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,690 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,692 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,695 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,697 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,699 copying src/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,702 copying src/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,705 copying src/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,707 copying src/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,710 copying src/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,712 copying src/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,715 copying src/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,717 copying src/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:32,719 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm36mut.ff 2023-06-22T15:36:32,721 copying src/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm36mut.ff 2023-06-22T15:36:32,723 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna 2023-06-22T15:36:32,724 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,725 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,729 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,732 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,734 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,737 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,739 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,742 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,746 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,749 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,752 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,755 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,784 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,787 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,790 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,792 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,794 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,797 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,800 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,804 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,806 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,808 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,811 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,813 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,855 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,875 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,884 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,888 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,891 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,895 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,897 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,899 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,902 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,905 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,908 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,910 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,913 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,915 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,918 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,920 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,923 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:32,925 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,927 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,929 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,931 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,934 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,937 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,939 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,944 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,947 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,950 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,953 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,956 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,959 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,961 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,964 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,967 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,970 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,973 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,975 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,978 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,980 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,988 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,993 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,996 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:32,999 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,001 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,004 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,007 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,010 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,012 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,015 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,017 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,020 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,022 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,024 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,027 copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:33,029 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,030 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,035 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,038 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,040 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,042 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,045 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,048 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,050 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,053 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,055 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,082 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,085 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,094 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,098 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,100 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,102 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,104 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,106 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,108 copying src/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:33,110 creating build/lib.linux-armv7l-cpython-39/pmx/extensions 2023-06-22T15:36:33,110 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-22T15:36:33,111 copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-22T15:36:33,114 copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-22T15:36:33,117 copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-22T15:36:33,119 copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-22T15:36:33,121 copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-22T15:36:33,123 copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-22T15:36:33,126 copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-06-22T15:36:33,129 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,129 copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,132 copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,136 copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,139 copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,141 copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,144 copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,146 copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,148 copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-06-22T15:36:33,150 creating build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-06-22T15:36:33,151 copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-06-22T15:36:33,154 creating build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-22T15:36:33,155 copying src/pmx/scripts/ligands/atoms_to_morph.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-22T15:36:33,160 copying src/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-22T15:36:33,165 copying src/pmx/scripts/ligands/build_mst_graph.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-22T15:36:33,168 copying src/pmx/scripts/ligands/make_hybrid.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-22T15:36:33,173 copying src/pmx/scripts/ligands/one_ff_file.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands 2023-06-22T15:36:33,177 UPDATING build/lib.linux-armv7l-cpython-39/pmx/_version.py 2023-06-22T15:36:33,178 set build/lib.linux-armv7l-cpython-39/pmx/_version.py to '4.0.2' 2023-06-22T15:36:33,178 running build_ext 2023-06-22T15:36:33,186 building 'pmx._pmx' extension 2023-06-22T15:36:33,188 creating build/temp.linux-armv7l-cpython-39 2023-06-22T15:36:33,188 creating build/temp.linux-armv7l-cpython-39/src 2023-06-22T15:36:33,189 creating build/temp.linux-armv7l-cpython-39/src/pmx 2023-06-22T15:36:33,190 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions 2023-06-22T15:36:33,191 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx 2023-06-22T15:36:33,192 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o 2023-06-22T15:36:34,158 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o 2023-06-22T15:36:34,470 src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’: 2023-06-22T15:36:34,470 src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-06-22T15:36:34,470 527 | int nx, ny, nz; 2023-06-22T15:36:34,471 | ^~ 2023-06-22T15:36:34,471 src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’: 2023-06-22T15:36:34,471 src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-06-22T15:36:34,472 586 | int nx, ny, nz; 2023-06-22T15:36:34,472 | ^~ 2023-06-22T15:36:36,113 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o 2023-06-22T15:36:36,455 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o 2023-06-22T15:36:37,806 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so 2023-06-22T15:36:37,928 building 'pmx._xdrio' extension 2023-06-22T15:36:37,928 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr 2023-06-22T15:36:37,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.9 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr/xdrfile.o 2023-06-22T15:36:37,971 src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment] 2023-06-22T15:36:37,971 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-06-22T15:36:37,971 | 2023-06-22T15:36:38,044 In file included from src/pmx/extensions/xdr/xdrfile.c:60: 2023-06-22T15:36:38,044 src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-06-22T15:36:38,044 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-06-22T15:36:38,044 | 2023-06-22T15:36:38,050 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’: 2023-06-22T15:36:38,051 src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-22T15:36:38,051 499 | while (size >= num && num_of_bits < 32) 2023-06-22T15:36:38,051 | ^~ 2023-06-22T15:36:38,051 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’: 2023-06-22T15:36:38,051 src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-22T15:36:38,051 545 | while (bytes[num_of_bytes] >= num) 2023-06-22T15:36:38,052 | ^~ 2023-06-22T15:36:38,053 src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’: 2023-06-22T15:36:38,053 src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-22T15:36:38,053 654 | if (num_of_bits >= num_of_bytes * 8) 2023-06-22T15:36:38,053 | ^~ 2023-06-22T15:36:38,053 src/pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-22T15:36:38,053 656 | for (i = 0; i < num_of_bytes; i++) 2023-06-22T15:36:38,054 | ^ 2023-06-22T15:36:38,054 src/pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-22T15:36:38,054 664 | for (i = 0; i < num_of_bytes-1; i++) 2023-06-22T15:36:38,054 | ^ 2023-06-22T15:36:38,054 src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’: 2023-06-22T15:36:38,054 src/pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-22T15:36:38,055 704 | if (lastbits < num_of_bits) 2023-06-22T15:36:38,055 | ^ 2023-06-22T15:36:38,056 src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-06-22T15:36:38,057 src/pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-22T15:36:38,057 814 | if(size3>xfp->buf1size) 2023-06-22T15:36:38,057 | ^ 2023-06-22T15:36:38,058 src/pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-22T15:36:38,058 866 | maxidx = (LASTIDXxfp->buf1size) 2023-06-22T15:36:38,063 | ^ 2023-06-22T15:36:38,068 src/pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-22T15:36:38,068 1133 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-06-22T15:36:38,068 | ^ 2023-06-22T15:36:38,068 src/pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-22T15:36:38,068 1139 | maxidx = (LASTIDXxfp->buf1size) 2023-06-22T15:36:38,075 | ^ 2023-06-22T15:36:38,076 src/pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-22T15:36:38,077 1366 | maxidx = (LASTIDXxfp->buf1size) { 2023-06-22T15:36:38,083 | ^ 2023-06-22T15:36:38,089 src/pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-06-22T15:36:38,089 1617 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-06-22T15:36:38,089 | ^ 2023-06-22T15:36:38,090 src/pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-06-22T15:36:38,090 1622 | maxidx = (LASTIDX build/bdist.linux-armv7l/wheel/pmx 2023-06-22T15:36:41,258 creating build/bdist.linux-armv7l/wheel/pmx/data 2023-06-22T15:36:41,259 copying build/lib.linux-armv7l-cpython-39/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-22T15:36:41,265 copying build/lib.linux-armv7l-cpython-39/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-22T15:36:41,566 copying build/lib.linux-armv7l-cpython-39/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-22T15:36:41,568 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-22T15:36:41,573 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-22T15:36:41,573 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-22T15:36:41,576 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-22T15:36:41,579 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,580 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,582 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,583 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,585 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,587 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,588 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,612 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,614 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,616 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,618 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,620 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,623 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,625 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,627 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,629 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,631 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,704 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,706 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,725 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,728 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,730 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,731 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,733 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,736 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,737 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,739 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,740 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,742 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,744 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-22T15:36:41,746 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,747 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,749 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,750 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,752 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,755 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,757 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,758 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,759 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,761 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,763 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,765 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,766 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,769 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,770 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,772 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,774 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,776 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,778 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,779 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,783 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,784 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,786 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,788 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,789 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,791 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,793 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,795 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,796 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,798 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,799 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,801 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff 2023-06-22T15:36:41,803 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,804 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,806 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,807 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,809 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,811 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,813 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,815 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,816 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,818 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,820 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,822 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,825 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,826 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,828 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,830 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,832 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,833 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,835 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,837 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,839 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,840 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,842 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,844 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff 2023-06-22T15:36:41,845 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-22T15:36:41,847 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45 2023-06-22T15:36:41,849 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff 2023-06-22T15:36:41,850 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff 2023-06-22T15:36:41,852 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-22T15:36:41,856 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna 2023-06-22T15:36:41,858 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,859 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,861 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,864 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,866 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,868 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,870 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,872 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,874 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,876 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,877 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,880 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,882 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,884 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,886 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,888 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,890 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,892 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,893 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,895 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,897 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,899 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,901 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,903 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,905 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,907 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,914 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,915 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,919 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,921 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,923 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,925 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,927 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,928 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,930 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,933 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff 2023-06-22T15:36:41,935 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,936 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,939 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,941 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,943 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,944 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,946 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,947 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,949 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,951 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,952 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,954 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,956 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,957 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,964 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,966 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,968 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,994 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:41,998 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:42,000 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff 2023-06-22T15:36:42,003 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,004 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,006 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,010 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,012 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,013 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,016 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,018 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,020 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,021 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,047 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,049 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,052 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,054 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,056 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,059 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,061 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,064 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,066 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,068 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,070 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,071 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,125 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,127 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,129 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,131 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,152 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,155 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,158 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,159 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,161 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,167 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,169 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,174 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,175 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,178 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,180 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,181 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,183 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,185 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,188 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff 2023-06-22T15:36:42,190 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-06-22T15:36:42,196 copying build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-06-22T15:36:42,203 creating build/bdist.linux-armv7l/wheel/pmx/scripts 2023-06-22T15:36:42,204 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-06-22T15:36:42,207 creating build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-22T15:36:42,208 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-22T15:36:42,213 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/make_hybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-22T15:36:42,216 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/atoms_to_morph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-22T15:36:42,219 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/one_ff_file.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-22T15:36:42,221 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligands/build_mst_graph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands 2023-06-22T15:36:42,224 copying build/lib.linux-armv7l-cpython-39/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx 2023-06-22T15:36:42,226 creating build/bdist.linux-armv7l/wheel/pmx/extensions 2023-06-22T15:36:42,228 creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-22T15:36:42,229 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-22T15:36:42,232 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-22T15:36:42,233 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-22T15:36:42,236 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-22T15:36:42,238 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-22T15:36:42,240 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-22T15:36:42,243 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-06-22T15:36:42,246 creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,247 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,249 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,251 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,253 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,255 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,257 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,260 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,263 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-06-22T15:36:42,265 running install_egg_info 2023-06-22T15:36:42,295 Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-4.0.2-py3.9.egg-info 2023-06-22T15:36:42,309 running install_scripts 2023-06-22T15:36:42,362 creating build/bdist.linux-armv7l/wheel/pmx_biobb-4.0.2.dist-info/WHEEL 2023-06-22T15:36:42,364 creating '/tmp/pip-wheel-w7l_67fv/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-22T15:36:42,403 adding 'pmx/_pmx.cpython-39-arm-linux-gnueabihf.so' 2023-06-22T15:36:42,405 adding 'pmx/_version.py' 2023-06-22T15:36:42,431 adding 'pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so' 2023-06-22T15:36:44,253 adding 'pmx/data/bbdep.pkl' 2023-06-22T15:36:44,361 adding 'pmx/data/blosum62_new.mat' 2023-06-22T15:36:44,376 adding 'pmx/data/bp.pkl' 2023-06-22T15:36:44,396 adding 'pmx/data/bp_amber.pkl' 2023-06-22T15:36:44,417 adding 'pmx/data/bp_charmm.pkl' 2023-06-22T15:36:44,427 adding 'pmx/data/rna.pkl' 2023-06-22T15:36:44,429 adding 'pmx/data/mutff45/atommass.dat' 2023-06-22T15:36:44,431 adding 'pmx/data/mutff45/elements.dat' 2023-06-22T15:36:44,437 adding 'pmx/data/mutff45/spc216.gro' 2023-06-22T15:36:44,438 adding 'pmx/data/mutff45/specbond.dat' 2023-06-22T15:36:44,439 adding 'pmx/data/mutff45/xlateat.dat' 2023-06-22T15:36:44,442 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-06-22T15:36:44,443 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-06-22T15:36:44,445 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-06-22T15:36:44,446 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-06-22T15:36:44,447 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-06-22T15:36:44,509 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres' 2023-06-22T15:36:44,518 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn' 2023-06-22T15:36:44,519 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-06-22T15:36:44,520 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-06-22T15:36:44,523 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-06-22T15:36:44,527 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp' 2023-06-22T15:36:44,528 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-06-22T15:36:44,529 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-06-22T15:36:44,531 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp' 2023-06-22T15:36:44,687 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp' 2023-06-22T15:36:44,764 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp' 2023-06-22T15:36:44,773 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn' 2023-06-22T15:36:44,774 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-06-22T15:36:44,775 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-06-22T15:36:44,778 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-06-22T15:36:44,779 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp' 2023-06-22T15:36:44,780 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp' 2023-06-22T15:36:44,781 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-06-22T15:36:44,783 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-06-22T15:36:44,784 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-06-22T15:36:44,785 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-06-22T15:36:44,787 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp' 2023-06-22T15:36:44,788 adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-06-22T15:36:44,790 adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.am' 2023-06-22T15:36:44,792 adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.in' 2023-06-22T15:36:44,793 adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb' 2023-06-22T15:36:44,795 adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb' 2023-06-22T15:36:44,796 adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb' 2023-06-22T15:36:44,798 adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd' 2023-06-22T15:36:44,799 adding 'pmx/data/mutff45/amber99sbmut.ff/dna.arn' 2023-06-22T15:36:44,800 adding 'pmx/data/mutff45/amber99sbmut.ff/dna.hdb' 2023-06-22T15:36:44,801 adding 'pmx/data/mutff45/amber99sbmut.ff/dna.r2b' 2023-06-22T15:36:44,804 adding 'pmx/data/mutff45/amber99sbmut.ff/dna.rtp' 2023-06-22T15:36:44,805 adding 'pmx/data/mutff45/amber99sbmut.ff/gbsa.itp' 2023-06-22T15:36:44,807 adding 'pmx/data/mutff45/amber99sbmut.ff/rna.arn' 2023-06-22T15:36:44,808 adding 'pmx/data/mutff45/amber99sbmut.ff/rna.hdb' 2023-06-22T15:36:44,809 adding 'pmx/data/mutff45/amber99sbmut.ff/rna.r2b' 2023-06-22T15:36:44,812 adding 'pmx/data/mutff45/amber99sbmut.ff/rna.rtp' 2023-06-22T15:36:44,813 adding 'pmx/data/mutff45/amber99sbmut.ff/spc.itp' 2023-06-22T15:36:44,814 adding 'pmx/data/mutff45/amber99sbmut.ff/spce.itp' 2023-06-22T15:36:44,816 adding 'pmx/data/mutff45/amber99sbmut.ff/tip3p.itp' 2023-06-22T15:36:44,817 adding 'pmx/data/mutff45/amber99sbmut.ff/tip4p.itp' 2023-06-22T15:36:44,818 adding 'pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp' 2023-06-22T15:36:44,819 adding 'pmx/data/mutff45/amber99sbmut.ff/tip5p.itp' 2023-06-22T15:36:44,821 adding 'pmx/data/mutff45/amber99sbmut.ff/urea.itp' 2023-06-22T15:36:44,822 adding 'pmx/data/mutff45/amber99sbmut.ff/watermodels.dat' 2023-06-22T15:36:44,824 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn' 2023-06-22T15:36:44,825 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb' 2023-06-22T15:36:44,826 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb' 2023-06-22T15:36:44,828 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b' 2023-06-22T15:36:44,829 adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd' 2023-06-22T15:36:44,830 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.arn' 2023-06-22T15:36:44,831 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb' 2023-06-22T15:36:44,833 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.hdb' 2023-06-22T15:36:44,834 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb' 2023-06-22T15:36:44,835 adding 'pmx/data/mutff45/charmm22starmut.ff/dna.rtp' 2023-06-22T15:36:44,843 adding 'pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp' 2023-06-22T15:36:44,848 adding 'pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp' 2023-06-22T15:36:44,849 adding 'pmx/data/mutff45/charmm22starmut.ff/forcefield.itp' 2023-06-22T15:36:44,851 adding 'pmx/data/mutff45/charmm22starmut.ff/gb.itp' 2023-06-22T15:36:44,852 adding 'pmx/data/mutff45/charmm22starmut.ff/ions.itp' 2023-06-22T15:36:44,853 adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.hdb' 2023-06-22T15:36:44,857 adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.rtp' 2023-06-22T15:36:44,859 adding 'pmx/data/mutff45/charmm22starmut.ff/mutres.arn' 2023-06-22T15:36:44,860 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.arn' 2023-06-22T15:36:44,861 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb' 2023-06-22T15:36:44,862 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.hdb' 2023-06-22T15:36:44,863 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb' 2023-06-22T15:36:44,864 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.r2b' 2023-06-22T15:36:44,866 adding 'pmx/data/mutff45/charmm22starmut.ff/rna.rtp' 2023-06-22T15:36:44,867 adding 'pmx/data/mutff45/charmm22starmut.ff/spc.itp' 2023-06-22T15:36:44,869 adding 'pmx/data/mutff45/charmm22starmut.ff/spce.itp' 2023-06-22T15:36:44,870 adding 'pmx/data/mutff45/charmm22starmut.ff/tip3p.itp' 2023-06-22T15:36:44,871 adding 'pmx/data/mutff45/charmm22starmut.ff/tip4p.itp' 2023-06-22T15:36:44,872 adding 'pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp' 2023-06-22T15:36:44,874 adding 'pmx/data/mutff45/charmm22starmut.ff/tip5p.itp' 2023-06-22T15:36:44,875 adding 'pmx/data/mutff45/charmm22starmut.ff/watermodels.dat' 2023-06-22T15:36:44,877 adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.arn' 2023-06-22T15:36:44,881 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn' 2023-06-22T15:36:44,883 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup' 2023-06-22T15:36:44,884 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb' 2023-06-22T15:36:44,885 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb' 2023-06-22T15:36:44,886 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb' 2023-06-22T15:36:44,888 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b' 2023-06-22T15:36:44,896 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp' 2023-06-22T15:36:44,898 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd' 2023-06-22T15:36:44,900 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp' 2023-06-22T15:36:44,904 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-06-22T15:36:44,966 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres' 2023-06-22T15:36:44,977 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp' 2023-06-22T15:36:44,978 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn' 2023-06-22T15:36:44,979 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb' 2023-06-22T15:36:44,981 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b' 2023-06-22T15:36:44,983 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp' 2023-06-22T15:36:44,985 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp' 2023-06-22T15:36:44,990 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp' 2023-06-22T15:36:44,992 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp' 2023-06-22T15:36:44,993 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp' 2023-06-22T15:36:44,995 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp' 2023-06-22T15:36:44,996 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp' 2023-06-22T15:36:45,152 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp' 2023-06-22T15:36:45,230 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp' 2023-06-22T15:36:45,255 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp' 2023-06-22T15:36:45,265 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp' 2023-06-22T15:36:45,268 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp' 2023-06-22T15:36:45,270 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp' 2023-06-22T15:36:45,272 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn' 2023-06-22T15:36:45,273 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb' 2023-06-22T15:36:45,274 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b' 2023-06-22T15:36:45,277 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp' 2023-06-22T15:36:45,278 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp' 2023-06-22T15:36:45,279 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp' 2023-06-22T15:36:45,280 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp' 2023-06-22T15:36:45,282 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp' 2023-06-22T15:36:45,283 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp' 2023-06-22T15:36:45,284 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp' 2023-06-22T15:36:45,286 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp' 2023-06-22T15:36:45,287 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat' 2023-06-22T15:36:45,289 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn' 2023-06-22T15:36:45,290 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-06-22T15:36:45,292 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-06-22T15:36:45,293 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-06-22T15:36:45,294 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-06-22T15:36:45,302 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp' 2023-06-22T15:36:45,305 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-06-22T15:36:45,306 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp' 2023-06-22T15:36:45,310 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-06-22T15:36:45,314 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp' 2023-06-22T15:36:45,315 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn' 2023-06-22T15:36:45,317 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-06-22T15:36:45,318 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-06-22T15:36:45,320 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-06-22T15:36:45,322 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp' 2023-06-22T15:36:45,324 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp' 2023-06-22T15:36:45,325 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-06-22T15:36:45,327 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-06-22T15:36:45,328 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp' 2023-06-22T15:36:45,346 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp' 2023-06-22T15:36:45,355 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp' 2023-06-22T15:36:45,358 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp' 2023-06-22T15:36:45,361 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp' 2023-06-22T15:36:45,362 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn' 2023-06-22T15:36:45,363 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-06-22T15:36:45,364 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-06-22T15:36:45,367 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-06-22T15:36:45,368 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp' 2023-06-22T15:36:45,369 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp' 2023-06-22T15:36:45,371 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-06-22T15:36:45,372 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-06-22T15:36:45,373 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-06-22T15:36:45,375 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-06-22T15:36:45,376 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp' 2023-06-22T15:36:45,377 adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-06-22T15:36:45,390 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp' 2023-06-22T15:36:45,392 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp' 2023-06-22T15:36:45,393 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp' 2023-06-22T15:36:45,394 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp' 2023-06-22T15:36:45,396 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn' 2023-06-22T15:36:45,397 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb' 2023-06-22T15:36:45,398 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb' 2023-06-22T15:36:45,400 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb' 2023-06-22T15:36:45,401 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b' 2023-06-22T15:36:45,538 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp' 2023-06-22T15:36:45,546 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd' 2023-06-22T15:36:45,563 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp' 2023-06-22T15:36:45,572 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp' 2023-06-22T15:36:45,574 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp' 2023-06-22T15:36:45,576 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp' 2023-06-22T15:36:45,577 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp' 2023-06-22T15:36:45,578 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp' 2023-06-22T15:36:45,579 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp' 2023-06-22T15:36:45,580 adding 'pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat' 2023-06-22T15:36:45,583 adding 'pmx/extensions/pmx/Energy.c' 2023-06-22T15:36:45,586 adding 'pmx/extensions/pmx/Geometry.c' 2023-06-22T15:36:45,588 adding 'pmx/extensions/pmx/Geometry.h' 2023-06-22T15:36:45,590 adding 'pmx/extensions/pmx/cpp_test.cpp' 2023-06-22T15:36:45,591 adding 'pmx/extensions/pmx/init.c' 2023-06-22T15:36:45,593 adding 'pmx/extensions/pmx/pmx.h' 2023-06-22T15:36:45,595 adding 'pmx/extensions/pmx/wrap_Geometry.c' 2023-06-22T15:36:45,597 adding 'pmx/extensions/xdr/trr2xtc.c' 2023-06-22T15:36:45,604 adding 'pmx/extensions/xdr/xdrfile.c' 2023-06-22T15:36:45,607 adding 'pmx/extensions/xdr/xdrfile.h' 2023-06-22T15:36:45,609 adding 'pmx/extensions/xdr/xdrfile_c_test.c' 2023-06-22T15:36:45,611 adding 'pmx/extensions/xdr/xdrfile_trr.c' 2023-06-22T15:36:45,612 adding 'pmx/extensions/xdr/xdrfile_trr.h' 2023-06-22T15:36:45,614 adding 'pmx/extensions/xdr/xdrfile_xtc.c' 2023-06-22T15:36:45,615 adding 'pmx/extensions/xdr/xdrfile_xtc.h' 2023-06-22T15:36:45,618 adding 'pmx/scripts/md_setup.py' 2023-06-22T15:36:45,627 adding 'pmx/scripts/ligands/atoms_to_morph.py' 2023-06-22T15:36:45,638 adding 'pmx/scripts/ligands/atoms_to_morph_rdkit2018.py' 2023-06-22T15:36:45,641 adding 'pmx/scripts/ligands/build_mst_graph.py' 2023-06-22T15:36:45,646 adding 'pmx/scripts/ligands/make_hybrid.py' 2023-06-22T15:36:45,648 adding 'pmx/scripts/ligands/one_ff_file.py' 2023-06-22T15:36:45,650 adding 'pmx_biobb-4.0.2.dist-info/LICENSE' 2023-06-22T15:36:45,652 adding 'pmx_biobb-4.0.2.dist-info/METADATA' 2023-06-22T15:36:45,653 adding 'pmx_biobb-4.0.2.dist-info/WHEEL' 2023-06-22T15:36:45,654 adding 'pmx_biobb-4.0.2.dist-info/entry_points.txt' 2023-06-22T15:36:45,654 adding 'pmx_biobb-4.0.2.dist-info/top_level.txt' 2023-06-22T15:36:45,658 adding 'pmx_biobb-4.0.2.dist-info/RECORD' 2023-06-22T15:36:45,704 removing build/bdist.linux-armv7l/wheel 2023-06-22T15:36:45,855 Building wheel for pmx-biobb (setup.py): finished with status 'done' 2023-06-22T15:36:45,901 Created wheel for pmx-biobb: filename=pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl size=4257341 sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b 2023-06-22T15:36:45,902 Stored in directory: /tmp/pip-ephem-wheel-cache-1rpj6o0t/wheels/c0/79/bd/963e13c9387067ab234d8d399d363559b23fabe0903aacfc45 2023-06-22T15:36:45,921 Successfully built pmx-biobb 2023-06-22T15:36:46,047 Removed build tracker: '/tmp/pip-build-tracker-7tp5wk5m'