2023-06-28T22:46:30,546 Created temporary directory: /tmp/pip-build-tracker-b2qi6d5s
2023-06-28T22:46:30,549 Initialized build tracking at /tmp/pip-build-tracker-b2qi6d5s
2023-06-28T22:46:30,549 Created build tracker: /tmp/pip-build-tracker-b2qi6d5s
2023-06-28T22:46:30,550 Entered build tracker: /tmp/pip-build-tracker-b2qi6d5s
2023-06-28T22:46:30,551 Created temporary directory: /tmp/pip-wheel-xp1ynub0
2023-06-28T22:46:30,560 Created temporary directory: /tmp/pip-ephem-wheel-cache-ky8gdoky
2023-06-28T22:46:30,611 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-28T22:46:30,620 2 location(s) to search for versions of satmut-utils:
2023-06-28T22:46:30,620 * https://pypi.org/simple/satmut-utils/
2023-06-28T22:46:30,620 * https://www.piwheels.org/simple/satmut-utils/
2023-06-28T22:46:30,621 Fetching project page and analyzing links: https://pypi.org/simple/satmut-utils/
2023-06-28T22:46:30,622 Getting page https://pypi.org/simple/satmut-utils/
2023-06-28T22:46:30,626 Found index url https://pypi.org/simple/
2023-06-28T22:46:30,824 Fetched page https://pypi.org/simple/satmut-utils/ as application/vnd.pypi.simple.v1+json
2023-06-28T22:46:30,831   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/9d/7d/aa6a904965242a0c56c1ecc510cf3f4840936f6087b6f0203a9a718743c1/satmut_utils-1.0.0-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:30,832   Found link https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.0
2023-06-28T22:46:30,833   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/c1/c3/5c2d910cb9364b7f3a8ef7bea6aef6914c374cc1cfe7b7a217f4329fb167/satmut_utils-1.0.1-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:30,834   Found link https://files.pythonhosted.org/packages/3c/cb/1f7123f703b841687553195526b0253c632b3b13f17dbeefd1f24bfa7e9e/satmut_utils-1.0.1.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.1
2023-06-28T22:46:30,835   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/66/c0/576dbee34d884808eac267f6726c217d0bb366d6aa0d0d24fea1f1103def/satmut_utils-1.0.2-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:30,837   Found link https://files.pythonhosted.org/packages/4b/1b/2697ef2eb5e7fc90aaeb8fbe64d2c24069dbd0871f1fb6b23e5c7f66273f/satmut_utils-1.0.2.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.2
2023-06-28T22:46:30,837   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/85/2f/44449e247d8203168cd338bef490d92314d66b2dc0ea15ef3d03c6d7a9d1/satmut_utils-1.0.3-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:30,839   Found link https://files.pythonhosted.org/packages/33/f7/68da077554cf885a0fed028748c6e419bb97f64faa0a253ff4993fd08524/satmut_utils-1.0.3.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.3
2023-06-28T22:46:30,839   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/6b/66/2954cd80d73c55edbb61264e43335a0366eed686d458e0dec85191729f59/satmut_utils-1.0.4-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:30,841   Found link https://files.pythonhosted.org/packages/af/18/b40883e3aafdf867c3bc41141a21857eb93526b46a6fd0d64321a66f1cf1/satmut_utils-1.0.4.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.4
2023-06-28T22:46:30,841 Fetching project page and analyzing links: https://www.piwheels.org/simple/satmut-utils/
2023-06-28T22:46:30,842 Getting page https://www.piwheels.org/simple/satmut-utils/
2023-06-28T22:46:30,845 Found index url https://www.piwheels.org/simple/
2023-06-28T22:46:31,081 Fetched page https://www.piwheels.org/simple/satmut-utils/ as text/html
2023-06-28T22:46:31,086   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.3-py3-none-any.whl#sha256=59c120e0a32ed07a847cb94d055d007d238e8c9aa7ec6bbe5c792542ffeab2ca (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:31,087   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.2-py3-none-any.whl#sha256=b3eaebca5f040ebf0c60f26e3b9ccef1935ce70852728f24b3a1623f4c791c20 (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:31,087   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.1-py3-none-any.whl#sha256=3f7c43b678b5e344409e2cb0718742684066d907768826a7d19b85b4c43adae6 (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:31,088   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.0-py3-none-any.whl#sha256=851816d46080d9e7a7ac2f235ea191e2a32f936dbd625d4caff953f6b4c1495c (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-06-28T22:46:31,088 Skipping link: not a file: https://www.piwheels.org/simple/satmut-utils/
2023-06-28T22:46:31,089 Skipping link: not a file: https://pypi.org/simple/satmut-utils/
2023-06-28T22:46:31,123 Given no hashes to check 1 links for project 'satmut-utils': discarding no candidates
2023-06-28T22:46:31,154 Collecting satmut-utils==1.0.4
2023-06-28T22:46:31,159   Created temporary directory: /tmp/pip-unpack-lztb69r0
2023-06-28T22:46:31,374   Downloading satmut_utils-1.0.4.tar.gz (12.0 MB)
2023-06-28T22:46:35,947   Added satmut-utils==1.0.4 from https://files.pythonhosted.org/packages/af/18/b40883e3aafdf867c3bc41141a21857eb93526b46a6fd0d64321a66f1cf1/satmut_utils-1.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-b2qi6d5s'
2023-06-28T22:46:35,956   Created temporary directory: /tmp/pip-build-env-t2amo9i_
2023-06-28T22:46:35,977   Installing build dependencies: started
2023-06-28T22:46:35,979   Running command pip subprocess to install build dependencies
2023-06-28T22:46:38,695   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-06-28T22:46:39,467   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-28T22:46:43,373   Collecting setuptools>=59
2023-06-28T22:46:43,566     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB)
2023-06-28T22:46:44,193   Collecting wheel
2023-06-28T22:46:44,232     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-06-28T22:46:49,209   Installing collected packages: wheel, setuptools
2023-06-28T22:46:49,670     Creating /tmp/pip-build-env-t2amo9i_/overlay/bin
2023-06-28T22:46:49,675     changing mode of /tmp/pip-build-env-t2amo9i_/overlay/bin/wheel to 755
2023-06-28T22:46:53,936   Successfully installed setuptools-68.0.0 wheel-0.40.0
2023-06-28T22:46:54,386   Installing build dependencies: finished with status 'done'
2023-06-28T22:46:54,398   Getting requirements to build wheel: started
2023-06-28T22:46:54,400   Running command Getting requirements to build wheel
2023-06-28T22:46:56,008   running egg_info
2023-06-28T22:46:56,025   writing src/satmut_utils.egg-info/PKG-INFO
2023-06-28T22:46:56,030   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2023-06-28T22:46:56,034   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2023-06-28T22:46:56,038   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2023-06-28T22:46:56,091   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-06-28T22:46:56,099   reading manifest template 'MANIFEST.in'
2023-06-28T22:46:56,108   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-06-28T22:46:56,108   adding license file 'LICENSE.txt'
2023-06-28T22:46:56,122   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-06-28T22:46:56,237   Getting requirements to build wheel: finished with status 'done'
2023-06-28T22:46:56,257   Created temporary directory: /tmp/pip-modern-metadata-d714b1o6
2023-06-28T22:46:56,263   Preparing metadata (pyproject.toml): started
2023-06-28T22:46:56,266   Running command Preparing metadata (pyproject.toml)
2023-06-28T22:46:57,616   running dist_info
2023-06-28T22:46:57,663   creating /tmp/pip-modern-metadata-d714b1o6/satmut_utils.egg-info
2023-06-28T22:46:57,673   writing /tmp/pip-modern-metadata-d714b1o6/satmut_utils.egg-info/PKG-INFO
2023-06-28T22:46:57,679   writing dependency_links to /tmp/pip-modern-metadata-d714b1o6/satmut_utils.egg-info/dependency_links.txt
2023-06-28T22:46:57,684   writing entry points to /tmp/pip-modern-metadata-d714b1o6/satmut_utils.egg-info/entry_points.txt
2023-06-28T22:46:57,687   writing top-level names to /tmp/pip-modern-metadata-d714b1o6/satmut_utils.egg-info/top_level.txt
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2023-06-28T22:46:57,751   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
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2023-06-28T22:46:57,762   writing manifest file '/tmp/pip-modern-metadata-d714b1o6/satmut_utils.egg-info/SOURCES.txt'
2023-06-28T22:46:57,764   creating '/tmp/pip-modern-metadata-d714b1o6/satmut_utils-1.0.4.dist-info'
2023-06-28T22:46:58,070   Preparing metadata (pyproject.toml): finished with status 'done'
2023-06-28T22:46:58,087   Source in /tmp/pip-wheel-xp1ynub0/satmut-utils_be6b758f9c6749f0b9db9613f42bd204 has version 1.0.4, which satisfies requirement satmut-utils==1.0.4 from https://files.pythonhosted.org/packages/af/18/b40883e3aafdf867c3bc41141a21857eb93526b46a6fd0d64321a66f1cf1/satmut_utils-1.0.4.tar.gz
2023-06-28T22:46:58,089   Removed satmut-utils==1.0.4 from https://files.pythonhosted.org/packages/af/18/b40883e3aafdf867c3bc41141a21857eb93526b46a6fd0d64321a66f1cf1/satmut_utils-1.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-b2qi6d5s'
2023-06-28T22:46:58,103 Created temporary directory: /tmp/pip-unpack-mqbma8az
2023-06-28T22:46:58,105 Building wheels for collected packages: satmut-utils
2023-06-28T22:46:58,113   Created temporary directory: /tmp/pip-wheel-vj7moog9
2023-06-28T22:46:58,114   Destination directory: /tmp/pip-wheel-vj7moog9
2023-06-28T22:46:58,119   Building wheel for satmut-utils (pyproject.toml): started
2023-06-28T22:46:58,121   Running command Building wheel for satmut-utils (pyproject.toml)
2023-06-28T22:46:59,581   running bdist_wheel
2023-06-28T22:46:59,656   running build
2023-06-28T22:46:59,657   running build_py
2023-06-28T22:46:59,673   creating build
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2023-06-28T22:46:59,678   copying src/tests/__init__.py -> build/lib/tests
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2023-06-28T22:46:59,697   creating build/lib/analysis
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2023-06-28T22:46:59,735   copying src/analysis/read_editor.py -> build/lib/analysis
2023-06-28T22:46:59,742   creating build/lib/satmut_utils
2023-06-28T22:46:59,744   copying src/satmut_utils/__init__.py -> build/lib/satmut_utils
2023-06-28T22:46:59,747   copying src/satmut_utils/satmut_utils.py -> build/lib/satmut_utils
2023-06-28T22:46:59,753   copying src/satmut_utils/definitions.py -> build/lib/satmut_utils
2023-06-28T22:46:59,758   creating build/lib/core_utils
2023-06-28T22:46:59,760   copying src/core_utils/feature_file_utils.py -> build/lib/core_utils
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2023-06-28T22:46:59,781   creating build/lib/tests/analysis
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2023-06-28T22:46:59,823   creating build/lib/tests/test_data
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2023-06-28T22:46:59,830   creating build/lib/tests/core_utils
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2023-06-28T22:46:59,846   running egg_info
2023-06-28T22:46:59,893   writing src/satmut_utils.egg-info/PKG-INFO
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2023-06-28T22:47:01,063   copying src/tests/test_data/test_preprocess.bam -> build/lib/tests/test_data
2023-06-28T22:47:01,068   copying src/tests/test_data/test_preprocess.bam.bai -> build/lib/tests/test_data
2023-06-28T22:47:01,072   copying src/tests/test_data/test_preprocess.sam -> build/lib/tests/test_data
2023-06-28T22:47:01,077   copying src/tests/test_data/test_preprocess.sort.bam -> build/lib/tests/test_data
2023-06-28T22:47:01,080   copying src/tests/test_data/test_preprocess.sort.bam.bai -> build/lib/tests/test_data
2023-06-28T22:47:01,126   installing to build/bdist.linux-armv7l/wheel
2023-06-28T22:47:01,127   running install
2023-06-28T22:47:01,186   running install_lib
2023-06-28T22:47:01,201   creating build/bdist.linux-armv7l
2023-06-28T22:47:01,202   creating build/bdist.linux-armv7l/wheel
2023-06-28T22:47:01,205   creating build/bdist.linux-armv7l/wheel/tests
2023-06-28T22:47:01,207   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2023-06-28T22:47:01,211   creating build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,213   copying build/lib/tests/analysis/test_aligners.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,217   copying build/lib/tests/analysis/test_read_preprocessor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,225   copying build/lib/tests/analysis/test_variant_caller.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,231   copying build/lib/tests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,234   copying build/lib/tests/analysis/test_read_editor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,241   copying build/lib/tests/analysis/test_coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,246   copying build/lib/tests/analysis/test_seq_utils.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,250   copying build/lib/tests/analysis/test_references.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-06-28T22:47:01,257   creating build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,258   copying build/lib/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,262   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,265   copying build/lib/tests/test_data/CBS_sim.vcf -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,269   copying build/lib/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,272   copying build/lib/tests/test_data/test_preprocess.sort.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,275   copying build/lib/tests/test_data/test_preprocess.sort.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,279   copying build/lib/tests/test_data/CBS_pEZY3_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,282   copying build/lib/tests/test_data/CBS_pEZY3.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,286   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,503   copying build/lib/tests/test_data/CBS.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,507   copying build/lib/tests/test_data/CBS_pEZY3.fa.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,838   copying build/lib/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,841   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,844   copying build/lib/tests/test_data/CBS_sim.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,849   copying build/lib/tests/test_data/CBS_sim.R2.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,852   copying build/lib/tests/test_data/CBS_pEZY3.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,856   copying build/lib/tests/test_data/CBS_pEZY3.fa.3.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,860   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,864   copying build/lib/tests/test_data/CBS_pEZY3.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,868   copying build/lib/tests/test_data/CBS_pEZY3.fa.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,872   copying build/lib/tests/test_data/CBS_pEZY3.fa.4.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,875   copying build/lib/tests/test_data/test_preprocess.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,879   copying build/lib/tests/test_data/CBS.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,883   copying build/lib/tests/test_data/CBS_pEZY3_targets.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,887   copying build/lib/tests/test_data/PKNOX1.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,891   copying build/lib/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:01,894   copying build/lib/tests/test_data/GRCh38.chr21.fa.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:02,480   copying build/lib/tests/test_data/CBS_sim.R1.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:02,483   copying build/lib/tests/test_data/CBS_sim_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:02,487   copying build/lib/tests/test_data/test_preprocess.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:02,491   copying build/lib/tests/test_data/gencode.v29.annotation.gtf -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:02,500   copying build/lib/tests/test_data/test_preprocess.sam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:02,505   copying build/lib/tests/test_data/CBS_sim.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-06-28T22:47:02,510   creating build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-28T22:47:02,513   copying build/lib/tests/core_utils/test_string_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-28T22:47:02,517   copying build/lib/tests/core_utils/test_feature_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-28T22:47:02,523   copying build/lib/tests/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-28T22:47:02,525   copying build/lib/tests/core_utils/test_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-06-28T22:47:02,530   creating build/bdist.linux-armv7l/wheel/scripts
2023-06-28T22:47:02,532   copying build/lib/scripts/run_bowtie2_aligner.py -> build/bdist.linux-armv7l/wheel/scripts
2023-06-28T22:47:02,536   copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts
2023-06-28T22:47:02,539   copying build/lib/scripts/run_fastq_preprocessor.py -> build/bdist.linux-armv7l/wheel/scripts
2023-06-28T22:47:02,544   creating build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,546   copying build/lib/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,549   copying build/lib/analysis/variant_caller.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,556   copying build/lib/analysis/references.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,561   copying build/lib/analysis/aligners.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,565   copying build/lib/analysis/read_preprocessor.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,573   copying build/lib/analysis/seq_utils.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,579   copying build/lib/analysis/coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,585   copying build/lib/analysis/read_editor.py -> build/bdist.linux-armv7l/wheel/analysis
2023-06-28T22:47:02,592   creating build/bdist.linux-armv7l/wheel/satmut_utils
2023-06-28T22:47:02,594   copying build/lib/satmut_utils/__init__.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-06-28T22:47:02,597   copying build/lib/satmut_utils/satmut_utils.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-06-28T22:47:02,603   copying build/lib/satmut_utils/definitions.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-06-28T22:47:02,608   creating build/bdist.linux-armv7l/wheel/core_utils
2023-06-28T22:47:02,610   copying build/lib/core_utils/feature_file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-28T22:47:02,614   copying build/lib/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-28T22:47:02,617   copying build/lib/core_utils/string_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-28T22:47:02,621   copying build/lib/core_utils/file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-28T22:47:02,624   copying build/lib/core_utils/vcf_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-06-28T22:47:02,630   running install_egg_info
2023-06-28T22:47:02,655   Copying src/satmut_utils.egg-info to build/bdist.linux-armv7l/wheel/satmut_utils-1.0.4-py3.7.egg-info
2023-06-28T22:47:02,678   running install_scripts
2023-06-28T22:47:02,710   creating build/bdist.linux-armv7l/wheel/satmut_utils-1.0.4.dist-info/WHEEL
2023-06-28T22:47:02,715   creating '/tmp/pip-wheel-vj7moog9/.tmp-ewubsed5/satmut_utils-1.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-06-28T22:47:02,720   adding 'analysis/__init__.py'
2023-06-28T22:47:02,724   adding 'analysis/aligners.py'
2023-06-28T22:47:02,732   adding 'analysis/coordinate_mapper.py'
2023-06-28T22:47:02,744   adding 'analysis/read_editor.py'
2023-06-28T22:47:02,767   adding 'analysis/read_preprocessor.py'
2023-06-28T22:47:02,772   adding 'analysis/references.py'
2023-06-28T22:47:02,779   adding 'analysis/seq_utils.py'
2023-06-28T22:47:02,794   adding 'analysis/variant_caller.py'
2023-06-28T22:47:02,799   adding 'core_utils/__init__.py'
2023-06-28T22:47:02,803   adding 'core_utils/feature_file_utils.py'
2023-06-28T22:47:02,806   adding 'core_utils/file_utils.py'
2023-06-28T22:47:02,809   adding 'core_utils/string_utils.py'
2023-06-28T22:47:02,817   adding 'core_utils/vcf_utils.py'
2023-06-28T22:47:02,821   adding 'satmut_utils/__init__.py'
2023-06-28T22:47:02,824   adding 'satmut_utils/definitions.py'
2023-06-28T22:47:02,832   adding 'satmut_utils/satmut_utils.py'
2023-06-28T22:47:02,839   adding 'scripts/__init__.py'
2023-06-28T22:47:02,842   adding 'scripts/run_bowtie2_aligner.py'
2023-06-28T22:47:02,845   adding 'scripts/run_fastq_preprocessor.py'
2023-06-28T22:47:02,848   adding 'tests/__init__.py'
2023-06-28T22:47:02,852   adding 'tests/analysis/__init__.py'
2023-06-28T22:47:02,855   adding 'tests/analysis/test_aligners.py'
2023-06-28T22:47:02,859   adding 'tests/analysis/test_coordinate_mapper.py'
2023-06-28T22:47:02,867   adding 'tests/analysis/test_read_editor.py'
2023-06-28T22:47:02,880   adding 'tests/analysis/test_read_preprocessor.py'
2023-06-28T22:47:02,885   adding 'tests/analysis/test_references.py'
2023-06-28T22:47:02,890   adding 'tests/analysis/test_seq_utils.py'
2023-06-28T22:47:02,899   adding 'tests/analysis/test_variant_caller.py'
2023-06-28T22:47:02,903   adding 'tests/core_utils/__init__.py'
2023-06-28T22:47:02,906   adding 'tests/core_utils/test_feature_file_utils.py'
2023-06-28T22:47:02,909   adding 'tests/core_utils/test_file_utils.py'
2023-06-28T22:47:02,912   adding 'tests/core_utils/test_string_utils.py'
2023-06-28T22:47:02,917   adding 'tests/test_data/CBS.fa'
2023-06-28T22:47:02,921   adding 'tests/test_data/CBS.gff'
2023-06-28T22:47:02,929   adding 'tests/test_data/CBS_pEZY3.fa'
2023-06-28T22:47:03,167   adding 'tests/test_data/CBS_pEZY3.fa.1.bt2'
2023-06-28T22:47:03,254   adding 'tests/test_data/CBS_pEZY3.fa.2.bt2'
2023-06-28T22:47:03,257   adding 'tests/test_data/CBS_pEZY3.fa.3.bt2'
2023-06-28T22:47:03,260   adding 'tests/test_data/CBS_pEZY3.fa.4.bt2'
2023-06-28T22:47:03,262   adding 'tests/test_data/CBS_pEZY3.fa.fai'
2023-06-28T22:47:03,500   adding 'tests/test_data/CBS_pEZY3.fa.rev.1.bt2'
2023-06-28T22:47:03,589   adding 'tests/test_data/CBS_pEZY3.fa.rev.2.bt2'
2023-06-28T22:47:03,593   adding 'tests/test_data/CBS_pEZY3.gff'
2023-06-28T22:47:03,596   adding 'tests/test_data/CBS_pEZY3_primers.bed'
2023-06-28T22:47:03,598   adding 'tests/test_data/CBS_pEZY3_targets.bed'
2023-06-28T22:47:03,601   adding 'tests/test_data/CBS_sim.R1.fq.gz'
2023-06-28T22:47:03,604   adding 'tests/test_data/CBS_sim.R2.fq.gz'
2023-06-28T22:47:03,607   adding 'tests/test_data/CBS_sim.bam'
2023-06-28T22:47:03,610   adding 'tests/test_data/CBS_sim.bam.bai'
2023-06-28T22:47:03,612   adding 'tests/test_data/CBS_sim.vcf'
2023-06-28T22:47:03,615   adding 'tests/test_data/CBS_sim_primers.bed'
2023-06-28T22:47:06,845   adding 'tests/test_data/GRCh38.chr21.fa.gz'
2023-06-28T22:47:07,088   adding 'tests/test_data/PKNOX1.fa'
2023-06-28T22:47:07,090   adding 'tests/test_data/__init__.py'
2023-06-28T22:47:07,100   adding 'tests/test_data/appris_human_24_01_2019_selected.fa'
2023-06-28T22:47:07,103   adding 'tests/test_data/appris_human_24_01_2019_selected.fa.fai'
2023-06-28T22:47:07,106   adding 'tests/test_data/appris_human_v1_actual_regions_contigs.txt'
2023-06-28T22:47:07,109   adding 'tests/test_data/appris_human_v1_actual_regions_gene_ids.txt'
2023-06-28T22:47:07,111   adding 'tests/test_data/appris_human_v1_actual_regions_trx_ids.txt'
2023-06-28T22:47:07,116   adding 'tests/test_data/gencode.v29.annotation.gtf'
2023-06-28T22:47:07,120   adding 'tests/test_data/test_preprocess.bam'
2023-06-28T22:47:07,123   adding 'tests/test_data/test_preprocess.bam.bai'
2023-06-28T22:47:07,128   adding 'tests/test_data/test_preprocess.sam'
2023-06-28T22:47:07,132   adding 'tests/test_data/test_preprocess.sort.bam'
2023-06-28T22:47:07,135   adding 'tests/test_data/test_preprocess.sort.bam.bai'
2023-06-28T22:47:07,150   adding 'satmut_utils-1.0.4.dist-info/LICENSE.txt'
2023-06-28T22:47:07,154   adding 'satmut_utils-1.0.4.dist-info/METADATA'
2023-06-28T22:47:07,157   adding 'satmut_utils-1.0.4.dist-info/WHEEL'
2023-06-28T22:47:07,159   adding 'satmut_utils-1.0.4.dist-info/entry_points.txt'
2023-06-28T22:47:07,161   adding 'satmut_utils-1.0.4.dist-info/top_level.txt'
2023-06-28T22:47:07,164   adding 'satmut_utils-1.0.4.dist-info/RECORD'
2023-06-28T22:47:07,622   removing build/bdist.linux-armv7l/wheel
2023-06-28T22:47:07,821   Building wheel for satmut-utils (pyproject.toml): finished with status 'done'
2023-06-28T22:47:08,522   Created wheel for satmut-utils: filename=satmut_utils-1.0.4-py3-none-any.whl size=11988458 sha256=323a13eb1dd75261586bd6c887dd223a40587742ca7aed6cdd40cbae05856a6f
2023-06-28T22:47:08,524   Stored in directory: /tmp/pip-ephem-wheel-cache-ky8gdoky/wheels/52/5d/dc/1fe608dfb1b0c90a3e596a72cae86da286d288cfe35fed39f6
2023-06-28T22:47:08,572 Successfully built satmut-utils
2023-06-28T22:47:09,487 Removed build tracker: '/tmp/pip-build-tracker-b2qi6d5s'