2023-06-27T11:29:29,734 Created temporary directory: /tmp/pip-build-tracker-qqsjkdop 2023-06-27T11:29:29,735 Initialized build tracking at /tmp/pip-build-tracker-qqsjkdop 2023-06-27T11:29:29,735 Created build tracker: /tmp/pip-build-tracker-qqsjkdop 2023-06-27T11:29:29,735 Entered build tracker: /tmp/pip-build-tracker-qqsjkdop 2023-06-27T11:29:29,736 Created temporary directory: /tmp/pip-wheel-tyqi3lmw 2023-06-27T11:29:29,739 Created temporary directory: /tmp/pip-ephem-wheel-cache-p37p8rdi 2023-06-27T11:29:29,762 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-27T11:29:29,765 2 location(s) to search for versions of filter-vcf: 2023-06-27T11:29:29,765 * https://pypi.org/simple/filter-vcf/ 2023-06-27T11:29:29,765 * https://www.piwheels.org/simple/filter-vcf/ 2023-06-27T11:29:29,766 Fetching project page and analyzing links: https://pypi.org/simple/filter-vcf/ 2023-06-27T11:29:29,766 Getting page https://pypi.org/simple/filter-vcf/ 2023-06-27T11:29:29,768 Found index url https://pypi.org/simple/ 2023-06-27T11:29:29,829 Fetched page https://pypi.org/simple/filter-vcf/ as application/vnd.pypi.simple.v1+json 2023-06-27T11:29:29,834 Found link https://files.pythonhosted.org/packages/14/ad/12d1fdc43822ea8fad6b66b7c93b08c28557af47c52287f67716b90a690b/filter-vcf-0.1.0.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9), version: 0.1.0 2023-06-27T11:29:29,834 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/12/eb/b640265581c431f4e98b2dbbd41e34114d721db0305107f7c9d5c063e920/filter_vcf-0.1.0-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9) 2023-06-27T11:29:29,835 Found link https://files.pythonhosted.org/packages/50/e5/08657e90e93689c57faf85795fdcfaac249b66d3f069f5725949e597b84e/filter-vcf-0.1.1.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9), version: 0.1.1 2023-06-27T11:29:29,835 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/d1/56/70b781d8753d7f69b7e5a991ee1f5740d1595576edd5eb8aefe3fec5c064/filter_vcf-0.1.1-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9) 2023-06-27T11:29:29,835 Found link https://files.pythonhosted.org/packages/8f/4c/fe3c1f76d1fc7996baf74e0dc400c89592380b0e3b1cb3ed0b168c177f71/filter-vcf-0.1.2.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.2 2023-06-27T11:29:29,836 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/b9/72/b89bd2c386d058530a56990642d3a0fcd8c71d33bfe714d993a9c5f15585/filter_vcf-0.1.2-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,836 Found link https://files.pythonhosted.org/packages/83/46/baaec6297e339090a3343e1d91c434b8544cb70a57b6086a4af4ff1860b0/filter-vcf-0.1.3.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.3 2023-06-27T11:29:29,837 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/27/12/ef62720440565208c200a19ee704a8123099027b31800716db7925bb8fad/filter_vcf-0.1.3-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,837 Found link https://files.pythonhosted.org/packages/cf/62/2c8c337c9df456769247e60fcaeda7efe002dd120de4eb8252baaa3ac455/filter-vcf-0.1.5.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.5 2023-06-27T11:29:29,838 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/00/ac/be7ad81fdd7d9fbc9e020d57c5c13a369b803ade93888daf6b7483303101/filter_vcf-0.1.5-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,838 Found link https://files.pythonhosted.org/packages/c8/97/d7de1314db39974a704f73a5b110d13b8c3f8f37327f08dd2c2f72748780/filter-vcf-0.1.6.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.6 2023-06-27T11:29:29,839 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/af/88/0f9d2554cddc7c3575b75bc0f07403038e2c613c9a949bb7b818b76c378e/filter_vcf-0.1.6-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,839 Found link https://files.pythonhosted.org/packages/ea/73/7c3724cc1f3c326be82a0cb36bfceb5135ca52cbb5dee4a60b4774388a2a/filter-vcf-0.1.7.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.7 2023-06-27T11:29:29,840 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/1e/52/77a04dd35cd44a330ead570531debce6f196874696fe73746e8fa5869d59/filter_vcf-0.1.7-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,840 Found link https://files.pythonhosted.org/packages/fe/83/daf68a8a1f0a074bbf4730dd5f56058ec2efe5da99e49a12fddfa58dc4ee/filter-vcf-0.1.8.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.8 2023-06-27T11:29:29,841 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/91/b7/d04193513dc26a9cd5f7867545b0e250123df8a0903cabc1693580309b6b/filter_vcf-0.1.8-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,841 Found link https://files.pythonhosted.org/packages/18/0e/29ccb5b65d4623aef0f0aab2b20d85cde319c3f337722712e05e38a39dc7/filter-vcf-0.1.9.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.9 2023-06-27T11:29:29,842 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/c2/ac/657af2316cf88bd493dceff5e8af8dab90ac1847c695e616ea99a2a9bc05/filter_vcf-0.1.9-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,842 Found link https://files.pythonhosted.org/packages/e3/96/ca2db1df2b02f4f7efc87655263c7680331d732fee7f5df0a30b82a4a7ca/filter-vcf-0.1.10.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.10 2023-06-27T11:29:29,843 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/1c/fa/1f4a4e573b2e1baf5114d38bb5872e5284386e2f7fe7093acd5070932258/filter_vcf-0.1.10-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,843 Found link https://files.pythonhosted.org/packages/8f/4f/8b743bcf30a675d7a4bc0f19aee39c445cd7ef8dda34faaf0ec0e2d4ec33/filter-vcf-0.1.11.tar.gz (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11), version: 0.1.11 2023-06-27T11:29:29,843 Skipping link: No binaries permitted for filter-vcf: https://files.pythonhosted.org/packages/70/01/fd5dbf0df70b6be4e0d183e609320c296f8e47b403caa1ea2992b06e13e9/filter_vcf-0.1.11-py3-none-any.whl (from https://pypi.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:29,844 Fetching project page and analyzing links: https://www.piwheels.org/simple/filter-vcf/ 2023-06-27T11:29:29,844 Getting page https://www.piwheels.org/simple/filter-vcf/ 2023-06-27T11:29:29,845 Found index url https://www.piwheels.org/simple/ 2023-06-27T11:29:30,020 Fetched page https://www.piwheels.org/simple/filter-vcf/ as text/html 2023-06-27T11:29:30,024 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.10-py3-none-any.whl#sha256=5e68ac12e487be416875c9a8fc5abd20c509f210dde6c698cdcb5512d71f515e (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:30,024 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.9-py3-none-any.whl#sha256=ddc62e955ef1ffb786bf440c72f343ca72430c64391820aaf42eeec175e5b42d (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:30,025 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.8-py3-none-any.whl#sha256=92b2eebdd085a0cdf33065ef0231c6a924ac85541eb2374fd0433eb13dd8814b (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:30,025 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.7-py3-none-any.whl#sha256=a3af7c36936d7ed5726d2ec551662bb08d965445b853291b083d72eb92fe3737 (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:30,025 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.6-py3-none-any.whl#sha256=1ad033676b48feacbb3e0cdb862df3796cb5f70c6c948bc9d6fd124270bb62b1 (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:30,025 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.5-py3-none-any.whl#sha256=3b01c099b9fd4b745912e394121f61068ebecda6199dc31fb0d90c3ac74d532f (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:30,026 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.3-py3-none-any.whl#sha256=52246d248eaf144956a066b9537744d63d83869ff5e1fd8760215709646c5cba (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:30,026 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.2-py3-none-any.whl#sha256=c86db06a4980a9501e56ab8bcde8ce9b87f00c0dabda8dba7cd2bdd14096a842 (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9,<3.11) 2023-06-27T11:29:30,026 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.1-py3-none-any.whl#sha256=0751980f601764866fa2fec061be6e156b827f91a80d75f137985d21c8ce04b7 (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9) 2023-06-27T11:29:30,026 Skipping link: No binaries permitted for filter-vcf: https://www.piwheels.org/simple/filter-vcf/filter_vcf-0.1.0-py3-none-any.whl#sha256=dc92397b7db3772b542b10878d03d673d7227377235dbc6e72cb184ea0bccacd (from https://www.piwheels.org/simple/filter-vcf/) (requires-python:>=3.9) 2023-06-27T11:29:30,026 Skipping link: not a file: https://www.piwheels.org/simple/filter-vcf/ 2023-06-27T11:29:30,027 Skipping link: not a file: https://pypi.org/simple/filter-vcf/ 2023-06-27T11:29:30,045 Given no hashes to check 1 links for project 'filter-vcf': discarding no candidates 2023-06-27T11:29:30,062 Collecting filter-vcf==0.1.11 2023-06-27T11:29:30,064 Created temporary directory: /tmp/pip-unpack-n1jqift2 2023-06-27T11:29:30,217 Downloading filter-vcf-0.1.11.tar.gz (217 kB) 2023-06-27T11:29:30,320 Added filter-vcf==0.1.11 from https://files.pythonhosted.org/packages/8f/4f/8b743bcf30a675d7a4bc0f19aee39c445cd7ef8dda34faaf0ec0e2d4ec33/filter-vcf-0.1.11.tar.gz to build tracker '/tmp/pip-build-tracker-qqsjkdop' 2023-06-27T11:29:30,325 Created temporary directory: /tmp/pip-build-env-0mp4oqkq 2023-06-27T11:29:30,334 Installing build dependencies: started 2023-06-27T11:29:30,335 Running command pip subprocess to install build dependencies 2023-06-27T11:29:31,540 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-06-27T11:29:31,899 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-27T11:29:32,459 Collecting pdm-pep517>=0.12.0 2023-06-27T11:29:32,491 Using cached https://www.piwheels.org/simple/pdm-pep517/pdm_pep517-1.1.4-py3-none-any.whl (216 kB) 2023-06-27T11:29:33,993 Installing collected packages: pdm-pep517 2023-06-27T11:29:34,489 Successfully installed pdm-pep517-1.1.4 2023-06-27T11:29:34,704 Installing build dependencies: finished with status 'done' 2023-06-27T11:29:34,708 Getting requirements to build wheel: started 2023-06-27T11:29:34,709 Running command Getting requirements to build wheel 2023-06-27T11:29:35,187 Getting requirements to build wheel: finished with status 'done' 2023-06-27T11:29:35,192 Created temporary directory: /tmp/pip-modern-metadata-av357d3p 2023-06-27T11:29:35,195 Preparing metadata (pyproject.toml): started 2023-06-27T11:29:35,196 Running command Preparing metadata (pyproject.toml) 2023-06-27T11:29:35,636 /tmp/pip-build-env-0mp4oqkq/overlay/lib/python3.9/site-packages/pdm/pep517/api.py:51: PDMWarning: No license files are matched with glob patterns ['LICENSES/*', 'LICEN[CS]E*', 'COPYING*', 'NOTICE*', 'AUTHORS*']. 2023-06-27T11:29:35,637 for license_file in builder.find_license_files(): 2023-06-27T11:29:35,673 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-27T11:29:35,679 Source in /tmp/pip-wheel-tyqi3lmw/filter-vcf_e980bd862f864cde985e136f54a6ce5f has version 0.1.11, which satisfies requirement filter-vcf==0.1.11 from https://files.pythonhosted.org/packages/8f/4f/8b743bcf30a675d7a4bc0f19aee39c445cd7ef8dda34faaf0ec0e2d4ec33/filter-vcf-0.1.11.tar.gz 2023-06-27T11:29:35,680 Removed filter-vcf==0.1.11 from https://files.pythonhosted.org/packages/8f/4f/8b743bcf30a675d7a4bc0f19aee39c445cd7ef8dda34faaf0ec0e2d4ec33/filter-vcf-0.1.11.tar.gz from build tracker '/tmp/pip-build-tracker-qqsjkdop' 2023-06-27T11:29:35,686 Created temporary directory: /tmp/pip-unpack-rsbvx5vk 2023-06-27T11:29:35,686 Building wheels for collected packages: filter-vcf 2023-06-27T11:29:35,690 Created temporary directory: /tmp/pip-wheel-39mwei6m 2023-06-27T11:29:35,691 Destination directory: /tmp/pip-wheel-39mwei6m 2023-06-27T11:29:35,693 Building wheel for filter-vcf (pyproject.toml): started 2023-06-27T11:29:35,694 Running command Building wheel for filter-vcf (pyproject.toml) 2023-06-27T11:29:36,156 - Adding filter_vcf/__init__.py 2023-06-27T11:29:36,157 - Adding filter_vcf/filter_vcf.py 2023-06-27T11:29:36,158 - Adding filter_vcf/process.py 2023-06-27T11:29:36,158 - Adding filter_vcf/util/__init__.py 2023-06-27T11:29:36,158 - Adding filter_vcf/util/addDepth.py 2023-06-27T11:29:36,159 - Adding filter_vcf/util/checkArgs.py 2023-06-27T11:29:36,159 - Adding filter_vcf/util/cleanAD.py 2023-06-27T11:29:36,159 - Adding filter_vcf/util/cleanGT.py 2023-06-27T11:29:36,159 - Adding filter_vcf/util/convertChrName.py 2023-06-27T11:29:36,159 - Adding filter_vcf/util/detectVcf.py 2023-06-27T11:29:36,160 - Adding filter_vcf/util/readVcf.py 2023-06-27T11:29:36,160 - Adding filter_vcf/util/removeNonRef.py 2023-06-27T11:29:36,160 - Adding filter_vcf/util/sortVcf.py 2023-06-27T11:29:36,160 - Adding filter_vcf/util/unique.py 2023-06-27T11:29:36,160 - Adding filter_vcf/util/userFilter.py 2023-06-27T11:29:36,161 - Adding filter_vcf/util/writeVcf.py 2023-06-27T11:29:36,161 - Adding filter_vcf-0.1.11.dist-info/WHEEL 2023-06-27T11:29:36,161 - Adding filter_vcf-0.1.11.dist-info/METADATA 2023-06-27T11:29:36,192 Building wheel for filter-vcf (pyproject.toml): finished with status 'done' 2023-06-27T11:29:36,197 Created wheel for filter-vcf: filename=filter_vcf-0.1.11-py3-none-any.whl size=12145 sha256=1463242c9249e9abac38e6e993bacf8dd973c977d633a0cea00a2a893bef66e0 2023-06-27T11:29:36,198 Stored in directory: /tmp/pip-ephem-wheel-cache-p37p8rdi/wheels/11/b8/88/9475b3a2a5da5fd7c2c0a6e47b1737ad0b6dd25965d06467db 2023-06-27T11:29:36,208 Successfully built filter-vcf 2023-06-27T11:29:36,212 Removed build tracker: '/tmp/pip-build-tracker-qqsjkdop'