2023-06-27T16:27:02,274 Created temporary directory: /tmp/pip-build-tracker-5_f5l6et 2023-06-27T16:27:02,277 Initialized build tracking at /tmp/pip-build-tracker-5_f5l6et 2023-06-27T16:27:02,277 Created build tracker: /tmp/pip-build-tracker-5_f5l6et 2023-06-27T16:27:02,278 Entered build tracker: /tmp/pip-build-tracker-5_f5l6et 2023-06-27T16:27:02,279 Created temporary directory: /tmp/pip-wheel-6a7tg7zn 2023-06-27T16:27:02,287 Created temporary directory: /tmp/pip-ephem-wheel-cache-1jut7p74 2023-06-27T16:27:02,338 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-27T16:27:02,346 2 location(s) to search for versions of pyranges: 2023-06-27T16:27:02,346 * https://pypi.org/simple/pyranges/ 2023-06-27T16:27:02,346 * https://www.piwheels.org/simple/pyranges/ 2023-06-27T16:27:02,347 Fetching project page and analyzing links: https://pypi.org/simple/pyranges/ 2023-06-27T16:27:02,348 Getting page https://pypi.org/simple/pyranges/ 2023-06-27T16:27:02,352 Found 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2023-06-27T16:27:03,056 Skipping link: No binaries permitted for pyranges: https://www.piwheels.org/simple/pyranges/pyranges-0.0.3-py3-none-any.whl#sha256=db33a73c7a071e2fbd0ff95a4b32ff6d1412069576b7f8952cc773c0a67d8aa0 (from https://www.piwheels.org/simple/pyranges/) 2023-06-27T16:27:03,057 Skipping link: No binaries permitted for pyranges: https://www.piwheels.org/simple/pyranges/pyranges-0.0.2-py3-none-any.whl#sha256=13ff8170eeb96f520d59fe40c76b03aefc380a69fd430237b2f1303b3f3c8d89 (from https://www.piwheels.org/simple/pyranges/) 2023-06-27T16:27:03,057 Skipping link: No binaries permitted for pyranges: https://www.piwheels.org/simple/pyranges/pyranges-0.0.1-py3-none-any.whl#sha256=43b9f740545b22d3dccf04f6057d5713e33474cabea480df7fbddf28faa1cf7b (from https://www.piwheels.org/simple/pyranges/) 2023-06-27T16:27:03,058 Skipping link: not a file: https://www.piwheels.org/simple/pyranges/ 2023-06-27T16:27:03,058 Skipping link: not a file: https://pypi.org/simple/pyranges/ 2023-06-27T16:27:03,133 Given no hashes to check 1 links for project 'pyranges': discarding no candidates 2023-06-27T16:27:03,166 Collecting pyranges==0.0.128 2023-06-27T16:27:03,170 Created temporary directory: /tmp/pip-unpack-bn_lrbv2 2023-06-27T16:27:03,611 Downloading pyranges-0.0.128.tar.gz (1.5 MB) 2023-06-27T16:27:05,391 Added pyranges==0.0.128 from https://files.pythonhosted.org/packages/a7/0d/fe747e6dba9aa191fae04e4cf13c2642919221bbacfbbd2ca7d7ddcb917d/pyranges-0.0.128.tar.gz to build tracker '/tmp/pip-build-tracker-5_f5l6et' 2023-06-27T16:27:05,408 Created temporary directory: /tmp/pip-build-env-7wunttgv 2023-06-27T16:27:05,429 Installing build dependencies: started 2023-06-27T16:27:05,431 Running command pip subprocess to install build dependencies 2023-06-27T16:27:08,134 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-06-27T16:27:08,942 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-27T16:27:12,815 Collecting setuptools>=61.0.0 2023-06-27T16:27:13,009 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-06-27T16:27:13,621 Collecting wheel 2023-06-27T16:27:13,659 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-06-27T16:27:16,910 Collecting cython 2023-06-27T16:27:17,390 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.35-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2023-06-27T16:27:18,389 Collecting setuptools_scm[toml]>=6.2 2023-06-27T16:27:18,429 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB) 2023-06-27T16:27:19,334 Collecting packaging>=20.0 (from setuptools_scm[toml]>=6.2) 2023-06-27T16:27:19,369 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-06-27T16:27:19,632 Collecting typing-extensions (from setuptools_scm[toml]>=6.2) 2023-06-27T16:27:19,667 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.6.3-py3-none-any.whl (31 kB) 2023-06-27T16:27:19,929 Collecting tomli>=1.0.0 (from setuptools_scm[toml]>=6.2) 2023-06-27T16:27:19,961 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2023-06-27T16:27:21,064 Collecting importlib-metadata (from setuptools_scm[toml]>=6.2) 2023-06-27T16:27:21,103 Using cached https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.7.0-py3-none-any.whl (22 kB) 2023-06-27T16:27:22,679 Collecting zipp>=0.5 (from importlib-metadata->setuptools_scm[toml]>=6.2) 2023-06-27T16:27:22,712 Using cached https://www.piwheels.org/simple/zipp/zipp-3.15.0-py3-none-any.whl (6.8 kB) 2023-06-27T16:27:28,003 Installing collected packages: zipp, wheel, typing-extensions, tomli, setuptools, packaging, cython, importlib-metadata, setuptools_scm 2023-06-27T16:27:28,531 Creating /tmp/pip-build-env-7wunttgv/overlay/bin 2023-06-27T16:27:28,536 changing mode of /tmp/pip-build-env-7wunttgv/overlay/bin/wheel to 755 2023-06-27T16:27:38,575 changing mode of /tmp/pip-build-env-7wunttgv/overlay/bin/cygdb to 755 2023-06-27T16:27:38,580 changing mode of /tmp/pip-build-env-7wunttgv/overlay/bin/cython to 755 2023-06-27T16:27:38,585 changing mode of /tmp/pip-build-env-7wunttgv/overlay/bin/cythonize to 755 2023-06-27T16:27:39,149 Successfully installed cython-0.29.35 importlib-metadata-6.7.0 packaging-23.1 setuptools-68.0.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.6.3 wheel-0.40.0 zipp-3.15.0 2023-06-27T16:27:39,756 Installing build dependencies: finished with status 'done' 2023-06-27T16:27:39,768 Getting requirements to build wheel: started 2023-06-27T16:27:39,770 Running command Getting requirements to build wheel 2023-06-27T16:27:42,511 running egg_info 2023-06-27T16:27:42,532 writing pyranges.egg-info/PKG-INFO 2023-06-27T16:27:42,537 writing dependency_links to pyranges.egg-info/dependency_links.txt 2023-06-27T16:27:42,542 writing requirements to pyranges.egg-info/requires.txt 2023-06-27T16:27:42,545 writing top-level names to pyranges.egg-info/top_level.txt 2023-06-27T16:27:42,701 /tmp/pip-build-env-7wunttgv/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-27T16:27:42,702 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-27T16:27:42,702 listing git files failed - pretending there aren't any 2023-06-27T16:27:42,725 reading manifest file 'pyranges.egg-info/SOURCES.txt' 2023-06-27T16:27:42,740 adding license file 'LICENSE' 2023-06-27T16:27:42,763 writing manifest file 'pyranges.egg-info/SOURCES.txt' 2023-06-27T16:27:43,000 Getting requirements to build wheel: finished with status 'done' 2023-06-27T16:27:43,029 Created temporary directory: /tmp/pip-modern-metadata-1f_zehnw 2023-06-27T16:27:43,035 Preparing metadata (pyproject.toml): started 2023-06-27T16:27:43,037 Running command Preparing metadata (pyproject.toml) 2023-06-27T16:27:45,624 running dist_info 2023-06-27T16:27:45,642 creating /tmp/pip-modern-metadata-1f_zehnw/pyranges.egg-info 2023-06-27T16:27:45,658 writing /tmp/pip-modern-metadata-1f_zehnw/pyranges.egg-info/PKG-INFO 2023-06-27T16:27:45,664 writing dependency_links to /tmp/pip-modern-metadata-1f_zehnw/pyranges.egg-info/dependency_links.txt 2023-06-27T16:27:45,668 writing requirements to /tmp/pip-modern-metadata-1f_zehnw/pyranges.egg-info/requires.txt 2023-06-27T16:27:45,670 writing top-level names to /tmp/pip-modern-metadata-1f_zehnw/pyranges.egg-info/top_level.txt 2023-06-27T16:27:45,673 writing manifest file '/tmp/pip-modern-metadata-1f_zehnw/pyranges.egg-info/SOURCES.txt' 2023-06-27T16:27:45,813 /tmp/pip-build-env-7wunttgv/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-27T16:27:45,813 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-27T16:27:45,814 listing git files failed - pretending there aren't any 2023-06-27T16:27:45,835 reading manifest file '/tmp/pip-modern-metadata-1f_zehnw/pyranges.egg-info/SOURCES.txt' 2023-06-27T16:27:45,842 adding license file 'LICENSE' 2023-06-27T16:27:45,854 writing manifest file '/tmp/pip-modern-metadata-1f_zehnw/pyranges.egg-info/SOURCES.txt' 2023-06-27T16:27:45,856 creating '/tmp/pip-modern-metadata-1f_zehnw/pyranges-0.0.128.dist-info' 2023-06-27T16:27:46,193 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-27T16:27:46,209 Source in /tmp/pip-wheel-6a7tg7zn/pyranges_7450d67d8eb64db29b8f31baa4ff0704 has version 0.0.128, which satisfies requirement pyranges==0.0.128 from https://files.pythonhosted.org/packages/a7/0d/fe747e6dba9aa191fae04e4cf13c2642919221bbacfbbd2ca7d7ddcb917d/pyranges-0.0.128.tar.gz 2023-06-27T16:27:46,211 Removed pyranges==0.0.128 from https://files.pythonhosted.org/packages/a7/0d/fe747e6dba9aa191fae04e4cf13c2642919221bbacfbbd2ca7d7ddcb917d/pyranges-0.0.128.tar.gz from build tracker '/tmp/pip-build-tracker-5_f5l6et' 2023-06-27T16:27:46,222 Created temporary directory: /tmp/pip-unpack-4cnz4o1v 2023-06-27T16:27:46,223 Building wheels for collected packages: pyranges 2023-06-27T16:27:46,233 Created temporary directory: /tmp/pip-wheel-v1fhtale 2023-06-27T16:27:46,233 Destination directory: /tmp/pip-wheel-v1fhtale 2023-06-27T16:27:46,238 Building wheel for pyranges (pyproject.toml): started 2023-06-27T16:27:46,240 Running command Building wheel for pyranges (pyproject.toml) 2023-06-27T16:27:48,757 running bdist_wheel 2023-06-27T16:27:48,813 running build 2023-06-27T16:27:48,813 running build_py 2023-06-27T16:27:48,832 creating build 2023-06-27T16:27:48,833 creating build/lib 2023-06-27T16:27:48,834 creating build/lib/pyranges 2023-06-27T16:27:48,837 copying pyranges/statistics.py -> build/lib/pyranges 2023-06-27T16:27:48,843 copying pyranges/multithreaded.py -> build/lib/pyranges 2023-06-27T16:27:48,847 copying pyranges/__init__.py -> build/lib/pyranges 2023-06-27T16:27:48,853 copying pyranges/tostring2.py -> build/lib/pyranges 2023-06-27T16:27:48,857 copying pyranges/genomicfeatures.py -> build/lib/pyranges 2023-06-27T16:27:48,863 copying pyranges/subset.py -> build/lib/pyranges 2023-06-27T16:27:48,866 copying pyranges/data.py -> build/lib/pyranges 2023-06-27T16:27:48,871 copying pyranges/readers.py -> build/lib/pyranges 2023-06-27T16:27:48,876 copying pyranges/multioverlap.py -> build/lib/pyranges 2023-06-27T16:27:48,880 copying pyranges/stats.py -> build/lib/pyranges 2023-06-27T16:27:48,884 copying pyranges/pyranges_main.py -> build/lib/pyranges 2023-06-27T16:27:48,901 copying pyranges/helpers.py -> build/lib/pyranges 2023-06-27T16:27:48,904 copying pyranges/get_fasta.py -> build/lib/pyranges 2023-06-27T16:27:48,908 copying pyranges/out.py -> build/lib/pyranges 2023-06-27T16:27:48,914 creating build/lib/book 2023-06-27T16:27:48,916 copying book/exons.py -> build/lib/book 2023-06-27T16:27:48,920 copying book/make_book.py -> build/lib/book 2023-06-27T16:27:48,924 creating build/lib/docs 2023-06-27T16:27:48,926 copying docs/conf.py -> build/lib/docs 2023-06-27T16:27:48,931 creating build/lib/tests 2023-06-27T16:27:48,933 copying tests/helpers.py -> build/lib/tests 2023-06-27T16:27:48,941 creating build/lib/pyranges/methods 2023-06-27T16:27:48,943 copying pyranges/methods/subsequence.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,947 copying pyranges/methods/k_nearest.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,951 copying pyranges/methods/insert.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,954 copying pyranges/methods/statistics.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,958 copying pyranges/methods/new_position.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,962 copying pyranges/methods/max_disjoint.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,965 copying pyranges/methods/itergrs.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,968 copying pyranges/methods/subtraction.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,971 copying pyranges/methods/cluster.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,975 copying pyranges/methods/boundaries.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,978 copying pyranges/methods/__init__.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,981 copying pyranges/methods/init.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,985 copying pyranges/methods/intersection.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,989 copying pyranges/methods/summary.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,992 copying pyranges/methods/split.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,997 copying pyranges/methods/call.py -> build/lib/pyranges/methods 2023-06-27T16:27:48,999 copying pyranges/methods/drop.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,003 copying pyranges/methods/join.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,007 copying pyranges/methods/concat.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,011 copying pyranges/methods/nearest.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,015 copying pyranges/methods/coverage.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,018 copying pyranges/methods/sort.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,022 copying pyranges/methods/to_rle.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,025 copying pyranges/methods/windows.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,029 copying pyranges/methods/attr.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,032 copying pyranges/methods/merge.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,036 copying pyranges/methods/drop_duplicates.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,039 copying pyranges/methods/spliced_subsequence.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,044 copying pyranges/methods/getitem.py -> build/lib/pyranges/methods 2023-06-27T16:27:49,050 creating build/lib/tests/property_based 2023-06-27T16:27:49,052 copying tests/property_based/test_unary.py -> build/lib/tests/property_based 2023-06-27T16:27:49,056 copying tests/property_based/__init__.py -> build/lib/tests/property_based 2023-06-27T16:27:49,059 copying tests/property_based/test_binary.py -> build/lib/tests/property_based 2023-06-27T16:27:49,065 copying tests/property_based/test_do_not_error.py -> build/lib/tests/property_based 2023-06-27T16:27:49,069 copying tests/property_based/hypothesis_helper.py -> build/lib/tests/property_based 2023-06-27T16:27:49,076 creating build/lib/tests/unit 2023-06-27T16:27:49,077 copying tests/unit/k_nearest.py -> build/lib/tests/unit 2023-06-27T16:27:49,082 copying tests/unit/test_count_overlaps.py -> build/lib/tests/unit 2023-06-27T16:27:49,085 copying tests/unit/statistics.py -> build/lib/tests/unit 2023-06-27T16:27:49,089 copying tests/unit/test_change_chromosome_custom.py -> build/lib/tests/unit 2023-06-27T16:27:49,093 copying tests/unit/test_concat.py -> build/lib/tests/unit 2023-06-27T16:27:49,096 copying tests/unit/__init__.py -> build/lib/tests/unit 2023-06-27T16:27:49,099 copying tests/unit/test_stranded.py -> build/lib/tests/unit 2023-06-27T16:27:49,103 copying tests/unit/test_getset_attr.py -> build/lib/tests/unit 2023-06-27T16:27:49,106 copying tests/unit/test_guessers.py -> build/lib/tests/unit 2023-06-27T16:27:49,110 copying tests/unit/conftest.py -> build/lib/tests/unit 2023-06-27T16:27:49,114 copying tests/unit/test_io.py -> build/lib/tests/unit 2023-06-27T16:27:49,117 copying tests/unit/test_genomicfeatures.py -> build/lib/tests/unit 2023-06-27T16:27:49,121 copying tests/unit/test_pickle.py -> build/lib/tests/unit 2023-06-27T16:27:49,125 creating build/lib/tests/unit/join 2023-06-27T16:27:49,127 copying tests/unit/join/test_join.py -> build/lib/tests/unit/join 2023-06-27T16:27:49,132 creating build/lib/tests/unit/df_dict_mismatch 2023-06-27T16:27:49,134 copying tests/unit/df_dict_mismatch/test_mismatch.py -> build/lib/tests/unit/df_dict_mismatch 2023-06-27T16:27:49,139 creating build/lib/tests/unit/slack 2023-06-27T16:27:49,141 copying tests/unit/slack/test_slack.py -> build/lib/tests/unit/slack 2023-06-27T16:27:49,146 creating build/lib/tests/unit/out 2023-06-27T16:27:49,148 copying tests/unit/out/test_out.py -> build/lib/tests/unit/out 2023-06-27T16:27:49,152 creating build/lib/tests/unit/getitem 2023-06-27T16:27:49,154 copying tests/unit/getitem/test_getitem.py -> build/lib/tests/unit/getitem 2023-06-27T16:27:49,158 creating build/lib/tests/unit/data 2023-06-27T16:27:49,160 copying tests/unit/data/test_data.py -> build/lib/tests/unit/data 2023-06-27T16:27:49,165 creating build/lib/tests/unit/new_position 2023-06-27T16:27:49,167 copying tests/unit/new_position/test_new_position.py -> build/lib/tests/unit/new_position 2023-06-27T16:27:49,172 creating build/lib/tests/unit/windows 2023-06-27T16:27:49,174 copying tests/unit/windows/test_windows.py -> build/lib/tests/unit/windows 2023-06-27T16:27:49,179 creating build/lib/tests/unit/unstrand 2023-06-27T16:27:49,181 copying tests/unit/unstrand/test_unstrand.py -> build/lib/tests/unit/unstrand 2023-06-27T16:27:49,187 creating build/lib/tests/unit/unit 2023-06-27T16:27:49,188 copying tests/unit/unit/__init__.py -> build/lib/tests/unit/unit 2023-06-27T16:27:49,191 running egg_info 2023-06-27T16:27:49,222 writing pyranges.egg-info/PKG-INFO 2023-06-27T16:27:49,226 writing dependency_links to pyranges.egg-info/dependency_links.txt 2023-06-27T16:27:49,229 writing requirements to pyranges.egg-info/requires.txt 2023-06-27T16:27:49,231 writing top-level names to pyranges.egg-info/top_level.txt 2023-06-27T16:27:49,338 /tmp/pip-build-env-7wunttgv/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-06-27T16:27:49,338 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-06-27T16:27:49,338 listing git files failed - pretending there aren't any 2023-06-27T16:27:49,358 reading manifest file 'pyranges.egg-info/SOURCES.txt' 2023-06-27T16:27:49,394 adding license file 'LICENSE' 2023-06-27T16:27:49,417 writing manifest file 'pyranges.egg-info/SOURCES.txt' 2023-06-27T16:27:49,451 copying pyranges/docs -> build/lib/pyranges 2023-06-27T16:27:49,455 copying book/_bookdown.yml -> build/lib/book 2023-06-27T16:27:49,459 copying book/build_book.yml -> build/lib/book 2023-06-27T16:27:49,463 copying book/colocalization.Rmd -> build/lib/book 2023-06-27T16:27:49,467 copying book/compile.R -> build/lib/book 2023-06-27T16:27:49,471 copying book/compile2.R -> build/lib/book 2023-06-27T16:27:49,475 copying book/concat.Rmd -> build/lib/book 2023-06-27T16:27:49,479 copying book/count_overlaps.Rmd -> build/lib/book 2023-06-27T16:27:49,483 copying book/coverage.Rmd -> build/lib/book 2023-06-27T16:27:49,487 copying book/creating.Rmd -> build/lib/book 2023-06-27T16:27:49,491 copying book/custom_methods.Rmd -> build/lib/book 2023-06-27T16:27:49,495 copying book/databases.Rmd -> build/lib/book 2023-06-27T16:27:49,499 copying book/fisher_exact.Rmd -> build/lib/book 2023-06-27T16:27:49,503 copying book/genomicfeatures.Rmd -> build/lib/book 2023-06-27T16:27:49,507 copying book/index.Rmd -> build/lib/book 2023-06-27T16:27:49,511 copying book/insert.Rmd -> build/lib/book 2023-06-27T16:27:49,515 copying book/intersection.Rmd -> build/lib/book 2023-06-27T16:27:49,519 copying book/iterate.Rmd -> build/lib/book 2023-06-27T16:27:49,523 copying book/join.Rmd -> build/lib/book 2023-06-27T16:27:49,527 copying book/knearest.Rmd -> build/lib/book 2023-06-27T16:27:49,531 copying book/manipulation.Rmd -> build/lib/book 2023-06-27T16:27:49,535 copying book/mcc.Rmd -> build/lib/book 2023-06-27T16:27:49,539 copying book/multithreading.Rmd -> build/lib/book 2023-06-27T16:27:49,544 copying book/nearest.Rmd -> build/lib/book 2023-06-27T16:27:49,548 copying book/piping.Rmd -> build/lib/book 2023-06-27T16:27:49,552 copying book/printing.Rmd -> build/lib/book 2023-06-27T16:27:49,556 copying book/pyranges.css -> build/lib/book 2023-06-27T16:27:49,560 copying book/reldist.Rmd -> build/lib/book 2023-06-27T16:27:49,564 copying book/rowbased_statistics.Rmd -> build/lib/book 2023-06-27T16:27:49,568 copying book/runlength_dict.Rmd -> build/lib/book 2023-06-27T16:27:49,572 copying book/runlengths.Rmd -> build/lib/book 2023-06-27T16:27:49,576 copying book/simes.Rmd -> build/lib/book 2023-06-27T16:27:49,580 copying book/single_range_methods.Rmd -> build/lib/book 2023-06-27T16:27:49,585 copying book/sort.Rmd -> build/lib/book 2023-06-27T16:27:49,589 copying book/subset.Rmd -> build/lib/book 2023-06-27T16:27:49,593 copying book/subsetting_pyrles.Rmd -> build/lib/book 2023-06-27T16:27:49,597 copying book/subsetting_rles.Rmd -> build/lib/book 2023-06-27T16:27:49,601 copying book/subtract.Rmd -> build/lib/book 2023-06-27T16:27:49,606 copying book/summary.Rmd -> build/lib/book 2023-06-27T16:27:49,609 copying book/tutorial.Rmd -> build/lib/book 2023-06-27T16:27:49,615 copying book/writing.Rmd -> build/lib/book 2023-06-27T16:27:49,619 copying docs/Makefile -> build/lib/docs 2023-06-27T16:27:49,623 copying docs/index.html -> build/lib/docs 2023-06-27T16:27:49,627 copying docs/index.rst -> build/lib/docs 2023-06-27T16:27:49,631 copying docs/make.bat -> build/lib/docs 2023-06-27T16:27:49,635 copying docs/requirements.txt -> build/lib/docs 2023-06-27T16:27:49,640 creating build/lib/graphs 2023-06-27T16:27:49,641 copying graphs/hypothesis-tested-brightgreen.svg -> build/lib/graphs 2023-06-27T16:27:49,646 copying graphs/main_paper_annotation_binary.png -> build/lib/graphs 2023-06-27T16:27:49,662 copying graphs/memory.png -> build/lib/graphs 2023-06-27T16:27:49,678 copying graphs/time.png -> build/lib/graphs 2023-06-27T16:27:49,691 copying tests/.fuse_hidden0000017200000002 -> build/lib/tests 2023-06-27T16:27:49,697 copying tests/hi -> build/lib/tests 2023-06-27T16:27:49,702 creating build/lib/pyranges/example_data 2023-06-27T16:27:49,704 copying pyranges/example_data/aorta.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,709 copying pyranges/example_data/aorta2.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,714 copying pyranges/example_data/bw.bw -> build/lib/pyranges/example_data 2023-06-27T16:27:49,719 copying pyranges/example_data/chipseq.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,742 copying pyranges/example_data/chipseq_background.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,763 copying pyranges/example_data/chromsizes.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,768 copying pyranges/example_data/control.bam -> build/lib/pyranges/example_data 2023-06-27T16:27:49,777 copying pyranges/example_data/control.bam.bai -> build/lib/pyranges/example_data 2023-06-27T16:27:49,868 copying pyranges/example_data/cpg.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,875 copying pyranges/example_data/ensembl.gtf -> build/lib/pyranges/example_data 2023-06-27T16:27:49,882 copying pyranges/example_data/ensembl_human.gtf.gz -> build/lib/pyranges/example_data 2023-06-27T16:27:49,889 copying pyranges/example_data/exons.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,897 copying pyranges/example_data/f1.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,901 copying pyranges/example_data/f2.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,905 copying pyranges/example_data/gencode_human.gtf.gz -> build/lib/pyranges/example_data 2023-06-27T16:27:49,914 copying pyranges/example_data/lamina.bed -> build/lib/pyranges/example_data 2023-06-27T16:27:49,921 copying pyranges/example_data/ucsc_human.bed.gz -> build/lib/pyranges/example_data 2023-06-27T16:27:49,931 copying tests/unit/chip_10.bed -> build/lib/tests/unit 2023-06-27T16:27:49,935 copying tests/unit/f1.bed -> build/lib/tests/unit 2023-06-27T16:27:49,940 copying tests/unit/f2.bed -> build/lib/tests/unit 2023-06-27T16:27:49,944 copying tests/unit/hi -> build/lib/tests/unit 2023-06-27T16:27:49,948 creating build/lib/tests/unit/test_data 2023-06-27T16:27:49,950 copying tests/unit/test_data/ensembl.gtf -> build/lib/tests/unit/test_data 2023-06-27T16:27:49,957 copying tests/unit/test_data/gencode.gff3 -> build/lib/tests/unit/test_data 2023-06-27T16:27:49,964 copying tests/unit/test_data/test_sorted.bam -> build/lib/tests/unit/test_data 2023-06-27T16:27:49,974 copying tests/unit/test_data/test_sorted.bam.bai -> build/lib/tests/unit/test_data 2023-06-27T16:27:50,139 installing to build/bdist.linux-armv7l/wheel 2023-06-27T16:27:50,139 running install 2023-06-27T16:27:50,201 running install_lib 2023-06-27T16:27:50,217 creating build/bdist.linux-armv7l 2023-06-27T16:27:50,219 creating build/bdist.linux-armv7l/wheel 2023-06-27T16:27:50,222 creating build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,224 copying build/lib/pyranges/statistics.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,230 copying build/lib/pyranges/multithreaded.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,237 creating build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,239 copying build/lib/pyranges/methods/subsequence.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,243 copying build/lib/pyranges/methods/k_nearest.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,248 copying build/lib/pyranges/methods/insert.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,252 copying build/lib/pyranges/methods/statistics.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,255 copying build/lib/pyranges/methods/new_position.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,259 copying build/lib/pyranges/methods/max_disjoint.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,263 copying build/lib/pyranges/methods/itergrs.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,266 copying build/lib/pyranges/methods/subtraction.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,270 copying build/lib/pyranges/methods/cluster.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,274 copying build/lib/pyranges/methods/boundaries.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,278 copying build/lib/pyranges/methods/__init__.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,281 copying build/lib/pyranges/methods/init.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,286 copying build/lib/pyranges/methods/intersection.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,289 copying build/lib/pyranges/methods/summary.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,293 copying build/lib/pyranges/methods/split.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,296 copying build/lib/pyranges/methods/call.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,300 copying build/lib/pyranges/methods/drop.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,304 copying build/lib/pyranges/methods/join.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,309 copying build/lib/pyranges/methods/concat.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,312 copying build/lib/pyranges/methods/nearest.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,317 copying build/lib/pyranges/methods/coverage.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,321 copying build/lib/pyranges/methods/sort.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,324 copying build/lib/pyranges/methods/to_rle.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,328 copying build/lib/pyranges/methods/windows.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,332 copying build/lib/pyranges/methods/attr.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,336 copying build/lib/pyranges/methods/merge.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,339 copying build/lib/pyranges/methods/drop_duplicates.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,343 copying build/lib/pyranges/methods/spliced_subsequence.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,347 copying build/lib/pyranges/methods/getitem.py -> build/bdist.linux-armv7l/wheel/pyranges/methods 2023-06-27T16:27:50,352 creating build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,354 copying build/lib/pyranges/example_data/chromsizes.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,358 copying build/lib/pyranges/example_data/chipseq_background.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,378 copying build/lib/pyranges/example_data/ensembl_human.gtf.gz -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,384 copying build/lib/pyranges/example_data/control.bam.bai -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,471 copying build/lib/pyranges/example_data/control.bam -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,479 copying build/lib/pyranges/example_data/aorta.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,483 copying build/lib/pyranges/example_data/gencode_human.gtf.gz -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,492 copying build/lib/pyranges/example_data/lamina.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,499 copying build/lib/pyranges/example_data/bw.bw -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,503 copying build/lib/pyranges/example_data/ucsc_human.bed.gz -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,511 copying build/lib/pyranges/example_data/ensembl.gtf -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,517 copying build/lib/pyranges/example_data/aorta2.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,520 copying build/lib/pyranges/example_data/f1.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,524 copying build/lib/pyranges/example_data/f2.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,527 copying build/lib/pyranges/example_data/exons.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,535 copying build/lib/pyranges/example_data/chipseq.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,554 copying build/lib/pyranges/example_data/cpg.bed -> build/bdist.linux-armv7l/wheel/pyranges/example_data 2023-06-27T16:27:50,560 copying build/lib/pyranges/__init__.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,565 copying build/lib/pyranges/tostring2.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,570 copying build/lib/pyranges/genomicfeatures.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,575 copying build/lib/pyranges/subset.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,579 copying build/lib/pyranges/data.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,585 copying build/lib/pyranges/readers.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,590 copying build/lib/pyranges/multioverlap.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,594 copying build/lib/pyranges/stats.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,598 copying build/lib/pyranges/docs -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,601 copying build/lib/pyranges/pyranges_main.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,618 copying build/lib/pyranges/helpers.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,621 copying build/lib/pyranges/get_fasta.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,626 copying build/lib/pyranges/out.py -> build/bdist.linux-armv7l/wheel/pyranges 2023-06-27T16:27:50,633 creating build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,635 copying build/lib/book/mcc.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,639 copying build/lib/book/runlengths.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,642 copying build/lib/book/manipulation.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,646 copying build/lib/book/insert.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,650 copying build/lib/book/runlength_dict.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,654 copying build/lib/book/custom_methods.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,657 copying build/lib/book/exons.py -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,661 copying build/lib/book/rowbased_statistics.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,664 copying build/lib/book/subsetting_rles.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,667 copying build/lib/book/subset.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,671 copying build/lib/book/databases.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,675 copying build/lib/book/sort.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,678 copying build/lib/book/build_book.yml -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,682 copying build/lib/book/_bookdown.yml -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,685 copying build/lib/book/reldist.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,689 copying build/lib/book/multithreading.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,694 copying build/lib/book/simes.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,696 copying build/lib/book/nearest.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,700 copying build/lib/book/iterate.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,704 copying build/lib/book/knearest.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,708 copying build/lib/book/piping.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,711 copying build/lib/book/single_range_methods.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,715 copying build/lib/book/index.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,718 copying build/lib/book/make_book.py -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,722 copying build/lib/book/concat.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,726 copying build/lib/book/pyranges.css -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,730 copying build/lib/book/join.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,733 copying build/lib/book/fisher_exact.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,737 copying build/lib/book/count_overlaps.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,741 copying build/lib/book/compile2.R -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,744 copying build/lib/book/tutorial.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,750 copying build/lib/book/coverage.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,754 copying build/lib/book/summary.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,758 copying build/lib/book/writing.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,762 copying build/lib/book/colocalization.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,765 copying build/lib/book/subsetting_pyrles.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,769 copying build/lib/book/genomicfeatures.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,773 copying build/lib/book/creating.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,776 copying build/lib/book/compile.R -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,780 copying build/lib/book/intersection.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,784 copying build/lib/book/printing.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,787 copying build/lib/book/subtract.Rmd -> build/bdist.linux-armv7l/wheel/book 2023-06-27T16:27:50,793 creating build/bdist.linux-armv7l/wheel/docs 2023-06-27T16:27:50,794 copying build/lib/docs/make.bat -> build/bdist.linux-armv7l/wheel/docs 2023-06-27T16:27:50,798 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/docs 2023-06-27T16:27:50,802 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/docs 2023-06-27T16:27:50,805 copying build/lib/docs/index.html -> build/bdist.linux-armv7l/wheel/docs 2023-06-27T16:27:50,809 copying build/lib/docs/Makefile -> build/bdist.linux-armv7l/wheel/docs 2023-06-27T16:27:50,813 copying build/lib/docs/requirements.txt -> build/bdist.linux-armv7l/wheel/docs 2023-06-27T16:27:50,817 creating build/bdist.linux-armv7l/wheel/graphs 2023-06-27T16:27:50,819 copying build/lib/graphs/hypothesis-tested-brightgreen.svg -> build/bdist.linux-armv7l/wheel/graphs 2023-06-27T16:27:50,823 copying build/lib/graphs/memory.png -> build/bdist.linux-armv7l/wheel/graphs 2023-06-27T16:27:50,841 copying build/lib/graphs/main_paper_annotation_binary.png -> build/bdist.linux-armv7l/wheel/graphs 2023-06-27T16:27:50,858 copying build/lib/graphs/time.png -> build/bdist.linux-armv7l/wheel/graphs 2023-06-27T16:27:50,873 creating build/bdist.linux-armv7l/wheel/tests 2023-06-27T16:27:50,875 copying build/lib/tests/.fuse_hidden0000017200000002 -> build/bdist.linux-armv7l/wheel/tests 2023-06-27T16:27:50,881 creating build/bdist.linux-armv7l/wheel/tests/property_based 2023-06-27T16:27:50,883 copying build/lib/tests/property_based/test_unary.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-06-27T16:27:50,888 copying build/lib/tests/property_based/__init__.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-06-27T16:27:50,891 copying build/lib/tests/property_based/test_binary.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-06-27T16:27:50,896 copying build/lib/tests/property_based/test_do_not_error.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-06-27T16:27:50,900 copying build/lib/tests/property_based/hypothesis_helper.py -> build/bdist.linux-armv7l/wheel/tests/property_based 2023-06-27T16:27:50,905 copying build/lib/tests/hi -> build/bdist.linux-armv7l/wheel/tests 2023-06-27T16:27:50,908 copying build/lib/tests/helpers.py -> build/bdist.linux-armv7l/wheel/tests 2023-06-27T16:27:50,914 creating build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,916 copying build/lib/tests/unit/k_nearest.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,923 creating build/bdist.linux-armv7l/wheel/tests/unit/join 2023-06-27T16:27:50,925 copying build/lib/tests/unit/join/test_join.py -> build/bdist.linux-armv7l/wheel/tests/unit/join 2023-06-27T16:27:50,929 copying build/lib/tests/unit/test_count_overlaps.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,933 copying build/lib/tests/unit/statistics.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,936 copying build/lib/tests/unit/test_change_chromosome_custom.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,940 copying build/lib/tests/unit/test_concat.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,945 creating build/bdist.linux-armv7l/wheel/tests/unit/df_dict_mismatch 2023-06-27T16:27:50,946 copying build/lib/tests/unit/df_dict_mismatch/test_mismatch.py -> build/bdist.linux-armv7l/wheel/tests/unit/df_dict_mismatch 2023-06-27T16:27:50,952 creating build/bdist.linux-armv7l/wheel/tests/unit/slack 2023-06-27T16:27:50,953 copying build/lib/tests/unit/slack/test_slack.py -> build/bdist.linux-armv7l/wheel/tests/unit/slack 2023-06-27T16:27:50,958 creating build/bdist.linux-armv7l/wheel/tests/unit/out 2023-06-27T16:27:50,960 copying build/lib/tests/unit/out/test_out.py -> build/bdist.linux-armv7l/wheel/tests/unit/out 2023-06-27T16:27:50,964 copying build/lib/tests/unit/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,969 creating build/bdist.linux-armv7l/wheel/tests/unit/getitem 2023-06-27T16:27:50,970 copying build/lib/tests/unit/getitem/test_getitem.py -> build/bdist.linux-armv7l/wheel/tests/unit/getitem 2023-06-27T16:27:50,974 copying build/lib/tests/unit/hi -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,977 copying build/lib/tests/unit/test_stranded.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,981 copying build/lib/tests/unit/test_getset_attr.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:50,986 creating build/bdist.linux-armv7l/wheel/tests/unit/data 2023-06-27T16:27:50,988 copying build/lib/tests/unit/data/test_data.py -> build/bdist.linux-armv7l/wheel/tests/unit/data 2023-06-27T16:27:50,993 creating build/bdist.linux-armv7l/wheel/tests/unit/new_position 2023-06-27T16:27:50,994 copying build/lib/tests/unit/new_position/test_new_position.py -> build/bdist.linux-armv7l/wheel/tests/unit/new_position 2023-06-27T16:27:50,998 copying build/lib/tests/unit/test_guessers.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:51,002 copying build/lib/tests/unit/conftest.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:51,006 copying build/lib/tests/unit/test_io.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:51,011 creating build/bdist.linux-armv7l/wheel/tests/unit/windows 2023-06-27T16:27:51,012 copying build/lib/tests/unit/windows/test_windows.py -> build/bdist.linux-armv7l/wheel/tests/unit/windows 2023-06-27T16:27:51,017 creating build/bdist.linux-armv7l/wheel/tests/unit/unstrand 2023-06-27T16:27:51,019 copying build/lib/tests/unit/unstrand/test_unstrand.py -> build/bdist.linux-armv7l/wheel/tests/unit/unstrand 2023-06-27T16:27:51,023 copying build/lib/tests/unit/chip_10.bed -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:51,027 creating build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-06-27T16:27:51,029 copying build/lib/tests/unit/test_data/gencode.gff3 -> build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-06-27T16:27:51,036 copying build/lib/tests/unit/test_data/test_sorted.bam.bai -> build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-06-27T16:27:51,112 copying build/lib/tests/unit/test_data/ensembl.gtf -> build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-06-27T16:27:51,118 copying build/lib/tests/unit/test_data/test_sorted.bam -> build/bdist.linux-armv7l/wheel/tests/unit/test_data 2023-06-27T16:27:51,127 creating build/bdist.linux-armv7l/wheel/tests/unit/unit 2023-06-27T16:27:51,129 copying build/lib/tests/unit/unit/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit/unit 2023-06-27T16:27:51,132 copying build/lib/tests/unit/f1.bed -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:51,136 copying build/lib/tests/unit/f2.bed -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:51,139 copying build/lib/tests/unit/test_genomicfeatures.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:51,143 copying build/lib/tests/unit/test_pickle.py -> build/bdist.linux-armv7l/wheel/tests/unit 2023-06-27T16:27:51,146 running install_egg_info 2023-06-27T16:27:51,162 Copying pyranges.egg-info to build/bdist.linux-armv7l/wheel/pyranges-0.0.128-py3.7.egg-info 2023-06-27T16:27:51,185 running install_scripts 2023-06-27T16:27:51,224 creating build/bdist.linux-armv7l/wheel/pyranges-0.0.128.dist-info/WHEEL 2023-06-27T16:27:51,229 creating '/tmp/pip-wheel-v1fhtale/.tmp-9_s4qvww/pyranges-0.0.128-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-27T16:27:51,236 adding 'book/_bookdown.yml' 2023-06-27T16:27:51,240 adding 'book/build_book.yml' 2023-06-27T16:27:51,242 adding 'book/colocalization.Rmd' 2023-06-27T16:27:51,245 adding 'book/compile.R' 2023-06-27T16:27:51,247 adding 'book/compile2.R' 2023-06-27T16:27:51,249 adding 'book/concat.Rmd' 2023-06-27T16:27:51,252 adding 'book/count_overlaps.Rmd' 2023-06-27T16:27:51,254 adding 'book/coverage.Rmd' 2023-06-27T16:27:51,257 adding 'book/creating.Rmd' 2023-06-27T16:27:51,260 adding 'book/custom_methods.Rmd' 2023-06-27T16:27:51,263 adding 'book/databases.Rmd' 2023-06-27T16:27:51,265 adding 'book/exons.py' 2023-06-27T16:27:51,268 adding 'book/fisher_exact.Rmd' 2023-06-27T16:27:51,270 adding 'book/genomicfeatures.Rmd' 2023-06-27T16:27:51,273 adding 'book/index.Rmd' 2023-06-27T16:27:51,275 adding 'book/insert.Rmd' 2023-06-27T16:27:51,278 adding 'book/intersection.Rmd' 2023-06-27T16:27:51,281 adding 'book/iterate.Rmd' 2023-06-27T16:27:51,284 adding 'book/join.Rmd' 2023-06-27T16:27:51,286 adding 'book/knearest.Rmd' 2023-06-27T16:27:51,289 adding 'book/make_book.py' 2023-06-27T16:27:51,292 adding 'book/manipulation.Rmd' 2023-06-27T16:27:51,294 adding 'book/mcc.Rmd' 2023-06-27T16:27:51,297 adding 'book/multithreading.Rmd' 2023-06-27T16:27:51,300 adding 'book/nearest.Rmd' 2023-06-27T16:27:51,302 adding 'book/piping.Rmd' 2023-06-27T16:27:51,305 adding 'book/printing.Rmd' 2023-06-27T16:27:51,307 adding 'book/pyranges.css' 2023-06-27T16:27:51,309 adding 'book/reldist.Rmd' 2023-06-27T16:27:51,312 adding 'book/rowbased_statistics.Rmd' 2023-06-27T16:27:51,315 adding 'book/runlength_dict.Rmd' 2023-06-27T16:27:51,317 adding 'book/runlengths.Rmd' 2023-06-27T16:27:51,320 adding 'book/simes.Rmd' 2023-06-27T16:27:51,322 adding 'book/single_range_methods.Rmd' 2023-06-27T16:27:51,325 adding 'book/sort.Rmd' 2023-06-27T16:27:51,328 adding 'book/subset.Rmd' 2023-06-27T16:27:51,330 adding 'book/subsetting_pyrles.Rmd' 2023-06-27T16:27:51,333 adding 'book/subsetting_rles.Rmd' 2023-06-27T16:27:51,335 adding 'book/subtract.Rmd' 2023-06-27T16:27:51,338 adding 'book/summary.Rmd' 2023-06-27T16:27:51,346 adding 'book/tutorial.Rmd' 2023-06-27T16:27:51,349 adding 'book/writing.Rmd' 2023-06-27T16:27:51,353 adding 'docs/Makefile' 2023-06-27T16:27:51,356 adding 'docs/conf.py' 2023-06-27T16:27:51,359 adding 'docs/index.html' 2023-06-27T16:27:51,361 adding 'docs/index.rst' 2023-06-27T16:27:51,364 adding 'docs/make.bat' 2023-06-27T16:27:51,366 adding 'docs/requirements.txt' 2023-06-27T16:27:51,370 adding 'graphs/hypothesis-tested-brightgreen.svg' 2023-06-27T16:27:51,444 adding 'graphs/main_paper_annotation_binary.png' 2023-06-27T16:27:51,514 adding 'graphs/memory.png' 2023-06-27T16:27:51,575 adding 'graphs/time.png' 2023-06-27T16:27:51,586 adding 'pyranges/__init__.py' 2023-06-27T16:27:51,591 adding 'pyranges/data.py' 2023-06-27T16:27:51,594 adding 'pyranges/docs' 2023-06-27T16:27:51,601 adding 'pyranges/genomicfeatures.py' 2023-06-27T16:27:51,605 adding 'pyranges/get_fasta.py' 2023-06-27T16:27:51,608 adding 'pyranges/helpers.py' 2023-06-27T16:27:51,611 adding 'pyranges/multioverlap.py' 2023-06-27T16:27:51,616 adding 'pyranges/multithreaded.py' 2023-06-27T16:27:51,620 adding 'pyranges/out.py' 2023-06-27T16:27:51,667 adding 'pyranges/pyranges_main.py' 2023-06-27T16:27:51,678 adding 'pyranges/readers.py' 2023-06-27T16:27:51,686 adding 'pyranges/statistics.py' 2023-06-27T16:27:51,689 adding 'pyranges/stats.py' 2023-06-27T16:27:51,692 adding 'pyranges/subset.py' 2023-06-27T16:27:51,696 adding 'pyranges/tostring2.py' 2023-06-27T16:27:51,700 adding 'pyranges/example_data/aorta.bed' 2023-06-27T16:27:51,703 adding 'pyranges/example_data/aorta2.bed' 2023-06-27T16:27:51,706 adding 'pyranges/example_data/bw.bw' 2023-06-27T16:27:51,838 adding 'pyranges/example_data/chipseq.bed' 2023-06-27T16:27:51,978 adding 'pyranges/example_data/chipseq_background.bed' 2023-06-27T16:27:51,986 adding 'pyranges/example_data/chromsizes.bed' 2023-06-27T16:27:52,009 adding 'pyranges/example_data/control.bam' 2023-06-27T16:27:52,186 adding 'pyranges/example_data/control.bam.bai' 2023-06-27T16:27:52,232 adding 'pyranges/example_data/cpg.bed' 2023-06-27T16:27:52,238 adding 'pyranges/example_data/ensembl.gtf' 2023-06-27T16:27:52,249 adding 'pyranges/example_data/ensembl_human.gtf.gz' 2023-06-27T16:27:52,272 adding 'pyranges/example_data/exons.bed' 2023-06-27T16:27:52,276 adding 'pyranges/example_data/f1.bed' 2023-06-27T16:27:52,278 adding 'pyranges/example_data/f2.bed' 2023-06-27T16:27:52,300 adding 'pyranges/example_data/gencode_human.gtf.gz' 2023-06-27T16:27:52,334 adding 'pyranges/example_data/lamina.bed' 2023-06-27T16:27:52,352 adding 'pyranges/example_data/ucsc_human.bed.gz' 2023-06-27T16:27:52,357 adding 'pyranges/methods/__init__.py' 2023-06-27T16:27:52,360 adding 'pyranges/methods/attr.py' 2023-06-27T16:27:52,363 adding 'pyranges/methods/boundaries.py' 2023-06-27T16:27:52,365 adding 'pyranges/methods/call.py' 2023-06-27T16:27:52,368 adding 'pyranges/methods/cluster.py' 2023-06-27T16:27:52,370 adding 'pyranges/methods/concat.py' 2023-06-27T16:27:52,373 adding 'pyranges/methods/coverage.py' 2023-06-27T16:27:52,376 adding 'pyranges/methods/drop.py' 2023-06-27T16:27:52,379 adding 'pyranges/methods/drop_duplicates.py' 2023-06-27T16:27:52,381 adding 'pyranges/methods/getitem.py' 2023-06-27T16:27:52,384 adding 'pyranges/methods/init.py' 2023-06-27T16:27:52,387 adding 'pyranges/methods/insert.py' 2023-06-27T16:27:52,390 adding 'pyranges/methods/intersection.py' 2023-06-27T16:27:52,393 adding 'pyranges/methods/itergrs.py' 2023-06-27T16:27:52,396 adding 'pyranges/methods/join.py' 2023-06-27T16:27:52,399 adding 'pyranges/methods/k_nearest.py' 2023-06-27T16:27:52,401 adding 'pyranges/methods/max_disjoint.py' 2023-06-27T16:27:52,404 adding 'pyranges/methods/merge.py' 2023-06-27T16:27:52,407 adding 'pyranges/methods/nearest.py' 2023-06-27T16:27:52,410 adding 'pyranges/methods/new_position.py' 2023-06-27T16:27:52,412 adding 'pyranges/methods/sort.py' 2023-06-27T16:27:52,415 adding 'pyranges/methods/spliced_subsequence.py' 2023-06-27T16:27:52,418 adding 'pyranges/methods/split.py' 2023-06-27T16:27:52,420 adding 'pyranges/methods/statistics.py' 2023-06-27T16:27:52,423 adding 'pyranges/methods/subsequence.py' 2023-06-27T16:27:52,426 adding 'pyranges/methods/subtraction.py' 2023-06-27T16:27:52,429 adding 'pyranges/methods/summary.py' 2023-06-27T16:27:52,431 adding 'pyranges/methods/to_rle.py' 2023-06-27T16:27:52,434 adding 'pyranges/methods/windows.py' 2023-06-27T16:27:52,441 adding 'tests/.fuse_hidden0000017200000002' 2023-06-27T16:27:52,444 adding 'tests/helpers.py' 2023-06-27T16:27:52,447 adding 'tests/hi' 2023-06-27T16:27:52,451 adding 'tests/property_based/__init__.py' 2023-06-27T16:27:52,454 adding 'tests/property_based/hypothesis_helper.py' 2023-06-27T16:27:52,459 adding 'tests/property_based/test_binary.py' 2023-06-27T16:27:52,463 adding 'tests/property_based/test_do_not_error.py' 2023-06-27T16:27:52,466 adding 'tests/property_based/test_unary.py' 2023-06-27T16:27:52,471 adding 'tests/unit/__init__.py' 2023-06-27T16:27:52,473 adding 'tests/unit/chip_10.bed' 2023-06-27T16:27:52,476 adding 'tests/unit/conftest.py' 2023-06-27T16:27:52,478 adding 'tests/unit/f1.bed' 2023-06-27T16:27:52,481 adding 'tests/unit/f2.bed' 2023-06-27T16:27:52,484 adding 'tests/unit/hi' 2023-06-27T16:27:52,487 adding 'tests/unit/k_nearest.py' 2023-06-27T16:27:52,489 adding 'tests/unit/statistics.py' 2023-06-27T16:27:52,492 adding 'tests/unit/test_change_chromosome_custom.py' 2023-06-27T16:27:52,494 adding 'tests/unit/test_concat.py' 2023-06-27T16:27:52,497 adding 'tests/unit/test_count_overlaps.py' 2023-06-27T16:27:52,500 adding 'tests/unit/test_genomicfeatures.py' 2023-06-27T16:27:52,502 adding 'tests/unit/test_getset_attr.py' 2023-06-27T16:27:52,505 adding 'tests/unit/test_guessers.py' 2023-06-27T16:27:52,507 adding 'tests/unit/test_io.py' 2023-06-27T16:27:52,510 adding 'tests/unit/test_pickle.py' 2023-06-27T16:27:52,512 adding 'tests/unit/test_stranded.py' 2023-06-27T16:27:52,516 adding 'tests/unit/data/test_data.py' 2023-06-27T16:27:52,519 adding 'tests/unit/df_dict_mismatch/test_mismatch.py' 2023-06-27T16:27:52,522 adding 'tests/unit/getitem/test_getitem.py' 2023-06-27T16:27:52,526 adding 'tests/unit/join/test_join.py' 2023-06-27T16:27:52,529 adding 'tests/unit/new_position/test_new_position.py' 2023-06-27T16:27:52,533 adding 'tests/unit/out/test_out.py' 2023-06-27T16:27:52,536 adding 'tests/unit/slack/test_slack.py' 2023-06-27T16:27:52,543 adding 'tests/unit/test_data/ensembl.gtf' 2023-06-27T16:27:52,549 adding 'tests/unit/test_data/gencode.gff3' 2023-06-27T16:27:52,573 adding 'tests/unit/test_data/test_sorted.bam' 2023-06-27T16:27:52,755 adding 'tests/unit/test_data/test_sorted.bam.bai' 2023-06-27T16:27:52,793 adding 'tests/unit/unit/__init__.py' 2023-06-27T16:27:52,796 adding 'tests/unit/unstrand/test_unstrand.py' 2023-06-27T16:27:52,800 adding 'tests/unit/windows/test_windows.py' 2023-06-27T16:27:52,802 adding 'pyranges-0.0.128.dist-info/LICENSE' 2023-06-27T16:27:52,807 adding 'pyranges-0.0.128.dist-info/METADATA' 2023-06-27T16:27:52,809 adding 'pyranges-0.0.128.dist-info/WHEEL' 2023-06-27T16:27:52,811 adding 'pyranges-0.0.128.dist-info/top_level.txt' 2023-06-27T16:27:52,817 adding 'pyranges-0.0.128.dist-info/RECORD' 2023-06-27T16:27:52,870 removing build/bdist.linux-armv7l/wheel 2023-06-27T16:27:53,188 Building wheel for pyranges (pyproject.toml): finished with status 'done' 2023-06-27T16:27:53,287 Created wheel for pyranges: filename=pyranges-0.0.128-py3-none-any.whl size=1467401 sha256=76eab334fe0df20c945192829a1cbe58b915d225e4c5a66370f23611104bf42b 2023-06-27T16:27:53,290 Stored in directory: /tmp/pip-ephem-wheel-cache-1jut7p74/wheels/a6/06/7b/d4c930d82259bc5755aa43c12c5eada498e437913d78040349 2023-06-27T16:27:53,332 Successfully built pyranges 2023-06-27T16:27:53,452 Removed build tracker: '/tmp/pip-build-tracker-5_f5l6et'