2023-06-28T03:24:54,190 Created temporary directory: /tmp/pip-build-tracker-zht_n6o2 2023-06-28T03:24:54,191 Initialized build tracking at /tmp/pip-build-tracker-zht_n6o2 2023-06-28T03:24:54,191 Created build tracker: /tmp/pip-build-tracker-zht_n6o2 2023-06-28T03:24:54,192 Entered build tracker: /tmp/pip-build-tracker-zht_n6o2 2023-06-28T03:24:54,192 Created temporary directory: /tmp/pip-wheel-n4t9s_ha 2023-06-28T03:24:54,195 Created temporary directory: /tmp/pip-ephem-wheel-cache-jfp922qt 2023-06-28T03:24:54,223 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-28T03:24:54,226 2 location(s) to search for versions of sparsesem: 2023-06-28T03:24:54,226 * https://pypi.org/simple/sparsesem/ 2023-06-28T03:24:54,226 * https://www.piwheels.org/simple/sparsesem/ 2023-06-28T03:24:54,226 Fetching project page and analyzing links: https://pypi.org/simple/sparsesem/ 2023-06-28T03:24:54,227 Getting page https://pypi.org/simple/sparsesem/ 2023-06-28T03:24:54,228 Found index url https://pypi.org/simple/ 2023-06-28T03:24:54,295 Fetched page https://pypi.org/simple/sparsesem/ as application/vnd.pypi.simple.v1+json 2023-06-28T03:24:54,297 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/28/bf/ecaae6871258dfae1b301abb0b1db6b31cc664b14fecd39ba450853b1c2f/sparseSEM-1.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-06-28T03:24:54,298 Found link https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 1.0 2023-06-28T03:24:54,298 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/98/5e/b029b5529389bff97775e70f0bc72c37ed3c927a2371900bc584d2f894a0/sparseSEM-1.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-06-28T03:24:54,298 Found link https://files.pythonhosted.org/packages/75/29/7af0589feb4e3d7d9edd93b2800effadcbecf41cf275d28b053bd81e5daf/sparseSEM-1.1.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 1.1 2023-06-28T03:24:54,299 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/53/bc/44a2d84f0eb6596f619cfd120337d5ba31ac5607df529d20766a4a66b9e2/sparseSEM-2.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-06-28T03:24:54,299 Found link https://files.pythonhosted.org/packages/18/c0/91a20e815164372250042b8dc422928b479d47ebe42c7aa1588e3021135f/sparseSEM-2.0.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 2.0 2023-06-28T03:24:54,300 Fetching project page and analyzing links: https://www.piwheels.org/simple/sparsesem/ 2023-06-28T03:24:54,300 Getting page https://www.piwheels.org/simple/sparsesem/ 2023-06-28T03:24:54,301 Found index url https://www.piwheels.org/simple/ 2023-06-28T03:24:54,472 Fetched page https://www.piwheels.org/simple/sparsesem/ as text/html 2023-06-28T03:24:54,473 Skipping link: not a file: https://www.piwheels.org/simple/sparsesem/ 2023-06-28T03:24:54,474 Skipping link: not a file: https://pypi.org/simple/sparsesem/ 2023-06-28T03:24:54,491 Given no hashes to check 1 links for project 'sparsesem': discarding no candidates 2023-06-28T03:24:54,508 Collecting sparsesem==2.0 2023-06-28T03:24:54,510 Created temporary directory: /tmp/pip-unpack-1q9pele7 2023-06-28T03:24:54,558 Downloading sparseSEM-2.0.tar.gz (4.9 MB) 2023-06-28T03:24:55,230 Added sparsesem==2.0 from https://files.pythonhosted.org/packages/18/c0/91a20e815164372250042b8dc422928b479d47ebe42c7aa1588e3021135f/sparseSEM-2.0.tar.gz to build tracker '/tmp/pip-build-tracker-zht_n6o2' 2023-06-28T03:24:55,232 Running setup.py (path:/tmp/pip-wheel-n4t9s_ha/sparsesem_49296c4624b34cfcbac0fbb05078453f/setup.py) egg_info for package sparsesem 2023-06-28T03:24:55,233 Created temporary directory: /tmp/pip-pip-egg-info-cw6gdvzo 2023-06-28T03:24:55,233 Preparing metadata (setup.py): started 2023-06-28T03:24:55,234 Running command python setup.py egg_info 2023-06-28T03:24:55,948 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-06-28T03:24:55,949 !! 2023-06-28T03:24:55,949 ******************************************************************************** 2023-06-28T03:24:55,949 Requirements should be satisfied by a PEP 517 installer. 2023-06-28T03:24:55,949 If you are using pip, you can try `pip install --use-pep517`. 2023-06-28T03:24:55,949 ******************************************************************************** 2023-06-28T03:24:55,950 !! 2023-06-28T03:24:55,950 dist.fetch_build_eggs(dist.setup_requires) 2023-06-28T03:24:56,103 running egg_info 2023-06-28T03:24:56,104 creating /tmp/pip-pip-egg-info-cw6gdvzo/sparseSEM.egg-info 2023-06-28T03:24:56,131 writing /tmp/pip-pip-egg-info-cw6gdvzo/sparseSEM.egg-info/PKG-INFO 2023-06-28T03:24:56,133 writing dependency_links to /tmp/pip-pip-egg-info-cw6gdvzo/sparseSEM.egg-info/dependency_links.txt 2023-06-28T03:24:56,135 writing requirements to /tmp/pip-pip-egg-info-cw6gdvzo/sparseSEM.egg-info/requires.txt 2023-06-28T03:24:56,136 writing top-level names to /tmp/pip-pip-egg-info-cw6gdvzo/sparseSEM.egg-info/top_level.txt 2023-06-28T03:24:56,138 writing manifest file '/tmp/pip-pip-egg-info-cw6gdvzo/sparseSEM.egg-info/SOURCES.txt' 2023-06-28T03:24:56,444 reading manifest file '/tmp/pip-pip-egg-info-cw6gdvzo/sparseSEM.egg-info/SOURCES.txt' 2023-06-28T03:24:56,446 reading manifest template 'MANIFEST.in' 2023-06-28T03:24:56,451 writing manifest file '/tmp/pip-pip-egg-info-cw6gdvzo/sparseSEM.egg-info/SOURCES.txt' 2023-06-28T03:24:56,533 Preparing metadata (setup.py): finished with status 'done' 2023-06-28T03:24:56,539 Source in /tmp/pip-wheel-n4t9s_ha/sparsesem_49296c4624b34cfcbac0fbb05078453f has version 2.0, which satisfies requirement sparsesem==2.0 from https://files.pythonhosted.org/packages/18/c0/91a20e815164372250042b8dc422928b479d47ebe42c7aa1588e3021135f/sparseSEM-2.0.tar.gz 2023-06-28T03:24:56,540 Removed sparsesem==2.0 from https://files.pythonhosted.org/packages/18/c0/91a20e815164372250042b8dc422928b479d47ebe42c7aa1588e3021135f/sparseSEM-2.0.tar.gz from build tracker '/tmp/pip-build-tracker-zht_n6o2' 2023-06-28T03:24:56,546 Created temporary directory: /tmp/pip-unpack-v0ye751w 2023-06-28T03:24:56,547 Building wheels for collected packages: sparsesem 2023-06-28T03:24:56,551 Created temporary directory: /tmp/pip-wheel-lukdjynw 2023-06-28T03:24:56,551 Building wheel for sparsesem (setup.py): started 2023-06-28T03:24:56,552 Destination directory: /tmp/pip-wheel-lukdjynw 2023-06-28T03:24:56,552 Running command python setup.py bdist_wheel 2023-06-28T03:24:57,438 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-06-28T03:24:57,438 !! 2023-06-28T03:24:57,438 ******************************************************************************** 2023-06-28T03:24:57,439 Requirements should be satisfied by a PEP 517 installer. 2023-06-28T03:24:57,439 If you are using pip, you can try `pip install --use-pep517`. 2023-06-28T03:24:57,439 ******************************************************************************** 2023-06-28T03:24:57,439 !! 2023-06-28T03:24:57,439 dist.fetch_build_eggs(dist.setup_requires) 2023-06-28T03:24:57,654 running bdist_wheel 2023-06-28T03:24:57,950 running build 2023-06-28T03:24:57,951 running build_py 2023-06-28T03:24:57,980 creating build 2023-06-28T03:24:57,981 creating build/lib.linux-armv7l-cpython-39 2023-06-28T03:24:57,981 creating build/lib.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:57,983 copying sparseSEM/elasticNetSMLcv.py -> build/lib.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:57,985 copying sparseSEM/elasticNetSMLpoint.py -> build/lib.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:57,987 copying sparseSEM/elasticNetSML.py -> build/lib.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:57,989 copying sparseSEM/loadSEMlib.py -> build/lib.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:57,991 copying sparseSEM/__init__.py -> build/lib.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:57,993 copying sparseSEM/enSEM_STS.py -> build/lib.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:57,995 running egg_info 2023-06-28T03:24:58,046 writing sparseSEM.egg-info/PKG-INFO 2023-06-28T03:24:58,047 writing dependency_links to sparseSEM.egg-info/dependency_links.txt 2023-06-28T03:24:58,049 writing requirements to sparseSEM.egg-info/requires.txt 2023-06-28T03:24:58,050 writing top-level names to sparseSEM.egg-info/top_level.txt 2023-06-28T03:24:58,080 reading manifest file 'sparseSEM.egg-info/SOURCES.txt' 2023-06-28T03:24:58,082 reading manifest template 'MANIFEST.in' 2023-06-28T03:24:58,088 writing manifest file 'sparseSEM.egg-info/SOURCES.txt' 2023-06-28T03:24:58,090 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'sparseSEM.src' is absent from the `packages` configuration. 2023-06-28T03:24:58,091 !! 2023-06-28T03:24:58,091 ******************************************************************************** 2023-06-28T03:24:58,091 ############################ 2023-06-28T03:24:58,091 # Package would be ignored # 2023-06-28T03:24:58,091 ############################ 2023-06-28T03:24:58,092 Python recognizes 'sparseSEM.src' as an importable package[^1], 2023-06-28T03:24:58,092 but it is absent from setuptools' `packages` configuration. 2023-06-28T03:24:58,092 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-28T03:24:58,092 package, please make sure that 'sparseSEM.src' is explicitly added 2023-06-28T03:24:58,092 to the `packages` configuration field. 2023-06-28T03:24:58,092 Alternatively, you can also rely on setuptools' discovery methods 2023-06-28T03:24:58,093 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-28T03:24:58,093 instead of `find_packages(...)`/`find:`). 2023-06-28T03:24:58,093 You can read more about "package discovery" on setuptools documentation page: 2023-06-28T03:24:58,093 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-28T03:24:58,094 If you don't want 'sparseSEM.src' to be distributed and are 2023-06-28T03:24:58,094 already explicitly excluding 'sparseSEM.src' via 2023-06-28T03:24:58,094 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-28T03:24:58,095 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-28T03:24:58,095 combination with a more fine grained `package-data` configuration. 2023-06-28T03:24:58,095 You can read more about "package data files" on setuptools documentation page: 2023-06-28T03:24:58,095 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-28T03:24:58,096 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-28T03:24:58,096 even if it does not contain any `.py` files. 2023-06-28T03:24:58,096 On the other hand, currently there is no concept of package data 2023-06-28T03:24:58,096 directory, all directories are treated like packages. 2023-06-28T03:24:58,096 ******************************************************************************** 2023-06-28T03:24:58,096 !! 2023-06-28T03:24:58,096 check.warn(importable) 2023-06-28T03:24:58,097 copying sparseSEM/sparseSEM.cpython-310-darwin.so -> build/lib.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:58,098 creating build/lib.linux-armv7l-cpython-39/sparseSEM/src 2023-06-28T03:24:58,099 copying sparseSEM/src/lassoSEM.c -> build/lib.linux-armv7l-cpython-39/sparseSEM/src 2023-06-28T03:24:58,102 copying sparseSEM/src/lassoSEM.h -> build/lib.linux-armv7l-cpython-39/sparseSEM/src 2023-06-28T03:24:58,104 copying sparseSEM/src/lassoSMLv11beta.c -> build/lib.linux-armv7l-cpython-39/sparseSEM/src 2023-06-28T03:24:58,110 running build_ext 2023-06-28T03:24:58,116 building 'sparseSEM' extension 2023-06-28T03:24:58,117 creating build/temp.linux-armv7l-cpython-39 2023-06-28T03:24:58,117 creating build/temp.linux-armv7l-cpython-39/sparseSEM 2023-06-28T03:24:58,118 creating build/temp.linux-armv7l-cpython-39/sparseSEM/src 2023-06-28T03:24:58,119 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -IsparseSEM/src -I/opt/intel/oneapi/mkl/2023.1.0/include -I/usr/include/python3.9 -c sparseSEM/src/lassoSEM.c -o build/temp.linux-armv7l-cpython-39/sparseSEM/src/lassoSEM.o -std=c11 -O2 2023-06-28T03:24:58,213 sparseSEM/src/lassoSEM.c:5:10: fatal error: mkl.h: No such file or directory 2023-06-28T03:24:58,213 5 | #include "mkl.h" 2023-06-28T03:24:58,213 | ^~~~~~~ 2023-06-28T03:24:58,213 compilation terminated. 2023-06-28T03:24:58,217 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-06-28T03:24:58,315 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-06-28T03:24:58,332 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-06-28T03:24:58,332 exec(compile('"'"''"'"''"'"' 2023-06-28T03:24:58,332 # This is -- a caller that pip uses to run setup.py 2023-06-28T03:24:58,332 # 2023-06-28T03:24:58,332 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-06-28T03:24:58,332 # import from `distutils.core` to work with newer packaging standards. 2023-06-28T03:24:58,332 # - It provides a clear error message when setuptools is not installed. 2023-06-28T03:24:58,332 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-06-28T03:24:58,332 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-06-28T03:24:58,332 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-06-28T03:24:58,332 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-06-28T03:24:58,332 import os, sys, tokenize 2023-06-28T03:24:58,332 2023-06-28T03:24:58,332 try: 2023-06-28T03:24:58,332 import setuptools 2023-06-28T03:24:58,332 except ImportError as error: 2023-06-28T03:24:58,332 print( 2023-06-28T03:24:58,332 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-06-28T03:24:58,332 "the build environment.", 2023-06-28T03:24:58,332 file=sys.stderr, 2023-06-28T03:24:58,332 ) 2023-06-28T03:24:58,332 sys.exit(1) 2023-06-28T03:24:58,332 2023-06-28T03:24:58,332 __file__ = %r 2023-06-28T03:24:58,332 sys.argv[0] = __file__ 2023-06-28T03:24:58,332 2023-06-28T03:24:58,332 if os.path.exists(__file__): 2023-06-28T03:24:58,332 filename = __file__ 2023-06-28T03:24:58,332 with tokenize.open(__file__) as f: 2023-06-28T03:24:58,332 setup_py_code = f.read() 2023-06-28T03:24:58,332 else: 2023-06-28T03:24:58,332 filename = "" 2023-06-28T03:24:58,332 setup_py_code = "from setuptools import setup; setup()" 2023-06-28T03:24:58,332 2023-06-28T03:24:58,332 exec(compile(setup_py_code, filename, "exec")) 2023-06-28T03:24:58,332 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-n4t9s_ha/sparsesem_49296c4624b34cfcbac0fbb05078453f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-lukdjynw[/] 2023-06-28T03:24:58,332 [bold magenta]cwd[/]: /tmp/pip-wheel-n4t9s_ha/sparsesem_49296c4624b34cfcbac0fbb05078453f/ 2023-06-28T03:24:58,332 Building wheel for sparsesem (setup.py): finished with status 'error' 2023-06-28T03:24:58,333 ERROR: Failed building wheel for sparsesem 2023-06-28T03:24:58,334 Running setup.py clean for sparsesem 2023-06-28T03:24:58,335 Running command python setup.py clean 2023-06-28T03:24:59,020 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-06-28T03:24:59,021 !! 2023-06-28T03:24:59,021 ******************************************************************************** 2023-06-28T03:24:59,021 Requirements should be satisfied by a PEP 517 installer. 2023-06-28T03:24:59,022 If you are using pip, you can try `pip install --use-pep517`. 2023-06-28T03:24:59,022 ******************************************************************************** 2023-06-28T03:24:59,022 !! 2023-06-28T03:24:59,022 dist.fetch_build_eggs(dist.setup_requires) 2023-06-28T03:24:59,176 running clean 2023-06-28T03:24:59,228 removing 'build/temp.linux-armv7l-cpython-39' (and everything under it) 2023-06-28T03:24:59,231 removing 'build/lib.linux-armv7l-cpython-39' (and everything under it) 2023-06-28T03:24:59,236 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-06-28T03:24:59,236 'build/scripts-3.9' does not exist -- can't clean it 2023-06-28T03:24:59,236 removing 'build' 2023-06-28T03:24:59,307 Failed to build sparsesem 2023-06-28T03:24:59,309 ERROR: Failed to build one or more wheels 2023-06-28T03:24:59,310 Exception information: 2023-06-28T03:24:59,310 Traceback (most recent call last): 2023-06-28T03:24:59,310 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-06-28T03:24:59,310 status = run_func(*args) 2023-06-28T03:24:59,310 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-06-28T03:24:59,310 return func(self, options, args) 2023-06-28T03:24:59,310 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-06-28T03:24:59,310 raise CommandError("Failed to build one or more wheels") 2023-06-28T03:24:59,310 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-06-28T03:24:59,313 Removed build tracker: '/tmp/pip-build-tracker-zht_n6o2'