2023-06-28T18:53:30,973 Created temporary directory: /tmp/pip-build-tracker-je1m6ip9 2023-06-28T18:53:30,974 Initialized build tracking at /tmp/pip-build-tracker-je1m6ip9 2023-06-28T18:53:30,975 Created build tracker: /tmp/pip-build-tracker-je1m6ip9 2023-06-28T18:53:30,975 Entered build tracker: /tmp/pip-build-tracker-je1m6ip9 2023-06-28T18:53:30,975 Created temporary directory: /tmp/pip-wheel-u7_8qryn 2023-06-28T18:53:30,979 Created temporary directory: /tmp/pip-ephem-wheel-cache-whwtjiia 2023-06-28T18:53:31,005 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-28T18:53:31,008 2 location(s) to search for versions of pgenlib: 2023-06-28T18:53:31,008 * https://pypi.org/simple/pgenlib/ 2023-06-28T18:53:31,008 * https://www.piwheels.org/simple/pgenlib/ 2023-06-28T18:53:31,008 Fetching project page and analyzing links: https://pypi.org/simple/pgenlib/ 2023-06-28T18:53:31,009 Getting page https://pypi.org/simple/pgenlib/ 2023-06-28T18:53:31,010 Found index url https://pypi.org/simple/ 2023-06-28T18:53:31,151 Fetched page https://pypi.org/simple/pgenlib/ as application/vnd.pypi.simple.v1+json 2023-06-28T18:53:31,160 Found link https://files.pythonhosted.org/packages/d9/cc/f3bbaa8da897e9a04e1a885183a0c533ba563bb3a1dbfba6680704473336/Pgenlib-0.81.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.1 2023-06-28T18:53:31,161 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/22/06/d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02/Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,161 Found link https://files.pythonhosted.org/packages/6d/f7/c286a64ec213ea42bfa67b20ce1271b0b8699ac3880854657f8ed1620759/Pgenlib-0.81.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.2 2023-06-28T18:53:31,162 Found link https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.3 2023-06-28T18:53:31,163 Found link https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.0 2023-06-28T18:53:31,163 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/2b/91/1d7b72b61c624763fc29c3e54df394bc611080a3dc2176af2332257e8fac/Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,163 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/30/d1/166d130225f03033df8ca688ef54dca200fb3de3419f0edc914afd21a3a7/Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,163 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/be/d5/85dc2412def8644cccfafe6722e7d1c5411c9725366156eef4aec843ba95/Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,163 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a1/74/ade2137ac2eee449bfa959f5808cc6d1bdc6cec4cd9b4fabcd416246a889/Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,164 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/9a/65/79600073fc41faaa2b008b1bedf9233125aeaad404a973e563810268a626/Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,164 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/29/20/876e704d95b3ca26e7a554532385d52f2133cd99d2f132a29fb16062cb4d/Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,164 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b5/32/8dbf9cb1a3a3a6950deab99e0515a753273396ef1770b5d2491e1f8eaba9/Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,164 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/fc/24/2e6994141f63fd6c129b0bd0bbc9ef8df91e98b171a5ae0a5aeb7a01532c/Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,164 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/8e/3a2eef4571d6d2c8604a3810c3e092c9e145839934dde6c91ecf4be63be8/Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,165 Found link https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.1 2023-06-28T18:53:31,165 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/0a/86ce9fc2291a83b63817ac43b8f2924af9c02746b4f20c44142ce9f8a4ce/Pgenlib-0.83.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,165 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/73/924728769d9bd1e738190588c1ac1c2fc53d65641565c013ac1d79fe8403/Pgenlib-0.83.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,166 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/3b/22/29e510423558b22e98374496ef7c8b178c5f4d47f6e9c1fe4999c6ee8761/Pgenlib-0.83.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,166 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7c/a9/5987776baf730f0f8e8b44b7c358f8b2b44cb24f9fa938b9f6dcb8724f69/Pgenlib-0.83.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,166 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/88/64/2df132fbea4b3aad80aab161c90e9f24e5d494917605b1f01f522950d07e/Pgenlib-0.83.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,166 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/02/4e/df2808d3f87f77419e0abb68544f0f220c261a7eed6433c7150eff1fec49/Pgenlib-0.83.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,166 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c1/14/00aaf84a05ae9b25f51af36f285614e42c557860051fe16ef0860b03b3c6/Pgenlib-0.83.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,167 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/a8/832b27db6e563e46c40e59714a0adf09959d67d964feb5ef84b51f89a0b9/Pgenlib-0.83.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,167 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/5b/ba/ba9401daf559588f84aa8ff82b55ce1aac6339a69028a3b14748af74539f/Pgenlib-0.83.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,167 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b6/d7/6cf098fd410209d749e41610daeb12b440ea603a45f787a49474461c6043/Pgenlib-0.83.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,167 Found link https://files.pythonhosted.org/packages/b5/f4/6cd16a7f543438c5910cec68bd5d49d231152753f3f53f4dda1322305522/Pgenlib-0.83.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.83.0 2023-06-28T18:53:31,168 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/16/24/5e5f3f751fc014e67c567073089e5ff22887c890ddcb33b2eee234b2ff66/Pgenlib-0.90.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,168 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/43/45/b23b200529cc05e27de60c6623e3c272f3babacd46ba7ca04f8ba8cee212/Pgenlib-0.90.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,168 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/af/14f03aa5e6568810347aef280eb57b82a5a45e03f33c9653d56685a5157c/Pgenlib-0.90.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,168 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/59/d6/7157c61da0ebb0d2f05ba178ef1c57e567054192e47153ea29952de377c9/Pgenlib-0.90.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,169 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/4b/62/3d03109e3a79b4981cde01c00f7d63b2f850599d3b4c06125e0561b0dbd7/Pgenlib-0.90.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,169 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7f/75/03cbd46f9f1cb21c22745c4548f85b5e548b1e5a5cbb4d69064f111c3f77/Pgenlib-0.90.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,169 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/da/25/eef614e9ea13964aed3aa93211d44fc0a53591fe59901def7f0842c26259/Pgenlib-0.90.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,169 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f3/b0/01e1c04e3fe156252d1ebb82f362da5642a128d72c5a67c481b26986d450/Pgenlib-0.90.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,169 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/05/cc/185166c604f18f1d60291fd0d407d6c02b26e712af8e39bfaabfe9be57ce/Pgenlib-0.90.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,170 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/45/60/dd584321eedc419f7b1aee92fc15110070714ca949ee012bf5dddffec6cf/Pgenlib-0.90.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,170 Found link https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.0 2023-06-28T18:53:31,170 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0a/24/eb4944605bf1ad5142466d268aac02ca2c1e57242511578ae521c3427e77/Pgenlib-0.90.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,171 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/47/c5/b8acab2c2db8acbf153d4e1284236838d31c0f17df797f04f15686e5f15d/Pgenlib-0.90.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,171 Skipping link: No binaries permitted for pgenlib: 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https://files.pythonhosted.org/packages/b7/6d/db7f7f9acb0dd3c0a39055738727a047371595a3c79f13c29e77b633eb72/Pgenlib-0.90.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,171 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/e3/84/c69234c8f522d7d67459ad1288fb516a39f588dcab297b29a619ee3f340b/Pgenlib-0.90.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,172 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/82/44/df286e42696ea0bf1f817e5a7a924f268ee25d4644c654f4b89f14375705/Pgenlib-0.90.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,172 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c3/c3/30647c9cbafe729c786891bb3c873535bf8d667fb6b218642ada95738517/Pgenlib-0.90.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,172 Found link https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.1 2023-06-28T18:53:31,173 Fetching project page and analyzing links: https://www.piwheels.org/simple/pgenlib/ 2023-06-28T18:53:31,173 Getting page https://www.piwheels.org/simple/pgenlib/ 2023-06-28T18:53:31,174 Found index url https://www.piwheels.org/simple/ 2023-06-28T18:53:31,334 Fetched page https://www.piwheels.org/simple/pgenlib/ as text/html 2023-06-28T18:53:31,339 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv7l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,339 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv6l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,339 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv7l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,339 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv6l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,340 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv7l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,340 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv6l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,340 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv7l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,340 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv6l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,340 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv7l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,341 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv6l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,341 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv7l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,341 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv6l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,341 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv7l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,341 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv6l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-06-28T18:53:31,342 Skipping link: not a file: https://www.piwheels.org/simple/pgenlib/ 2023-06-28T18:53:31,342 Skipping link: not a file: https://pypi.org/simple/pgenlib/ 2023-06-28T18:53:31,360 Given no hashes to check 1 links for project 'pgenlib': discarding no candidates 2023-06-28T18:53:31,377 Collecting pgenlib==0.90.1 2023-06-28T18:53:31,379 Created temporary directory: /tmp/pip-unpack-o4zv1ai0 2023-06-28T18:53:31,437 Downloading Pgenlib-0.90.1.tar.gz (1.0 MB) 2023-06-28T18:53:32,039 Added pgenlib==0.90.1 from https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz to build tracker '/tmp/pip-build-tracker-je1m6ip9' 2023-06-28T18:53:32,046 Created temporary directory: /tmp/pip-build-env-fon8p58v 2023-06-28T18:53:32,056 Installing build dependencies: started 2023-06-28T18:53:32,058 Running command pip subprocess to install build dependencies 2023-06-28T18:53:33,244 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-06-28T18:53:33,617 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-28T18:53:35,322 Collecting setuptools 2023-06-28T18:53:35,397 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-06-28T18:53:35,659 Collecting wheel 2023-06-28T18:53:35,678 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-06-28T18:53:35,805 Collecting oldest-supported-numpy>=2022.8.16 2023-06-28T18:53:35,832 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2022.11.19-py3-none-any.whl (4.9 kB) 2023-06-28T18:53:37,341 Collecting Cython>=0.29.21 2023-06-28T18:53:37,715 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.35-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-06-28T18:53:39,448 Collecting numpy==1.19.3 (from oldest-supported-numpy>=2022.8.16) 2023-06-28T18:53:40,207 Using cached https://www.piwheels.org/simple/numpy/numpy-1.19.3-cp39-cp39-linux_armv7l.whl (10.5 MB) 2023-06-28T18:53:42,266 Installing collected packages: wheel, setuptools, numpy, Cython, oldest-supported-numpy 2023-06-28T18:53:42,501 Creating /tmp/pip-build-env-fon8p58v/overlay/bin 2023-06-28T18:53:42,504 changing mode of /tmp/pip-build-env-fon8p58v/overlay/bin/wheel to 755 2023-06-28T18:53:51,317 changing mode of /tmp/pip-build-env-fon8p58v/overlay/bin/f2py to 755 2023-06-28T18:53:51,319 changing mode of /tmp/pip-build-env-fon8p58v/overlay/bin/f2py3 to 755 2023-06-28T18:53:51,322 changing mode of /tmp/pip-build-env-fon8p58v/overlay/bin/f2py3.9 to 755 2023-06-28T18:53:54,075 changing mode of /tmp/pip-build-env-fon8p58v/overlay/bin/cygdb to 755 2023-06-28T18:53:54,078 changing mode of /tmp/pip-build-env-fon8p58v/overlay/bin/cython to 755 2023-06-28T18:53:54,080 changing mode of /tmp/pip-build-env-fon8p58v/overlay/bin/cythonize to 755 2023-06-28T18:53:54,122 Successfully installed Cython-0.29.35 numpy-1.19.3 oldest-supported-numpy-2022.11.19 setuptools-68.0.0 wheel-0.40.0 2023-06-28T18:53:54,514 Installing build dependencies: finished with status 'done' 2023-06-28T18:53:54,519 Getting requirements to build wheel: started 2023-06-28T18:53:54,520 Running command Getting requirements to build wheel 2023-06-28T18:53:59,923 Compiling src/pgenlib/pgenlib.pyx because it depends on /tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-06-28T18:53:59,923 [1/1] Cythonizing src/pgenlib/pgenlib.pyx 2023-06-28T18:53:59,995 running egg_info 2023-06-28T18:54:00,003 writing src/Pgenlib.egg-info/PKG-INFO 2023-06-28T18:54:00,005 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-06-28T18:54:00,008 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-06-28T18:54:00,046 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-06-28T18:54:00,062 reading manifest template 'MANIFEST.in' 2023-06-28T18:54:00,065 warning: no files found matching 'src/plink2/include/check.h' 2023-06-28T18:54:00,066 warning: no files found matching 'src/plink2/include/debug-trap.h' 2023-06-28T18:54:00,066 warning: no files found matching 'src/plink2/include/hedley.h' 2023-06-28T18:54:00,067 warning: no files found matching 'src/plink2/include/simde-common.h' 2023-06-28T18:54:00,067 warning: no files found matching 'src/plink2/include/simde-detect-clang.h' 2023-06-28T18:54:00,068 warning: no files found matching 'src/plink2/include/simde-arch.h' 2023-06-28T18:54:00,068 warning: no files found matching 'src/plink2/include/simde-features.h' 2023-06-28T18:54:00,069 warning: no files found matching 'src/plink2/include/simde-diagnostic.h' 2023-06-28T18:54:00,069 warning: no files found matching 'src/plink2/include/simde-math.h' 2023-06-28T18:54:00,070 warning: no files found matching 'src/plink2/include/simde-constify.h' 2023-06-28T18:54:00,070 warning: no files found matching 'src/plink2/include/simde-align.h' 2023-06-28T18:54:00,071 warning: no files found matching 'src/plink2/include/x86/mmx.h' 2023-06-28T18:54:00,071 warning: no files found matching 'src/plink2/include/x86/sse.h' 2023-06-28T18:54:00,071 warning: no files found matching 'src/plink2/include/x86/sse2.h' 2023-06-28T18:54:00,082 adding license file 'LICENSE' 2023-06-28T18:54:00,091 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-06-28T18:54:00,438 Getting requirements to build wheel: finished with status 'done' 2023-06-28T18:54:00,448 Created temporary directory: /tmp/pip-modern-metadata-42iflboy 2023-06-28T18:54:00,451 Preparing metadata (pyproject.toml): started 2023-06-28T18:54:00,452 Running command Preparing metadata (pyproject.toml) 2023-06-28T18:54:01,937 running dist_info 2023-06-28T18:54:01,959 creating /tmp/pip-modern-metadata-42iflboy/Pgenlib.egg-info 2023-06-28T18:54:01,964 writing /tmp/pip-modern-metadata-42iflboy/Pgenlib.egg-info/PKG-INFO 2023-06-28T18:54:01,966 writing dependency_links to /tmp/pip-modern-metadata-42iflboy/Pgenlib.egg-info/dependency_links.txt 2023-06-28T18:54:01,968 writing top-level names to /tmp/pip-modern-metadata-42iflboy/Pgenlib.egg-info/top_level.txt 2023-06-28T18:54:01,969 writing manifest file '/tmp/pip-modern-metadata-42iflboy/Pgenlib.egg-info/SOURCES.txt' 2023-06-28T18:54:01,995 reading manifest file '/tmp/pip-modern-metadata-42iflboy/Pgenlib.egg-info/SOURCES.txt' 2023-06-28T18:54:01,997 reading manifest template 'MANIFEST.in' 2023-06-28T18:54:02,001 warning: no files found matching 'src/plink2/include/check.h' 2023-06-28T18:54:02,001 warning: no files found matching 'src/plink2/include/debug-trap.h' 2023-06-28T18:54:02,001 warning: no files found matching 'src/plink2/include/hedley.h' 2023-06-28T18:54:02,002 warning: no files found matching 'src/plink2/include/simde-common.h' 2023-06-28T18:54:02,002 warning: no files found matching 'src/plink2/include/simde-detect-clang.h' 2023-06-28T18:54:02,002 warning: no files found matching 'src/plink2/include/simde-arch.h' 2023-06-28T18:54:02,002 warning: no files found matching 'src/plink2/include/simde-features.h' 2023-06-28T18:54:02,002 warning: no files found matching 'src/plink2/include/simde-diagnostic.h' 2023-06-28T18:54:02,003 warning: no files found matching 'src/plink2/include/simde-math.h' 2023-06-28T18:54:02,003 warning: no files found matching 'src/plink2/include/simde-constify.h' 2023-06-28T18:54:02,003 warning: no files found matching 'src/plink2/include/simde-align.h' 2023-06-28T18:54:02,003 warning: no files found matching 'src/plink2/include/x86/mmx.h' 2023-06-28T18:54:02,003 warning: no files found matching 'src/plink2/include/x86/sse.h' 2023-06-28T18:54:02,004 warning: no files found matching 'src/plink2/include/x86/sse2.h' 2023-06-28T18:54:02,014 adding license file 'LICENSE' 2023-06-28T18:54:02,022 writing manifest file '/tmp/pip-modern-metadata-42iflboy/Pgenlib.egg-info/SOURCES.txt' 2023-06-28T18:54:02,023 creating '/tmp/pip-modern-metadata-42iflboy/Pgenlib-0.90.1.dist-info' 2023-06-28T18:54:02,245 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-28T18:54:02,251 Source in /tmp/pip-wheel-u7_8qryn/pgenlib_baed854ad418429dab71e9c27ab727b3 has version 0.90.1, which satisfies requirement pgenlib==0.90.1 from https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz 2023-06-28T18:54:02,252 Removed pgenlib==0.90.1 from https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz from build tracker '/tmp/pip-build-tracker-je1m6ip9' 2023-06-28T18:54:02,258 Created temporary directory: /tmp/pip-unpack-udzt64fd 2023-06-28T18:54:02,259 Building wheels for collected packages: pgenlib 2023-06-28T18:54:02,263 Created temporary directory: /tmp/pip-wheel-n_i6ywm5 2023-06-28T18:54:02,263 Destination directory: /tmp/pip-wheel-n_i6ywm5 2023-06-28T18:54:02,265 Building wheel for pgenlib (pyproject.toml): started 2023-06-28T18:54:02,266 Running command Building wheel for pgenlib (pyproject.toml) 2023-06-28T18:54:03,748 running bdist_wheel 2023-06-28T18:54:03,773 running build 2023-06-28T18:54:03,773 running build_clib 2023-06-28T18:54:03,785 building 'clib' library 2023-06-28T18:54:03,788 creating build 2023-06-28T18:54:03,789 creating build/temp.linux-armv7l-cpython-39 2023-06-28T18:54:03,790 creating build/temp.linux-armv7l-cpython-39/src 2023-06-28T18:54:03,791 creating build/temp.linux-armv7l-cpython-39/src/plink2 2023-06-28T18:54:03,792 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate 2023-06-28T18:54:03,793 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib 2023-06-28T18:54:03,794 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm 2023-06-28T18:54:03,796 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86 2023-06-28T18:54:03,797 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd 2023-06-28T18:54:03,798 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib 2023-06-28T18:54:03,799 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common 2023-06-28T18:54:03,800 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress 2023-06-28T18:54:03,802 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress 2023-06-28T18:54:03,803 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/adler32.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/adler32.o 2023-06-28T18:54:04,387 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/arm/arm_cpu_features.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm/arm_cpu_features.o 2023-06-28T18:54:04,559 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/crc32.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/crc32.o 2023-06-28T18:54:05,217 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_compress.o 2023-06-28T18:54:10,592 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_decompress.o 2023-06-28T18:54:11,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_compress.o 2023-06-28T18:54:11,601 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_decompress.o 2023-06-28T18:54:11,763 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/utils.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/utils.o 2023-06-28T18:54:11,913 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/x86/x86_cpu_features.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86/x86_cpu_features.o 2023-06-28T18:54:12,001 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_compress.o 2023-06-28T18:54:12,134 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_decompress.o 2023-06-28T18:54:12,277 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/debug.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/debug.o 2023-06-28T18:54:12,356 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/entropy_common.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/entropy_common.o 2023-06-28T18:54:12,750 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/error_private.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/error_private.o 2023-06-28T18:54:12,869 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/fse_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/fse_decompress.o 2023-06-28T18:54:13,769 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/pool.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/pool.o 2023-06-28T18:54:13,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/threading.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/threading.o 2023-06-28T18:54:14,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/xxhash.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/xxhash.o 2023-06-28T18:54:14,931 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/zstd_common.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/zstd_common.o 2023-06-28T18:54:15,128 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/fse_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/fse_compress.o 2023-06-28T18:54:15,961 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/hist.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/hist.o 2023-06-28T18:54:16,234 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/huf_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/huf_compress.o 2023-06-28T18:54:17,827 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress.o 2023-06-28T18:54:24,417 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_literals.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_literals.o 2023-06-28T18:54:24,751 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_sequences.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_sequences.o 2023-06-28T18:54:25,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_superblock.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_superblock.o 2023-06-28T18:54:26,046 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_double_fast.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_double_fast.o 2023-06-28T18:54:33,783 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_fast.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_fast.o 2023-06-28T18:54:41,315 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_lazy.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_lazy.o 2023-06-28T18:55:11,698 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_ldm.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_ldm.o 2023-06-28T18:55:12,866 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_opt.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_opt.o 2023-06-28T18:55:19,177 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstdmt_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstdmt_compress.o 2023-06-28T18:55:20,705 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/huf_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/huf_decompress.o 2023-06-28T18:55:24,049 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_ddict.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_ddict.o 2023-06-28T18:55:24,397 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress.o 2023-06-28T18:55:26,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress_block.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2023-06-28T18:55:32,112 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libclib.a build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/adler32.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm/arm_cpu_features.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/crc32.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/utils.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86/x86_cpu_features.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/debug.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/entropy_common.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/error_private.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/fse_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/pool.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/threading.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/xxhash.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/zstd_common.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/fse_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/hist.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/huf_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_literals.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_sequences.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_superblock.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_double_fast.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_fast.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_lazy.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_ldm.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_opt.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstdmt_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/huf_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_ddict.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2023-06-28T18:55:32,300 running build_ext 2023-06-28T18:55:32,303 building 'pgenlib' extension 2023-06-28T18:55:32,304 creating build/temp.linux-armv7l-cpython-39/src/pgenlib 2023-06-28T18:55:32,304 creating build/temp.linux-armv7l-cpython-39/src/plink2/include 2023-06-28T18:55:32,306 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/pgenlib/pgenlib.cpp -o build/temp.linux-armv7l-cpython-39/src/pgenlib/pgenlib.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:55:32,576 In file included from /tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2023-06-28T18:55:32,576 from /tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-06-28T18:55:32,576 from /tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2023-06-28T18:55:32,576 from src/pgenlib/pgenlib.cpp:815: 2023-06-28T18:55:32,577 /tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-06-28T18:55:32,577 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-06-28T18:55:32,577 | ^~~~~~~ 2023-06-28T18:55:32,638 src/pgenlib/pgenlib.cpp:1012: warning: "likely" redefined 2023-06-28T18:55:32,638 1012 | #define likely(x) __builtin_expect(!!(x), 1) 2023-06-28T18:55:32,638 | 2023-06-28T18:55:32,639 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2023-06-28T18:55:32,639 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2023-06-28T18:55:32,639 from src/pgenlib/pgenlib.cpp:820: 2023-06-28T18:55:32,639 src/pgenlib/../plink2/include/plink2_base.h:264: note: this is the location of the previous definition 2023-06-28T18:55:32,640 264 | # define likely(expr) __builtin_expect(!!(expr), 1) 2023-06-28T18:55:32,640 | 2023-06-28T18:55:32,640 src/pgenlib/pgenlib.cpp:1013: warning: "unlikely" redefined 2023-06-28T18:55:32,640 1013 | #define unlikely(x) __builtin_expect(!!(x), 0) 2023-06-28T18:55:32,640 | 2023-06-28T18:55:32,640 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2023-06-28T18:55:32,641 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2023-06-28T18:55:32,641 from src/pgenlib/pgenlib.cpp:820: 2023-06-28T18:55:32,641 src/pgenlib/../plink2/include/plink2_base.h:265: note: this is the location of the previous definition 2023-06-28T18:55:32,641 265 | # define unlikely(expr) __builtin_expect(!!(expr), 0) 2023-06-28T18:55:32,641 | 2023-06-28T18:55:33,702 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read*)’: 2023-06-28T18:55:33,703 src/pgenlib/pgenlib.cpp:8544:55: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,703 8544 | __pyx_t_9 = (((__pyx_v_geno_int_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,703 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,731 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages*)’: 2023-06-28T18:55:33,731 src/pgenlib/pgenlib.cpp:9198:55: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,731 9198 | __pyx_t_9 = (((__pyx_v_floatarr_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,731 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,757 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int)’: 2023-06-28T18:55:33,757 src/pgenlib/pgenlib.cpp:9757:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,757 9757 | __pyx_t_8 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,757 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,780 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, PyArrayObject*, int)’: 2023-06-28T18:55:33,780 src/pgenlib/pgenlib.cpp:10252:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,781 10252 | __pyx_t_8 = (((__pyx_v_allele_int32_out->dimensions[0]) < (2 * __pyx_v_subset_size)) != 0); 2023-06-28T18:55:33,781 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,783 src/pgenlib/pgenlib.cpp:10308:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,783 10308 | __pyx_t_8 = (((__pyx_v_phasepresent_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,784 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,804 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal8(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal8*)’: 2023-06-28T18:55:33,804 src/pgenlib/pgenlib.cpp:10798:58: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,804 10798 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,804 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,807 src/pgenlib/pgenlib.cpp:10854:58: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,807 10854 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,807 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,815 src/pgenlib/pgenlib.cpp:11079:56: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,815 11079 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,815 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,818 src/pgenlib/pgenlib.cpp:11135:56: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,818 11135 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,818 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,831 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal32(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal32*)’: 2023-06-28T18:55:33,832 src/pgenlib/pgenlib.cpp:11734:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,832 11734 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,832 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,834 src/pgenlib/pgenlib.cpp:11790:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,834 11790 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,835 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,842 src/pgenlib/pgenlib.cpp:12015:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,843 12015 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,843 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,845 src/pgenlib/pgenlib.cpp:12071:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,846 12071 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,846 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,859 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal64(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal64*)’: 2023-06-28T18:55:33,859 src/pgenlib/pgenlib.cpp:12670:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,859 12670 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,859 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,862 src/pgenlib/pgenlib.cpp:12726:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,862 12726 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,862 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,870 src/pgenlib/pgenlib.cpp:12951:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,870 12951 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,871 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,873 src/pgenlib/pgenlib.cpp:13007:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,873 13007 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,873 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,914 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal8(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal8*)’: 2023-06-28T18:55:33,914 src/pgenlib/pgenlib.cpp:14159:58: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,914 14159 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,914 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,917 src/pgenlib/pgenlib.cpp:14215:58: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,917 14215 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,917 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,926 src/pgenlib/pgenlib.cpp:14456:56: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,926 14456 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,926 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,929 src/pgenlib/pgenlib.cpp:14512:56: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,929 14512 | __pyx_t_5 = (((__pyx_v_geno_int8_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,929 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,947 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal32*)’: 2023-06-28T18:55:33,947 src/pgenlib/pgenlib.cpp:15207:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,948 15207 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,948 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,950 src/pgenlib/pgenlib.cpp:15263:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,950 15263 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,951 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,965 src/pgenlib/pgenlib.cpp:15504:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,965 15504 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,965 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,968 src/pgenlib/pgenlib.cpp:15560:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,968 15560 | __pyx_t_5 = (((__pyx_v_geno_int32_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,968 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,986 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal64*)’: 2023-06-28T18:55:33,986 src/pgenlib/pgenlib.cpp:16255:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,986 16255 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:33,986 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,989 src/pgenlib/pgenlib.cpp:16311:59: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,989 16311 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,989 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:33,997 src/pgenlib/pgenlib.cpp:16552:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:33,998 16552 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[0]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:33,998 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,000 src/pgenlib/pgenlib.cpp:16608:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,001 16608 | __pyx_t_5 = (((__pyx_v_geno_int64_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,001 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,050 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_range*)’: 2023-06-28T18:55:34,050 src/pgenlib/pgenlib.cpp:17953:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,050 17953 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,051 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,053 src/pgenlib/pgenlib.cpp:18009:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,053 18009 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[1]) < (2 * __pyx_v_subset_size)) != 0); 2023-06-28T18:55:34,053 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,062 src/pgenlib/pgenlib.cpp:18246:60: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,062 18246 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[0]) < (2 * __pyx_v_subset_size)) != 0); 2023-06-28T18:55:34,063 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,065 src/pgenlib/pgenlib.cpp:18302:60: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,065 18302 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,066 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,099 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_list*)’: 2023-06-28T18:55:34,099 src/pgenlib/pgenlib.cpp:19423:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,099 19423 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,099 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,102 src/pgenlib/pgenlib.cpp:19479:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,102 19479 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[1]) < (2 * __pyx_v_subset_size)) != 0); 2023-06-28T18:55:34,102 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,110 src/pgenlib/pgenlib.cpp:19720:60: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,111 19720 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[0]) < (2 * __pyx_v_subset_size)) != 0); 2023-06-28T18:55:34,111 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,113 src/pgenlib/pgenlib.cpp:19776:60: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,114 19776 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[1]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,114 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,152 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range*)’: 2023-06-28T18:55:34,153 src/pgenlib/pgenlib.cpp:20940:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,153 20940 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,153 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,155 src/pgenlib/pgenlib.cpp:20996:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,155 20996 | __pyx_t_10 = (((__pyx_v_phasepresent_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,156 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,158 src/pgenlib/pgenlib.cpp:21052:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,158 21052 | __pyx_t_10 = (((__pyx_v_allele_int32_out->dimensions[1]) < (2 * __pyx_v_subset_size)) != 0); 2023-06-28T18:55:34,159 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,161 src/pgenlib/pgenlib.cpp:21108:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,161 21108 | __pyx_t_10 = (((__pyx_v_phasepresent_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:34,162 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,194 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list*)’: 2023-06-28T18:55:34,194 src/pgenlib/pgenlib.cpp:21803:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,194 21803 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,194 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,196 src/pgenlib/pgenlib.cpp:21859:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,197 21859 | __pyx_t_12 = (((__pyx_v_phasepresent_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,197 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,199 src/pgenlib/pgenlib.cpp:21915:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,200 21915 | __pyx_t_12 = (((__pyx_v_allele_int32_out->dimensions[1]) < (2 * __pyx_v_subset_size)) != 0); 2023-06-28T18:55:34,200 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,202 src/pgenlib/pgenlib.cpp:21971:62: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,203 21971 | __pyx_t_12 = (((__pyx_v_phasepresent_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:34,203 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,270 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal32*)’: 2023-06-28T18:55:34,270 src/pgenlib/pgenlib.cpp:23730:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,271 23730 | __pyx_t_6 = (((__pyx_v_floatarr_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,271 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,273 src/pgenlib/pgenlib.cpp:23786:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,273 23786 | __pyx_t_6 = (((__pyx_v_floatarr_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:34,274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,288 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal64*)’: 2023-06-28T18:55:34,288 src/pgenlib/pgenlib.cpp:24247:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,288 24247 | __pyx_t_6 = (((__pyx_v_floatarr_out->dimensions[0]) < __pyx_v_variant_idx_ct) != 0); 2023-06-28T18:55:34,289 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:55:34,291 src/pgenlib/pgenlib.cpp:24303:57: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-06-28T18:55:34,291 24303 | __pyx_t_6 = (((__pyx_v_floatarr_out->dimensions[1]) < __pyx_v_subset_size) != 0); 2023-06-28T18:55:34,291 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-06-28T18:56:05,011 At global scope: 2023-06-28T18:56:05,012 cc1plus: note: unrecognized command-line option ‘-Wno-macro-redefined’ may have been intended to silence earlier diagnostics 2023-06-28T18:56:07,855 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_misc.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_misc.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:11,111 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_read.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_read.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:24,729 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_write.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_write.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:27,959 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_base.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_base.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:28,484 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_bgzf.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bgzf.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:29,821 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_bits.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bits.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:31,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_string.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_string.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:37,306 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_text.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_text.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:39,069 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_thread.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_thread.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:39,501 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_zstfile.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_zstfile.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:39,859 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/pgenlib_ffi_support.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/pgenlib_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:41,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-fon8p58v/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/pvar_ffi_support.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/pvar_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2023-06-28T18:56:42,376 creating build/lib.linux-armv7l-cpython-39 2023-06-28T18:56:42,377 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pgenlib/pgenlib.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_misc.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_read.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_write.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_base.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bgzf.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bits.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_string.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_text.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_thread.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_zstfile.o build/temp.linux-armv7l-cpython-39/src/plink2/pgenlib_ffi_support.o build/temp.linux-armv7l-cpython-39/src/plink2/pvar_ffi_support.o -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -lclib -o build/lib.linux-armv7l-cpython-39/pgenlib.cpython-39-arm-linux-gnueabihf.so -std=c++98 -lz 2023-06-28T18:56:43,046 installing to build/bdist.linux-armv7l/wheel 2023-06-28T18:56:43,046 running install 2023-06-28T18:56:43,071 running install_lib 2023-06-28T18:56:43,080 creating build/bdist.linux-armv7l 2023-06-28T18:56:43,080 creating build/bdist.linux-armv7l/wheel 2023-06-28T18:56:43,082 copying build/lib.linux-armv7l-cpython-39/pgenlib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-06-28T18:56:43,170 running install_egg_info 2023-06-28T18:56:43,201 running egg_info 2023-06-28T18:56:43,206 writing src/Pgenlib.egg-info/PKG-INFO 2023-06-28T18:56:43,207 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-06-28T18:56:43,209 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-06-28T18:56:43,226 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-06-28T18:56:43,239 reading manifest template 'MANIFEST.in' 2023-06-28T18:56:43,243 warning: no files found matching 'src/plink2/include/check.h' 2023-06-28T18:56:43,243 warning: no files found matching 'src/plink2/include/debug-trap.h' 2023-06-28T18:56:43,243 warning: no files found matching 'src/plink2/include/hedley.h' 2023-06-28T18:56:43,243 warning: no files found matching 'src/plink2/include/simde-common.h' 2023-06-28T18:56:43,244 warning: no files found matching 'src/plink2/include/simde-detect-clang.h' 2023-06-28T18:56:43,244 warning: no files found matching 'src/plink2/include/simde-arch.h' 2023-06-28T18:56:43,244 warning: no files found matching 'src/plink2/include/simde-features.h' 2023-06-28T18:56:43,244 warning: no files found matching 'src/plink2/include/simde-diagnostic.h' 2023-06-28T18:56:43,244 warning: no files found matching 'src/plink2/include/simde-math.h' 2023-06-28T18:56:43,245 warning: no files found matching 'src/plink2/include/simde-constify.h' 2023-06-28T18:56:43,245 warning: no files found matching 'src/plink2/include/simde-align.h' 2023-06-28T18:56:43,245 warning: no files found matching 'src/plink2/include/x86/mmx.h' 2023-06-28T18:56:43,245 warning: no files found matching 'src/plink2/include/x86/sse.h' 2023-06-28T18:56:43,245 warning: no files found matching 'src/plink2/include/x86/sse2.h' 2023-06-28T18:56:43,256 adding license file 'LICENSE' 2023-06-28T18:56:43,265 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-06-28T18:56:43,268 Copying src/Pgenlib.egg-info to build/bdist.linux-armv7l/wheel/Pgenlib-0.90.1-py3.9.egg-info 2023-06-28T18:56:43,276 running install_scripts 2023-06-28T18:56:43,318 creating build/bdist.linux-armv7l/wheel/Pgenlib-0.90.1.dist-info/WHEEL 2023-06-28T18:56:43,321 creating '/tmp/pip-wheel-n_i6ywm5/.tmp-zzwe3tmi/Pgenlib-0.90.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-28T18:56:44,375 adding 'pgenlib.cpython-39-arm-linux-gnueabihf.so' 2023-06-28T18:56:44,413 adding 'Pgenlib-0.90.1.dist-info/LICENSE' 2023-06-28T18:56:44,414 adding 'Pgenlib-0.90.1.dist-info/METADATA' 2023-06-28T18:56:44,415 adding 'Pgenlib-0.90.1.dist-info/WHEEL' 2023-06-28T18:56:44,416 adding 'Pgenlib-0.90.1.dist-info/top_level.txt' 2023-06-28T18:56:44,417 adding 'Pgenlib-0.90.1.dist-info/RECORD' 2023-06-28T18:56:44,438 removing build/bdist.linux-armv7l/wheel 2023-06-28T18:56:44,607 Building wheel for pgenlib (pyproject.toml): finished with status 'done' 2023-06-28T18:56:44,660 Created wheel for pgenlib: filename=Pgenlib-0.90.1-cp39-cp39-linux_armv7l.whl size=2011634 sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 2023-06-28T18:56:44,661 Stored in directory: /tmp/pip-ephem-wheel-cache-whwtjiia/wheels/1b/31/43/e7c389d0b3d219f59c8658e57fa39f4071e6411084964ca03d 2023-06-28T18:56:44,673 Successfully built pgenlib 2023-06-28T18:56:44,737 Removed build tracker: '/tmp/pip-build-tracker-je1m6ip9'