2023-06-29T20:52:27,787 Created temporary directory: /tmp/pip-build-tracker-d_1kikcx 2023-06-29T20:52:27,790 Initialized build tracking at /tmp/pip-build-tracker-d_1kikcx 2023-06-29T20:52:27,791 Created build tracker: /tmp/pip-build-tracker-d_1kikcx 2023-06-29T20:52:27,791 Entered build tracker: /tmp/pip-build-tracker-d_1kikcx 2023-06-29T20:52:27,792 Created temporary directory: /tmp/pip-wheel-id6r1it8 2023-06-29T20:52:27,801 Created temporary directory: /tmp/pip-ephem-wheel-cache-3ex493xk 2023-06-29T20:52:27,854 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-29T20:52:27,862 2 location(s) to search for versions of pdm-utils: 2023-06-29T20:52:27,862 * https://pypi.org/simple/pdm-utils/ 2023-06-29T20:52:27,862 * https://www.piwheels.org/simple/pdm-utils/ 2023-06-29T20:52:27,863 Fetching project page and analyzing links: https://pypi.org/simple/pdm-utils/ 2023-06-29T20:52:27,864 Getting page https://pypi.org/simple/pdm-utils/ 2023-06-29T20:52:27,869 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https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.15-py3-none-any.whl#sha256=40da7a867e64fa0fc36fd8f912184815c7b5012a2ee928df4ae6b6cd3d56b32a (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-29T20:52:28,642 Skipping link: No binaries permitted for pdm-utils: https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.14-py3-none-any.whl#sha256=f86fa14dbc9c2d133d680ffac1290d392cd3504630d5e92d3a6074aae4b0c2a0 (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-29T20:52:28,642 Skipping link: No binaries permitted for pdm-utils: https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.13-py3-none-any.whl#sha256=bf5eaebb76fe285abad097cec0ed5d6a433be0879ffeeb7ef61c00a364520dfb (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-29T20:52:28,643 Skipping link: No binaries permitted for pdm-utils: 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https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.6-py3-none-any.whl#sha256=acbb8f44f33136bdef3034415a2dbce4ae8202a76b8fa1ffbd6f97f3f1195d00 (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-29T20:52:28,645 Skipping link: No binaries permitted for pdm-utils: https://www.piwheels.org/simple/pdm-utils/pdm_utils-0.0.5-py3-none-any.whl#sha256=9f63db49a8a1ec14c179e96418b2b1b9fe232c5b883952b71e6640584c9feaac (from https://www.piwheels.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-29T20:52:28,645 Skipping link: not a file: https://www.piwheels.org/simple/pdm-utils/ 2023-06-29T20:52:28,646 Skipping link: not a file: https://pypi.org/simple/pdm-utils/ 2023-06-29T20:52:28,708 Given no hashes to check 1 links for project 'pdm-utils': discarding no candidates 2023-06-29T20:52:28,740 Collecting pdm-utils==1.1.2 2023-06-29T20:52:28,745 Created temporary directory: /tmp/pip-unpack-45u4o4wp 2023-06-29T20:52:29,014 Downloading pdm_utils-1.1.2.tar.gz (250 kB) 2023-06-29T20:52:29,595 Added pdm-utils==1.1.2 from https://files.pythonhosted.org/packages/d8/68/de145d0e376f505a7bd97a6f9d4fc19c1374dbb120c0f21b2141fcef88c7/pdm_utils-1.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-d_1kikcx' 2023-06-29T20:52:29,604 Created temporary directory: /tmp/pip-build-env-ir3ju88u 2023-06-29T20:52:29,624 Installing build dependencies: started 2023-06-29T20:52:29,626 Running command pip subprocess to install build dependencies 2023-06-29T20:52:32,364 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-06-29T20:52:33,137 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-29T20:52:37,084 Collecting setuptools 2023-06-29T20:52:37,275 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-06-29T20:52:37,905 Collecting wheel 2023-06-29T20:52:37,943 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-06-29T20:52:42,896 Installing collected packages: wheel, setuptools 2023-06-29T20:52:43,347 Creating /tmp/pip-build-env-ir3ju88u/overlay/bin 2023-06-29T20:52:43,353 changing mode of /tmp/pip-build-env-ir3ju88u/overlay/bin/wheel to 755 2023-06-29T20:52:47,665 Successfully installed setuptools-68.0.0 wheel-0.40.0 2023-06-29T20:52:48,115 Installing build dependencies: finished with status 'done' 2023-06-29T20:52:48,126 Getting requirements to build wheel: started 2023-06-29T20:52:48,129 Running command Getting requirements to build wheel 2023-06-29T20:52:50,571 running egg_info 2023-06-29T20:52:50,581 writing src/pdm_utils.egg-info/PKG-INFO 2023-06-29T20:52:50,585 writing dependency_links to src/pdm_utils.egg-info/dependency_links.txt 2023-06-29T20:52:50,589 writing entry points to src/pdm_utils.egg-info/entry_points.txt 2023-06-29T20:52:50,592 writing requirements to src/pdm_utils.egg-info/requires.txt 2023-06-29T20:52:50,595 writing top-level names to src/pdm_utils.egg-info/top_level.txt 2023-06-29T20:52:50,653 reading manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T20:52:50,662 adding license file 'LICENSE' 2023-06-29T20:52:50,676 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T20:52:50,793 Getting requirements to build wheel: finished with status 'done' 2023-06-29T20:52:50,815 Created temporary directory: /tmp/pip-modern-metadata-nfcq7f8l 2023-06-29T20:52:50,821 Preparing metadata (pyproject.toml): started 2023-06-29T20:52:50,823 Running command Preparing metadata (pyproject.toml) 2023-06-29T20:52:52,147 running dist_info 2023-06-29T20:52:52,186 creating /tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info 2023-06-29T20:52:52,195 writing /tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info/PKG-INFO 2023-06-29T20:52:52,200 writing dependency_links to /tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info/dependency_links.txt 2023-06-29T20:52:52,204 writing entry points to /tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info/entry_points.txt 2023-06-29T20:52:52,208 writing requirements to /tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info/requires.txt 2023-06-29T20:52:52,210 writing top-level names to /tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info/top_level.txt 2023-06-29T20:52:52,213 writing manifest file '/tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T20:52:52,269 reading manifest file '/tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T20:52:52,273 adding license file 'LICENSE' 2023-06-29T20:52:52,285 writing manifest file '/tmp/pip-modern-metadata-nfcq7f8l/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T20:52:52,287 creating '/tmp/pip-modern-metadata-nfcq7f8l/pdm_utils-1.1.2.dist-info' 2023-06-29T20:52:52,621 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-29T20:52:52,637 Source in /tmp/pip-wheel-id6r1it8/pdm-utils_96494485086147328ea2a068ed6cf7ee has version 1.1.2, which satisfies requirement pdm-utils==1.1.2 from https://files.pythonhosted.org/packages/d8/68/de145d0e376f505a7bd97a6f9d4fc19c1374dbb120c0f21b2141fcef88c7/pdm_utils-1.1.2.tar.gz 2023-06-29T20:52:52,639 Removed pdm-utils==1.1.2 from https://files.pythonhosted.org/packages/d8/68/de145d0e376f505a7bd97a6f9d4fc19c1374dbb120c0f21b2141fcef88c7/pdm_utils-1.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-d_1kikcx' 2023-06-29T20:52:52,654 Created temporary directory: /tmp/pip-unpack-sirf36nl 2023-06-29T20:52:52,655 Building wheels for collected packages: pdm-utils 2023-06-29T20:52:52,665 Created temporary directory: /tmp/pip-wheel-hh3jg38u 2023-06-29T20:52:52,666 Destination directory: /tmp/pip-wheel-hh3jg38u 2023-06-29T20:52:52,671 Building wheel for pdm-utils (pyproject.toml): started 2023-06-29T20:52:52,673 Running command Building wheel for pdm-utils (pyproject.toml) 2023-06-29T20:52:54,054 running bdist_wheel 2023-06-29T20:52:54,125 running build 2023-06-29T20:52:54,126 running build_py 2023-06-29T20:52:54,143 creating build 2023-06-29T20:52:54,144 creating build/lib 2023-06-29T20:52:54,145 creating build/lib/pdm_utils 2023-06-29T20:52:54,147 copying src/pdm_utils/__main__.py -> build/lib/pdm_utils 2023-06-29T20:52:54,151 copying src/pdm_utils/run.py -> build/lib/pdm_utils 2023-06-29T20:52:54,154 copying src/pdm_utils/__init__.py -> build/lib/pdm_utils 2023-06-29T20:52:54,159 creating build/lib/pdm_utils/constants 2023-06-29T20:52:54,161 copying src/pdm_utils/constants/db_schema_0.py -> build/lib/pdm_utils/constants 2023-06-29T20:52:54,165 copying src/pdm_utils/constants/constants.py -> build/lib/pdm_utils/constants 2023-06-29T20:52:54,169 copying src/pdm_utils/constants/eval_descriptions.py -> build/lib/pdm_utils/constants 2023-06-29T20:52:54,174 copying src/pdm_utils/constants/schema_conversions.py -> build/lib/pdm_utils/constants 2023-06-29T20:52:54,180 copying src/pdm_utils/constants/__init__.py -> build/lib/pdm_utils/constants 2023-06-29T20:52:54,187 creating build/lib/pdm_utils/functions 2023-06-29T20:52:54,188 copying src/pdm_utils/functions/configfile.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,192 copying src/pdm_utils/functions/fileio.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,197 copying src/pdm_utils/functions/mysqldb.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,202 copying src/pdm_utils/functions/flat_files.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,207 copying src/pdm_utils/functions/pham_alignment.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,212 copying src/pdm_utils/functions/pipeline_shells.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,216 copying src/pdm_utils/functions/url_basic.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,221 copying src/pdm_utils/functions/subprocess.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,224 copying src/pdm_utils/functions/tickets.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,228 copying src/pdm_utils/functions/ncbi.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,233 copying src/pdm_utils/functions/basic.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,239 copying src/pdm_utils/functions/pipelines_basic.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,244 copying src/pdm_utils/functions/annotation.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,249 copying src/pdm_utils/functions/rpsblast.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,254 copying src/pdm_utils/functions/server.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,258 copying src/pdm_utils/functions/phagesdb.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,263 copying src/pdm_utils/functions/parsing.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,268 copying src/pdm_utils/functions/mysqldb_basic.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,273 copying src/pdm_utils/functions/querying.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,280 copying src/pdm_utils/functions/eval_modes.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,285 copying src/pdm_utils/functions/cartography.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,289 copying src/pdm_utils/functions/multithread.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,294 copying src/pdm_utils/functions/__init__.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,298 copying src/pdm_utils/functions/deeptmhmm.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,302 copying src/pdm_utils/functions/fasta.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,306 copying src/pdm_utils/functions/multiprocess.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,310 copying src/pdm_utils/functions/phameration.py -> build/lib/pdm_utils/functions 2023-06-29T20:52:54,318 creating build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,321 copying src/pdm_utils/pipelines/compare_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,329 copying src/pdm_utils/pipelines/convert_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,334 copying src/pdm_utils/pipelines/get_gb_records.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,338 copying src/pdm_utils/pipelines/find_domains.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,344 copying src/pdm_utils/pipelines/push_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,349 copying src/pdm_utils/pipelines/pham_finder.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,354 copying src/pdm_utils/pipelines/cluster_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,360 copying src/pdm_utils/pipelines/import_genome.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,369 copying src/pdm_utils/pipelines/freeze_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,373 copying src/pdm_utils/pipelines/find_transmembrane.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,379 copying src/pdm_utils/pipelines/update_field.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,383 copying src/pdm_utils/pipelines/revise.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,390 copying src/pdm_utils/pipelines/get_data.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,397 copying src/pdm_utils/pipelines/export_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,404 copying src/pdm_utils/pipelines/pham_review.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,410 copying src/pdm_utils/pipelines/phamerate.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,414 copying src/pdm_utils/pipelines/__init__.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,417 copying src/pdm_utils/pipelines/find_membrane.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,421 copying src/pdm_utils/pipelines/get_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T20:52:54,429 creating build/lib/pdm_utils/classes 2023-06-29T20:52:54,431 copying src/pdm_utils/classes/fileio.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,436 copying src/pdm_utils/classes/trnascansehandler.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,441 copying src/pdm_utils/classes/ticket.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,446 copying src/pdm_utils/classes/aragornhandler.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,451 copying src/pdm_utils/classes/progress.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,455 copying src/pdm_utils/classes/cdspair.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,459 copying src/pdm_utils/classes/alchemyhandler.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,463 copying src/pdm_utils/classes/genomepair.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,467 copying src/pdm_utils/classes/trna.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,474 copying src/pdm_utils/classes/genometriad.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,479 copying src/pdm_utils/classes/evaluation.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,482 copying src/pdm_utils/classes/dbcomparesummary.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,487 copying src/pdm_utils/classes/genome.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,493 copying src/pdm_utils/classes/bundle.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,497 copying src/pdm_utils/classes/randomfieldupdatehandler.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,502 copying src/pdm_utils/classes/tmrna.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,507 copying src/pdm_utils/classes/error.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,511 copying src/pdm_utils/classes/source.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,515 copying src/pdm_utils/classes/filter.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,520 copying src/pdm_utils/classes/__init__.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,522 copying src/pdm_utils/classes/cds.py -> build/lib/pdm_utils/classes 2023-06-29T20:52:54,577 installing to build/bdist.linux-armv7l/wheel 2023-06-29T20:52:54,578 running install 2023-06-29T20:52:54,640 running install_lib 2023-06-29T20:52:54,656 creating build/bdist.linux-armv7l 2023-06-29T20:52:54,656 creating build/bdist.linux-armv7l/wheel 2023-06-29T20:52:54,660 creating build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-29T20:52:54,663 creating build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T20:52:54,665 copying build/lib/pdm_utils/constants/db_schema_0.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T20:52:54,671 copying build/lib/pdm_utils/constants/constants.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T20:52:54,675 copying build/lib/pdm_utils/constants/eval_descriptions.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T20:52:54,680 copying build/lib/pdm_utils/constants/schema_conversions.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T20:52:54,687 copying build/lib/pdm_utils/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T20:52:54,692 creating build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,694 copying build/lib/pdm_utils/functions/configfile.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,698 copying build/lib/pdm_utils/functions/fileio.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,703 copying build/lib/pdm_utils/functions/mysqldb.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,708 copying build/lib/pdm_utils/functions/flat_files.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,714 copying build/lib/pdm_utils/functions/pham_alignment.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,719 copying build/lib/pdm_utils/functions/pipeline_shells.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,723 copying build/lib/pdm_utils/functions/url_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,728 copying build/lib/pdm_utils/functions/subprocess.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,732 copying build/lib/pdm_utils/functions/tickets.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,736 copying build/lib/pdm_utils/functions/ncbi.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,741 copying build/lib/pdm_utils/functions/basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,747 copying build/lib/pdm_utils/functions/pipelines_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,752 copying build/lib/pdm_utils/functions/annotation.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,756 copying build/lib/pdm_utils/functions/rpsblast.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,761 copying build/lib/pdm_utils/functions/server.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,766 copying build/lib/pdm_utils/functions/phagesdb.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,772 copying build/lib/pdm_utils/functions/parsing.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,778 copying build/lib/pdm_utils/functions/mysqldb_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,784 copying build/lib/pdm_utils/functions/querying.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,791 copying build/lib/pdm_utils/functions/eval_modes.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,796 copying build/lib/pdm_utils/functions/cartography.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,800 copying build/lib/pdm_utils/functions/multithread.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,805 copying build/lib/pdm_utils/functions/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,810 copying build/lib/pdm_utils/functions/deeptmhmm.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,815 copying build/lib/pdm_utils/functions/fasta.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,822 copying build/lib/pdm_utils/functions/multiprocess.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,826 copying build/lib/pdm_utils/functions/phameration.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T20:52:54,831 copying build/lib/pdm_utils/__main__.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-29T20:52:54,835 copying build/lib/pdm_utils/run.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-29T20:52:54,840 copying build/lib/pdm_utils/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-29T20:52:54,845 creating build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,848 copying build/lib/pdm_utils/pipelines/compare_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,858 copying build/lib/pdm_utils/pipelines/convert_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,863 copying build/lib/pdm_utils/pipelines/get_gb_records.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,868 copying build/lib/pdm_utils/pipelines/find_domains.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,873 copying build/lib/pdm_utils/pipelines/push_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,878 copying build/lib/pdm_utils/pipelines/pham_finder.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,883 copying build/lib/pdm_utils/pipelines/cluster_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,889 copying build/lib/pdm_utils/pipelines/import_genome.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,898 copying build/lib/pdm_utils/pipelines/freeze_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,903 copying build/lib/pdm_utils/pipelines/find_transmembrane.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,911 copying build/lib/pdm_utils/pipelines/update_field.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,916 copying build/lib/pdm_utils/pipelines/revise.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,924 copying build/lib/pdm_utils/pipelines/get_data.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,931 copying build/lib/pdm_utils/pipelines/export_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,937 copying build/lib/pdm_utils/pipelines/pham_review.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,942 copying build/lib/pdm_utils/pipelines/phamerate.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,946 copying build/lib/pdm_utils/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,949 copying build/lib/pdm_utils/pipelines/find_membrane.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,953 copying build/lib/pdm_utils/pipelines/get_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T20:52:54,959 creating build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:54,962 copying build/lib/pdm_utils/classes/fileio.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:54,966 copying build/lib/pdm_utils/classes/trnascansehandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:54,970 copying build/lib/pdm_utils/classes/ticket.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:54,975 copying build/lib/pdm_utils/classes/aragornhandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:54,980 copying build/lib/pdm_utils/classes/progress.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:54,984 copying build/lib/pdm_utils/classes/cdspair.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:54,989 copying build/lib/pdm_utils/classes/alchemyhandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:54,995 copying build/lib/pdm_utils/classes/genomepair.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,000 copying build/lib/pdm_utils/classes/trna.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,009 copying build/lib/pdm_utils/classes/genometriad.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,015 copying build/lib/pdm_utils/classes/evaluation.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,018 copying build/lib/pdm_utils/classes/dbcomparesummary.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,023 copying build/lib/pdm_utils/classes/genome.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,030 copying build/lib/pdm_utils/classes/bundle.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,035 copying build/lib/pdm_utils/classes/randomfieldupdatehandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,039 copying build/lib/pdm_utils/classes/tmrna.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,046 copying build/lib/pdm_utils/classes/error.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,050 copying build/lib/pdm_utils/classes/source.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,054 copying build/lib/pdm_utils/classes/filter.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,059 copying build/lib/pdm_utils/classes/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,062 copying build/lib/pdm_utils/classes/cds.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T20:52:55,068 running install_egg_info 2023-06-29T20:52:55,119 running egg_info 2023-06-29T20:52:55,128 writing src/pdm_utils.egg-info/PKG-INFO 2023-06-29T20:52:55,131 writing dependency_links to src/pdm_utils.egg-info/dependency_links.txt 2023-06-29T20:52:55,135 writing entry points to src/pdm_utils.egg-info/entry_points.txt 2023-06-29T20:52:55,138 writing requirements to src/pdm_utils.egg-info/requires.txt 2023-06-29T20:52:55,140 writing top-level names to src/pdm_utils.egg-info/top_level.txt 2023-06-29T20:52:55,171 reading manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T20:52:55,180 adding license file 'LICENSE' 2023-06-29T20:52:55,195 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T20:52:55,198 Copying src/pdm_utils.egg-info to build/bdist.linux-armv7l/wheel/pdm_utils-1.1.2-py3.7.egg-info 2023-06-29T20:52:55,221 running install_scripts 2023-06-29T20:52:55,267 creating build/bdist.linux-armv7l/wheel/pdm_utils-1.1.2.dist-info/WHEEL 2023-06-29T20:52:55,272 creating '/tmp/pip-wheel-hh3jg38u/.tmp-7rtl49hy/pdm_utils-1.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-29T20:52:55,277 adding 'pdm_utils/__init__.py' 2023-06-29T20:52:55,279 adding 'pdm_utils/__main__.py' 2023-06-29T20:52:55,282 adding 'pdm_utils/run.py' 2023-06-29T20:52:55,286 adding 'pdm_utils/classes/__init__.py' 2023-06-29T20:52:55,292 adding 'pdm_utils/classes/alchemyhandler.py' 2023-06-29T20:52:55,296 adding 'pdm_utils/classes/aragornhandler.py' 2023-06-29T20:52:55,300 adding 'pdm_utils/classes/bundle.py' 2023-06-29T20:52:55,310 adding 'pdm_utils/classes/cds.py' 2023-06-29T20:52:55,314 adding 'pdm_utils/classes/cdspair.py' 2023-06-29T20:52:55,318 adding 'pdm_utils/classes/dbcomparesummary.py' 2023-06-29T20:52:55,320 adding 'pdm_utils/classes/error.py' 2023-06-29T20:52:55,323 adding 'pdm_utils/classes/evaluation.py' 2023-06-29T20:52:55,326 adding 'pdm_utils/classes/fileio.py' 2023-06-29T20:52:55,333 adding 'pdm_utils/classes/filter.py' 2023-06-29T20:52:55,343 adding 'pdm_utils/classes/genome.py' 2023-06-29T20:52:55,347 adding 'pdm_utils/classes/genomepair.py' 2023-06-29T20:52:55,352 adding 'pdm_utils/classes/genometriad.py' 2023-06-29T20:52:55,355 adding 'pdm_utils/classes/progress.py' 2023-06-29T20:52:55,358 adding 'pdm_utils/classes/randomfieldupdatehandler.py' 2023-06-29T20:52:55,361 adding 'pdm_utils/classes/source.py' 2023-06-29T20:52:55,365 adding 'pdm_utils/classes/ticket.py' 2023-06-29T20:52:55,375 adding 'pdm_utils/classes/tmrna.py' 2023-06-29T20:52:55,390 adding 'pdm_utils/classes/trna.py' 2023-06-29T20:52:55,395 adding 'pdm_utils/classes/trnascansehandler.py' 2023-06-29T20:52:55,398 adding 'pdm_utils/constants/__init__.py' 2023-06-29T20:52:55,402 adding 'pdm_utils/constants/constants.py' 2023-06-29T20:52:55,406 adding 'pdm_utils/constants/db_schema_0.py' 2023-06-29T20:52:55,410 adding 'pdm_utils/constants/eval_descriptions.py' 2023-06-29T20:52:55,417 adding 'pdm_utils/constants/schema_conversions.py' 2023-06-29T20:52:55,422 adding 'pdm_utils/functions/__init__.py' 2023-06-29T20:52:55,425 adding 'pdm_utils/functions/annotation.py' 2023-06-29T20:52:55,439 adding 'pdm_utils/functions/basic.py' 2023-06-29T20:52:55,443 adding 'pdm_utils/functions/cartography.py' 2023-06-29T20:52:55,446 adding 'pdm_utils/functions/configfile.py' 2023-06-29T20:52:55,449 adding 'pdm_utils/functions/deeptmhmm.py' 2023-06-29T20:52:55,452 adding 'pdm_utils/functions/eval_modes.py' 2023-06-29T20:52:55,455 adding 'pdm_utils/functions/fasta.py' 2023-06-29T20:52:55,459 adding 'pdm_utils/functions/fileio.py' 2023-06-29T20:52:55,468 adding 'pdm_utils/functions/flat_files.py' 2023-06-29T20:52:55,472 adding 'pdm_utils/functions/multiprocess.py' 2023-06-29T20:52:55,475 adding 'pdm_utils/functions/multithread.py' 2023-06-29T20:52:55,482 adding 'pdm_utils/functions/mysqldb.py' 2023-06-29T20:52:55,488 adding 'pdm_utils/functions/mysqldb_basic.py' 2023-06-29T20:52:55,492 adding 'pdm_utils/functions/ncbi.py' 2023-06-29T20:52:55,496 adding 'pdm_utils/functions/parsing.py' 2023-06-29T20:52:55,501 adding 'pdm_utils/functions/phagesdb.py' 2023-06-29T20:52:55,505 adding 'pdm_utils/functions/pham_alignment.py' 2023-06-29T20:52:55,509 adding 'pdm_utils/functions/phameration.py' 2023-06-29T20:52:55,513 adding 'pdm_utils/functions/pipeline_shells.py' 2023-06-29T20:52:55,517 adding 'pdm_utils/functions/pipelines_basic.py' 2023-06-29T20:52:55,524 adding 'pdm_utils/functions/querying.py' 2023-06-29T20:52:55,528 adding 'pdm_utils/functions/rpsblast.py' 2023-06-29T20:52:55,531 adding 'pdm_utils/functions/server.py' 2023-06-29T20:52:55,534 adding 'pdm_utils/functions/subprocess.py' 2023-06-29T20:52:55,538 adding 'pdm_utils/functions/tickets.py' 2023-06-29T20:52:55,543 adding 'pdm_utils/functions/url_basic.py' 2023-06-29T20:52:55,548 adding 'pdm_utils/pipelines/__init__.py' 2023-06-29T20:52:55,555 adding 'pdm_utils/pipelines/cluster_db.py' 2023-06-29T20:52:55,572 adding 'pdm_utils/pipelines/compare_db.py' 2023-06-29T20:52:55,577 adding 'pdm_utils/pipelines/convert_db.py' 2023-06-29T20:52:55,585 adding 'pdm_utils/pipelines/export_db.py' 2023-06-29T20:52:55,592 adding 'pdm_utils/pipelines/find_domains.py' 2023-06-29T20:52:55,595 adding 'pdm_utils/pipelines/find_membrane.py' 2023-06-29T20:52:55,599 adding 'pdm_utils/pipelines/find_transmembrane.py' 2023-06-29T20:52:55,604 adding 'pdm_utils/pipelines/freeze_db.py' 2023-06-29T20:52:55,615 adding 'pdm_utils/pipelines/get_data.py' 2023-06-29T20:52:55,621 adding 'pdm_utils/pipelines/get_db.py' 2023-06-29T20:52:55,625 adding 'pdm_utils/pipelines/get_gb_records.py' 2023-06-29T20:52:55,649 adding 'pdm_utils/pipelines/import_genome.py' 2023-06-29T20:52:55,655 adding 'pdm_utils/pipelines/pham_finder.py' 2023-06-29T20:52:55,662 adding 'pdm_utils/pipelines/pham_review.py' 2023-06-29T20:52:55,667 adding 'pdm_utils/pipelines/phamerate.py' 2023-06-29T20:52:55,671 adding 'pdm_utils/pipelines/push_db.py' 2023-06-29T20:52:55,680 adding 'pdm_utils/pipelines/revise.py' 2023-06-29T20:52:55,684 adding 'pdm_utils/pipelines/update_field.py' 2023-06-29T20:52:55,701 adding 'pdm_utils-1.1.2.dist-info/LICENSE' 2023-06-29T20:52:55,704 adding 'pdm_utils-1.1.2.dist-info/METADATA' 2023-06-29T20:52:55,706 adding 'pdm_utils-1.1.2.dist-info/WHEEL' 2023-06-29T20:52:55,708 adding 'pdm_utils-1.1.2.dist-info/entry_points.txt' 2023-06-29T20:52:55,710 adding 'pdm_utils-1.1.2.dist-info/top_level.txt' 2023-06-29T20:52:55,714 adding 'pdm_utils-1.1.2.dist-info/RECORD' 2023-06-29T20:52:55,729 removing build/bdist.linux-armv7l/wheel 2023-06-29T20:52:55,906 Building wheel for pdm-utils (pyproject.toml): finished with status 'done' 2023-06-29T20:52:55,934 Created wheel for pdm-utils: filename=pdm_utils-1.1.2-py3-none-any.whl size=276153 sha256=f53606d7a0fb33023d1806316fdaa711fc1be33fe4ea2fdb95e7ceef185aa211 2023-06-29T20:52:55,937 Stored in directory: /tmp/pip-ephem-wheel-cache-3ex493xk/wheels/4e/58/84/2e8ff065e42e5c1b781bb777a110db306851e41c6076406605 2023-06-29T20:52:55,973 Successfully built pdm-utils 2023-06-29T20:52:56,008 Removed build tracker: '/tmp/pip-build-tracker-d_1kikcx'