2023-06-23T22:29:38,443 Created temporary directory: /tmp/pip-build-tracker-kvx93z8t
2023-06-23T22:29:38,446 Initialized build tracking at /tmp/pip-build-tracker-kvx93z8t
2023-06-23T22:29:38,446 Created build tracker: /tmp/pip-build-tracker-kvx93z8t
2023-06-23T22:29:38,447 Entered build tracker: /tmp/pip-build-tracker-kvx93z8t
2023-06-23T22:29:38,448 Created temporary directory: /tmp/pip-wheel-646g83nj
2023-06-23T22:29:38,456 Created temporary directory: /tmp/pip-ephem-wheel-cache-y3fkao9p
2023-06-23T22:29:38,508 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-23T22:29:38,516 2 location(s) to search for versions of satmut-utils:
2023-06-23T22:29:38,516 * https://pypi.org/simple/satmut-utils/
2023-06-23T22:29:38,516 * https://www.piwheels.org/simple/satmut-utils/
2023-06-23T22:29:38,517 Fetching project page and analyzing links: https://pypi.org/simple/satmut-utils/
2023-06-23T22:29:38,518 Getting page https://pypi.org/simple/satmut-utils/
2023-06-23T22:29:38,523 Found index url https://pypi.org/simple/
2023-06-23T22:29:38,717 Fetched page https://pypi.org/simple/satmut-utils/ as application/vnd.pypi.simple.v1+json
2023-06-23T22:29:38,722   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/9d/7d/aa6a904965242a0c56c1ecc510cf3f4840936f6087b6f0203a9a718743c1/satmut_utils-1.0.0-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-23T22:29:38,724   Found link https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.0
2023-06-23T22:29:38,725   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/c1/c3/5c2d910cb9364b7f3a8ef7bea6aef6914c374cc1cfe7b7a217f4329fb167/satmut_utils-1.0.1-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-23T22:29:38,726   Found link https://files.pythonhosted.org/packages/3c/cb/1f7123f703b841687553195526b0253c632b3b13f17dbeefd1f24bfa7e9e/satmut_utils-1.0.1.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.1
2023-06-23T22:29:38,727   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/66/c0/576dbee34d884808eac267f6726c217d0bb366d6aa0d0d24fea1f1103def/satmut_utils-1.0.2-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-23T22:29:38,728   Found link https://files.pythonhosted.org/packages/4b/1b/2697ef2eb5e7fc90aaeb8fbe64d2c24069dbd0871f1fb6b23e5c7f66273f/satmut_utils-1.0.2.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.2
2023-06-23T22:29:38,729   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/85/2f/44449e247d8203168cd338bef490d92314d66b2dc0ea15ef3d03c6d7a9d1/satmut_utils-1.0.3-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-23T22:29:38,730   Found link https://files.pythonhosted.org/packages/33/f7/68da077554cf885a0fed028748c6e419bb97f64faa0a253ff4993fd08524/satmut_utils-1.0.3.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.3
2023-06-23T22:29:38,731 Fetching project page and analyzing links: https://www.piwheels.org/simple/satmut-utils/
2023-06-23T22:29:38,732 Getting page https://www.piwheels.org/simple/satmut-utils/
2023-06-23T22:29:38,734 Found index url https://www.piwheels.org/simple/
2023-06-23T22:29:38,973 Fetched page https://www.piwheels.org/simple/satmut-utils/ as text/html
2023-06-23T22:29:38,977   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.2-py3-none-any.whl#sha256=b3eaebca5f040ebf0c60f26e3b9ccef1935ce70852728f24b3a1623f4c791c20 (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-23T22:29:38,978   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.1-py3-none-any.whl#sha256=3f7c43b678b5e344409e2cb0718742684066d907768826a7d19b85b4c43adae6 (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-23T22:29:38,979   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.0-py3-none-any.whl#sha256=851816d46080d9e7a7ac2f235ea191e2a32f936dbd625d4caff953f6b4c1495c (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-23T22:29:38,979 Skipping link: not a file: https://www.piwheels.org/simple/satmut-utils/
2023-06-23T22:29:38,980 Skipping link: not a file: https://pypi.org/simple/satmut-utils/
2023-06-23T22:29:39,013 Given no hashes to check 1 links for project 'satmut-utils': discarding no candidates
2023-06-23T22:29:39,043 Collecting satmut-utils==1.0.3
2023-06-23T22:29:39,048   Created temporary directory: /tmp/pip-unpack-x1m41n5r
2023-06-23T22:29:39,250   Downloading satmut_utils-1.0.3.tar.gz (12.0 MB)
2023-06-23T22:29:43,940   Added satmut-utils==1.0.3 from https://files.pythonhosted.org/packages/33/f7/68da077554cf885a0fed028748c6e419bb97f64faa0a253ff4993fd08524/satmut_utils-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-kvx93z8t'
2023-06-23T22:29:43,949   Created temporary directory: /tmp/pip-build-env-x3fa53z7
2023-06-23T22:29:43,970   Installing build dependencies: started
2023-06-23T22:29:43,973   Running command pip subprocess to install build dependencies
2023-06-23T22:29:46,665   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-06-23T22:29:47,443   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-23T22:29:51,319   Collecting setuptools>=59
2023-06-23T22:29:51,507     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB)
2023-06-23T22:29:52,135   Collecting wheel
2023-06-23T22:29:52,173     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-06-23T22:29:57,186   Installing collected packages: wheel, setuptools
2023-06-23T22:29:57,636     Creating /tmp/pip-build-env-x3fa53z7/overlay/bin
2023-06-23T22:29:57,641     changing mode of /tmp/pip-build-env-x3fa53z7/overlay/bin/wheel to 755
2023-06-23T22:30:01,904   Successfully installed setuptools-68.0.0 wheel-0.40.0
2023-06-23T22:30:02,352   Installing build dependencies: finished with status 'done'
2023-06-23T22:30:02,363   Getting requirements to build wheel: started
2023-06-23T22:30:02,366   Running command Getting requirements to build wheel
2023-06-23T22:30:04,185   running egg_info
2023-06-23T22:30:04,203   writing src/satmut_utils.egg-info/PKG-INFO
2023-06-23T22:30:04,208   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2023-06-23T22:30:04,212   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2023-06-23T22:30:04,216   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2023-06-23T22:30:04,273   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-06-23T22:30:04,281   reading manifest template 'MANIFEST.in'
2023-06-23T22:30:04,289   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-06-23T22:30:04,290   adding license file 'LICENSE.txt'
2023-06-23T22:30:04,303   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-06-23T22:30:04,419   Getting requirements to build wheel: finished with status 'done'
2023-06-23T22:30:04,438   Created temporary directory: /tmp/pip-modern-metadata-44r6lod2
2023-06-23T22:30:04,445   Preparing metadata (pyproject.toml): started
2023-06-23T22:30:04,447   Running command Preparing metadata (pyproject.toml)
2023-06-23T22:30:05,809   running dist_info
2023-06-23T22:30:05,854   creating /tmp/pip-modern-metadata-44r6lod2/satmut_utils.egg-info
2023-06-23T22:30:05,864   writing /tmp/pip-modern-metadata-44r6lod2/satmut_utils.egg-info/PKG-INFO
2023-06-23T22:30:05,871   writing dependency_links to /tmp/pip-modern-metadata-44r6lod2/satmut_utils.egg-info/dependency_links.txt
2023-06-23T22:30:05,875   writing entry points to /tmp/pip-modern-metadata-44r6lod2/satmut_utils.egg-info/entry_points.txt
2023-06-23T22:30:05,879   writing top-level names to /tmp/pip-modern-metadata-44r6lod2/satmut_utils.egg-info/top_level.txt
2023-06-23T22:30:05,882   writing manifest file '/tmp/pip-modern-metadata-44r6lod2/satmut_utils.egg-info/SOURCES.txt'
2023-06-23T22:30:05,933   reading manifest file '/tmp/pip-modern-metadata-44r6lod2/satmut_utils.egg-info/SOURCES.txt'
2023-06-23T22:30:05,938   reading manifest template 'MANIFEST.in'
2023-06-23T22:30:05,946   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-06-23T22:30:05,946   adding license file 'LICENSE.txt'
2023-06-23T22:30:05,957   writing manifest file '/tmp/pip-modern-metadata-44r6lod2/satmut_utils.egg-info/SOURCES.txt'
2023-06-23T22:30:05,959   creating '/tmp/pip-modern-metadata-44r6lod2/satmut_utils-1.0.3.dist-info'
2023-06-23T22:30:06,277   Preparing metadata (pyproject.toml): finished with status 'done'
2023-06-23T22:30:06,293   Source in /tmp/pip-wheel-646g83nj/satmut-utils_960ff1e447184c25bce7d742f480c9fb has version 1.0.3, which satisfies requirement satmut-utils==1.0.3 from https://files.pythonhosted.org/packages/33/f7/68da077554cf885a0fed028748c6e419bb97f64faa0a253ff4993fd08524/satmut_utils-1.0.3.tar.gz
2023-06-23T22:30:06,295   Removed satmut-utils==1.0.3 from https://files.pythonhosted.org/packages/33/f7/68da077554cf885a0fed028748c6e419bb97f64faa0a253ff4993fd08524/satmut_utils-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-kvx93z8t'
2023-06-23T22:30:06,309 Created temporary directory: /tmp/pip-unpack-s4y10nj4
2023-06-23T22:30:06,310 Building wheels for collected packages: satmut-utils
2023-06-23T22:30:06,319   Created temporary directory: /tmp/pip-wheel-d02dtgnb
2023-06-23T22:30:06,319   Destination directory: /tmp/pip-wheel-d02dtgnb
2023-06-23T22:30:06,324   Building wheel for satmut-utils (pyproject.toml): started
2023-06-23T22:30:06,326   Running command Building wheel for satmut-utils (pyproject.toml)
2023-06-23T22:30:07,762   running bdist_wheel
2023-06-23T22:30:07,836   running build
2023-06-23T22:30:07,837   running build_py
2023-06-23T22:30:07,854   creating build
2023-06-23T22:30:07,855   creating build/lib
2023-06-23T22:30:07,856   creating build/lib/scripts
2023-06-23T22:30:07,858   copying src/scripts/__init__.py -> build/lib/scripts
2023-06-23T22:30:07,862   copying src/scripts/run_fastq_preprocessor.py -> build/lib/scripts
2023-06-23T22:30:07,866   copying src/scripts/run_bowtie2_aligner.py -> build/lib/scripts
2023-06-23T22:30:07,872   creating build/lib/analysis
2023-06-23T22:30:07,874   copying src/analysis/read_preprocessor.py -> build/lib/analysis
2023-06-23T22:30:07,884   copying src/analysis/coordinate_mapper.py -> build/lib/analysis
2023-06-23T22:30:07,888   copying src/analysis/aligners.py -> build/lib/analysis
2023-06-23T22:30:07,892   copying src/analysis/references.py -> build/lib/analysis
2023-06-23T22:30:07,897   copying src/analysis/__init__.py -> build/lib/analysis
2023-06-23T22:30:07,899   copying src/analysis/read_editor.py -> build/lib/analysis
2023-06-23T22:30:07,905   copying src/analysis/seq_utils.py -> build/lib/analysis
2023-06-23T22:30:07,910   copying src/analysis/variant_caller.py -> build/lib/analysis
2023-06-23T22:30:07,918   creating build/lib/core_utils
2023-06-23T22:30:07,920   copying src/core_utils/string_utils.py -> build/lib/core_utils
2023-06-23T22:30:07,924   copying src/core_utils/__init__.py -> build/lib/core_utils
2023-06-23T22:30:07,926   copying src/core_utils/feature_file_utils.py -> build/lib/core_utils
2023-06-23T22:30:07,930   copying src/core_utils/file_utils.py -> build/lib/core_utils
2023-06-23T22:30:07,934   copying src/core_utils/vcf_utils.py -> build/lib/core_utils
2023-06-23T22:30:07,940   creating build/lib/satmut_utils
2023-06-23T22:30:07,942   copying src/satmut_utils/satmut_utils.py -> build/lib/satmut_utils
2023-06-23T22:30:07,947   copying src/satmut_utils/__init__.py -> build/lib/satmut_utils
2023-06-23T22:30:07,950   copying src/satmut_utils/definitions.py -> build/lib/satmut_utils
2023-06-23T22:30:07,954   creating build/lib/tests
2023-06-23T22:30:07,956   copying src/tests/__init__.py -> build/lib/tests
2023-06-23T22:30:07,961   creating build/lib/tests/analysis
2023-06-23T22:30:07,963   copying src/tests/analysis/test_aligners.py -> build/lib/tests/analysis
2023-06-23T22:30:07,966   copying src/tests/analysis/test_read_preprocessor.py -> build/lib/tests/analysis
2023-06-23T22:30:07,973   copying src/tests/analysis/test_read_editor.py -> build/lib/tests/analysis
2023-06-23T22:30:07,979   copying src/tests/analysis/__init__.py -> build/lib/tests/analysis
2023-06-23T22:30:07,982   copying src/tests/analysis/test_coordinate_mapper.py -> build/lib/tests/analysis
2023-06-23T22:30:07,986   copying src/tests/analysis/test_variant_caller.py -> build/lib/tests/analysis
2023-06-23T22:30:07,992   copying src/tests/analysis/test_seq_utils.py -> build/lib/tests/analysis
2023-06-23T22:30:07,996   copying src/tests/analysis/test_references.py -> build/lib/tests/analysis
2023-06-23T22:30:08,002   creating build/lib/tests/core_utils
2023-06-23T22:30:08,004   copying src/tests/core_utils/test_file_utils.py -> build/lib/tests/core_utils
2023-06-23T22:30:08,007   copying src/tests/core_utils/__init__.py -> build/lib/tests/core_utils
2023-06-23T22:30:08,010   copying src/tests/core_utils/test_string_utils.py -> build/lib/tests/core_utils
2023-06-23T22:30:08,013   copying src/tests/core_utils/test_feature_file_utils.py -> build/lib/tests/core_utils
2023-06-23T22:30:08,019   creating build/lib/tests/test_data
2023-06-23T22:30:08,020   copying src/tests/test_data/__init__.py -> build/lib/tests/test_data
2023-06-23T22:30:08,023   running egg_info
2023-06-23T22:30:08,070   writing src/satmut_utils.egg-info/PKG-INFO
2023-06-23T22:30:08,074   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2023-06-23T22:30:08,078   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2023-06-23T22:30:08,081   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2023-06-23T22:30:08,108   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-06-23T22:30:08,116   reading manifest template 'MANIFEST.in'
2023-06-23T22:30:08,124   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-06-23T22:30:08,124   adding license file 'LICENSE.txt'
2023-06-23T22:30:08,138   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-06-23T22:30:08,152   copying src/tests/test_data/CBS.fa -> build/lib/tests/test_data
2023-06-23T22:30:08,157   copying src/tests/test_data/CBS.gff -> build/lib/tests/test_data
2023-06-23T22:30:08,162   copying src/tests/test_data/CBS_pEZY3.fa -> build/lib/tests/test_data
2023-06-23T22:30:08,167   copying src/tests/test_data/CBS_pEZY3.fa.1.bt2 -> build/lib/tests/test_data
2023-06-23T22:30:08,373   copying src/tests/test_data/CBS_pEZY3.fa.2.bt2 -> build/lib/tests/test_data
2023-06-23T22:30:08,378   copying src/tests/test_data/CBS_pEZY3.fa.3.bt2 -> build/lib/tests/test_data
2023-06-23T22:30:08,382   copying src/tests/test_data/CBS_pEZY3.fa.4.bt2 -> build/lib/tests/test_data
2023-06-23T22:30:08,387   copying src/tests/test_data/CBS_pEZY3.fa.fai -> build/lib/tests/test_data
2023-06-23T22:30:08,392   copying src/tests/test_data/CBS_pEZY3.fa.rev.1.bt2 -> build/lib/tests/test_data
2023-06-23T22:30:08,601   copying src/tests/test_data/CBS_pEZY3.fa.rev.2.bt2 -> build/lib/tests/test_data
2023-06-23T22:30:08,606   copying src/tests/test_data/CBS_pEZY3.gff -> build/lib/tests/test_data
2023-06-23T22:30:08,610   copying src/tests/test_data/CBS_pEZY3_primers.bed -> build/lib/tests/test_data
2023-06-23T22:30:08,614   copying src/tests/test_data/CBS_pEZY3_targets.bed -> build/lib/tests/test_data
2023-06-23T22:30:08,618   copying src/tests/test_data/CBS_sim.R1.fq.gz -> build/lib/tests/test_data
2023-06-23T22:30:08,622   copying src/tests/test_data/CBS_sim.R2.fq.gz -> build/lib/tests/test_data
2023-06-23T22:30:08,626   copying src/tests/test_data/CBS_sim.bam -> build/lib/tests/test_data
2023-06-23T22:30:08,630   copying src/tests/test_data/CBS_sim.bam.bai -> build/lib/tests/test_data
2023-06-23T22:30:08,634   copying src/tests/test_data/CBS_sim.vcf -> build/lib/tests/test_data
2023-06-23T22:30:08,638   copying src/tests/test_data/CBS_sim_primers.bed -> build/lib/tests/test_data
2023-06-23T22:30:08,642   copying src/tests/test_data/GRCh38.chr21.fa.gz -> build/lib/tests/test_data
2023-06-23T22:30:09,092   copying src/tests/test_data/PKNOX1.fa -> build/lib/tests/test_data
2023-06-23T22:30:09,097   copying src/tests/test_data/appris_human_24_01_2019_selected.fa -> build/lib/tests/test_data
2023-06-23T22:30:09,102   copying src/tests/test_data/appris_human_24_01_2019_selected.fa.fai -> build/lib/tests/test_data
2023-06-23T22:30:09,106   copying src/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/lib/tests/test_data
2023-06-23T22:30:09,110   copying src/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/lib/tests/test_data
2023-06-23T22:30:09,114   copying src/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/lib/tests/test_data
2023-06-23T22:30:09,118   copying src/tests/test_data/gencode.v29.annotation.gtf -> build/lib/tests/test_data
2023-06-23T22:30:09,124   copying src/tests/test_data/test_preprocess.bam -> build/lib/tests/test_data
2023-06-23T22:30:09,128   copying src/tests/test_data/test_preprocess.bam.bai -> build/lib/tests/test_data
2023-06-23T22:30:09,132   copying src/tests/test_data/test_preprocess.sam -> build/lib/tests/test_data
2023-06-23T22:30:09,137   copying src/tests/test_data/test_preprocess.sort.bam -> build/lib/tests/test_data
2023-06-23T22:30:09,141   copying src/tests/test_data/test_preprocess.sort.bam.bai -> build/lib/tests/test_data
2023-06-23T22:30:09,185   installing to build/bdist.linux-armv7l/wheel
2023-06-23T22:30:09,186   running install
2023-06-23T22:30:09,245   running install_lib
2023-06-23T22:30:09,260   creating build/bdist.linux-armv7l
2023-06-23T22:30:09,261   creating build/bdist.linux-armv7l/wheel
2023-06-23T22:30:09,265   creating build/bdist.linux-armv7l/wheel/scripts
2023-06-23T22:30:09,267   copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts
2023-06-23T22:30:09,271   copying build/lib/scripts/run_fastq_preprocessor.py -> build/bdist.linux-armv7l/wheel/scripts
2023-06-23T22:30:09,275   copying build/lib/scripts/run_bowtie2_aligner.py -> build/bdist.linux-armv7l/wheel/scripts
2023-06-23T22:30:09,281   creating build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,283   copying build/lib/analysis/read_preprocessor.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,293   copying build/lib/analysis/coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,299   copying build/lib/analysis/aligners.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,303   copying build/lib/analysis/references.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,307   copying build/lib/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,310   copying build/lib/analysis/read_editor.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,316   copying build/lib/analysis/seq_utils.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,321   copying build/lib/analysis/variant_caller.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-23T22:30:09,329   creating build/bdist.linux-armv7l/wheel/core_utils
2023-06-23T22:30:09,331   copying build/lib/core_utils/string_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-23T22:30:09,335   copying build/lib/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-23T22:30:09,338   copying build/lib/core_utils/feature_file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-23T22:30:09,343   copying build/lib/core_utils/file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-23T22:30:09,346   copying build/lib/core_utils/vcf_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-23T22:30:09,353   creating build/bdist.linux-armv7l/wheel/satmut_utils
2023-06-23T22:30:09,355   copying build/lib/satmut_utils/satmut_utils.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-06-23T22:30:09,360   copying build/lib/satmut_utils/__init__.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-06-23T22:30:09,363   copying build/lib/satmut_utils/definitions.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-06-23T22:30:09,368   creating build/bdist.linux-armv7l/wheel/tests
2023-06-23T22:30:09,370   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2023-06-23T22:30:09,374   creating build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,376   copying build/lib/tests/analysis/test_aligners.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,380   copying build/lib/tests/analysis/test_read_preprocessor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,387   copying build/lib/tests/analysis/test_read_editor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,393   copying build/lib/tests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,396   copying build/lib/tests/analysis/test_coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,400   copying build/lib/tests/analysis/test_variant_caller.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,406   copying build/lib/tests/analysis/test_seq_utils.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,411   copying build/lib/tests/analysis/test_references.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-23T22:30:09,416   creating build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-23T22:30:09,418   copying build/lib/tests/core_utils/test_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-23T22:30:09,422   copying build/lib/tests/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-23T22:30:09,425   copying build/lib/tests/core_utils/test_string_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-23T22:30:09,428   copying build/lib/tests/core_utils/test_feature_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-23T22:30:09,435   creating build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,436   copying build/lib/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,440   copying build/lib/tests/test_data/test_preprocess.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,444   copying build/lib/tests/test_data/CBS_pEZY3.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,447   copying build/lib/tests/test_data/CBS_pEZY3.fa.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,450   copying build/lib/tests/test_data/test_preprocess.sam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,455   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,612   copying build/lib/tests/test_data/CBS.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,615   copying build/lib/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,619   copying build/lib/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,621   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,625   copying build/lib/tests/test_data/CBS_pEZY3.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,628   copying build/lib/tests/test_data/PKNOX1.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,634   copying build/lib/tests/test_data/test_preprocess.sort.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,637   copying build/lib/tests/test_data/CBS.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,642   copying build/lib/tests/test_data/CBS_sim.vcf -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,646   copying build/lib/tests/test_data/CBS_sim.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,649   copying build/lib/tests/test_data/test_preprocess.sort.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:09,652   copying build/lib/tests/test_data/GRCh38.chr21.fa.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,179   copying build/lib/tests/test_data/CBS_sim_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,184   copying build/lib/tests/test_data/test_preprocess.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,187   copying build/lib/tests/test_data/CBS_pEZY3.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,191   copying build/lib/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,195   copying build/lib/tests/test_data/CBS_pEZY3.fa.3.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,198   copying build/lib/tests/test_data/CBS_sim.R2.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,202   copying build/lib/tests/test_data/CBS_pEZY3_targets.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,205   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,209   copying build/lib/tests/test_data/CBS_pEZY3.fa.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,358   copying build/lib/tests/test_data/CBS_sim.R1.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,362   copying build/lib/tests/test_data/CBS_sim.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,366   copying build/lib/tests/test_data/CBS_pEZY3.fa.4.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,370   copying build/lib/tests/test_data/gencode.v29.annotation.gtf -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,376   copying build/lib/tests/test_data/CBS_pEZY3_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,380   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-23T22:30:10,384   running install_egg_info
2023-06-23T22:30:10,408   Copying src/satmut_utils.egg-info to build/bdist.linux-armv7l/wheel/satmut_utils-1.0.3-py3.7.egg-info
2023-06-23T22:30:10,431   running install_scripts
2023-06-23T22:30:10,465   creating build/bdist.linux-armv7l/wheel/satmut_utils-1.0.3.dist-info/WHEEL
2023-06-23T22:30:10,471   creating '/tmp/pip-wheel-d02dtgnb/.tmp-3jsr40lo/satmut_utils-1.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-06-23T22:30:10,476   adding 'analysis/__init__.py'
2023-06-23T22:30:10,480   adding 'analysis/aligners.py'
2023-06-23T22:30:10,487   adding 'analysis/coordinate_mapper.py'
2023-06-23T22:30:10,500   adding 'analysis/read_editor.py'
2023-06-23T22:30:10,523   adding 'analysis/read_preprocessor.py'
2023-06-23T22:30:10,527   adding 'analysis/references.py'
2023-06-23T22:30:10,534   adding 'analysis/seq_utils.py'
2023-06-23T22:30:10,549   adding 'analysis/variant_caller.py'
2023-06-23T22:30:10,554   adding 'core_utils/__init__.py'
2023-06-23T22:30:10,558   adding 'core_utils/feature_file_utils.py'
2023-06-23T22:30:10,561   adding 'core_utils/file_utils.py'
2023-06-23T22:30:10,564   adding 'core_utils/string_utils.py'
2023-06-23T22:30:10,573   adding 'core_utils/vcf_utils.py'
2023-06-23T22:30:10,576   adding 'satmut_utils/__init__.py'
2023-06-23T22:30:10,579   adding 'satmut_utils/definitions.py'
2023-06-23T22:30:10,587   adding 'satmut_utils/satmut_utils.py'
2023-06-23T22:30:10,594   adding 'scripts/__init__.py'
2023-06-23T22:30:10,597   adding 'scripts/run_bowtie2_aligner.py'
2023-06-23T22:30:10,600   adding 'scripts/run_fastq_preprocessor.py'
2023-06-23T22:30:10,604   adding 'tests/__init__.py'
2023-06-23T22:30:10,608   adding 'tests/analysis/__init__.py'
2023-06-23T22:30:10,610   adding 'tests/analysis/test_aligners.py'
2023-06-23T22:30:10,614   adding 'tests/analysis/test_coordinate_mapper.py'
2023-06-23T22:30:10,622   adding 'tests/analysis/test_read_editor.py'
2023-06-23T22:30:10,636   adding 'tests/analysis/test_read_preprocessor.py'
2023-06-23T22:30:10,640   adding 'tests/analysis/test_references.py'
2023-06-23T22:30:10,645   adding 'tests/analysis/test_seq_utils.py'
2023-06-23T22:30:10,654   adding 'tests/analysis/test_variant_caller.py'
2023-06-23T22:30:10,659   adding 'tests/core_utils/__init__.py'
2023-06-23T22:30:10,662   adding 'tests/core_utils/test_feature_file_utils.py'
2023-06-23T22:30:10,665   adding 'tests/core_utils/test_file_utils.py'
2023-06-23T22:30:10,667   adding 'tests/core_utils/test_string_utils.py'
2023-06-23T22:30:10,673   adding 'tests/test_data/CBS.fa'
2023-06-23T22:30:10,677   adding 'tests/test_data/CBS.gff'
2023-06-23T22:30:10,684   adding 'tests/test_data/CBS_pEZY3.fa'
2023-06-23T22:30:10,922   adding 'tests/test_data/CBS_pEZY3.fa.1.bt2'
2023-06-23T22:30:11,009   adding 'tests/test_data/CBS_pEZY3.fa.2.bt2'
2023-06-23T22:30:11,012   adding 'tests/test_data/CBS_pEZY3.fa.3.bt2'
2023-06-23T22:30:11,014   adding 'tests/test_data/CBS_pEZY3.fa.4.bt2'
2023-06-23T22:30:11,017   adding 'tests/test_data/CBS_pEZY3.fa.fai'
2023-06-23T22:30:11,266   adding 'tests/test_data/CBS_pEZY3.fa.rev.1.bt2'
2023-06-23T22:30:11,353   adding 'tests/test_data/CBS_pEZY3.fa.rev.2.bt2'
2023-06-23T22:30:11,356   adding 'tests/test_data/CBS_pEZY3.gff'
2023-06-23T22:30:11,358   adding 'tests/test_data/CBS_pEZY3_primers.bed'
2023-06-23T22:30:11,361   adding 'tests/test_data/CBS_pEZY3_targets.bed'
2023-06-23T22:30:11,365   adding 'tests/test_data/CBS_sim.R1.fq.gz'
2023-06-23T22:30:11,368   adding 'tests/test_data/CBS_sim.R2.fq.gz'
2023-06-23T22:30:11,371   adding 'tests/test_data/CBS_sim.bam'
2023-06-23T22:30:11,374   adding 'tests/test_data/CBS_sim.bam.bai'
2023-06-23T22:30:11,376   adding 'tests/test_data/CBS_sim.vcf'
2023-06-23T22:30:11,379   adding 'tests/test_data/CBS_sim_primers.bed'
2023-06-23T22:30:14,634   adding 'tests/test_data/GRCh38.chr21.fa.gz'
2023-06-23T22:30:14,880   adding 'tests/test_data/PKNOX1.fa'
2023-06-23T22:30:14,883   adding 'tests/test_data/__init__.py'
2023-06-23T22:30:14,891   adding 'tests/test_data/appris_human_24_01_2019_selected.fa'
2023-06-23T22:30:14,894   adding 'tests/test_data/appris_human_24_01_2019_selected.fa.fai'
2023-06-23T22:30:14,896   adding 'tests/test_data/appris_human_v1_actual_regions_contigs.txt'
2023-06-23T22:30:14,899   adding 'tests/test_data/appris_human_v1_actual_regions_gene_ids.txt'
2023-06-23T22:30:14,902   adding 'tests/test_data/appris_human_v1_actual_regions_trx_ids.txt'
2023-06-23T22:30:14,906   adding 'tests/test_data/gencode.v29.annotation.gtf'
2023-06-23T22:30:14,910   adding 'tests/test_data/test_preprocess.bam'
2023-06-23T22:30:14,913   adding 'tests/test_data/test_preprocess.bam.bai'
2023-06-23T22:30:14,917   adding 'tests/test_data/test_preprocess.sam'
2023-06-23T22:30:14,920   adding 'tests/test_data/test_preprocess.sort.bam'
2023-06-23T22:30:14,923   adding 'tests/test_data/test_preprocess.sort.bam.bai'
2023-06-23T22:30:14,937   adding 'satmut_utils-1.0.3.dist-info/LICENSE.txt'
2023-06-23T22:30:14,941   adding 'satmut_utils-1.0.3.dist-info/METADATA'
2023-06-23T22:30:14,943   adding 'satmut_utils-1.0.3.dist-info/WHEEL'
2023-06-23T22:30:14,945   adding 'satmut_utils-1.0.3.dist-info/entry_points.txt'
2023-06-23T22:30:14,947   adding 'satmut_utils-1.0.3.dist-info/top_level.txt'
2023-06-23T22:30:14,950   adding 'satmut_utils-1.0.3.dist-info/RECORD'
2023-06-23T22:30:15,270   removing build/bdist.linux-armv7l/wheel
2023-06-23T22:30:15,463   Building wheel for satmut-utils (pyproject.toml): finished with status 'done'
2023-06-23T22:30:16,150   Created wheel for satmut-utils: filename=satmut_utils-1.0.3-py3-none-any.whl size=11988346 sha256=59c120e0a32ed07a847cb94d055d007d238e8c9aa7ec6bbe5c792542ffeab2ca
2023-06-23T22:30:16,152   Stored in directory: /tmp/pip-ephem-wheel-cache-y3fkao9p/wheels/33/18/a1/d833cfe6aad6377d364f0cc5bc2d8b8156ab910c40cfb0c418
2023-06-23T22:30:16,200 Successfully built satmut-utils
2023-06-23T22:30:17,157 Removed build tracker: '/tmp/pip-build-tracker-kvx93z8t'