2023-06-28T00:11:30,770 Created temporary directory: /tmp/pip-build-tracker-048hlj0x 2023-06-28T00:11:30,773 Initialized build tracking at /tmp/pip-build-tracker-048hlj0x 2023-06-28T00:11:30,774 Created build tracker: /tmp/pip-build-tracker-048hlj0x 2023-06-28T00:11:30,774 Entered build tracker: /tmp/pip-build-tracker-048hlj0x 2023-06-28T00:11:30,775 Created temporary directory: /tmp/pip-wheel-byjxpcqt 2023-06-28T00:11:30,784 Created temporary directory: /tmp/pip-ephem-wheel-cache-u7o4u9es 2023-06-28T00:11:30,835 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-28T00:11:30,844 2 location(s) to search for versions of pdm-utils: 2023-06-28T00:11:30,844 * https://pypi.org/simple/pdm-utils/ 2023-06-28T00:11:30,844 * https://www.piwheels.org/simple/pdm-utils/ 2023-06-28T00:11:30,845 Fetching project page and analyzing links: https://pypi.org/simple/pdm-utils/ 2023-06-28T00:11:30,846 Getting page https://pypi.org/simple/pdm-utils/ 2023-06-28T00:11:30,850 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https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.11-py3-none-any.whl#sha256=0ba3823b42f3c90424145bf23f23ca510649624ede857a0835b89193f845c35f (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-28T00:11:31,609 Skipping link: No binaries permitted for pdm-utils: https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.10-py3-none-any.whl#sha256=da3b3d1aa1211875d29197bf7fc9009405c1b58a6300b22e99ea0cfdd5df11e9 (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-28T00:11:31,610 Skipping link: No binaries permitted for pdm-utils: https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.6-py3-none-any.whl#sha256=acbb8f44f33136bdef3034415a2dbce4ae8202a76b8fa1ffbd6f97f3f1195d00 (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-28T00:11:31,610 Skipping link: No binaries permitted for pdm-utils: https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.5-py3-none-any.whl#sha256=9f63db49a8a1ec14c179e96418b2b1b9fe232c5b883952b71e6640584c9feaac (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-28T00:11:31,611 Skipping link: not a file: https://www.piwheels.org/simple/pdm-utils/ 2023-06-28T00:11:31,611 Skipping link: not a file: https://pypi.org/simple/pdm-utils/ 2023-06-28T00:11:31,674 Given no hashes to check 1 links for project 'pdm-utils': discarding no candidates 2023-06-28T00:11:31,706 Collecting pdm-utils==1.1.1 2023-06-28T00:11:31,711 Created temporary directory: /tmp/pip-unpack-xhc4lcn3 2023-06-28T00:11:31,913 Downloading pdm_utils-1.1.1.tar.gz (250 kB) 2023-06-28T00:11:32,505 Added pdm-utils==1.1.1 from https://files.pythonhosted.org/packages/69/0e/4e493ac5350a9e6cdde77ba8e7afea576fae5394fef73771a7e1ecef30df/pdm_utils-1.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-048hlj0x' 2023-06-28T00:11:32,513 Created temporary directory: /tmp/pip-build-env-yw9z5wdl 2023-06-28T00:11:32,533 Installing build dependencies: started 2023-06-28T00:11:32,535 Running command pip subprocess to install build dependencies 2023-06-28T00:11:35,262 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-06-28T00:11:36,030 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-28T00:11:39,966 Collecting setuptools 2023-06-28T00:11:40,157 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-06-28T00:11:40,784 Collecting wheel 2023-06-28T00:11:40,822 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-06-28T00:11:45,787 Installing collected packages: wheel, setuptools 2023-06-28T00:11:46,246 Creating /tmp/pip-build-env-yw9z5wdl/overlay/bin 2023-06-28T00:11:46,250 changing mode of /tmp/pip-build-env-yw9z5wdl/overlay/bin/wheel to 755 2023-06-28T00:11:50,544 Successfully installed setuptools-68.0.0 wheel-0.40.0 2023-06-28T00:11:50,995 Installing build dependencies: finished with status 'done' 2023-06-28T00:11:51,006 Getting requirements to build wheel: started 2023-06-28T00:11:51,009 Running command Getting requirements to build wheel 2023-06-28T00:11:52,516 running egg_info 2023-06-28T00:11:52,526 writing src/pdm_utils.egg-info/PKG-INFO 2023-06-28T00:11:52,531 writing dependency_links to src/pdm_utils.egg-info/dependency_links.txt 2023-06-28T00:11:52,535 writing entry points to src/pdm_utils.egg-info/entry_points.txt 2023-06-28T00:11:52,538 writing requirements to src/pdm_utils.egg-info/requires.txt 2023-06-28T00:11:52,541 writing top-level names to src/pdm_utils.egg-info/top_level.txt 2023-06-28T00:11:52,600 reading manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-28T00:11:52,609 adding license file 'LICENSE' 2023-06-28T00:11:52,624 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-28T00:11:52,740 Getting requirements to build wheel: finished with status 'done' 2023-06-28T00:11:52,761 Created temporary directory: /tmp/pip-modern-metadata-hci3s6m3 2023-06-28T00:11:52,767 Preparing metadata (pyproject.toml): started 2023-06-28T00:11:52,770 Running command Preparing metadata (pyproject.toml) 2023-06-28T00:11:54,069 running dist_info 2023-06-28T00:11:54,107 creating /tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info 2023-06-28T00:11:54,116 writing /tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info/PKG-INFO 2023-06-28T00:11:54,120 writing dependency_links to /tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info/dependency_links.txt 2023-06-28T00:11:54,124 writing entry points to /tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info/entry_points.txt 2023-06-28T00:11:54,127 writing requirements to /tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info/requires.txt 2023-06-28T00:11:54,129 writing top-level names to /tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info/top_level.txt 2023-06-28T00:11:54,132 writing manifest file '/tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info/SOURCES.txt' 2023-06-28T00:11:54,186 reading manifest file '/tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info/SOURCES.txt' 2023-06-28T00:11:54,191 adding license file 'LICENSE' 2023-06-28T00:11:54,202 writing manifest file '/tmp/pip-modern-metadata-hci3s6m3/pdm_utils.egg-info/SOURCES.txt' 2023-06-28T00:11:54,204 creating '/tmp/pip-modern-metadata-hci3s6m3/pdm_utils-1.1.1.dist-info' 2023-06-28T00:11:54,532 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-28T00:11:54,548 Source in /tmp/pip-wheel-byjxpcqt/pdm-utils_6c759f431f894180ba0d1ad8a9d3a42c has version 1.1.1, which satisfies requirement pdm-utils==1.1.1 from https://files.pythonhosted.org/packages/69/0e/4e493ac5350a9e6cdde77ba8e7afea576fae5394fef73771a7e1ecef30df/pdm_utils-1.1.1.tar.gz 2023-06-28T00:11:54,550 Removed pdm-utils==1.1.1 from https://files.pythonhosted.org/packages/69/0e/4e493ac5350a9e6cdde77ba8e7afea576fae5394fef73771a7e1ecef30df/pdm_utils-1.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-048hlj0x' 2023-06-28T00:11:54,565 Created temporary directory: /tmp/pip-unpack-a76b2x6d 2023-06-28T00:11:54,566 Building wheels for collected packages: pdm-utils 2023-06-28T00:11:54,576 Created temporary directory: /tmp/pip-wheel-vfxud3c0 2023-06-28T00:11:54,576 Destination directory: /tmp/pip-wheel-vfxud3c0 2023-06-28T00:11:54,581 Building wheel for pdm-utils (pyproject.toml): started 2023-06-28T00:11:54,583 Running command Building wheel for pdm-utils (pyproject.toml) 2023-06-28T00:11:55,979 running bdist_wheel 2023-06-28T00:11:56,054 running build 2023-06-28T00:11:56,054 running build_py 2023-06-28T00:11:56,071 creating build 2023-06-28T00:11:56,072 creating build/lib 2023-06-28T00:11:56,074 creating build/lib/pdm_utils 2023-06-28T00:11:56,076 copying src/pdm_utils/__main__.py -> build/lib/pdm_utils 2023-06-28T00:11:56,080 copying src/pdm_utils/run.py -> build/lib/pdm_utils 2023-06-28T00:11:56,084 copying src/pdm_utils/__init__.py -> build/lib/pdm_utils 2023-06-28T00:11:56,089 creating build/lib/pdm_utils/constants 2023-06-28T00:11:56,091 copying src/pdm_utils/constants/db_schema_0.py -> build/lib/pdm_utils/constants 2023-06-28T00:11:56,096 copying src/pdm_utils/constants/constants.py -> build/lib/pdm_utils/constants 2023-06-28T00:11:56,100 copying src/pdm_utils/constants/eval_descriptions.py -> build/lib/pdm_utils/constants 2023-06-28T00:11:56,104 copying src/pdm_utils/constants/schema_conversions.py -> build/lib/pdm_utils/constants 2023-06-28T00:11:56,110 copying src/pdm_utils/constants/__init__.py -> build/lib/pdm_utils/constants 2023-06-28T00:11:56,117 creating build/lib/pdm_utils/functions 2023-06-28T00:11:56,119 copying src/pdm_utils/functions/configfile.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,123 copying src/pdm_utils/functions/fileio.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,127 copying src/pdm_utils/functions/mysqldb.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,132 copying src/pdm_utils/functions/flat_files.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,137 copying src/pdm_utils/functions/pham_alignment.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,141 copying src/pdm_utils/functions/pipeline_shells.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,146 copying src/pdm_utils/functions/url_basic.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,150 copying src/pdm_utils/functions/subprocess.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,154 copying src/pdm_utils/functions/tickets.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,158 copying src/pdm_utils/functions/ncbi.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,162 copying src/pdm_utils/functions/basic.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,170 copying src/pdm_utils/functions/pipelines_basic.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,174 copying src/pdm_utils/functions/annotation.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,178 copying src/pdm_utils/functions/rpsblast.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,182 copying src/pdm_utils/functions/server.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,185 copying src/pdm_utils/functions/phagesdb.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,190 copying src/pdm_utils/functions/parsing.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,194 copying src/pdm_utils/functions/mysqldb_basic.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,199 copying src/pdm_utils/functions/querying.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,204 copying src/pdm_utils/functions/eval_modes.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,208 copying src/pdm_utils/functions/cartography.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,212 copying src/pdm_utils/functions/multithread.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,216 copying src/pdm_utils/functions/__init__.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,218 copying src/pdm_utils/functions/deeptmhmm.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,222 copying src/pdm_utils/functions/fasta.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,225 copying src/pdm_utils/functions/multiprocess.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,229 copying src/pdm_utils/functions/phameration.py -> build/lib/pdm_utils/functions 2023-06-28T00:11:56,236 creating build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,237 copying src/pdm_utils/pipelines/compare_db.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,244 copying src/pdm_utils/pipelines/convert_db.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,248 copying src/pdm_utils/pipelines/get_gb_records.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,253 copying src/pdm_utils/pipelines/find_domains.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,257 copying src/pdm_utils/pipelines/push_db.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,261 copying src/pdm_utils/pipelines/pham_finder.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,266 copying src/pdm_utils/pipelines/cluster_db.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,271 copying src/pdm_utils/pipelines/import_genome.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,279 copying src/pdm_utils/pipelines/freeze_db.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,284 copying src/pdm_utils/pipelines/find_transmembrane.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,288 copying src/pdm_utils/pipelines/update_field.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,292 copying src/pdm_utils/pipelines/revise.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,298 copying src/pdm_utils/pipelines/get_data.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,307 copying src/pdm_utils/pipelines/export_db.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,313 copying src/pdm_utils/pipelines/pham_review.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,318 copying src/pdm_utils/pipelines/phamerate.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,323 copying src/pdm_utils/pipelines/__init__.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,325 copying src/pdm_utils/pipelines/find_membrane.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,329 copying src/pdm_utils/pipelines/get_db.py -> build/lib/pdm_utils/pipelines 2023-06-28T00:11:56,336 creating build/lib/pdm_utils/classes 2023-06-28T00:11:56,338 copying src/pdm_utils/classes/fileio.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,342 copying src/pdm_utils/classes/trnascansehandler.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,346 copying src/pdm_utils/classes/ticket.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,350 copying src/pdm_utils/classes/aragornhandler.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,354 copying src/pdm_utils/classes/progress.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,357 copying src/pdm_utils/classes/cdspair.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,360 copying src/pdm_utils/classes/alchemyhandler.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,365 copying src/pdm_utils/classes/genomepair.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,369 copying src/pdm_utils/classes/trna.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,376 copying src/pdm_utils/classes/genometriad.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,381 copying src/pdm_utils/classes/evaluation.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,384 copying src/pdm_utils/classes/dbcomparesummary.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,388 copying src/pdm_utils/classes/genome.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,395 copying src/pdm_utils/classes/bundle.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,398 copying src/pdm_utils/classes/randomfieldupdatehandler.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,403 copying src/pdm_utils/classes/tmrna.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,409 copying src/pdm_utils/classes/error.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,412 copying src/pdm_utils/classes/source.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,416 copying src/pdm_utils/classes/filter.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,421 copying src/pdm_utils/classes/__init__.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,424 copying src/pdm_utils/classes/cds.py -> build/lib/pdm_utils/classes 2023-06-28T00:11:56,479 installing to build/bdist.linux-armv7l/wheel 2023-06-28T00:11:56,480 running install 2023-06-28T00:11:56,542 running install_lib 2023-06-28T00:11:56,557 creating build/bdist.linux-armv7l 2023-06-28T00:11:56,558 creating build/bdist.linux-armv7l/wheel 2023-06-28T00:11:56,562 creating build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-28T00:11:56,565 creating build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-28T00:11:56,567 copying build/lib/pdm_utils/constants/db_schema_0.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-28T00:11:56,572 copying build/lib/pdm_utils/constants/constants.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-28T00:11:56,576 copying build/lib/pdm_utils/constants/eval_descriptions.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-28T00:11:56,581 copying build/lib/pdm_utils/constants/schema_conversions.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-28T00:11:56,587 copying build/lib/pdm_utils/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-28T00:11:56,592 creating build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,593 copying build/lib/pdm_utils/functions/configfile.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,597 copying build/lib/pdm_utils/functions/fileio.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,602 copying build/lib/pdm_utils/functions/mysqldb.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,607 copying build/lib/pdm_utils/functions/flat_files.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,613 copying build/lib/pdm_utils/functions/pham_alignment.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,617 copying build/lib/pdm_utils/functions/pipeline_shells.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,622 copying build/lib/pdm_utils/functions/url_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,626 copying build/lib/pdm_utils/functions/subprocess.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,630 copying build/lib/pdm_utils/functions/tickets.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,635 copying build/lib/pdm_utils/functions/ncbi.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,639 copying build/lib/pdm_utils/functions/basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,646 copying build/lib/pdm_utils/functions/pipelines_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,650 copying build/lib/pdm_utils/functions/annotation.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,654 copying build/lib/pdm_utils/functions/rpsblast.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,659 copying build/lib/pdm_utils/functions/server.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,662 copying build/lib/pdm_utils/functions/phagesdb.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,667 copying build/lib/pdm_utils/functions/parsing.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,672 copying build/lib/pdm_utils/functions/mysqldb_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,676 copying build/lib/pdm_utils/functions/querying.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,682 copying build/lib/pdm_utils/functions/eval_modes.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,686 copying build/lib/pdm_utils/functions/cartography.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,689 copying build/lib/pdm_utils/functions/multithread.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,694 copying build/lib/pdm_utils/functions/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,696 copying build/lib/pdm_utils/functions/deeptmhmm.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,700 copying build/lib/pdm_utils/functions/fasta.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,704 copying build/lib/pdm_utils/functions/multiprocess.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,707 copying build/lib/pdm_utils/functions/phameration.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-28T00:11:56,712 copying build/lib/pdm_utils/__main__.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-28T00:11:56,715 copying build/lib/pdm_utils/run.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-28T00:11:56,719 copying build/lib/pdm_utils/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-28T00:11:56,724 creating build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,725 copying build/lib/pdm_utils/pipelines/compare_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,733 copying build/lib/pdm_utils/pipelines/convert_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,737 copying build/lib/pdm_utils/pipelines/get_gb_records.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,742 copying build/lib/pdm_utils/pipelines/find_domains.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,746 copying build/lib/pdm_utils/pipelines/push_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,751 copying build/lib/pdm_utils/pipelines/pham_finder.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,755 copying build/lib/pdm_utils/pipelines/cluster_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,761 copying build/lib/pdm_utils/pipelines/import_genome.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,770 copying build/lib/pdm_utils/pipelines/freeze_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,776 copying build/lib/pdm_utils/pipelines/find_transmembrane.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,781 copying build/lib/pdm_utils/pipelines/update_field.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,785 copying build/lib/pdm_utils/pipelines/revise.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,791 copying build/lib/pdm_utils/pipelines/get_data.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,797 copying build/lib/pdm_utils/pipelines/export_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,802 copying build/lib/pdm_utils/pipelines/pham_review.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,808 copying build/lib/pdm_utils/pipelines/phamerate.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,813 copying build/lib/pdm_utils/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,816 copying build/lib/pdm_utils/pipelines/find_membrane.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,821 copying build/lib/pdm_utils/pipelines/get_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-28T00:11:56,827 creating build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,829 copying build/lib/pdm_utils/classes/fileio.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,833 copying build/lib/pdm_utils/classes/trnascansehandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,837 copying build/lib/pdm_utils/classes/ticket.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,842 copying build/lib/pdm_utils/classes/aragornhandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,847 copying build/lib/pdm_utils/classes/progress.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,850 copying build/lib/pdm_utils/classes/cdspair.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,854 copying build/lib/pdm_utils/classes/alchemyhandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,859 copying build/lib/pdm_utils/classes/genomepair.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,864 copying build/lib/pdm_utils/classes/trna.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,872 copying build/lib/pdm_utils/classes/genometriad.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,877 copying build/lib/pdm_utils/classes/evaluation.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,881 copying build/lib/pdm_utils/classes/dbcomparesummary.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,886 copying build/lib/pdm_utils/classes/genome.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,893 copying build/lib/pdm_utils/classes/bundle.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,897 copying build/lib/pdm_utils/classes/randomfieldupdatehandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,901 copying build/lib/pdm_utils/classes/tmrna.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,907 copying build/lib/pdm_utils/classes/error.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,911 copying build/lib/pdm_utils/classes/source.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,915 copying build/lib/pdm_utils/classes/filter.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,920 copying build/lib/pdm_utils/classes/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,923 copying build/lib/pdm_utils/classes/cds.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-28T00:11:56,929 running install_egg_info 2023-06-28T00:11:56,979 running egg_info 2023-06-28T00:11:56,988 writing src/pdm_utils.egg-info/PKG-INFO 2023-06-28T00:11:56,992 writing dependency_links to src/pdm_utils.egg-info/dependency_links.txt 2023-06-28T00:11:56,995 writing entry points to src/pdm_utils.egg-info/entry_points.txt 2023-06-28T00:11:56,998 writing requirements to src/pdm_utils.egg-info/requires.txt 2023-06-28T00:11:57,000 writing top-level names to src/pdm_utils.egg-info/top_level.txt 2023-06-28T00:11:57,031 reading manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-28T00:11:57,040 adding license file 'LICENSE' 2023-06-28T00:11:57,055 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-28T00:11:57,058 Copying src/pdm_utils.egg-info to build/bdist.linux-armv7l/wheel/pdm_utils-1.1.1-py3.7.egg-info 2023-06-28T00:11:57,081 running install_scripts 2023-06-28T00:11:57,130 creating build/bdist.linux-armv7l/wheel/pdm_utils-1.1.1.dist-info/WHEEL 2023-06-28T00:11:57,136 creating '/tmp/pip-wheel-vfxud3c0/.tmp-rbz8k3vv/pdm_utils-1.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-28T00:11:57,141 adding 'pdm_utils/__init__.py' 2023-06-28T00:11:57,144 adding 'pdm_utils/__main__.py' 2023-06-28T00:11:57,147 adding 'pdm_utils/run.py' 2023-06-28T00:11:57,151 adding 'pdm_utils/classes/__init__.py' 2023-06-28T00:11:57,157 adding 'pdm_utils/classes/alchemyhandler.py' 2023-06-28T00:11:57,161 adding 'pdm_utils/classes/aragornhandler.py' 2023-06-28T00:11:57,165 adding 'pdm_utils/classes/bundle.py' 2023-06-28T00:11:57,175 adding 'pdm_utils/classes/cds.py' 2023-06-28T00:11:57,179 adding 'pdm_utils/classes/cdspair.py' 2023-06-28T00:11:57,183 adding 'pdm_utils/classes/dbcomparesummary.py' 2023-06-28T00:11:57,185 adding 'pdm_utils/classes/error.py' 2023-06-28T00:11:57,188 adding 'pdm_utils/classes/evaluation.py' 2023-06-28T00:11:57,192 adding 'pdm_utils/classes/fileio.py' 2023-06-28T00:11:57,198 adding 'pdm_utils/classes/filter.py' 2023-06-28T00:11:57,208 adding 'pdm_utils/classes/genome.py' 2023-06-28T00:11:57,213 adding 'pdm_utils/classes/genomepair.py' 2023-06-28T00:11:57,218 adding 'pdm_utils/classes/genometriad.py' 2023-06-28T00:11:57,220 adding 'pdm_utils/classes/progress.py' 2023-06-28T00:11:57,224 adding 'pdm_utils/classes/randomfieldupdatehandler.py' 2023-06-28T00:11:57,227 adding 'pdm_utils/classes/source.py' 2023-06-28T00:11:57,231 adding 'pdm_utils/classes/ticket.py' 2023-06-28T00:11:57,240 adding 'pdm_utils/classes/tmrna.py' 2023-06-28T00:11:57,256 adding 'pdm_utils/classes/trna.py' 2023-06-28T00:11:57,260 adding 'pdm_utils/classes/trnascansehandler.py' 2023-06-28T00:11:57,264 adding 'pdm_utils/constants/__init__.py' 2023-06-28T00:11:57,267 adding 'pdm_utils/constants/constants.py' 2023-06-28T00:11:57,271 adding 'pdm_utils/constants/db_schema_0.py' 2023-06-28T00:11:57,275 adding 'pdm_utils/constants/eval_descriptions.py' 2023-06-28T00:11:57,282 adding 'pdm_utils/constants/schema_conversions.py' 2023-06-28T00:11:57,288 adding 'pdm_utils/functions/__init__.py' 2023-06-28T00:11:57,291 adding 'pdm_utils/functions/annotation.py' 2023-06-28T00:11:57,305 adding 'pdm_utils/functions/basic.py' 2023-06-28T00:11:57,309 adding 'pdm_utils/functions/cartography.py' 2023-06-28T00:11:57,312 adding 'pdm_utils/functions/configfile.py' 2023-06-28T00:11:57,315 adding 'pdm_utils/functions/deeptmhmm.py' 2023-06-28T00:11:57,318 adding 'pdm_utils/functions/eval_modes.py' 2023-06-28T00:11:57,321 adding 'pdm_utils/functions/fasta.py' 2023-06-28T00:11:57,325 adding 'pdm_utils/functions/fileio.py' 2023-06-28T00:11:57,334 adding 'pdm_utils/functions/flat_files.py' 2023-06-28T00:11:57,338 adding 'pdm_utils/functions/multiprocess.py' 2023-06-28T00:11:57,341 adding 'pdm_utils/functions/multithread.py' 2023-06-28T00:11:57,349 adding 'pdm_utils/functions/mysqldb.py' 2023-06-28T00:11:57,354 adding 'pdm_utils/functions/mysqldb_basic.py' 2023-06-28T00:11:57,358 adding 'pdm_utils/functions/ncbi.py' 2023-06-28T00:11:57,362 adding 'pdm_utils/functions/parsing.py' 2023-06-28T00:11:57,367 adding 'pdm_utils/functions/phagesdb.py' 2023-06-28T00:11:57,371 adding 'pdm_utils/functions/pham_alignment.py' 2023-06-28T00:11:57,375 adding 'pdm_utils/functions/phameration.py' 2023-06-28T00:11:57,379 adding 'pdm_utils/functions/pipeline_shells.py' 2023-06-28T00:11:57,383 adding 'pdm_utils/functions/pipelines_basic.py' 2023-06-28T00:11:57,392 adding 'pdm_utils/functions/querying.py' 2023-06-28T00:11:57,397 adding 'pdm_utils/functions/rpsblast.py' 2023-06-28T00:11:57,400 adding 'pdm_utils/functions/server.py' 2023-06-28T00:11:57,402 adding 'pdm_utils/functions/subprocess.py' 2023-06-28T00:11:57,407 adding 'pdm_utils/functions/tickets.py' 2023-06-28T00:11:57,412 adding 'pdm_utils/functions/url_basic.py' 2023-06-28T00:11:57,416 adding 'pdm_utils/pipelines/__init__.py' 2023-06-28T00:11:57,424 adding 'pdm_utils/pipelines/cluster_db.py' 2023-06-28T00:11:57,440 adding 'pdm_utils/pipelines/compare_db.py' 2023-06-28T00:11:57,445 adding 'pdm_utils/pipelines/convert_db.py' 2023-06-28T00:11:57,454 adding 'pdm_utils/pipelines/export_db.py' 2023-06-28T00:11:57,460 adding 'pdm_utils/pipelines/find_domains.py' 2023-06-28T00:11:57,463 adding 'pdm_utils/pipelines/find_membrane.py' 2023-06-28T00:11:57,468 adding 'pdm_utils/pipelines/find_transmembrane.py' 2023-06-28T00:11:57,472 adding 'pdm_utils/pipelines/freeze_db.py' 2023-06-28T00:11:57,484 adding 'pdm_utils/pipelines/get_data.py' 2023-06-28T00:11:57,489 adding 'pdm_utils/pipelines/get_db.py' 2023-06-28T00:11:57,494 adding 'pdm_utils/pipelines/get_gb_records.py' 2023-06-28T00:11:57,518 adding 'pdm_utils/pipelines/import_genome.py' 2023-06-28T00:11:57,524 adding 'pdm_utils/pipelines/pham_finder.py' 2023-06-28T00:11:57,531 adding 'pdm_utils/pipelines/pham_review.py' 2023-06-28T00:11:57,536 adding 'pdm_utils/pipelines/phamerate.py' 2023-06-28T00:11:57,540 adding 'pdm_utils/pipelines/push_db.py' 2023-06-28T00:11:57,549 adding 'pdm_utils/pipelines/revise.py' 2023-06-28T00:11:57,553 adding 'pdm_utils/pipelines/update_field.py' 2023-06-28T00:11:57,570 adding 'pdm_utils-1.1.1.dist-info/LICENSE' 2023-06-28T00:11:57,573 adding 'pdm_utils-1.1.1.dist-info/METADATA' 2023-06-28T00:11:57,575 adding 'pdm_utils-1.1.1.dist-info/WHEEL' 2023-06-28T00:11:57,577 adding 'pdm_utils-1.1.1.dist-info/entry_points.txt' 2023-06-28T00:11:57,579 adding 'pdm_utils-1.1.1.dist-info/top_level.txt' 2023-06-28T00:11:57,583 adding 'pdm_utils-1.1.1.dist-info/RECORD' 2023-06-28T00:11:57,599 removing build/bdist.linux-armv7l/wheel 2023-06-28T00:11:57,775 Building wheel for pdm-utils (pyproject.toml): finished with status 'done' 2023-06-28T00:11:57,804 Created wheel for pdm-utils: filename=pdm_utils-1.1.1-py3-none-any.whl size=276153 sha256=82bd2f4e11c642c6b54641d63227fcb12168dfa02509d3f15fbabd2773ab280c 2023-06-28T00:11:57,806 Stored in directory: /tmp/pip-ephem-wheel-cache-u7o4u9es/wheels/44/0c/a3/88dbcacef26e2b348e912ff9740d0c847812a383dee705fa8d 2023-06-28T00:11:57,842 Successfully built pdm-utils 2023-06-28T00:11:57,868 Removed build tracker: '/tmp/pip-build-tracker-048hlj0x'