2023-06-29T21:04:53,168 Created temporary directory: /tmp/pip-build-tracker-8mkua79d 2023-06-29T21:04:53,171 Initialized build tracking at /tmp/pip-build-tracker-8mkua79d 2023-06-29T21:04:53,171 Created build tracker: /tmp/pip-build-tracker-8mkua79d 2023-06-29T21:04:53,172 Entered build tracker: /tmp/pip-build-tracker-8mkua79d 2023-06-29T21:04:53,173 Created temporary directory: /tmp/pip-wheel-zwfct0km 2023-06-29T21:04:53,182 Created temporary directory: /tmp/pip-ephem-wheel-cache-o9iexv5l 2023-06-29T21:04:53,235 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-29T21:04:53,243 2 location(s) to search for versions of pdm-utils: 2023-06-29T21:04:53,243 * https://pypi.org/simple/pdm-utils/ 2023-06-29T21:04:53,243 * https://www.piwheels.org/simple/pdm-utils/ 2023-06-29T21:04:53,244 Fetching project page and analyzing links: https://pypi.org/simple/pdm-utils/ 2023-06-29T21:04:53,245 Getting page https://pypi.org/simple/pdm-utils/ 2023-06-29T21:04:53,249 Found index url https://pypi.org/simple/ 2023-06-29T21:04:53,371 Fetched page https://pypi.org/simple/pdm-utils/ as application/vnd.pypi.simple.v1+json 2023-06-29T21:04:53,453 Skipping link: No binaries permitted for pdm-utils: https://files.pythonhosted.org/packages/b0/d8/40955a40e8fd9ecd66beb1ff45554ecbde351b83c0b8b273344671cd824c/pdm_utils-0.0.5-py3-none-any.whl (from https://pypi.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-29T21:04:53,455 Found link https://files.pythonhosted.org/packages/c6/ff/d64135202eb0abc4a04cb7b908ed7f3ced9a3df60047427d7ddcb3d000d2/pdm_utils-0.0.5.tar.gz (from https://pypi.org/simple/pdm-utils/) (requires-python:>=3.6), version: 0.0.5 2023-06-29T21:04:53,455 Skipping link: No binaries permitted for pdm-utils: https://files.pythonhosted.org/packages/44/00/1df95a3aad81bd22ca3c3c1603cac1df58796e20168ec135756f60c8fbfe/pdm_utils-0.0.6-py3-none-any.whl (from https://pypi.org/simple/pdm-utils/) (requires-python:>=3.6) 2023-06-29T21:04:53,457 Found link 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2023-06-29T21:04:54,012 Given no hashes to check 1 links for project 'pdm-utils': discarding no candidates 2023-06-29T21:04:54,236 Collecting pdm-utils==1.1.3 2023-06-29T21:04:54,299 Created temporary directory: /tmp/pip-unpack-zdcxd8ps 2023-06-29T21:04:54,754 Downloading pdm_utils-1.1.3.tar.gz (250 kB) 2023-06-29T21:04:56,057 Added pdm-utils==1.1.3 from https://files.pythonhosted.org/packages/91/c2/9aaebbc0ef06005bdabb306e6436b057d446a1b427cf910b289a000c88f0/pdm_utils-1.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-8mkua79d' 2023-06-29T21:04:56,065 Created temporary directory: /tmp/pip-build-env-tg3q2mpm 2023-06-29T21:04:56,086 Installing build dependencies: started 2023-06-29T21:04:56,088 Running command pip subprocess to install build dependencies 2023-06-29T21:04:58,808 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-06-29T21:04:59,597 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-29T21:05:03,576 Collecting setuptools 2023-06-29T21:05:03,808 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-06-29T21:05:05,386 Collecting wheel 2023-06-29T21:05:05,428 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-06-29T21:05:10,496 Installing collected packages: wheel, setuptools 2023-06-29T21:05:10,955 Creating /tmp/pip-build-env-tg3q2mpm/overlay/bin 2023-06-29T21:05:10,960 changing mode of /tmp/pip-build-env-tg3q2mpm/overlay/bin/wheel to 755 2023-06-29T21:05:15,243 Successfully installed setuptools-68.0.0 wheel-0.40.0 2023-06-29T21:05:15,696 Installing build dependencies: finished with status 'done' 2023-06-29T21:05:15,708 Getting requirements to build wheel: started 2023-06-29T21:05:15,710 Running command Getting requirements to build wheel 2023-06-29T21:05:17,236 running egg_info 2023-06-29T21:05:17,246 writing src/pdm_utils.egg-info/PKG-INFO 2023-06-29T21:05:17,250 writing dependency_links to src/pdm_utils.egg-info/dependency_links.txt 2023-06-29T21:05:17,254 writing entry points to src/pdm_utils.egg-info/entry_points.txt 2023-06-29T21:05:17,257 writing requirements to src/pdm_utils.egg-info/requires.txt 2023-06-29T21:05:17,260 writing top-level names to src/pdm_utils.egg-info/top_level.txt 2023-06-29T21:05:17,318 reading manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T21:05:17,327 adding license file 'LICENSE' 2023-06-29T21:05:17,342 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T21:05:17,459 Getting requirements to build wheel: finished with status 'done' 2023-06-29T21:05:17,481 Created temporary directory: /tmp/pip-modern-metadata-6wl56v3f 2023-06-29T21:05:17,486 Preparing metadata (pyproject.toml): started 2023-06-29T21:05:17,488 Running command Preparing metadata (pyproject.toml) 2023-06-29T21:05:18,786 running dist_info 2023-06-29T21:05:18,825 creating /tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info 2023-06-29T21:05:18,835 writing /tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info/PKG-INFO 2023-06-29T21:05:18,841 writing dependency_links to /tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info/dependency_links.txt 2023-06-29T21:05:18,845 writing entry points to /tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info/entry_points.txt 2023-06-29T21:05:18,849 writing requirements to /tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info/requires.txt 2023-06-29T21:05:18,852 writing top-level names to /tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info/top_level.txt 2023-06-29T21:05:18,856 writing manifest file '/tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T21:05:18,911 reading manifest file '/tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T21:05:18,916 adding license file 'LICENSE' 2023-06-29T21:05:18,929 writing manifest file '/tmp/pip-modern-metadata-6wl56v3f/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T21:05:18,932 creating '/tmp/pip-modern-metadata-6wl56v3f/pdm_utils-1.1.3.dist-info' 2023-06-29T21:05:19,259 Preparing metadata (pyproject.toml): finished with status 'done' 2023-06-29T21:05:19,275 Source in /tmp/pip-wheel-zwfct0km/pdm-utils_60be2843abce488492f67aefa2e06760 has version 1.1.3, which satisfies requirement pdm-utils==1.1.3 from https://files.pythonhosted.org/packages/91/c2/9aaebbc0ef06005bdabb306e6436b057d446a1b427cf910b289a000c88f0/pdm_utils-1.1.3.tar.gz 2023-06-29T21:05:19,277 Removed pdm-utils==1.1.3 from https://files.pythonhosted.org/packages/91/c2/9aaebbc0ef06005bdabb306e6436b057d446a1b427cf910b289a000c88f0/pdm_utils-1.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-8mkua79d' 2023-06-29T21:05:19,292 Created temporary directory: /tmp/pip-unpack-62shcxj5 2023-06-29T21:05:19,293 Building wheels for collected packages: pdm-utils 2023-06-29T21:05:19,302 Created temporary directory: /tmp/pip-wheel-r386fp4d 2023-06-29T21:05:19,303 Destination directory: /tmp/pip-wheel-r386fp4d 2023-06-29T21:05:19,308 Building wheel for pdm-utils (pyproject.toml): started 2023-06-29T21:05:19,310 Running command Building wheel for pdm-utils (pyproject.toml) 2023-06-29T21:05:20,732 running bdist_wheel 2023-06-29T21:05:20,810 running build 2023-06-29T21:05:20,811 running build_py 2023-06-29T21:05:20,828 creating build 2023-06-29T21:05:20,830 creating build/lib 2023-06-29T21:05:20,832 creating build/lib/pdm_utils 2023-06-29T21:05:20,835 copying src/pdm_utils/run.py -> build/lib/pdm_utils 2023-06-29T21:05:20,840 copying src/pdm_utils/__init__.py -> build/lib/pdm_utils 2023-06-29T21:05:20,844 copying src/pdm_utils/__main__.py -> build/lib/pdm_utils 2023-06-29T21:05:20,852 creating build/lib/pdm_utils/functions 2023-06-29T21:05:20,855 copying src/pdm_utils/functions/server.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,860 copying src/pdm_utils/functions/multiprocess.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,864 copying src/pdm_utils/functions/pham_alignment.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,869 copying src/pdm_utils/functions/phagesdb.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,874 copying src/pdm_utils/functions/phameration.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,879 copying src/pdm_utils/functions/__init__.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,883 copying src/pdm_utils/functions/pipeline_shells.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,888 copying src/pdm_utils/functions/deeptmhmm.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,893 copying src/pdm_utils/functions/multithread.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,897 copying src/pdm_utils/functions/basic.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,904 copying src/pdm_utils/functions/fileio.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,910 copying src/pdm_utils/functions/mysqldb_basic.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,915 copying src/pdm_utils/functions/flat_files.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,921 copying src/pdm_utils/functions/eval_modes.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,926 copying src/pdm_utils/functions/querying.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,932 copying src/pdm_utils/functions/url_basic.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,937 copying src/pdm_utils/functions/ncbi.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,942 copying src/pdm_utils/functions/cartography.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,947 copying src/pdm_utils/functions/annotation.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,952 copying src/pdm_utils/functions/mysqldb.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,958 copying src/pdm_utils/functions/tickets.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,963 copying src/pdm_utils/functions/configfile.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,968 copying src/pdm_utils/functions/fasta.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,972 copying src/pdm_utils/functions/subprocess.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,976 copying src/pdm_utils/functions/rpsblast.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,982 copying src/pdm_utils/functions/parsing.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,987 copying src/pdm_utils/functions/pipelines_basic.py -> build/lib/pdm_utils/functions 2023-06-29T21:05:20,994 creating build/lib/pdm_utils/constants 2023-06-29T21:05:20,997 copying src/pdm_utils/constants/schema_conversions.py -> build/lib/pdm_utils/constants 2023-06-29T21:05:21,003 copying src/pdm_utils/constants/__init__.py -> build/lib/pdm_utils/constants 2023-06-29T21:05:21,007 copying src/pdm_utils/constants/constants.py -> build/lib/pdm_utils/constants 2023-06-29T21:05:21,012 copying src/pdm_utils/constants/db_schema_0.py -> build/lib/pdm_utils/constants 2023-06-29T21:05:21,017 copying src/pdm_utils/constants/eval_descriptions.py -> build/lib/pdm_utils/constants 2023-06-29T21:05:21,026 creating build/lib/pdm_utils/classes 2023-06-29T21:05:21,028 copying src/pdm_utils/classes/randomfieldupdatehandler.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,034 copying src/pdm_utils/classes/aragornhandler.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,039 copying src/pdm_utils/classes/alchemyhandler.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,045 copying src/pdm_utils/classes/evaluation.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,049 copying src/pdm_utils/classes/genome.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,056 copying src/pdm_utils/classes/__init__.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,059 copying src/pdm_utils/classes/tmrna.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,066 copying src/pdm_utils/classes/cdspair.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,070 copying src/pdm_utils/classes/bundle.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,075 copying src/pdm_utils/classes/fileio.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,079 copying src/pdm_utils/classes/source.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,084 copying src/pdm_utils/classes/trna.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,093 copying src/pdm_utils/classes/genomepair.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,098 copying src/pdm_utils/classes/dbcomparesummary.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,103 copying src/pdm_utils/classes/trnascansehandler.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,107 copying src/pdm_utils/classes/error.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,112 copying src/pdm_utils/classes/filter.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,117 copying src/pdm_utils/classes/ticket.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,122 copying src/pdm_utils/classes/cds.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,129 copying src/pdm_utils/classes/genometriad.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,135 copying src/pdm_utils/classes/progress.py -> build/lib/pdm_utils/classes 2023-06-29T21:05:21,142 creating build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,144 copying src/pdm_utils/pipelines/update_field.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,150 copying src/pdm_utils/pipelines/compare_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,157 copying src/pdm_utils/pipelines/pham_review.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,163 copying src/pdm_utils/pipelines/pham_finder.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,169 copying src/pdm_utils/pipelines/freeze_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,174 copying src/pdm_utils/pipelines/__init__.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,177 copying src/pdm_utils/pipelines/get_gb_records.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,182 copying src/pdm_utils/pipelines/find_transmembrane.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,188 copying src/pdm_utils/pipelines/find_domains.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,194 copying src/pdm_utils/pipelines/push_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,198 copying src/pdm_utils/pipelines/export_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,205 copying src/pdm_utils/pipelines/convert_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,210 copying src/pdm_utils/pipelines/cluster_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,216 copying src/pdm_utils/pipelines/phamerate.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,222 copying src/pdm_utils/pipelines/revise.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,228 copying src/pdm_utils/pipelines/import_genome.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,236 copying src/pdm_utils/pipelines/find_membrane.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,240 copying src/pdm_utils/pipelines/get_db.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,245 copying src/pdm_utils/pipelines/get_data.py -> build/lib/pdm_utils/pipelines 2023-06-29T21:05:21,303 installing to build/bdist.linux-armv7l/wheel 2023-06-29T21:05:21,304 running install 2023-06-29T21:05:21,364 running install_lib 2023-06-29T21:05:21,379 creating build/bdist.linux-armv7l 2023-06-29T21:05:21,380 creating build/bdist.linux-armv7l/wheel 2023-06-29T21:05:21,383 creating build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-29T21:05:21,385 copying build/lib/pdm_utils/run.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-29T21:05:21,391 creating build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,393 copying build/lib/pdm_utils/functions/server.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,398 copying build/lib/pdm_utils/functions/multiprocess.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,401 copying build/lib/pdm_utils/functions/pham_alignment.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,406 copying build/lib/pdm_utils/functions/phagesdb.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,411 copying build/lib/pdm_utils/functions/phameration.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,416 copying build/lib/pdm_utils/functions/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,419 copying build/lib/pdm_utils/functions/pipeline_shells.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,424 copying build/lib/pdm_utils/functions/deeptmhmm.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,427 copying build/lib/pdm_utils/functions/multithread.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,432 copying build/lib/pdm_utils/functions/basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,438 copying build/lib/pdm_utils/functions/fileio.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,443 copying build/lib/pdm_utils/functions/mysqldb_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,447 copying build/lib/pdm_utils/functions/flat_files.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,453 copying build/lib/pdm_utils/functions/eval_modes.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,457 copying build/lib/pdm_utils/functions/querying.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,463 copying build/lib/pdm_utils/functions/url_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,468 copying build/lib/pdm_utils/functions/ncbi.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,472 copying build/lib/pdm_utils/functions/cartography.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,476 copying build/lib/pdm_utils/functions/annotation.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,480 copying build/lib/pdm_utils/functions/mysqldb.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,486 copying build/lib/pdm_utils/functions/tickets.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,490 copying build/lib/pdm_utils/functions/configfile.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,494 copying build/lib/pdm_utils/functions/fasta.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,498 copying build/lib/pdm_utils/functions/subprocess.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,501 copying build/lib/pdm_utils/functions/rpsblast.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,509 copying build/lib/pdm_utils/functions/parsing.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,514 copying build/lib/pdm_utils/functions/pipelines_basic.py -> build/bdist.linux-armv7l/wheel/pdm_utils/functions 2023-06-29T21:05:21,518 copying build/lib/pdm_utils/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-29T21:05:21,523 creating build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T21:05:21,525 copying build/lib/pdm_utils/constants/schema_conversions.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T21:05:21,531 copying build/lib/pdm_utils/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T21:05:21,534 copying build/lib/pdm_utils/constants/constants.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T21:05:21,539 copying build/lib/pdm_utils/constants/db_schema_0.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T21:05:21,543 copying build/lib/pdm_utils/constants/eval_descriptions.py -> build/bdist.linux-armv7l/wheel/pdm_utils/constants 2023-06-29T21:05:21,549 creating build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,551 copying build/lib/pdm_utils/classes/randomfieldupdatehandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,555 copying build/lib/pdm_utils/classes/aragornhandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,560 copying build/lib/pdm_utils/classes/alchemyhandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,566 copying build/lib/pdm_utils/classes/evaluation.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,569 copying build/lib/pdm_utils/classes/genome.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,576 copying build/lib/pdm_utils/classes/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,579 copying build/lib/pdm_utils/classes/tmrna.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,585 copying build/lib/pdm_utils/classes/cdspair.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,589 copying build/lib/pdm_utils/classes/bundle.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,593 copying build/lib/pdm_utils/classes/fileio.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,597 copying build/lib/pdm_utils/classes/source.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,601 copying build/lib/pdm_utils/classes/trna.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,609 copying build/lib/pdm_utils/classes/genomepair.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,614 copying build/lib/pdm_utils/classes/dbcomparesummary.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,619 copying build/lib/pdm_utils/classes/trnascansehandler.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,623 copying build/lib/pdm_utils/classes/error.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,628 copying build/lib/pdm_utils/classes/filter.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,634 copying build/lib/pdm_utils/classes/ticket.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,638 copying build/lib/pdm_utils/classes/cds.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,645 copying build/lib/pdm_utils/classes/genometriad.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,650 copying build/lib/pdm_utils/classes/progress.py -> build/bdist.linux-armv7l/wheel/pdm_utils/classes 2023-06-29T21:05:21,653 copying build/lib/pdm_utils/__main__.py -> build/bdist.linux-armv7l/wheel/pdm_utils 2023-06-29T21:05:21,658 creating build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,660 copying build/lib/pdm_utils/pipelines/update_field.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,664 copying build/lib/pdm_utils/pipelines/compare_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,670 copying build/lib/pdm_utils/pipelines/pham_review.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,675 copying build/lib/pdm_utils/pipelines/pham_finder.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,681 copying build/lib/pdm_utils/pipelines/freeze_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,685 copying build/lib/pdm_utils/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,689 copying build/lib/pdm_utils/pipelines/get_gb_records.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,694 copying build/lib/pdm_utils/pipelines/find_transmembrane.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,699 copying build/lib/pdm_utils/pipelines/find_domains.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,705 copying build/lib/pdm_utils/pipelines/push_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,709 copying build/lib/pdm_utils/pipelines/export_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,715 copying build/lib/pdm_utils/pipelines/convert_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,720 copying build/lib/pdm_utils/pipelines/cluster_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,726 copying build/lib/pdm_utils/pipelines/phamerate.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,730 copying build/lib/pdm_utils/pipelines/revise.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,736 copying build/lib/pdm_utils/pipelines/import_genome.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,745 copying build/lib/pdm_utils/pipelines/find_membrane.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,748 copying build/lib/pdm_utils/pipelines/get_db.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,753 copying build/lib/pdm_utils/pipelines/get_data.py -> build/bdist.linux-armv7l/wheel/pdm_utils/pipelines 2023-06-29T21:05:21,759 running install_egg_info 2023-06-29T21:05:21,810 running egg_info 2023-06-29T21:05:21,820 writing src/pdm_utils.egg-info/PKG-INFO 2023-06-29T21:05:21,823 writing dependency_links to src/pdm_utils.egg-info/dependency_links.txt 2023-06-29T21:05:21,827 writing entry points to src/pdm_utils.egg-info/entry_points.txt 2023-06-29T21:05:21,829 writing requirements to src/pdm_utils.egg-info/requires.txt 2023-06-29T21:05:21,832 writing top-level names to src/pdm_utils.egg-info/top_level.txt 2023-06-29T21:05:21,863 reading manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T21:05:21,871 adding license file 'LICENSE' 2023-06-29T21:05:21,886 writing manifest file 'src/pdm_utils.egg-info/SOURCES.txt' 2023-06-29T21:05:21,889 Copying src/pdm_utils.egg-info to build/bdist.linux-armv7l/wheel/pdm_utils-1.1.3-py3.7.egg-info 2023-06-29T21:05:21,912 running install_scripts 2023-06-29T21:05:21,960 creating build/bdist.linux-armv7l/wheel/pdm_utils-1.1.3.dist-info/WHEEL 2023-06-29T21:05:21,966 creating '/tmp/pip-wheel-r386fp4d/.tmp-xf9mei9g/pdm_utils-1.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-29T21:05:21,972 adding 'pdm_utils/__init__.py' 2023-06-29T21:05:21,975 adding 'pdm_utils/__main__.py' 2023-06-29T21:05:21,979 adding 'pdm_utils/run.py' 2023-06-29T21:05:21,984 adding 'pdm_utils/classes/__init__.py' 2023-06-29T21:05:21,990 adding 'pdm_utils/classes/alchemyhandler.py' 2023-06-29T21:05:21,995 adding 'pdm_utils/classes/aragornhandler.py' 2023-06-29T21:05:21,999 adding 'pdm_utils/classes/bundle.py' 2023-06-29T21:05:22,010 adding 'pdm_utils/classes/cds.py' 2023-06-29T21:05:22,014 adding 'pdm_utils/classes/cdspair.py' 2023-06-29T21:05:22,018 adding 'pdm_utils/classes/dbcomparesummary.py' 2023-06-29T21:05:22,020 adding 'pdm_utils/classes/error.py' 2023-06-29T21:05:22,023 adding 'pdm_utils/classes/evaluation.py' 2023-06-29T21:05:22,027 adding 'pdm_utils/classes/fileio.py' 2023-06-29T21:05:22,033 adding 'pdm_utils/classes/filter.py' 2023-06-29T21:05:22,043 adding 'pdm_utils/classes/genome.py' 2023-06-29T21:05:22,047 adding 'pdm_utils/classes/genomepair.py' 2023-06-29T21:05:22,052 adding 'pdm_utils/classes/genometriad.py' 2023-06-29T21:05:22,055 adding 'pdm_utils/classes/progress.py' 2023-06-29T21:05:22,058 adding 'pdm_utils/classes/randomfieldupdatehandler.py' 2023-06-29T21:05:22,062 adding 'pdm_utils/classes/source.py' 2023-06-29T21:05:22,065 adding 'pdm_utils/classes/ticket.py' 2023-06-29T21:05:22,075 adding 'pdm_utils/classes/tmrna.py' 2023-06-29T21:05:22,090 adding 'pdm_utils/classes/trna.py' 2023-06-29T21:05:22,095 adding 'pdm_utils/classes/trnascansehandler.py' 2023-06-29T21:05:22,099 adding 'pdm_utils/constants/__init__.py' 2023-06-29T21:05:22,102 adding 'pdm_utils/constants/constants.py' 2023-06-29T21:05:22,106 adding 'pdm_utils/constants/db_schema_0.py' 2023-06-29T21:05:22,110 adding 'pdm_utils/constants/eval_descriptions.py' 2023-06-29T21:05:22,117 adding 'pdm_utils/constants/schema_conversions.py' 2023-06-29T21:05:22,122 adding 'pdm_utils/functions/__init__.py' 2023-06-29T21:05:22,125 adding 'pdm_utils/functions/annotation.py' 2023-06-29T21:05:22,139 adding 'pdm_utils/functions/basic.py' 2023-06-29T21:05:22,143 adding 'pdm_utils/functions/cartography.py' 2023-06-29T21:05:22,146 adding 'pdm_utils/functions/configfile.py' 2023-06-29T21:05:22,149 adding 'pdm_utils/functions/deeptmhmm.py' 2023-06-29T21:05:22,152 adding 'pdm_utils/functions/eval_modes.py' 2023-06-29T21:05:22,155 adding 'pdm_utils/functions/fasta.py' 2023-06-29T21:05:22,159 adding 'pdm_utils/functions/fileio.py' 2023-06-29T21:05:22,167 adding 'pdm_utils/functions/flat_files.py' 2023-06-29T21:05:22,171 adding 'pdm_utils/functions/multiprocess.py' 2023-06-29T21:05:22,175 adding 'pdm_utils/functions/multithread.py' 2023-06-29T21:05:22,182 adding 'pdm_utils/functions/mysqldb.py' 2023-06-29T21:05:22,187 adding 'pdm_utils/functions/mysqldb_basic.py' 2023-06-29T21:05:22,191 adding 'pdm_utils/functions/ncbi.py' 2023-06-29T21:05:22,195 adding 'pdm_utils/functions/parsing.py' 2023-06-29T21:05:22,200 adding 'pdm_utils/functions/phagesdb.py' 2023-06-29T21:05:22,204 adding 'pdm_utils/functions/pham_alignment.py' 2023-06-29T21:05:22,208 adding 'pdm_utils/functions/phameration.py' 2023-06-29T21:05:22,212 adding 'pdm_utils/functions/pipeline_shells.py' 2023-06-29T21:05:22,216 adding 'pdm_utils/functions/pipelines_basic.py' 2023-06-29T21:05:22,223 adding 'pdm_utils/functions/querying.py' 2023-06-29T21:05:22,227 adding 'pdm_utils/functions/rpsblast.py' 2023-06-29T21:05:22,231 adding 'pdm_utils/functions/server.py' 2023-06-29T21:05:22,233 adding 'pdm_utils/functions/subprocess.py' 2023-06-29T21:05:22,238 adding 'pdm_utils/functions/tickets.py' 2023-06-29T21:05:22,243 adding 'pdm_utils/functions/url_basic.py' 2023-06-29T21:05:22,247 adding 'pdm_utils/pipelines/__init__.py' 2023-06-29T21:05:22,255 adding 'pdm_utils/pipelines/cluster_db.py' 2023-06-29T21:05:22,271 adding 'pdm_utils/pipelines/compare_db.py' 2023-06-29T21:05:22,276 adding 'pdm_utils/pipelines/convert_db.py' 2023-06-29T21:05:22,285 adding 'pdm_utils/pipelines/export_db.py' 2023-06-29T21:05:22,291 adding 'pdm_utils/pipelines/find_domains.py' 2023-06-29T21:05:22,294 adding 'pdm_utils/pipelines/find_membrane.py' 2023-06-29T21:05:22,299 adding 'pdm_utils/pipelines/find_transmembrane.py' 2023-06-29T21:05:22,303 adding 'pdm_utils/pipelines/freeze_db.py' 2023-06-29T21:05:22,314 adding 'pdm_utils/pipelines/get_data.py' 2023-06-29T21:05:22,320 adding 'pdm_utils/pipelines/get_db.py' 2023-06-29T21:05:22,325 adding 'pdm_utils/pipelines/get_gb_records.py' 2023-06-29T21:05:22,348 adding 'pdm_utils/pipelines/import_genome.py' 2023-06-29T21:05:22,355 adding 'pdm_utils/pipelines/pham_finder.py' 2023-06-29T21:05:22,362 adding 'pdm_utils/pipelines/pham_review.py' 2023-06-29T21:05:22,366 adding 'pdm_utils/pipelines/phamerate.py' 2023-06-29T21:05:22,370 adding 'pdm_utils/pipelines/push_db.py' 2023-06-29T21:05:22,379 adding 'pdm_utils/pipelines/revise.py' 2023-06-29T21:05:22,384 adding 'pdm_utils/pipelines/update_field.py' 2023-06-29T21:05:22,401 adding 'pdm_utils-1.1.3.dist-info/LICENSE' 2023-06-29T21:05:22,404 adding 'pdm_utils-1.1.3.dist-info/METADATA' 2023-06-29T21:05:22,406 adding 'pdm_utils-1.1.3.dist-info/WHEEL' 2023-06-29T21:05:22,408 adding 'pdm_utils-1.1.3.dist-info/entry_points.txt' 2023-06-29T21:05:22,410 adding 'pdm_utils-1.1.3.dist-info/top_level.txt' 2023-06-29T21:05:22,414 adding 'pdm_utils-1.1.3.dist-info/RECORD' 2023-06-29T21:05:22,429 removing build/bdist.linux-armv7l/wheel 2023-06-29T21:05:22,609 Building wheel for pdm-utils (pyproject.toml): finished with status 'done' 2023-06-29T21:05:22,635 Created wheel for pdm-utils: filename=pdm_utils-1.1.3-py3-none-any.whl size=276161 sha256=3c0db9ec5178e0090d7a8858b36c61a8ec4283881e6583c8aa3bb0c7bbe89bda 2023-06-29T21:05:22,637 Stored in directory: /tmp/pip-ephem-wheel-cache-o9iexv5l/wheels/04/bd/c3/7d8475508debccae57744e107d3fb3a227798e9905a76fed9a 2023-06-29T21:05:22,673 Successfully built pdm-utils 2023-06-29T21:05:22,702 Removed build tracker: '/tmp/pip-build-tracker-8mkua79d'